Mercurial > repos > fubar > egapx_runner
view examples/input_D_farinae_minimal.yaml @ 7:9c778770514f draft
planemo upload for repository https://github.com/ncbi/egapx commit 7d4eea19157be8d7b184cb066d05d81c73f13a04-dirty
author | fubar |
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date | Sun, 04 Aug 2024 13:21:59 +0000 |
parents | d9c5c5b87fec |
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# This is a very minimal example of EGAPx, it fits into 4 CPU cores and 6GB of memory. # To be able to do this, we culled the input files and some stages of execution. # To limit the requirements you also need to use -e docker_minimal genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz reads: - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.1 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.2 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.1 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.2 taxid: 6954 proteins: [] hmm: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/gnomon/hmm_parameters/6956.params tasks: star_wnode: star_wnode: -cpus-per-worker 4