annotate jb2_urlconf.py @ 47:3e53204c2419 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty

inconf = open('config.json', 'r').readlines()
with open('config.json.local', 'w') as bak:
    bak.write('\n'.join(inconf))
urlbase = "https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/hum/"
utag = '"uri":'
for i, row in enumerate(inconf):
    ispath = False
    if row.strip().startswith(utag):
            ispath = True
            parth = row.split(utag)[1].strip()
            inconf[i] = '%s%s' % (urlbase, parth)
with open('config.json', 'w') as outconf:
    outconf.write('\n'.join(inconf))