Mercurial > repos > fubar > jbrowse2
annotate test-data/blastxml/test.xml @ 97:74074746ccd8 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 1c04ea76330d0148a7682b3c26846e5a5df21f99
author | fubar |
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date | Sat, 01 Jun 2024 05:37:13 +0000 |
parents | 2de9f585505b |
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rev | line source |
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2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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1 <?xml version="1.0"?> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
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2 <root> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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3 <metadata> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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4 <genomes> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
|
5 <genome>test-data/merlin.fa</genome> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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6 </genomes> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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7 <general> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
|
8 <defaultLocation></defaultLocation> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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9 <trackPadding>40</trackPadding> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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10 <shareLink>true</shareLink> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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11 <aboutDescription></aboutDescription> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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12 <show_tracklist>true</show_tracklist> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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13 <show_nav>true</show_nav> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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14 <show_overview>false</show_overview> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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15 <show_menu>true</show_menu> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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16 <hideGenomeOptions>false</hideGenomeOptions> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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17 </general> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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18 </metadata> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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19 <tracks> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
|
20 <track cat="Blah" format="blast"> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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21 <files> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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22 <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP"/> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
|
23 </files> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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24 |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
|
25 <options> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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26 <style> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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27 <className>feature</className> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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28 <description></description> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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29 <label>Description</label> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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30 <height>400px</height> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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31 </style> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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32 <blast> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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33 <parent>test-data/blastxml/merlin.gff</parent> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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34 <protein>true</protein> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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35 <min_gap>10</min_gap> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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36 </blast> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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37 <scaling> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
|
38 <method>score</method> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
|
39 <algo>blast</algo> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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40 <scales> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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|
41 <type>__auto__</type> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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42 </scales> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
changeset
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43 <scheme> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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44 <type>opacity</type> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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45 <color>__auto__</color> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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46 </scheme> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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47 </scaling> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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parents:
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48 </options> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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49 </track> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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50 <track cat="Blah" format="blast"> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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51 <files> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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52 <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP, min_gap=3"/> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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53 </files> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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54 |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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55 <options> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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56 <style> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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57 <className>feature</className> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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58 <description></description> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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59 <label>Description</label> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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60 <height>400px</height> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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61 </style> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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parents:
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62 <blast> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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63 <parent>test-data/blastxml/merlin.gff</parent> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
diff
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64 <protein>true</protein> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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65 <min_gap>3</min_gap> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
parents:
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66 </blast> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
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67 <scaling> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
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68 <method>score</method> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
fubar
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69 <algo>blast</algo> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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70 <scales> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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71 <type>__auto__</type> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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parents:
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72 </scales> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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73 <scheme> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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74 <type>opacity</type> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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75 <color>__auto__</color> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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76 </scheme> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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77 </scaling> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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78 </options> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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79 </track> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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80 |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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81 <track cat="Blah" format="blast"> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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82 <files> |
2de9f585505b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit b30d2e277cc360437a02fa812c577c0c8d997cff-dirty
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83 <trackFile path="test-data/blastxml/blast-gene1.xml" ext="blastxml" label="Non protein match/matchpart"/> |
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84 </files> |
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85 |
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86 <options> |
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87 <style> |
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88 <className>feature</className> |
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89 <description></description> |
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90 <label>Description</label> |
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91 <height>400px</height> |
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92 </style> |
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93 <blast> |
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94 <parent>test-data/blastxml/merlin.gff</parent> |
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95 <min_gap>3</min_gap> |
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96 </blast> |
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97 <scaling> |
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98 <method>ignore</method> |
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99 <algo>linear</algo> |
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100 <scheme> |
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101 <type>opacity</type> |
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102 <color>__auto__</color> |
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103 </scheme> |
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104 </scaling> |
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105 </options> |
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106 </track> |
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107 |
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108 <track cat="Blah" format="blast"> |
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109 <files> |
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110 <trackFile path="test-data/blastxml/blastn-gene1.xml" ext="blastxml" label="Non protein match/matchpart, no parent"/> |
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111 </files> |
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112 |
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113 <options> |
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114 <style> |
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115 <className>feature</className> |
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116 <description></description> |
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117 <label>Description</label> |
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118 <height>400px</height> |
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119 </style> |
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120 <blast> |
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121 <min_gap>40</min_gap> |
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122 </blast> |
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123 <scaling> |
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124 <method>score</method> |
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125 <algo>blast</algo> |
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126 <scales> |
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127 <type>__auto__</type> |
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128 </scales> |
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129 <scheme> |
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130 <type>opacity</type> |
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131 <color>__auto__</color> |
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132 </scheme> |
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133 </scaling> |
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134 </options> |
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135 </track> |
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136 |
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137 </tracks> |
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138 </root> |