Mercurial > repos > fubar > jbrowse2
annotate bedscoreplugin.js @ 114:75f01bd05bd8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 2f823945594c6e61a7661c253b671a604b8fb959
author | bgruening |
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date | Tue, 20 Aug 2024 06:43:01 +0000 |
parents | 5d1259b88c27 |
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rev | line source |
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108
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
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1 // colour bed regions according to score - must have columns and score as part of the adapter setup |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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2 ;(function () { |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
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3 class Plugin { |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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4 name = 'BedScorePlugin'; |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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5 version = '1.0'; |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
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6 |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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7 install(pluginManager) { |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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changeset
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8 pluginManager.jexl.addFunction('customColor', feature => { |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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changeset
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9 if (Number(feature.get('score')) > 0) { |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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10 return 'red'; |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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11 } else { |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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12 return 'blue'; |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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13 } |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
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14 }) |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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15 } |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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16 |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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17 configure(pluginManager) {} |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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18 } |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
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19 |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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changeset
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20 // the plugin will be included in both the main thread and web worker, so |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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21 // install plugin to either window or self (webworker global scope) |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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22 ;(typeof self !== 'undefined' ? self : window).JBrowsePluginBedScorePlugin = |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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23 { |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
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changeset
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24 default: Plugin, |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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25 } |
5d1259b88c27
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf
fubar
parents:
diff
changeset
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26 })() |