Mercurial > repos > fubar > jbrowse2
annotate repeathumfish.txt @ 54:d6b0feb22584 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
author | fubar |
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date | Thu, 14 Mar 2024 00:59:36 +0000 |
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rev | line source |
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54
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
diff
changeset
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1 Calypte Anna |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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2 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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3 ================================================== |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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4 file name: rm_input.fasta |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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5 sequences: 159 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
diff
changeset
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6 total length: 1059687259 bp (1043590636 bp excl N/X-runs) |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
diff
changeset
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7 GC level: 41.49 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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8 bases masked: 79638300 bp ( 7.63 %) |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
diff
changeset
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9 ================================================== |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
diff
changeset
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10 number of length percentage |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
diff
changeset
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11 elements* occupied of sequence |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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12 -------------------------------------------------- |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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13 SINEs: 32491 3044030 bp 0.29 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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14 ALUs 0 0 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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15 MIRs 23309 1792450 bp 0.17 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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16 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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17 LINEs: 168150 56100653 bp 5.38 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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18 LINE1 446 51456 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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19 LINE2 3520 419909 bp 0.04 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
diff
changeset
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20 L3/CR1 161974 55206716 bp 5.29 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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21 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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22 LTR elements: 3415 1802798 bp 0.17 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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23 ERVL 649 266145 bp 0.03 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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24 ERVL-MaLRs 15 814 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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25 ERV_classI 1341 795364 bp 0.08 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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26 ERV_classII 1159 705705 bp 0.07 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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27 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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28 DNA elements: 12073 1651025 bp 0.16 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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29 hAT-Charlie 338 55376 bp 0.01 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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30 TcMar-Tigger 787 83392 bp 0.01 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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31 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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32 Unclassified: 3325 445147 bp 0.04 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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33 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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34 Total interspersed repeats: 63043653 bp 6.04 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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35 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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36 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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37 Small RNA: 5543 745245 bp 0.07 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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38 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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39 Satellites: 109 8273 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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40 Simple repeats: 284418 12956749 bp 1.24 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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41 Low complexity: 61652 3494878 bp 0.33 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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42 ================================================== |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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43 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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44 * most repeats fragmented by insertions or deletions |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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45 have been counted as one element |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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46 Runs of >=20 X/Ns in query were excluded in % calcs |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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47 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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48 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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49 The query species was assumed to be homo sapiens |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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50 RepeatMasker version 4.1.5 , default mode |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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51 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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52 run with rmblastn version 2.13.0+ |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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53 FamDB: CONS-Dfam_3.7 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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54 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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55 Amphioxus |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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56 ================================================== |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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57 file name: rm_input.fasta |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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58 sequences: 96 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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59 total length: 458494623 bp (458485423 bp excl N/X-runs) |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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changeset
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60 GC level: 41.61 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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61 bases masked: 9756877 bp ( 2.13 %) |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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62 ================================================== |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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63 number of length percentage |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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64 elements* occupied of sequence |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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65 -------------------------------------------------- |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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66 SINEs: 10212 946135 bp 0.21 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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67 ALUs 0 0 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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68 MIRs 5121 527992 bp 0.12 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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69 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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70 LINEs: 4019 622661 bp 0.14 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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71 LINE1 179 11937 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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72 LINE2 662 63166 bp 0.01 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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73 L3/CR1 2144 286741 bp 0.06 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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74 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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75 LTR elements: 689 138371 bp 0.03 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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76 ERVL 20 1005 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
parents:
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77 ERVL-MaLRs 4 322 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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78 ERV_classI 584 118702 bp 0.03 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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79 ERV_classII 28 1778 bp 0.00 % |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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80 |
d6b0feb22584
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
fubar
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81 DNA elements: 850 57478 bp 0.01 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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82 hAT-Charlie 46 2708 bp 0.00 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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83 TcMar-Tigger 73 5236 bp 0.00 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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84 |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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85 Unclassified: 517 41430 bp 0.01 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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86 |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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87 Total interspersed repeats: 1806075 bp 0.39 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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88 |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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89 |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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90 Small RNA: 5487 857233 bp 0.19 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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91 |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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92 Satellites: 629 50630 bp 0.01 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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93 Simple repeats: 115914 6556304 bp 1.43 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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94 Low complexity: 9124 485904 bp 0.11 % |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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95 ================================================== |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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96 |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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97 * most repeats fragmented by insertions or deletions |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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98 have been counted as one element |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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99 Runs of >=20 X/Ns in query were excluded in % calcs |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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100 |
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101 |
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102 The query species was assumed to be homo sapiens |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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103 RepeatMasker version 4.1.5 , default mode |
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104 |
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105 run with rmblastn version 2.13.0+ |
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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
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106 FamDB: CONS-Dfam_3.7 |