Mercurial > repos > fubar > jbrowse2

comparison autogenJB2.py @ 38:07849bf248e3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit a74e469a81b38c7142f63de510ae31d3754d1767
author fubar
date Fri, 01 Mar 2024 00:40:38 +0000
parents 5f39f745682f
children bc57164eb270
comparison
equal deleted inserted replaced
37:7adde511daa1 38:07849bf248e3
107 "paf": {"genome": refdat, "genome_label": trackname} 107 "paf": {"genome": refdat, "genome_label": trackname}
108 } 108 }
109 } 109 }
110 } 110 }
111 elif trext == 'bam': 111 elif trext == 'bam':
112 track_conf = {"conf": {"options": {"bam": {"bam_indices": {"bam_index": track[3]}}}}} 112 track_conf = {"conf": {"options": {"bam": {"bam_index": track[3]}}}}
113 elif trext == 'cram': 113 elif trext == 'cram':
114 track_conf = {"conf": {"options": {"cram": {"cram_indices": {"cram_index": track[3]}}}}} 114 track_conf = {"conf": {"options": {"cram": {"cram_index": track[3]}}}}
115 else: 115 else:
116 track_conf = {} 116 track_conf = {}
117 track_conf["format"] = trext 117 track_conf["format"] = trext
118 track_conf["name"] = trackname 118 track_conf["name"] = trackname
119 track_conf["label"] = trackname 119 track_conf["label"] = trackname