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comparison jbrowse2.py @ 74:13ede71c3a4b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit d03454f949af9f3fff638f6a3e52fe42bc96be3b
author fubar
date Mon, 01 Apr 2024 03:56:37 +0000
parents 3b2815efa5d9
children 9c8459ce7d88
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73:3b2815efa5d9 74:13ede71c3a4b
1483 https://github.com/GMOD/jbrowse-components/discussions/3568 1483 https://github.com/GMOD/jbrowse-components/discussions/3568
1484 https://github.com/GMOD/jbrowse-components/pull/4148 1484 https://github.com/GMOD/jbrowse-components/pull/4148
1485 """ 1485 """
1486 new_index = "Nothing written" 1486 new_index = "Nothing written"
1487 session_spec = {"views": []} 1487 session_spec = {"views": []}
1488 logging.debug("def data=%s" % data) 1488 logging.debug("def ass_first=%s\ndata=%s" % (self.ass_first_contigs, data))
1489 for first_contig in self.ass_first_contigs: 1489 for first_contig in self.ass_first_contigs:
1490 gnome, refName, end = first_contig 1490 gnome, refName, end = first_contig
1491 start = 0 1491 start = 0
1492 if False or data.get("defaultLocation", ""): 1492 if False or data.get("defaultLocation", ""):
1493 loc_match = re.search( 1493 loc_match = re.search(