comparison jbrowse2.py @ 123:160f33c6ba85 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit a9124072bc71dd670ee58ff8e4846e14d6d603ec-dirty

122:ae07c55ab96b

        self.genome_names = []
        self.trackIdlist = []
        self.tracksToAdd = {}
        self.config_json = {}
        self.config_json_file = os.path.join(outdir, "config.json")
        self.clone_jbrowse()

    def get_cwd(self, cwd):
        if cwd:
            return self.outdir
        else:

123:160f33c6ba85

        self.genome_names = []
        self.trackIdlist = []
        self.tracksToAdd = {}
        self.config_json = {}
        self.config_json_file = os.path.join(outdir, "config.json")
        self.clone_jbrowse(realclone=False)

    def get_cwd(self, cwd):
        if cwd:
            return self.outdir
        else: