comparison jbrowse2.py @ 25:172acf9c7a53 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 50ecae3ea703a1b04501cc44f0d1fa6d714a6cc9

24:fb6cc7bc24df

            if self.genome_name is None:
                self.genome_name = (
                    genome_name  # first one for all tracks - other than paf
                )
                self.genome_firstcontig = None
                fl = open(fapath, "r").readline().strip().split(">", 1)
                if len(fl) > 1:
                    self.genome_firstcontig = fl[1].split().strip()
        if self.config_json.get("assemblies", None):
            self.config_json["assemblies"] += assemblies
        else:
            self.config_json["assemblies"] = assemblies

25:172acf9c7a53

            if self.genome_name is None:
                self.genome_name = (
                    genome_name  # first one for all tracks - other than paf
                )
                self.genome_firstcontig = None
                fl = open(fapath, "r").readline().strip().split(">")
                if len(fl) > 1:
                    fl = fl[1]
                    if len(fl.split()) > 1:
                        self.genome_firstcontig = fl.split()[0].strip()
                    else:
                        self.genome_firstcontig = fl
        if self.config_json.get("assemblies", None):
            self.config_json["assemblies"] += assemblies
        else:
            self.config_json["assemblies"] = assemblies