comparison jbrowse2.py @ 41:3e7a4ed46551 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78-dirty

40:e1a3d3221ed3

                    outputTrackConfig,
                    track["conf"]["options"]["bam"],
                    bam_index=real_indexes[i],
                )
            elif dataset_ext == "cram":
                real_indexes = track["conf"]["options"]["cram"]["cram_index"][
                    "cram_index"
                ]
                if not isinstance(real_indexes, list):
                    real_indexes = [real_indexes]

                self.add_cram(
                    dataset_path,

41:3e7a4ed46551

                    outputTrackConfig,
                    track["conf"]["options"]["bam"],
                    bam_index=real_indexes[i],
                )
            elif dataset_ext == "cram":
                real_indexes = track["conf"]["options"]["cram"][ "cram_index"]
                if not isinstance(real_indexes, list):
                    real_indexes = [real_indexes]

                self.add_cram(
                    dataset_path,