Mercurial > repos > fubar > jbrowse2
comparison readme.rst @ 46:4181e97c70a7 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a
| author | fubar |
|---|---|
| date | Mon, 04 Mar 2024 09:47:19 +0000 |
| parents | fb6cc7bc24df |
| children | f350467f9433 |
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| 45:0ec526d2d8c1 | 46:4181e97c70a7 |
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| 1 JBrowse2 in Galaxy | 1 JBrowse2 in Galaxy |
| 2 ================== | 2 ================== |
| 3 | 3 |
| 4 Added Feb 3: cool/mcool -> hic | 4 Added Mar 3: |
| 5 - optional tracks at last for JB2 | |
| 6 - dotted noodles from optional inputs now ignored without harm | |
| 7 - autogenJB2. | |
| 8 - Takes a collection of bam/vcf etc and turns them into tracks in a normal JB2 history item. | |
| 9 - Uses the JbrowseConnector, but the XML tool drives it from the contents of the collection. | |
| 10 - Collection can be built from any source or with optional noodles in a WF | |
| 11 - Produces a JB2 with all available tracks. | |
| 12 - Argparse command line with repeats for tracks and references | |
| 13 - so works outside Galaxy to process directories or s3 buckets. | |
| 14 | |
| 15 | |
| 16 Added Feb 3: cool/mcool -> hic | |
| 5 | 17 |
| 6 .. image:: dm4_in_jb2.png | 18 .. image:: dm4_in_jb2.png |
| 7 | 19 |
| 8 Other tracks | 20 Other tracks |
| 9 | 21 |