comparison gff3_rebase.py @ 17:4c201a3d4755 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit a37bfdfc108501b11c7b2aa15efb1bd16f0c4b66

16:1fe91657bfd6

            else:
                yield feature

        if hasattr(feature, "sub_features"):
            for x in feature_lambda(
                feature.sub_features, test, test_kwargs, subfeatures=subfeatures
            ):
                yield x


def feature_test_qual_value(feature, **kwargs):

        "child",
        type=argparse.FileType("r"),
        help="Child GFF3 annotations to rebase against parent",
    )
    parser.add_argument(
        "--interpro", action="store_true", help="Interpro specific modifications"
    )
    parser.add_argument(
        "--protein2dna",
        action="store_true",
        help="Map protein translated results to original DNA data",

17:4c201a3d4755

            else:
                yield feature

        if hasattr(feature, "sub_features"):
            for x in feature_lambda(
                feature.sub_features,
                test,
                test_kwargs,
                subfeatures=subfeatures,
            ):
                yield x


def feature_test_qual_value(feature, **kwargs):

        "child",
        type=argparse.FileType("r"),
        help="Child GFF3 annotations to rebase against parent",
    )
    parser.add_argument(
        "--interpro",
        action="store_true",
        help="Interpro specific modifications",
    )
    parser.add_argument(
        "--protein2dna",
        action="store_true",
        help="Map protein translated results to original DNA data",