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comparison jbrowse2.py @ 70:5f0ee87daef4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit aacbae2ec1bf5c69017c37f925c9d400e8a8ba9d-dirty
author fubar
date Fri, 29 Mar 2024 09:35:57 +0000
parents 7230a2422507
children e26a8a6d2d2e
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69:7230a2422507 70:5f0ee87daef4
1605 "quaternary_color": root.find("metadata/general/quaternary_color").text, 1605 "quaternary_color": root.find("metadata/general/quaternary_color").text,
1606 "font_size": root.find("metadata/general/font_size").text, 1606 "font_size": root.find("metadata/general/font_size").text,
1607 } 1607 }
1608 jc.add_general_configuration(general_data) 1608 jc.add_general_configuration(general_data)
1609 trackconf = jc.config_json.get("tracks", []) 1609 trackconf = jc.config_json.get("tracks", [])
1610 logging.warn("%%%%%%%%% genome_names=%s" % jc.genome_names) 1610 logging.warn("++++++++++++ genome_names=%s" % jc.genome_names)
1611 for gnome in jc.genome_names: 1611 for gnome in jc.genome_names:
1612 trackconf += jc.tracksToAdd[gnome] 1612 trackconf += jc.tracksToAdd[gnome]
1613 jc.config_json["tracks"] = trackconf 1613 jc.config_json["tracks"] = trackconf
1614 assconf = jc.config_json.get("assemblies", []) 1614 assconf = jc.config_json.get("assemblies", [])
1615 assconf += jc.assemblies 1615 assconf += jc.assemblies