Mercurial > repos > fubar > jbrowse2
comparison autogenJB2.py @ 36:5f39f745682f draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 80b849766a962bac4bd0bb8cb69c118cc42699cd-dirty
| author | fubar |
|---|---|
| date | Thu, 29 Feb 2024 00:47:58 +0000 |
| parents | 15da358c3108 |
| children | 07849bf248e3 |
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| 35:15da358c3108 | 36:5f39f745682f |
|---|---|
| 107 "paf": {"genome": refdat, "genome_label": trackname} | 107 "paf": {"genome": refdat, "genome_label": trackname} |
| 108 } | 108 } |
| 109 } | 109 } |
| 110 } | 110 } |
| 111 elif trext == 'bam': | 111 elif trext == 'bam': |
| 112 track_conf["conf"] = {"options": {"bam": {"bam_indices": {"bam_index": track[3]}}}} | 112 track_conf = {"conf": {"options": {"bam": {"bam_indices": {"bam_index": track[3]}}}}} |
| 113 elif trext == 'cram': | 113 elif trext == 'cram': |
| 114 track_conf["conf"] = {"options": {"cram": {"cram_indices": {"cram_index": track[3]}}}} | 114 track_conf = {"conf": {"options": {"cram": {"cram_indices": {"cram_index": track[3]}}}}} |
| 115 else: | 115 else: |
| 116 track_conf = {} | 116 track_conf = {} |
| 117 track_conf["format"] = trext | 117 track_conf["format"] = trext |
| 118 track_conf["name"] = trackname | 118 track_conf["name"] = trackname |
| 119 track_conf["label"] = trackname | 119 track_conf["label"] = trackname |