Mercurial > repos > fubar > jbrowse2
comparison jbrowse2.py @ 69:7230a2422507 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 2c7d6c19a42c421de987ebfdf927c64062ebd79f-dirty
| author | fubar |
|---|---|
| date | Fri, 29 Mar 2024 09:14:59 +0000 |
| parents | c4eb6a85db70 |
| children | 5f0ee87daef4 |
comparison
equal
deleted
inserted
replaced
| 68:c4eb6a85db70 | 69:7230a2422507 |
|---|---|
| 1605 "quaternary_color": root.find("metadata/general/quaternary_color").text, | 1605 "quaternary_color": root.find("metadata/general/quaternary_color").text, |
| 1606 "font_size": root.find("metadata/general/font_size").text, | 1606 "font_size": root.find("metadata/general/font_size").text, |
| 1607 } | 1607 } |
| 1608 jc.add_general_configuration(general_data) | 1608 jc.add_general_configuration(general_data) |
| 1609 trackconf = jc.config_json.get("tracks", []) | 1609 trackconf = jc.config_json.get("tracks", []) |
| 1610 logging.warn("genome_names=%s" % jc.genome_names) | 1610 logging.warn("%%%%%%%%% genome_names=%s" % jc.genome_names) |
| 1611 for gnome in jc.genome_names: | 1611 for gnome in jc.genome_names: |
| 1612 trackconf += jc.tracksToAdd[gnome] | 1612 trackconf += jc.tracksToAdd[gnome] |
| 1613 jc.config_json["tracks"] = trackconf | 1613 jc.config_json["tracks"] = trackconf |
| 1614 assconf = jc.config_json.get("assemblies", []) | 1614 assconf = jc.config_json.get("assemblies", []) |
| 1615 assconf += jc.assemblies | 1615 assconf += jc.assemblies |
| 1616 jc.config_json["assemblies"] = assconf | 1616 jc.config_json["assemblies"] = assconf |
| 1617 logging.warn("&&&assemblies=%s, gnames=%s" % (assconf, jc.genome_names)) | |
| 1617 jc.write_config() | 1618 jc.write_config() |
| 1618 jc.add_default_session(default_session_data) | 1619 jc.add_default_session(default_session_data) |
| 1619 # jc.text_index() not sure what broke here. | 1620 # jc.text_index() not sure what broke here. |