Mercurial > repos > fubar > jbrowse2
comparison jbrowse2.py @ 83:746eae952c18 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 2dad2139324940fbff8aa089a72641800211e2d9-dirty
| author | fubar |
|---|---|
| date | Wed, 03 Apr 2024 02:47:22 +0000 |
| parents | e9bcbed05108 |
| children | 3b2ff9864995 |
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| 82:c22c34695f1a | 83:746eae952c18 |
|---|---|
| 1086 categ = trackData["category"] | 1086 categ = trackData["category"] |
| 1087 useuri = trackData["useuri"].lower() == "yes" | 1087 useuri = trackData["useuri"].lower() == "yes" |
| 1088 if useuri: | 1088 if useuri: |
| 1089 url = data | 1089 url = data |
| 1090 else: | 1090 else: |
| 1091 url = tId | 1091 url = tId + '.gz' |
| 1092 dest = "%s/%s" % (self.outdir, url) | 1092 dest = "%s/%s" % (self.outdir, url) |
| 1093 self._sort_bed(data, dest) | 1093 self._sort_bed(data, dest) |
| 1094 trackDict = { | 1094 trackDict = { |
| 1095 "type": "FeatureTrack", | 1095 "type": "FeatureTrack", |
| 1096 "trackId": tId, | 1096 "trackId": tId, |