comparison jbrowse2.py @ 28:9a5c409f33f4 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit e65f2527a97a04173091d28b939e42101582bc56-dirty

27:4ff1ed2065cc

            # allow commas like 100,000 but ignore as integer
            if loc_match:
                refName = loc_match.group(1)
                drdict["refName"] = refName
                if loc_match.group(2) > "":
                    drdict["start"] = int(loc_match.group(2).replace(',',''))
                if loc_match.group(3) > "":
                    drdict["end"] = int(loc_match.group(3).replace(',',''))
            else:
                logging.info(
                    "@@@ regexp could not match contig:start..end in the supplied location %s - please fix"
                    % ddl
                )

28:9a5c409f33f4

            # allow commas like 100,000 but ignore as integer
            if loc_match:
                refName = loc_match.group(1)
                drdict["refName"] = refName
                if loc_match.group(2) > "":
                    drdict["start"] = int(loc_match.group(2).replace(",", ""))
                if loc_match.group(3) > "":
                    drdict["end"] = int(loc_match.group(3).replace(",", ""))
            else:
                logging.info(
                    "@@@ regexp could not match contig:start..end in the supplied location %s - please fix"
                    % ddl
                )