Mercurial > repos > fubar > jbrowse2
comparison autogenJB2.py @ 65:c81902830900 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 6dac6d6debf44c68eae2785e926fb8420f76958e
| author | fubar |
|---|---|
| date | Thu, 28 Mar 2024 10:31:07 +0000 |
| parents | ab0d6782a95f |
| children | bc10ad1dfb98 |
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| 64:497fd2d27aa2 | 65:c81902830900 |
|---|---|
| 198 # "tertiary_color": root.find("metadata/general/tertiary_color").text, | 198 # "tertiary_color": root.find("metadata/general/tertiary_color").text, |
| 199 # "quaternary_color": root.find("metadata/general/quaternary_color").text, | 199 # "quaternary_color": root.find("metadata/general/quaternary_color").text, |
| 200 # "font_size": root.find("metadata/general/font_size").text, | 200 # "font_size": root.find("metadata/general/font_size").text, |
| 201 # } | 201 # } |
| 202 # jc.add_general_configuration(general_data) | 202 # jc.add_general_configuration(general_data) |
| 203 trackconf = jc.config_json.get("tracks", None) | 203 trackconf = jc.config_json.get("tracks", []) |
| 204 if trackconf: | 204 for gnome in jc.genome_names: |
| 205 jc.config_json["tracks"].update(jc.tracksToAdd) | 205 trackconf += jc.tracksToAdd[gnome] |
| 206 else: | 206 jc.config_json["tracks"] = trackconf |
| 207 jc.config_json["tracks"] = jc.tracksToAdd | |
| 208 jc.write_config() | 207 jc.write_config() |
| 209 defLoc = makeDefaultLocation() | 208 defLoc = makeDefaultLocation() |
| 210 default_session_data.update( | 209 default_session_data.update( |
| 211 {"defaultLocation": defLoc, "session_name": sessName} | 210 {"defaultLocation": defLoc, "session_name": sessName} |
| 212 ) | 211 ) |