Mercurial > repos > fubar > jbrowse2
comparison test-data/maf/merlin.maf @ 0:d78175596286 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit cd77dffaad652cfb75b98bde5231beaa6d63cd5b-dirty
| author | fubar |
|---|---|
| date | Mon, 08 Jan 2024 09:20:33 +0000 |
| parents | |
| children | e7a6f7a7148d |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:d78175596286 |
|---|---|
| 1 ##maf version=1 scoring=lastz.v1.04.22 | |
| 2 # lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple | |
| 3 # | |
| 4 # hsp_threshold = 3000 | |
| 5 # gapped_threshold = 3000 | |
| 6 # x_drop = 910 | |
| 7 # y_drop = 9400 | |
| 8 # gap_open_penalty = 400 | |
| 9 # gap_extend_penalty = 30 | |
| 10 # A C G T | |
| 11 # A 91 -114 -31 -123 | |
| 12 # C -114 100 -125 -31 | |
| 13 # G -31 -125 100 -114 | |
| 14 # T -123 -31 -114 91 | |
| 15 a score=5613 | |
| 16 s Merlin.Merlin 960 60 + 172788 ATTTTCTGTAGCAGTTCAAACTGTAGAAAATGATGAAGTTATTTTAACTTTACCAGCTTT | |
| 17 s merlin1.Merlin 960 60 + 60 ATTTTCTGTAGCAGTTCCAAACTGTAGAAAATGATGAAGTTATTTTAACTTACCAGCTTT | |
| 18 a score=5667 | |
| 19 s Merlin.Merlin 1020 60 + 172788 CGTAATTTTCCGCAAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCCAAGTA | |
| 20 s merlin2.Merlin 0 60 + 60 CGTAATTTTCCGCAATAAAACAATGGGGAGCTATGCTCCCCATTTTTACAATCACAAGTA | |
| 21 a score=5721 | |
| 22 s Merlin.Merlin 1080 60 + 172788 TTTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGACAACCCTCCAGCAGCTCCTC | |
| 23 s merlin3.Merlin 0 60 + 60 TTTCGAAGTAGAGTTTCGGGTCGAATTAATGACGTGAGTACAACCCTCCAGCAGCTCCTC | |
| 24 a score=5613 | |
| 25 s Merlin.Merlin 1140 60 + 172788 CAAGTCTAGATAATCTACTTAAACTTCCATTAAGAGACATTTCACTATTAATTCCAGTTA | |
| 26 s merlin4.Merlin 0 60 + 60 CAAGTCTAGGATAATCTACTTAAACTTCCATTAAAGACATTTCACTATTAATTCCAGTTA | |
| 27 a score=5703 | |
| 28 s Merlin.Merlin 1200 60 + 172788 TAGAATTAACAGCTCTATCTTCAATCCAATCAAGAGCAGCTTGACGTCCAACAGCACCCG | |
| 29 s merlin5.Merlin 0 60 + 60 TAGAATTAACAGCTCTATTCAATCCAATCCCAAGAGCAGCTTGACGTCCAACAGCACCCG | |
| 30 a score=5649 | |
| 31 s Merlin.Merlin 1260 60 + 172788 TTTGCATTACTCTGTAAGCAAATGTAACATCGAAAACCGCAATTTGGTTATCTCCTTCAT | |
| 32 s merlin6.Merlin 0 60 + 60 TTTGCATTACTCTGTAAGCAA TGTAACATCGAAAACCGCAATTATGGTTATCTCCTTCAT |