Mercurial > repos > fubar > jbrowse2
comparison macros.xml @ 71:e26a8a6d2d2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit cf208cecf0140ff43d145a44713ab7108057fb8b
| author | fubar |
|---|---|
| date | Sat, 30 Mar 2024 07:15:04 +0000 |
| parents | c4eb6a85db70 |
| children | dff27c9f6d72 |
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| 70:5f0ee87daef4 | 71:e26a8a6d2d2e |
|---|---|
| 436 </when> | 436 </when> |
| 437 </conditional> | 437 </conditional> |
| 438 </section> | 438 </section> |
| 439 </xml> | 439 </xml> |
| 440 | 440 |
| 441 <!-- TODO use this --> | |
| 442 <xml name="track_menu"> | 441 <xml name="track_menu"> |
| 443 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> | 442 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> |
| 444 <repeat name="track_menu" title="Track Menu"> | 443 <repeat name="track_menu" title="Track Menu"> |
| 445 <param label="Menu action" | 444 <param label="Menu action" |
| 446 type="select" | 445 type="select" |
| 554 help="Multiple references can be used for mashmap PAF. A URI source requires all the associated tabix index files to be in place."> | 553 help="Multiple references can be used for mashmap PAF. A URI source requires all the associated tabix index files to be in place."> |
| 555 <option value="history" selected="true">PAF reference comparison genome from a history file</option> | 554 <option value="history" selected="true">PAF reference comparison genome from a history file</option> |
| 556 <option value="uri">PAF reference comparison genome tabix .gz URI with index files at the corresponding URIs</option> | 555 <option value="uri">PAF reference comparison genome tabix .gz URI with index files at the corresponding URIs</option> |
| 557 </param> | 556 </param> |
| 558 <when value="history"> | 557 <when value="history"> |
| 559 <repeat name="refgenomes" title="PAF reference comparison genome used to make the PAF"> | 558 <repeat name="refgenomes" title="PAF reference comparison genome used to make the PAF" min="1"> |
| 560 <param label="@LABEL@" format="@FORMAT@" name="annotation" multiple="True" optional="true" type="data" /> | 559 <param label="@LABEL@" format="@FORMAT@" name="annotation" multiple="True" optional="true" type="data" /> |
| 561 <param label="Short name for track display" name="annoname" type="text" help="No spaces allowed here"> | 560 <param label="Short name for track display" name="annoname" type="text" help="No spaces allowed here"> |
| 562 <sanitizer invalid_char="_"> | 561 <sanitizer invalid_char="_"> |
| 563 <valid initial="string.printable" > | 562 <valid initial="string.printable" > |
| 564 <remove value=" " /> | 563 <remove value=" " /> |
| 566 </sanitizer> | 565 </sanitizer> |
| 567 </param> | 566 </param> |
| 568 </repeat> | 567 </repeat> |
| 569 </when> | 568 </when> |
| 570 <when value="uri"> | 569 <when value="uri"> |
| 571 <repeat name="refgenomes" title="PAF reference comparison genome URI"> | 570 <repeat name="refgenomes" title="PAF reference comparison genome URI" min="1"> |
| 572 <param label="@LABEL@" name="annotation" type="text" /> | 571 <param label="@LABEL@" name="annotation" type="text" /> |
| 573 <param label="Short name for track display" name="annoname" type="text" > | 572 <param label="Short name for this reference" name="annoname" type="text" help="Short names take less track space"> |
| 574 <sanitizer invalid_char="_"> | 573 <sanitizer invalid_char="_"> |
| 575 <valid initial="string.printable" > | 574 <valid initial="string.printable" > |
| 576 <remove value="'" /> | 575 <remove value="'" /> |
| 577 </valid> | 576 </valid> |
| 578 </sanitizer> | 577 </sanitizer> |