comparison maf2bed.pl @ 61:e7a6f7a7148d draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 6dde5ad41d63730085116ab2c9a9d3e500a760e4-dirty

60:81d535970196

        $start = $line[2];
        $end = $line[2] + $line[3];
        s/^s //;
        s/ +/:/g;
        my $temp = $_;
        $buffer = $buffer eq '' ? $temp : "$buffer,$temp";
    }
    elsif (/^a/) {
        $score = +(s/^a score=//);
        if($id > 0) {
            print $chrom, $start, $end, "$ARGV[0]_$id", $score, $buffer;

61:e7a6f7a7148d

        $start = $line[2];
        $end = $line[2] + $line[3];
        s/^s //;
        s/ +/:/g;
        my $temp = $_;
        $buffer = $buffer eq '' ? $temp : "$buffer;$temp";
    }
    elsif (/^a/) {
        $score = +(s/^a score=//);
        if($id > 0) {
            print $chrom, $start, $end, "$ARGV[0]_$id", $score, $buffer;