comparison jbrowse2.py @ 11:f5ce31c2f47d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4baeb144cafbb61ae0587cce731066129097c168

10:c60b17456297

        # The view for the assembly we're adding
        view_json = {"type": "LinearGenomeView", "tracks": tracks_data}

        refName = None
        if data.get("defaultLocation", ""):
            loc_match = re.search(r"^(\w+):(\d+)\.+(\d+)$", data["defaultLocation"])
            if loc_match:
                refName = loc_match.group(1)
                start = int(loc_match.group(2))
                end = int(loc_match.group(3))
        elif self.genome_name is not None:

11:f5ce31c2f47d

        # The view for the assembly we're adding
        view_json = {"type": "LinearGenomeView", "tracks": tracks_data}

        refName = None
        if data.get("defaultLocation", ""):
            loc_match = re.search(r"^(\w.+):(\d+)\.+(\d+)$", data["defaultLocation"])
            if loc_match:
                refName = loc_match.group(1)
                start = int(loc_match.group(2))
                end = int(loc_match.group(3))
        elif self.genome_name is not None: