comparison macros.xml @ 112:56f9a6e0fe80 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 566509061b742b73c8dd1a1db6813fbf6a7a3792

111:0a532764dcfa

                <when value="form"/>
            </conditional>
            <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/>
            <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/>
            <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/>
            <param name="bpPerPx" type="integer" value="50" label="Base pairs per display pixel for default view" help="Make the default window show more or less BP of sequence. For some reason not automatable in JB2, sorry"/>
            <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/>
            <param name="primary_color" type="color" value="#0D233F" label="Primary color">
                <sanitizer>
                    <valid initial="string.ascii_letters,string.digits">
                        <add value="#"/>

            <param name="display" type="select" label="Display style" help="How the track will be displayed by default">
                <option value="LinearBasicDisplay" selected="true">LinearBasicDisplay</option>
                <option value="LinearPileupDisplay">LinearPileupDisplay - good for dense tracks at scale</option>
                <option value="LinearArcDisplay">LinearArcDisplay</option>
            </param>
            <param name="usebedscore" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Use column 5 as a score for the display if bed format"/>            
        </section>
    </xml>
    <xml name="track_styling_feature">
        <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false">
            <conditional name="track_style">

112:56f9a6e0fe80

                <when value="form"/>
            </conditional>
            <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/>
            <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/>
            <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/>
            <param name="bpPerPx" type="integer" min="1" value="50" label="Base pairs per display pixel for default view" help="Make the default window show more or less BP of sequence. For some reason not automatable in JB2, sorry"/>
            <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/>
            <param name="primary_color" type="color" value="#0D233F" label="Primary color">
                <sanitizer>
                    <valid initial="string.ascii_letters,string.digits">
                        <add value="#"/>

            <param name="display" type="select" label="Display style" help="How the track will be displayed by default">
                <option value="LinearBasicDisplay" selected="true">LinearBasicDisplay</option>
                <option value="LinearPileupDisplay">LinearPileupDisplay - good for dense tracks at scale</option>
                <option value="LinearArcDisplay">LinearArcDisplay</option>
            </param>
            <param name="usebedscore" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Use column 5 as a score for the display if bed format"
            help="The *Bigwig extremes to bed features* tool generates bed files with scores 1 or -1. This option renders them red and blue"/>            
        </section>
    </xml>
    <xml name="track_styling_feature">
        <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false">
            <conditional name="track_style">