Mercurial > repos > fubar > jbrowse2
diff test-data/merlin_tab.maf @ 86:0fae1d68347f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit f09abc1f5ef8d261dff2d1b0063fff99a1b25f93
| author | fubar |
|---|---|
| date | Wed, 10 Apr 2024 06:08:39 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/merlin_tab.maf Wed Apr 10 06:08:39 2024 +0000 @@ -0,0 +1,37 @@ +##maf version=1 scoring=lastz.v1.04.22 +# lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple +# +# hsp_threshold = 3000 +# gapped_threshold = 3000 +# x_drop = 910 +# y_drop = 9400 +# gap_open_penalty = 400 +# gap_extend_penalty = 30 +# A C G T +# A 91 -114 -31 -123 +# C -114 100 -125 -31 +# G -31 -125 100 -114 +# T -123 -31 -114 91 +a score=5703 +s Merlin.Merlin 1320 60 + 172788 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT +s Merlin1.Merlin 0 60 + 60 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT + +a score=5595 +s Merlin.Merlin 4020 60 + 172788 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT +s Merlin2.Merlin 0 60 + 60 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT + +a score=5667 +s Merlin.Merlin 5220 60 + 172788 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT +s Merlin3.Merlin 0 60 + 60 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT + +a score=5640 +s Merlin.Merlin 7740 60 + 172788 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT +s Merlin4.Merlin 0 60 + 60 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT + +a score=5649 +s Merlin.Merlin 9720 60 + 172788 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG +s Merlin5.Merlin 0 60 + 60 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG + +a score=5658 +s Merlin.Merlin 10380 60 + 172788 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA +s Merlin6.Merlin 0 60 + 60 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA