diff jb2_urlconf.py @ 47:3e53204c2419 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 3a43e9e0ffce0966101203102e769d1ced28618a-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/jb2_urlconf.py	Wed Mar 06 00:23:02 2024 +0000
@@ -0,0 +1,16 @@
+inconf = open('config.json', 'r').readlines()
+with open('config.json.local', 'w') as bak:
+    bak.write('\n'.join(inconf))
+urlbase = "https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/hum/"
+utag = '"uri":'
+for i, row in enumerate(inconf):
+    ispath = False
+    if row.strip().startswith(utag):
+            ispath = True
+            parth = row.split(utag)[1].strip()
+            inconf[i] = '%s%s' % (urlbase, parth)
+with open('config.json', 'w') as outconf:
+    outconf.write('\n'.join(inconf))
+
+
+