Mercurial > repos > fubar > jbrowse2

diff jbrowse2.xml @ 36:5f39f745682f draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 80b849766a962bac4bd0bb8cb69c118cc42699cd-dirty
author fubar
date Thu, 29 Feb 2024 00:47:58 +0000
parents 15da358c3108
children 07849bf248e3
line wrap: on
line diff
--- a/jbrowse2.xml	Wed Feb 28 10:08:57 2024 +0000
+++ b/jbrowse2.xml	Thu Feb 29 00:47:58 2024 +0000
@@ -140,11 +140,11 @@
                     <options>
 
                     #if str($track.data_format.data_format_select) == "bam":
-                        <pileup>
+                        <bam>
                             #for $dataset in $track.data_format.annotation:
                                 <bam_index>${dataset.metadata.bam_index}</bam_index>
                             #end for
-                        </pileup>
+                        </bam>
                     #else if str($track.data_format.data_format_select) == "cram":
                         <cram>
                             <cram_indices>