diff test-data/vcf/merlinold.vcf @ 131:69c6ea16c148 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 3cf9ec268c0719caf060b7d6bf5c0159909c348a

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/vcf/merlinold.vcf	Sat Oct 12 23:11:22 2024 +0000
@@ -0,0 +1,23 @@
+##fileformat=VCFv4.0
+##fileDate=20090805
+##source=myImputationProgramV3.1
+##reference=1000GenomesPilot-NCBI36
+##phasing=partial
+##INFO=<ID=NS,Number=1,Type=Integer,Description="Number	of	Samples	With	Data">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total	Depth">
+##INFO=<ID=AF,Number=.,Type=Float,Description="Allele	Frequency">
+##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral	Allele">
+##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP	membership,	build	129">
+##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2	membership">
+##FILTER=<ID=q10,Description="Quality	below	10">
+##FILTER=<ID=s50,Description="Less	than	50%	of	samples	have	data">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype	Quality">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read	Depth">
+##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype	Quality">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA00001	NA00002	NA00003
+Merlin	61	rs6054257	G	A	29	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ	0|0:48:1:51,51	1|0:48:8:51,51	1/1:43:5:.,.
+Merlin	122	.	T	A	3	q10	NS=3;DP=11;AF=0.017	GT:GQ:DP:HQ	0|0:49:3:58,50	0|1:3:5:65,3	0/0:41:3
+Merlin	488	rs6040355	A	G,T	67	PASS	NS=2;DP=10;AF=0.333,0.667;AA=T;DB	GT:GQ:DP:HQ	1|2:21:6:23,27	2|1:2:0:18,2	2/2:35:4
+Merlin	549	.	T	.	47	PASS	NS=3;DP=13;AA=T	GT:GQ:DP:HQ	0|0:54:7:56,60	0|0:48:4:51,51	0/0:61:2
+Merlin	1098	microsat1		G,GTACT	50	PASS	NS=3;DP=9;AA=G	GT:GQ:DP	0/1:35:4	0/2:17:2	1/1:40:3