Mercurial > repos > fubar > jbrowse2
diff jbrowse2.xml @ 57:94264fe60478 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 4b5df41484f6bdf316edaf95b53c92d328ec1674-dirty
| author | fubar |
|---|---|
| date | Thu, 21 Mar 2024 08:01:42 +0000 |
| parents | d6b0feb22584 |
| children | 0e592dcaeb7f |
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--- a/jbrowse2.xml Tue Mar 19 02:33:40 2024 +0000 +++ b/jbrowse2.xml Thu Mar 21 08:01:42 2024 +0000 @@ -194,7 +194,18 @@ </files> <options> - + <style> + #if str($track.data_format.data_format_select) in ["gff", "bed", "vcf", "paf", "maf", "blastxml"]: + <type>${track.data_format.jbstyle.track_style.display}</type> + #if str($track.data_format.jbstyle.track_style.display) in ["LinearBasicDisplay", "LinearVariantDisplay"]: + <trackShowLabels>${track.data_format.jbstyle.track_style.show_labels}</trackShowLabels> + <trackShowDescriptions>${track.data_format.jbstyle.track_style.show_descriptions}</trackShowDescriptions> + #end if + #end if + #if str($track.data_format.data_format_select) in ["bam", "cram"]: + <type>"LinearAlignmentsDisplay"</type> + #end if + </style> #if str($track.data_format.data_format_select) == "bam": <bam> #for $dataset in $track.data_format.useuri.annotation: @@ -349,6 +360,7 @@ name="is_protein" truevalue="true" falsevalue="false" /> + <expand macro="track_styling_feature" /> <expand macro="track_visibility" /> </when> <when value="vcf"> @@ -373,6 +385,7 @@ </when> <when value="false" /> </conditional> + <expand macro="track_styling_feature" /> <expand macro="track_visibility" /> </when> <when value="bam"> @@ -381,6 +394,7 @@ </when> <when value="bed"> <expand macro="input_conditional" label="BED Track Data" format="bed" /> + <expand macro="track_styling_feature" /> <expand macro="track_visibility" /> </when> <when value="cram"> @@ -389,6 +403,7 @@ </when> <when value="maf"> <expand macro="input_conditional" label="MAF Track Data" format="maf" /> + <expand macro="track_styling_feature" /> <expand macro="track_visibility" /> </when> <when value="bigwig">