Mercurial > repos > fubar > jbrowse2

diff jbrowse2.py @ 28:9a5c409f33f4 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit e65f2527a97a04173091d28b939e42101582bc56-dirty
author fubar
date Wed, 07 Feb 2024 22:51:54 +0000
parents 4ff1ed2065cc
children f728cf0df71d
line wrap: on
line diff
--- a/jbrowse2.py	Wed Feb 07 22:37:10 2024 +0000
+++ b/jbrowse2.py	Wed Feb 07 22:51:54 2024 +0000
@@ -1284,9 +1284,9 @@
                 refName = loc_match.group(1)
                 drdict["refName"] = refName
                 if loc_match.group(2) > "":
-                    drdict["start"] = int(loc_match.group(2).replace(',',''))
+                    drdict["start"] = int(loc_match.group(2).replace(",", ""))
                 if loc_match.group(3) > "":
-                    drdict["end"] = int(loc_match.group(3).replace(',',''))
+                    drdict["end"] = int(loc_match.group(3).replace(",", ""))
             else:
                 logging.info(
                     "@@@ regexp could not match contig:start..end in the supplied location %s - please fix"