Mercurial > repos > fubar > jbrowse2
diff galaxy.xml @ 95:a0c848f00363 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5903fd8076687ad01a7cf0a522b954106ac6579a
| author | fubar |
|---|---|
| date | Wed, 24 Apr 2024 03:25:23 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/galaxy.xml Wed Apr 24 03:25:23 2024 +0000 @@ -0,0 +1,607 @@ +<?xml version="1.0"?> +<root> + <metadata> + <general> + <defaultLocation></defaultLocation> + <zipOut>true</zipOut> + <analytics>false</analytics> + <primary_color>#0d233f</primary_color> + <secondary_color>#721e63</secondary_color> + <tertiary_color>#135560</tertiary_color> + <quaternary_color>#ffb11d</quaternary_color> + <font_size>10</font_size> + <session_name>New test session</session_name> + </general> + <galaxyUrl>http://localhost:8080</galaxyUrl> + </metadata> + <assembly> + <metadata> + <genomes> + <genome path="/tmp/tmpaivwlly7/files/2/6/5/dataset_265ba9ba-75c3-49ca-be12-7c34a7b56380.dat" label="Merlin" useuri="no"> + <metadata> + + <dataset id="e3f2f10afcaf3f83" + hid="1" + size="171.6 KB" + edam_format="format_1929" + file_ext="fasta" + dname = "Merlin" + /> + <history + user_email="planemo@galaxyproject.org" + user_id="1" + display_name="Tool Test History for jbrowse2/2.10.1+galaxy2_15-0"/> + id="e3f2f10afcaf3f83" + /> + <metadata + dbkey="?" + data_lines="2881" + sequences="1" + /> + <tool + tool_id="upload1" + tool_version="1.1.7" + /> + + </metadata> + </genome> + </genomes> + </metadata> + <tracks> + <track cat="Assembly properties" format="gff" visibility="default_on"> + <files> + <trackFile path="/tmp/tmpaivwlly7/files/8/d/6/dataset_8d6c2542-1af4-4bd1-ab96-98e31f60a542.dat" ext="gff3" label="merlin.gff3" useuri="no"> + <metadata> + + <dataset id="6e131a28d20492ec" hid="2" + size="5.0 KB" + edam_format="format_1975" + file_ext="gff3" /> + <history id="e3f2f10afcaf3f83" + user_email="planemo@galaxyproject.org" + user_id="1" + display_name="Tool Test History for jbrowse2/2.10.1+galaxy2_15-0"/> + + <metadata + dbkey="?" + data_lines="9" + comment_lines="10" + columns="9" + column_names="[]" + delimiter="__tc__" + attributes="23" + /> + <tool + tool_id="upload1" + tool_version="1.1.7" + /> + </metadata> + </trackFile> + </files> + <options> + <style> + <type>LinearBasicDisplay</type> + <trackShowLabels>false</trackShowLabels> + <trackShowDescriptions>false</trackShowDescriptions> + </style> + <gff> + </gff> + </options> + </track> + <track cat="Assembly properties" format="bigwig" visibility="default_on"> + <files> + <trackFile path="/tmp/tmpaivwlly7/files/b/e/0/dataset_be0fc51e-5417-47ca-bfd0-6bc92397dbd5.dat" ext="bigwig" label="merlin.bw" useuri="no"> + <metadata> + + <dataset id="76e9de2bd038793f" hid="3" + size="81.6 KB" + edam_format="format_3006" + file_ext="bigwig" /> + <history id="e3f2f10afcaf3f83" + user_email="planemo@galaxyproject.org" + user_id="1" + display_name="Tool Test History for jbrowse2/2.10.1+galaxy2_15-0"/> + + <metadata + dbkey="?" + /> + <tool + tool_id="upload1" + tool_version="1.1.7" + /> + </metadata> + </trackFile> + </files> + <options> + <style> + </style> + </options> + </track> + <track cat="Assembly properties" format="bed" visibility="default_on"> + <files> + <trackFile 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path="/tmp/tmpaivwlly7/files/6/b/d/dataset_6bd63ebf-abbf-4225-b2a9-50021936ba0b.dat" ext="cram" label="merlin.cram" useuri="no"> + <metadata> + + <dataset id="536241263d9d8f60" hid="6" + size="10.9 KB" + edam_format="format_3462" + file_ext="cram" /> + <history id="e3f2f10afcaf3f83" + user_email="planemo@galaxyproject.org" + user_id="1" + display_name="Tool Test History for jbrowse2/2.10.1+galaxy2_15-0"/> + + <metadata + dbkey="?" + cram_version="3.0" + cram_index="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX" + /> + <tool + tool_id="upload1" + tool_version="1.1.7" + /> + </metadata> + </trackFile> + </files> + <options> + <style> + <type>LinearAlignmentsDisplay</type> + </style> + <cram> + <cram_index> + /tmp/tmpaivwlly7/files/6/b/d/dataset_6bd63ebf-abbf-4225-b2a9-50021936ba0b.dat:/tmp/tmpaivwlly7/files/_metadata_files/6/d/8/metadata_6d808e2c-4839-4fbd-be66-dddc3e317c0e.dat, + </cram_index> + </cram> + </options> + </track> + <track cat="Assembly properties" format="bam" 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