Mercurial > repos > fubar > jbrowse2

diff jbrowse2.xml @ 122:ae07c55ab96b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit a9124072bc71dd670ee58ff8e4846e14d6d603ec
author fubar
date Fri, 04 Oct 2024 04:07:03 +0000
parents 794aecef8327
children 137e08517410
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--- a/jbrowse2.xml	Thu Oct 03 06:07:18 2024 +0000
+++ b/jbrowse2.xml	Fri Oct 04 04:07:03 2024 +0000
@@ -21,7 +21,7 @@
     <command detect_errors="aggressive"><![CDATA[
 mkdir -p '$output.files_path' &&
 cp '$trackxml' '$output.files_path/galaxy.xml' &&
-export JBROWSE2_PATH=\$(dirname \$(which jbrowse))/../opt/jbrowse2 &&
+export JBROWSE2_PATH=\$(realpath \$(dirname \$(which jbrowse))/../opt/jbrowse2) &&
 #if $jbgen.ucol.formcoll=="collect":
     python '$__tool_directory__/autogenJB2.py'
     #for $key in $autoCollection.keys():