diff macros.xml @ 98:b1260bca5fdc draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 44d8fc559ecf5463a8f753561976fa26686c96f6

--- a/macros.xml	Sat Jun 01 05:37:13 2024 +0000
+++ b/macros.xml	Wed Jun 05 10:00:07 2024 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.11.0</token>
+    <token name="@TOOL_VERSION@">2.11.1</token>
     <xml name="edamInc">
         <edam_topics>
             <edam_topic>topic_3307</edam_topic>
@@ -13,7 +13,7 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">jbrowse2</requirement>
-            <requirement type="package" version="1.81">biopython</requirement>
+            <requirement type="package" version="1.82">biopython</requirement>
             <requirement type="package" version="0.7.1">bcbio-gff</requirement>
             <requirement type="package" version="1.19">samtools</requirement>
             <requirement type="package" version="6.0.1">pyyaml</requirement>
@@ -25,24 +25,15 @@
         </requirements>
     </xml>
     <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token>
-    <token name="@WRAPPER_VERSION@">galaxy2</token>
-    <token name="@ATTRIBUTION@"><![CDATA[
-**Attribution**
-This Galaxy tool relies on the JBrowse2, maintained by the GMOD Community. The Galaxy wrapper is 
-maintained by Ross Lazarus and Bjoern Gruening until the IUC complete their own.
-]]>
-    </token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <xml name="creators">
         <creator>
-            <person givenName="Helena" familyName="Rasche" url="https://github.com/hexylena" />
-            <person givenName="Anthony" familyName="Bretaudeau" url="https://github.com/abretaud" />
-            <person givenName="Ross" familyName="Lazarus" url="https://github.com/fubar2/" />
+            <person givenName="Helena" familyName="Rasche" url="https://github.com/hexylena"/>
+            <person givenName="Anthony" familyName="Bretaudeau" url="https://github.com/abretaud"/>
+            <person givenName="Ross" familyName="Lazarus" url="https://github.com/fubar2/"/>
         </creator>
     </xml>
-    <xml name="genome_selector"
-        token_help=""
-        token_label="Fasta sequences"
-        token_optional="False" >
+    <xml name="genome_selector" token_help="" token_label="Fasta sequences" token_optional="False">
         <conditional name="reference_genome">
             <param name="genome_type_select" type="select" label="Reference genome to display" help="Built-in references">
                 <option selected="True" value="indexed">Use a built-in genome</option>
@@ -112,12 +103,11 @@
                 <when value="collect">
                     <param name="autoCollection" type="data_collection" label="Collection of bed, bam and other track files"/>
                 </when>
-                <when value="form">
-                </when>
+                <when value="form"/>
             </conditional>
-            <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing " help="Default is to make an interactive browser appear when the 'eye' icon is activated"/>
+            <param name="zipOut" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Create a zip archive for downloading rather than viewing" help="Default is to make an interactive browser appear when the 'eye' icon is activated"/>
             <param name="defaultLocation" type="text" value="" label="Subset to display to new users" help="Initial subset to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678"/>
-            <param name="session_name" type="text" value="New JB2 session" label="Session name" help="Displayed at the top of the window"/>
+            <param name="session_name" type="text" value="New JBrowse2 session" label="Session name" help="Displayed at the top of the window"/>
             <param name="enableAnalytics" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable analytics" help="Will send usage data to Google Analytics, see https://github.com/GMOD/jbrowse-components/issues/1166"/>
             <param name="primary_color" type="color" value="#0D233F" label="Primary color">
                 <sanitizer>