diff jbrowse2.xml @ 15:cce8dacb240f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 1a20cf06627d429a211427753f223467188dbe7f-dirty

--- a/jbrowse2.xml	Mon Jan 22 12:05:09 2024 +0000
+++ b/jbrowse2.xml	Thu Jan 25 07:39:41 2024 +0000
@@ -33,7 +33,7 @@
             #if str($reference_genome.genome_type_select) == "indexed":
               <genome path="${reference_genome.genomes.fields.path}" label="${reference_genome.genomes.fields.name}">
                   <metadata />
-              </genome>s
+              </genome>
             #else
               <genome path="$reference_genome.genome" label="${reference_genome.genome.element_identifier}">
                 <metadata>
@@ -297,12 +297,12 @@
                     </when>
 
                     <when value="synteny">
-                        <param label="Other genome sequence"
+                        <param label="Comparison genome sequence" help="Paf must use this as the reference to map the real reference sequence"
                             format="fasta"
                             name="synteny_genome"
                             type="data" />
 
-                        <expand macro="input_conditional" label="Synteny data" format="paf" />
+                        <expand macro="input_conditional" label="Synteny data" format="paf" help="Make paf with minimap2 mapping real reference onto desired syntenic reference"/>
                         <expand macro="track_visibility" />
                     </when>