diff jbrowse2.xml @ 54:d6b0feb22584 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c

--- a/jbrowse2.xml	Thu Mar 07 09:23:06 2024 +0000
+++ b/jbrowse2.xml	Thu Mar 14 00:59:36 2024 +0000
@@ -1,4 +1,4 @@
- <tool id="jbrowse2" name="jbrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@_6" profile="22.05">
+ <tool id="jbrowse2" name="jbrowse2" version="@TOOL_VERSION@+@WRAPPER_VERSION@_7" profile="22.05">
     <description>genome browser</description>
     <macros>
         <import>macros.xml</import>
@@ -81,7 +81,7 @@
               <genome path="${reference_genome.genome.fields.path}" label="${reference_genome.genome.fields.name}" useuri="no">
                   <metadata>
                      <dataset
-                      dname = "${reference_genome.genome.refname}" />
+                      dname = "${reference_genome.genome.fields.name}" />
                   </metadata>
               </genome>
             #else
@@ -320,8 +320,8 @@
                         <option value="bed">BED track</option>
                         <option value="bigwig">BigWig track</option>
                         <option value="blastxml">Blast XML track - converted to GFF</option>
+                        <option value="cool">HiC as cool/mcool/scool format files</option>
                         <option value="cram">CRAM</option>
-                        <option value="cool">HiC as cool/mcool/scool format files</option>
                         <option value="gff">GFF/GFF3 feature track</option>
                         <option value="hic">HiC as juicebox_hic format file. Tabular hic_matrix will NOT work.</option>
                         <option value="maf">Multiple alignment format. Reference name must match the MAF name exactly to work correctly</option>