diff readme.rst @ 54:d6b0feb22584 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 53aab6394c715dc2d7fdd9188d6c9834e0516b5c
author fubar
date Thu, 14 Mar 2024 00:59:36 +0000
parents f350467f9433
children e7a6f7a7148d
line wrap: on
line diff
--- a/readme.rst	Thu Mar 07 09:23:06 2024 +0000
+++ b/readme.rst	Thu Mar 14 00:59:36 2024 +0000
@@ -1,5 +1,12 @@
 JBrowse2 in Galaxy
 ==================
+Added Mar 8:
+ - URI as data source for tracks
+ - Autogenerate from a collection now builtin to advanced options - ignores form
+    - potentially thousands of tracks without filling in any form...
+ - Cram now working
+ - Multigenome pafs from mashmap working properly..
+ - TODO reuse code for references for paf references to allow URI and builtin genomes
 
 Added Mar 3:
  - optional tracks at last for JB2
@@ -24,7 +31,7 @@
 JBrowse2 is a fast, embeddable genome browser built completely with
 JavaScript and HTML5
 
-Thus, it makes an ideal fit with Galaxy, especially for use as a
+Makes an ideal fit with Galaxy, especially for use as a
 workflow summary. E.g. annotate a genome, then visualise all of the
 associated datasets as an interactive HTML page. This tool MUST be whitelisted
 (or ``sanitize_all_html=False`` in galaxy.ini) to function correctly.