Mercurial > repos > fubar > jbrowse2
diff autogenJB2.xml @ 40:e1a3d3221ed3 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78
author | fubar |
---|---|
date | Fri, 01 Mar 2024 02:22:44 +0000 |
parents | bc57164eb270 |
children | 4181e97c70a7 |
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--- a/autogenJB2.xml Fri Mar 01 01:03:09 2024 +0000 +++ b/autogenJB2.xml Fri Mar 01 02:22:44 2024 +0000 @@ -66,15 +66,12 @@ </tests> <help><![CDATA[ -JBrowse2-in-Galaxy -================== +Autogenerated JBrowse2 +====================== -JBrowse2-in-Galaxy offers a highly configurable, workflow-compatible -alternative to JBrowse1-in-Galaxy and Trackster. +Given a collection of datatypes suited for making JB2 tracks, this tool will create a working JBrowse2 configuration. +A paf track requires a nested collection with the paf file and all the genomes used in creating it. -Compared to JBrowse1-in-Galaxy, there is no support for alternative codons for unusual genomes, -and detailed track styling is not yet implemented. Send code. -JBrowse1 development has now ceased in favour of JBrowse2. Use and local viewing ===================== @@ -109,10 +106,6 @@ The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC <https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer. -It is maintained by https://github.com/fubar2 who you can help you -with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic, -and disturbed by the distinctly coercive approach to introducing new code, -compared to the more usual method of providing a working PR. Options -------