diff autogenJB2.xml @ 40:e1a3d3221ed3 draft

planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78
author fubar
date Fri, 01 Mar 2024 02:22:44 +0000
parents bc57164eb270
children 4181e97c70a7
line wrap: on
line diff
--- a/autogenJB2.xml	Fri Mar 01 01:03:09 2024 +0000
+++ b/autogenJB2.xml	Fri Mar 01 02:22:44 2024 +0000
@@ -66,15 +66,12 @@
 </tests>
     <help><![CDATA[
 
-JBrowse2-in-Galaxy
-==================
+Autogenerated JBrowse2
+======================
 
-JBrowse2-in-Galaxy offers a highly configurable, workflow-compatible
-alternative to JBrowse1-in-Galaxy and Trackster.
+Given a collection of datatypes suited for making JB2 tracks, this tool will create a working JBrowse2 configuration.
+A paf track requires a nested collection with the paf file and all the genomes used in creating it.
 
-Compared to JBrowse1-in-Galaxy, there is no support for alternative codons for unusual genomes,
-and detailed track styling is not yet implemented. Send code.
-JBrowse1 development has now ceased in favour of JBrowse2.
 
 Use and local viewing
 =====================
@@ -109,10 +106,6 @@
 
 The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC
 <https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer.
-It is maintained by https://github.com/fubar2 who you can help you
-with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic,
-and disturbed by the distinctly coercive approach to introducing new code,
-compared to the more usual method of providing a working PR.
 
 Options
 -------