Mercurial > repos > fubar > jbrowse2
view test-data/all_fasta.loc @ 38:07849bf248e3 draft
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit a74e469a81b38c7142f63de510ae31d3754d1767
author | fubar |
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date | Fri, 01 Mar 2024 00:40:38 +0000 |
parents | c60b17456297 |
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#This file lists the locations and dbkeys of all the fasta files #under the "genome" directory (a directory that contains a directory #for each build). The script extract_fasta.py will generate the file #all_fasta.loc. This file has the format (white space characters are #TAB characters): # #<unique_build_id> <dbkey> <display_name> <file_path> # #So, all_fasta.loc could look something like this: # #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa # #Your all_fasta.loc file should contain an entry for each individual #fasta file. So there will be multiple fasta files for each build, #such as with hg19 above. # merlin merlin Merlin ${__HERE__}/merlin.fa