view x/config.json @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

{
  "configuration": {
    "disableAnalytics": false,
    "theme": {
      "palette": {
        "primary": {
          "main": "#0d233f"
        },
        "secondary": {
          "main": "#721e63"
        },
        "tertiary": {
          "main": "#135560"
        },
        "quaternary": {
          "main": "#ffb11d"
        }
      },
      "typography": {
        "fontSize": 10
      }
    }
  },
  "defaultSession": {
    "name": "New JBrowse2 session",
    "views": [
      {
        "type": "LinearGenomeView",
        "offsetPx": 0,
        "bpPerPx": 50,
        "minimized": false,
        "tracks": [
          {
            "type": "QuantitativeTrack",
            "configuration": "me.r.l.i-n.bw_0",
            "displays": [
              {
                "type": "LinearWiggleDisplay",
                "displayId": "me.r.l.i-n.bw_0-LinearWiggleDisplay",
                "color": "#135560",
                "autoscale": "globalsd",
                "resolution": 1,
                "summaryScoreMode": "whiskers",
                "filled": false,
                "scaleType": "linear",
                "displayCrossHatches": false,
                "configuration": "me.r.l.i-n.bw_0-LinearWiggleDisplay"
              }
            ]
          }
        ],
        "displayedRegions": [
          {
            "reversed": false,
            "assemblyName": "merlin.fa",
            "refName": "Merlin",
            "start": 0,
            "end": 172788
          }
        ]
      }
    ]
  },
  "tracks": [
    {
      "type": "QuantitativeTrack",
      "trackId": "me.r.l.i-n.bw_0",
      "name": "me.r.l.i-n.bw_0",
      "category": [
        "Default"
      ],
      "assemblyNames": [
        "merlin.fa"
      ],
      "adapter": {
        "type": "BigWigAdapter",
        "bigWigLocation": {
          "uri": "me.r.l.i-n.bw_0"
        }
      },
      "displays": [
        {
          "type": "LinearWiggleDisplay",
          "displayId": "me.r.l.i-n.bw_0-LinearWiggleDisplay"
        }
      ],
      "style": {
        "type": "LinearWiggleDisplay",
        "displayId": "me.r.l.i-n.bw_0-LinearWiggleDisplay",
        "color": "#135560",
        "autoscale": "globalsd",
        "resolution": 1,
        "summaryScoreMode": "whiskers",
        "filled": false,
        "scaleType": "linear",
        "displayCrossHatches": false,
        "configuration": "me.r.l.i-n.bw_0-LinearWiggleDisplay"
      }
    }
  ],
  "assemblies": [
    {
      "name": "merlin.fa",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "merlin.fa",
        "adapter": {
          "type": "BgzipFastaAdapter",
          "fastaLocation": {
            "uri": "merlin.fa.fa.gz"
          },
          "faiLocation": {
            "uri": "merlin.fa.fa.gz.fai"
          },
          "gziLocation": {
            "uri": "merlin.fa.fa.gz.gzi"
          }
        }
      },
      "displays": [
        {
          "type": "LinearReferenceSequenceDisplay",
          "displayId": "merlin.fa-LinearReferenceSequenceDisplay"
        },
        {
          "type": "LinearGCContentDisplay",
          "displayId": "merlin.fa-LinearGCContentDisplay"
        }
      ]
    }
  ]
}