Mercurial > repos > fubar > jbrowse2


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React, { useEffect, useState } from 'react'\nimport { makeStyles } from 'tss-react/mui'\nimport {\n  Button,\n  Checkbox,\n  CircularProgress,\n  Container,\n  DialogActions,\n  DialogContent,\n  FormGroup,\n  FormControlLabel,\n  TextField,\n  Typography,\n} from '@mui/material'\nimport { observer } from 'mobx-react'\nimport { saveAs } from 'file-saver'\nimport { getConf } from '@jbrowse/core/configuration'\nimport copy from 'copy-to-clipboard'\nimport { Dialog } from '@jbrowse/core/ui'\nimport {\n  getSession,\n  reverse,\n  complement,\n  Feature,\n  Region,\n} from '@jbrowse/core/util'\nimport { formatSeqFasta } from '@jbrowse/core/util/formatFastaStrings'\n\n// icons\nimport { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons'\nimport GetAppIcon from '@mui/icons-material/GetApp'\n\n// locals\nimport { LinearGenomeViewModel } from '..'\n\nconst useStyles = makeStyles()({\n  dialogContent: {\n    width: '80em',\n  },\n  textAreaFont: {\n    fontFamily: 'Courier New',\n  },\n})\n\ntype LGV = LinearGenomeViewModel\n\n/**\n * Fetches and returns a list features for a given list of regions\n */\nasync function fetchSequence(\n  model: LGV,\n  regions: Region[],\n  signal?: AbortSignal,\n) {\n  const session = getSession(model)\n  const { leftOffset, rightOffset } = model\n\n  if (!leftOffset || !rightOffset) {\n    throw new Error('no offsets on model to use for range')\n  }\n\n  if (leftOffset.assemblyName !== rightOffset.assemblyName) {\n    throw new Error('not able to fetch sequences from multiple assemblies')\n  }\n  const { rpcManager, assemblyManager } = session\n  const assemblyName = leftOffset.assemblyName || rightOffset.assemblyName || ''\n  const assembly = assemblyManager.get(assemblyName)\n  if (!assembly) {\n    throw new Error(`assembly ${assemblyName} not found`)\n  }\n  const adapterConfig = getConf(assembly, ['sequence', 'adapter'])\n\n  const sessionId = 'getSequence'\n  return rpcManager.call(sessionId, 'CoreGetFeatures', {\n    adapterConfig,\n    regions,\n    sessionId,\n    signal,\n  }) as Promise<Feature[]>\n}\n\nconst GetSequenceDialog = observer(function ({\n  model,\n  handleClose,\n}: {\n  model: LGV\n  handleClose: () => void\n}) {\n  const { classes } = useStyles()\n  const [error, setError] = useState<unknown>()\n  const [sequenceChunks, setSequenceChunks] = useState<Feature[]>()\n  const [rev, setReverse] = useState(false)\n  const [copied, setCopied] = useState(false)\n  const [comp, setComplement] = useState(false)\n  const { leftOffset, rightOffset } = model\n  const loading = Boolean(sequenceChunks === undefined)\n\n  useEffect(() => {\n    const controller = new AbortController()\n\n    // eslint-disable-next-line @typescript-eslint/no-floating-promises\n    ;(async () => {\n      try {\n        // random note: the current selected region can't be a computed because\n        // it uses action on base1dview even though it's on the ephemeral\n        // base1dview\n        const selection = model.getSelectedRegions(leftOffset, rightOffset)\n        if (selection.length === 0) {\n          throw new Error('Selected region is out of bounds')\n        }\n        const chunks = await fetchSequence(model, selection, controller.signal)\n        setSequenceChunks(chunks)\n      } catch (e) {\n        console.error(e)\n        setError(e)\n      }\n    })()\n\n    return () => {\n      controller.abort()\n    }\n  }, [model, leftOffset, rightOffset])\n\n  const sequence = sequenceChunks\n    ? formatSeqFasta(\n        sequenceChunks.map(chunk => {\n          let chunkSeq = chunk.get('seq')\n          const chunkRefName = chunk.get('refName')\n          const chunkStart = chunk.get('start') + 1\n          const chunkEnd = chunk.get('end')\n          const loc = `${chunkRefName}:${chunkStart}-${chunkEnd}`\n          if (chunkSeq?.length !== chunkEnd - chunkStart + 1) {\n            throw new Error(\n              `${loc} returned ${chunkSeq.length.toLocaleString()} bases, but should have returned ${(\n                chunkEnd - chunkStart\n              ).toLocaleString()}`,\n            )\n          }\n\n          if (rev) {\n            chunkSeq = reverse(chunkSeq)\n          }\n          if (comp) {\n            chunkSeq = complement(chunkSeq)\n          }\n          return {\n            header: loc + (rev ? '-rev' : '') + (comp ? '-comp' : ''),\n            seq: chunkSeq,\n          }\n        }),\n      )\n    : ''\n\n  const sequenceTooLarge = sequence ? sequence.length > 1_000_000 : false\n\n  return (\n    <Dialog\n      maxWidth=\"xl\"\n      open\n      onClose={() => {\n        handleClose()\n        model.setOffsets()\n      }}\n      title=\"Reference sequence\"\n    >\n      <DialogContent>\n        {error ? (\n          <Typography color=\"error\">{`${error}`}</Typography>\n        ) : loading ? (\n          <Container>\n            Retrieving reference sequence...\n            <CircularProgress\n              style={{ marginLeft: 10 }}\n              size={20}\n              disableShrink\n            />\n          </Container>\n        ) : null}\n        <TextField\n          data-testid=\"rubberband-sequence\"\n          variant=\"outlined\"\n          multiline\n          minRows={5}\n          maxRows={10}\n          disabled={sequenceTooLarge}\n          className={classes.dialogContent}\n          fullWidth\n          value={\n            sequenceTooLarge\n              ? 'Reference sequence too large to display, use the download FASTA button'\n              : sequence\n          }\n          InputProps={{\n            readOnly: true,\n            classes: {\n              input: classes.textAreaFont,\n            },\n          }}\n        />\n        <FormGroup>\n          <FormControlLabel\n            control={\n              <Checkbox\n                value={rev}\n                onChange={event => {\n                  setReverse(event.target.checked)\n                }}\n              />\n            }\n            label=\"Reverse sequence\"\n          />\n          <FormControlLabel\n            control={\n              <Checkbox\n                value={comp}\n                onChange={event => {\n                  setComplement(event.target.checked)\n                }}\n              />\n            }\n            label=\"Complement sequence\"\n          />\n        </FormGroup>\n        <Typography style={{ margin: 10 }}>\n          Note: Check both boxes for the &quot;reverse complement&quot;\n        </Typography>\n      </DialogContent>\n      <DialogActions>\n        <Button\n          onClick={() => {\n            copy(sequence)\n            setCopied(true)\n            setTimeout(() => {\n              setCopied(false)\n            }, 500)\n          }}\n          disabled={loading || !!error || sequenceTooLarge}\n          color=\"primary\"\n          startIcon={<ContentCopyIcon />}\n        >\n          {copied ? 'Copied' : 'Copy to clipboard'}\n        </Button>\n        <Button\n          onClick={() => {\n            saveAs(\n              new Blob([sequence || ''], {\n                type: 'text/x-fasta;charset=utf-8',\n              }),\n              'jbrowse_ref_seq.fa',\n            )\n          }}\n          disabled={loading || !!error}\n          color=\"primary\"\n          startIcon={<GetAppIcon />}\n        >\n          Download FASTA\n        </Button>\n        <Button onClick={handleClose} variant=\"contained\">\n          Close\n        </Button>\n      </DialogActions>\n    </Dialog>\n  )\n})\n\nexport default GetSequenceDialog\n","export interface SeqChunk {\n  header: string\n  seq: string\n}\n/**\n * Returns sequence with new line every 80 characters\n * ref https://stackoverflow.com/a/51506718/2129219\n *\n * @param seqString -  string\n * @returns formatted sequence string\n */\nexport function formatFastaLines(seqString: string) {\n  return seqString.replaceAll(/(.{1,80})/g, '$1\\n').trimEnd()\n}\n/**\n * Formats the sequences chunks into Fasta format\n *\n * @param chunks - array of seq chunks of the form `{ header: string, seq: string }`\n * @returns formatted sequence in fasta format\n */\nexport function formatSeqFasta(chunks: SeqChunk[]) {\n  return chunks\n    .map(chunk => `>${chunk.header}\\n${formatFastaLines(chunk.seq)}`)\n    .join('\\n')\n}\n","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n  d: \"M19 9h-4V3H9v6H5l7 7zM5 18v2h14v-2z\"\n}), 'GetApp');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { keyframes, css, styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { getCircularProgressUtilityClass } from \"./circularProgressClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst SIZE = 44;\nconst circularRotateKeyframe = keyframes`\n  0% {\n    transform: rotate(0deg);\n  }\n\n  100% {\n    transform: rotate(360deg);\n  }\n`;\nconst circularDashKeyframe = keyframes`\n  0% {\n    stroke-dasharray: 1px, 200px;\n    stroke-dashoffset: 0;\n  }\n\n  50% {\n    stroke-dasharray: 100px, 200px;\n    stroke-dashoffset: -15px;\n  }\n\n  100% {\n    stroke-dasharray: 100px, 200px;\n    stroke-dashoffset: -125px;\n  }\n`;\n\n// This implementation is for supporting both Styled-components v4+ and Pigment CSS.\n// A global animation has to be created here for Styled-components v4+ (https://github.com/styled-components/styled-components/blob/main/packages/styled-components/src/utils/errors.md#12).\n// which can be done by checking typeof indeterminate1Keyframe !== 'string' (at runtime, Pigment CSS transform keyframes`` to a string).\nconst rotateAnimation = typeof circularRotateKeyframe !== 'string' ? css`\n        animation: ${circularRotateKeyframe} 1.4s linear infinite;\n      ` : null;\nconst dashAnimation = typeof circularDashKeyframe !== 'string' ? css`\n        animation: ${circularDashKeyframe} 1.4s ease-in-out infinite;\n      ` : null;\nconst useUtilityClasses = ownerState => {\n  const {\n    classes,\n    variant,\n    color,\n    disableShrink\n  } = ownerState;\n  const slots = {\n    root: ['root', variant, `color${capitalize(color)}`],\n    svg: ['svg'],\n    circle: ['circle', `circle${capitalize(variant)}`, disableShrink && 'circleDisableShrink']\n  };\n  return composeClasses(slots, getCircularProgressUtilityClass, classes);\n};\nconst CircularProgressRoot = styled('span', {\n  name: 'MuiCircularProgress',\n  slot: 'Root',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [styles.root, styles[ownerState.variant], styles[`color${capitalize(ownerState.color)}`]];\n  }\n})(memoTheme(({\n  theme\n}) => ({\n  display: 'inline-block',\n  variants: [{\n    props: {\n      variant: 'determinate'\n    },\n    style: {\n      transition: theme.transitions.create('transform')\n    }\n  }, {\n    props: {\n      variant: 'indeterminate'\n    },\n    style: rotateAnimation || {\n      animation: `${circularRotateKeyframe} 1.4s linear infinite`\n    }\n  }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n    props: {\n      color\n    },\n    style: {\n      color: (theme.vars || theme).palette[color].main\n    }\n  }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n  name: 'MuiCircularProgress',\n  slot: 'Svg',\n  overridesResolver: (props, styles) => styles.svg\n})({\n  display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n  name: 'MuiCircularProgress',\n  slot: 'Circle',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n  }\n})(memoTheme(({\n  theme\n}) => ({\n  stroke: 'currentColor',\n  variants: [{\n    props: {\n      variant: 'determinate'\n    },\n    style: {\n      transition: theme.transitions.create('stroke-dashoffset')\n    }\n  }, {\n    props: {\n      variant: 'indeterminate'\n    },\n    style: {\n      // Some default value that looks fine waiting for the animation to kicks in.\n      strokeDasharray: '80px, 200px',\n      strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n    }\n  }, {\n    props: ({\n      ownerState\n    }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n    style: dashAnimation || {\n      // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n      animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n    }\n  }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n  const props = useDefaultProps({\n    props: inProps,\n    name: 'MuiCircularProgress'\n  });\n  const {\n    className,\n    color = 'primary',\n    disableShrink = false,\n    size = 40,\n    style,\n    thickness = 3.6,\n    value = 0,\n    variant = 'indeterminate',\n    ...other\n  } = props;\n  const ownerState = {\n    ...props,\n    color,\n    disableShrink,\n    size,\n    thickness,\n    value,\n    variant\n  };\n  const classes = useUtilityClasses(ownerState);\n  const circleStyle = {};\n  const rootStyle = {};\n  const rootProps = {};\n  if (variant === 'determinate') {\n    const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n    circleStyle.strokeDasharray = circumference.toFixed(3);\n    rootProps['aria-valuenow'] = Math.round(value);\n    circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n    rootStyle.transform = 'rotate(-90deg)';\n  }\n  return /*#__PURE__*/_jsx(CircularProgressRoot, {\n    className: clsx(classes.root, className),\n    style: {\n      width: size,\n      height: size,\n      ...rootStyle,\n      ...style\n    },\n    ownerState: ownerState,\n    ref: ref,\n    role: \"progressbar\",\n    ...rootProps,\n    ...other,\n    children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n      className: classes.svg,\n      ownerState: ownerState,\n      viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n      children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n        className: classes.circle,\n        style: circleStyle,\n        ownerState: ownerState,\n        cx: SIZE,\n        cy: SIZE,\n        r: (SIZE - thickness) / 2,\n        fill: \"none\",\n        strokeWidth: thickness\n      })\n    })\n  });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n  // ┌────────────────────────────── Warning ──────────────────────────────┐\n  // │ These PropTypes are generated from the TypeScript type definitions. │\n  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │\n  // └─────────────────────────────────────────────────────────────────────┘\n  /**\n   * Override or extend the styles applied to the component.\n   */\n  classes: PropTypes.object,\n  /**\n   * @ignore\n   */\n  className: PropTypes.string,\n  /**\n   * The color of the component.\n   * It supports both default and custom theme colors, which can be added as shown in the\n   * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n   * @default 'primary'\n   */\n  color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n  /**\n   * If `true`, the shrink animation is disabled.\n   * This only works if variant is `indeterminate`.\n   * @default false\n   */\n  disableShrink: chainPropTypes(PropTypes.bool, props => {\n    if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n      return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n    }\n    return null;\n  }),\n  /**\n   * The size of the component.\n   * If using a number, the pixel unit is assumed.\n   * If using a string, you need to provide the CSS unit, for example '3rem'.\n   * @default 40\n   */\n  size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n  /**\n   * @ignore\n   */\n  style: PropTypes.object,\n  /**\n   * The system prop that allows defining system overrides as well as additional CSS styles.\n   */\n  sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n  /**\n   * The thickness of the circle.\n   * @default 3.6\n   */\n  thickness: PropTypes.number,\n  /**\n   * The value of the progress indicator for the determinate variant.\n   * Value between 0 and 100.\n   * @default 0\n   */\n  value: PropTypes.number,\n  /**\n   * The variant to use.\n   * Use indeterminate when there is no progress value.\n   * @default 'indeterminate'\n   */\n  variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n  return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;","import * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nimport composeClasses from '@mui/utils/composeClasses';\nimport capitalize from '@mui/utils/capitalize';\nimport useThemePropsSystem from \"../useThemeProps/index.js\";\nimport systemStyled from \"../styled/index.js\";\nimport createTheme from \"../createTheme/index.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst defaultTheme = createTheme();\nconst defaultCreateStyledComponent = systemStyled('div', {\n  name: 'MuiContainer',\n  slot: 'Root',\n  overridesResolver: (props, styles) => {\n    const {\n      ownerState\n    } = props;\n    return [styles.root, styles[`maxWidth${capitalize(String(ownerState.maxWidth))}`], ownerState.fixed && styles.fixed, ownerState.disableGutters && styles.disableGutters];\n  }\n});\nconst useThemePropsDefault = inProps => useThemePropsSystem({\n  props: inProps,\n  name: 'MuiContainer',\n  defaultTheme\n});\nconst useUtilityClasses = (ownerState, componentName) => {\n  const getContainerUtilityClass = slot => {\n    return generateUtilityClass(componentName, slot);\n  };\n  const {\n    classes,\n    fixed,\n    disableGutters,\n    maxWidth\n  } = ownerState;\n  const slots = {\n    root: ['root', maxWidth && `maxWidth${capitalize(String(maxWidth))}`, fixed && 'fixed', disableGutters && 'disableGutters']\n  };\n  return composeClasses(slots, getContainerUtilityClass, classes);\n};\nexport default function createContainer(options = {}) {\n  const {\n    // This will allow adding custom styled fn (for example for custom sx style function)\n    createStyledComponent = defaultCreateStyledComponent,\n    useThemeProps = useThemePropsDefault,\n    componentName = 'MuiContainer'\n  } = options;\n  const ContainerRoot = createStyledComponent(({\n    theme,\n    ownerState\n  }) => ({\n    width: '100%',\n    marginLeft: 'auto',\n    boxSizing: 'border-box',\n    marginRight: 'auto',\n    ...(!ownerState.disableGutters && {\n      paddingLeft: theme.spacing(2),\n      paddingRight: theme.spacing(2),\n      // @ts-ignore module augmentation fails if custom breakpoints are used\n      [theme.breakpoints.up('sm')]: {\n        paddingLeft: theme.spacing(3),\n        paddingRight: theme.spacing(3)\n      }\n    })\n  }), ({\n    theme,\n    ownerState\n  }) => ownerState.fixed && Object.keys(theme.breakpoints.values).reduce((acc, breakpointValueKey) => {\n    const breakpoint = breakpointValueKey;\n    const value = theme.breakpoints.values[breakpoint];\n    if (value !== 0) {\n      // @ts-ignore\n      acc[theme.breakpoints.up(breakpoint)] = {\n        maxWidth: `${value}${theme.breakpoints.unit}`\n      };\n    }\n    return acc;\n  }, {}), ({\n    theme,\n    ownerState\n  }) => ({\n    // @ts-ignore module augmentation fails if custom breakpoints are used\n    ...(ownerState.maxWidth === 'xs' && {\n      // @ts-ignore module augmentation fails if custom breakpoints are used\n      [theme.breakpoints.up('xs')]: {\n        // @ts-ignore module augmentation fails if custom breakpoints are used\n        maxWidth: Math.max(theme.breakpoints.values.xs, 444)\n      }\n    }),\n    ...(ownerState.maxWidth &&\n    // @ts-ignore module augmentation fails if custom breakpoints are used\n    ownerState.maxWidth !== 'xs' && {\n      // @ts-ignore module augmentation fails if custom breakpoints are used\n      [theme.breakpoints.up(ownerState.maxWidth)]: {\n        // @ts-ignore module augmentation fails if custom breakpoints are used\n        maxWidth: `${theme.breakpoints.values[ownerState.maxWidth]}${theme.breakpoints.unit}`\n      }\n    })\n  }));\n  const Container = /*#__PURE__*/React.forwardRef(function Container(inProps, ref) {\n    const props = useThemeProps(inProps);\n    const {\n      className,\n      component = 'div',\n      disableGutters = false,\n      fixed = false,\n      maxWidth = 'lg',\n      classes: classesProp,\n      ...other\n    } = props;\n    const ownerState = {\n      ...props,\n      component,\n      disableGutters,\n      fixed,\n      maxWidth\n    };\n\n    // @ts-ignore module augmentation fails if custom breakpoints are used\n    const classes = useUtilityClasses(ownerState, componentName);\n    return (\n      /*#__PURE__*/\n      // @ts-ignore theme is injected by the styled util\n      _jsx(ContainerRoot, {\n        as: component\n        // @ts-ignore module augmentation fails if custom breakpoints are used\n        ,\n        ownerState: ownerState,\n        className: clsx(classes.root, className),\n        ref: ref,\n        ...other\n      })\n    );\n  });\n  process.env.NODE_ENV !== \"production\" ? Container.propTypes /* remove-proptypes */ = {\n    children: PropTypes.node,\n    classes: PropTypes.object,\n    className: PropTypes.string,\n    component: PropTypes.elementType,\n    disableGutters: PropTypes.bool,\n    fixed: PropTypes.bool,\n    maxWidth: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['xs', 'sm', 'md', 'lg', 'xl', false]), PropTypes.string]),\n    sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n  } : void 0;\n  return Container;\n}","'use client';\n\nimport PropTypes from 'prop-types';\nimport { createContainer } from '@mui/system';\nimport capitalize from \"../utils/capitalize.js\";\nimport styled from \"../styles/styled.js\";\nimport useThemeProps from \"../styles/useThemeProps.js\";\nconst Container = createContainer({\n  createStyledComponent: styled('div', {\n    name: 'MuiContainer',\n    slot: 'Root',\n    overridesResolver: (props, styles) => {\n      const {\n        ownerState\n      } = props;\n      return [styles.root, styles[`maxWidth${capitalize(String(ownerState.maxWidth))}`], ownerState.fixed && styles.fixed, ownerState.disableGutters && styles.disableGutters];\n    }\n  }),\n  useThemeProps: inProps => useThemeProps({\n    props: inProps,\n    name: 'MuiContainer'\n  })\n});\nprocess.env.NODE_ENV !== \"production\" ? Container.propTypes /* remove-proptypes */ = {\n  // ┌────────────────────────────── Warning ──────────────────────────────┐\n  // │ These PropTypes are generated from the TypeScript type definitions. │\n  // │    To update them, edit the d.ts file and run `pnpm proptypes`.     │\n  // └─────────────────────────────────────────────────────────────────────┘\n  /**\n   * @ignore\n   */\n  children: PropTypes.node,\n  /**\n   * Override or extend the styles applied to the component.\n   */\n  classes: PropTypes.object,\n  /**\n   * The component used for the root node.\n   * Either a string to use a HTML element or a component.\n   */\n  component: PropTypes.elementType,\n  /**\n   * If `true`, the left and right padding is removed.\n   * @default false\n   */\n  disableGutters: PropTypes.bool,\n  /**\n   * Set the max-width to match the min-width of the current breakpoint.\n   * This is useful if you'd prefer to design for a fixed set of sizes\n   * instead of trying to accommodate a fully fluid viewport.\n   * It's fluid by default.\n   * @default false\n   */\n  fixed: PropTypes.bool,\n  /**\n   * Determine the max-width of the container.\n   * The container width grows with the size of the screen.\n   * Set to `false` to disable `maxWidth`.\n   * @default 'lg'\n   */\n  maxWidth: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['xs', 'sm', 'md', 'lg', 'xl', false]), PropTypes.string]),\n  /**\n   * The system prop that allows defining system overrides as well as additional CSS styles.\n   */\n  sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default Container;","import createStyled from \"../createStyled/index.js\";\nconst styled = createStyled();\nexport default styled;"],"names":["useStyles","makeStyles","dialogContent","width","textAreaFont","fontFamily","observer","model","handleClose","classes","error","setError","useState","sequenceChunks","setSequenceChunks","rev","setReverse","copied","setCopied","comp","setComplement","leftOffset","rightOffset","loading","Boolean","undefined","useEffect","controller","AbortController","selection","getSelectedRegions","length","Error","chunks","async","regions","signal","session","getSession","assemblyName","rpcManager","assemblyManager","assembly","get","adapterConfig","getConf","sessionId","call","fetchSequence","e","console","abort","sequence","map","chunk","chunkSeq","chunkRefName","chunkStart","chunkEnd","loc","toLocaleString","reverse","complement","header","seq","seqString","replaceAll","trimEnd","join","sequenceTooLarge","React","Dialog","maxWidth","open","onClose","setOffsets","title","DialogContent","Typography","color","Container","CircularProgress","style","marginLeft","size","disableShrink","TextField","variant","multiline","minRows","maxRows","disabled","className","fullWidth","value","InputProps","readOnly","input","FormGroup","FormControlLabel","control","Checkbox","onChange","event","target","checked","label","margin","DialogActions","Button","onClick","copy","setTimeout","startIcon","ContentCopyIcon","saveAs","Blob","type","GetAppIcon","d","circularRotateKeyframe","circularDashKeyframe","rotateAnimation","dashAnimation","CircularProgressRoot","name","slot","overridesResolver","props","styles","ownerState","root","theme","display","variants","transition","transitions","create","animation","Object","entries","palette","filter","vars","main","CircularProgressSVG","svg","CircularProgressCircle","circle","circleDisableShrink","stroke","strokeDasharray","strokeDashoffset","inProps","ref","thickness","other","slots","useUtilityClasses","circleStyle","rootStyle","rootProps","circumference","Math","PI","toFixed","round","transform","height","role","children","viewBox","cx","cy","r","fill","strokeWidth","getCircularProgressUtilityClass","defaultTheme","createTheme","defaultCreateStyledComponent","capitalize","String","fixed","disableGutters","useThemePropsDefault","useThemeProps","options","createStyledComponent","componentName","ContainerRoot","boxSizing","marginRight","paddingLeft","spacing","paddingRight","breakpoints","up","keys","values","reduce","acc","breakpointValueKey","breakpoint","unit","max","xs","component","classesProp","composeClasses","generateUtilityClass","as","clsx","createContainer"],"sourceRoot":""}
author	fubar
date	Sat, 05 Oct 2024 23:58:05 +0000
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