view x/static/js/937.4f610bdf.chunk.js.map @ 125:49f3d3878413 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566

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i >= 0; i -= 1) {\n      const r = resolutions[i]!\n      if (r <= 2 * bpPerPx) {\n        chosenResolution = r\n      }\n    }\n    return chosenResolution\n  }\n\n  getFeatures(region: Region, opts: HicOptions = {}) {\n    return ObservableCreate<ContactRecord>(async observer => {\n      const { refName: chr, start, end } = region\n      const { resolution, bpPerPx = 1, statusCallback = () => {} } = opts\n      const res = await this.getResolution(bpPerPx / (resolution || 1000), opts)\n      statusCallback('Downloading .hic data')\n\n      const records = await this.hic.getContactRecords(\n        'KR',\n        { start, chr, end },\n        { start, chr, end },\n        'BP',\n        res,\n      )\n      for (const record of records) {\n        observer.next(record)\n      }\n      statusCallback('')\n      observer.complete()\n    }, opts.signal) as any\n  }\n\n  // don't do feature stats estimation, similar to bigwigadapter\n  async getMultiRegionFeatureDensityStats(_regions: Region[]) {\n    return { featureDensity: 0 }\n  }\n\n  freeResources(/* { region } */): void {}\n}\n"],"names":["GenericFilehandleWrapper","constructor","filehandle","read","position","length","buffer","this","Buffer","alloc","slice","byteOffset","byteLength","openFilehandleWrapper","location","pluginManager","openLocation","HicAdapter","BaseFeatureDataAdapter","config","getSubAdapter","super","hicLocation","getConf","hic","HicStraw","file","setup","opts","statusCallback","result","getMetaData","getHeader","ret","chromosomes","rest","getRefNames","map","chr","name","getResolution","bpPerPx","resolutions","chosenResolution","at","i","r","getFeatures","region","ObservableCreate","async","refName","start","end","resolution","res","records","getContactRecords","record","observer","next","complete","signal","getMultiRegionFeatureDensityStats","_regions","featureDensity","freeResources"],"sourceRoot":""}