Mercurial > repos > fubar > jbrowse2
view x/static/js/9658.33669a59.chunk.js.map @ 125:49f3d3878413 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 5ea1f9c1eef1de76232e69aa6d34cda77d90d566
| author | fubar |
|---|---|
| date | Sat, 05 Oct 2024 23:58:05 +0000 |
| parents | |
| children |
line wrap: on
line source
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React from 'react'\nimport {\n assembleLocString,\n doesIntersect2,\n getSession,\n isSessionModelWithWidgets,\n Feature,\n getContainingTrack,\n getContainingView,\n} from '@jbrowse/core/util'\n\n// locals\nimport { getId, MAX_COLOR_RANGE } from '../drawSynteny'\nimport { LinearSyntenyDisplayModel } from '../model'\n\ninterface Pos {\n offsetPx: number\n}\n\nexport interface ClickCoord {\n clientX: number\n clientY: number\n feature: { f: Feature }\n}\n\ninterface FeatPos {\n p11: Pos\n p12: Pos\n p21: Pos\n p22: Pos\n f: Feature\n cigar: string[]\n}\n\nexport function drawMatchSimple({\n feature,\n ctx,\n offsets,\n cb,\n height,\n drawCurves,\n oobLimit,\n viewWidth,\n hideTiny,\n}: {\n feature: FeatPos\n ctx: CanvasRenderingContext2D\n offsets: number[]\n oobLimit: number\n viewWidth: number\n cb: (ctx: CanvasRenderingContext2D) => void\n height: number\n drawCurves?: boolean\n hideTiny?: boolean\n}) {\n const { p11, p12, p21, p22 } = feature\n\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n const minX = Math.min(x21, x22)\n const maxX = Math.max(x21, x22)\n\n if (!doesIntersect2(minX, maxX, -oobLimit, viewWidth + oobLimit)) {\n return\n }\n\n // drawing a line if the results are thin: drawing a line results in much\n // less pixellation than filling in a thin polygon\n if (l1 <= 1 && l2 <= 1) {\n // hideTiny can be used to avoid drawing mouseover for thin lines in this\n // case\n if (!hideTiny) {\n ctx.beginPath()\n ctx.moveTo(x11, y1)\n if (drawCurves) {\n ctx.bezierCurveTo(x11, mid, x21, mid, x21, y2)\n } else {\n ctx.lineTo(x21, y2)\n }\n ctx.stroke()\n }\n } else {\n draw(ctx, x11, x12, y1, x22, x21, y2, mid, drawCurves)\n cb(ctx)\n }\n}\n\nexport function draw(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n mid: number,\n drawCurves?: boolean,\n) {\n if (drawCurves) {\n drawBezierBox(ctx, x1, x2, y1, x3, x4, y2, mid)\n } else {\n drawBox(ctx, x1, x2, y1, x3, x4, y2)\n }\n}\n\nexport function drawBox(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n) {\n ctx.beginPath()\n ctx.moveTo(x1, y1)\n ctx.lineTo(x2, y1)\n ctx.lineTo(x3, y2)\n ctx.lineTo(x4, y2)\n ctx.closePath()\n ctx.fill()\n}\n\nexport function drawBezierBox(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n mid: number,\n) {\n const len1 = Math.abs(x1 - x2)\n const len2 = Math.abs(x1 - x2)\n\n // heuristic to not draw hourglass inversions with bezier curves when they\n // are thin and far apart because it results in areas that are not drawn well\n // demo https://codesandbox.io/s/fast-glitter-q3b1or?file=/src/index.js\n if (len1 < 5 && len2 < 5 && x2 < x1 && Math.abs(x1 - x3) > 100) {\n const tmp = x1\n x1 = x2\n x2 = tmp\n }\n ctx.beginPath()\n ctx.moveTo(x1, y1)\n ctx.lineTo(x2, y1)\n ctx.bezierCurveTo(x2, mid, x3, mid, x3, y2)\n ctx.lineTo(x4, y2)\n ctx.bezierCurveTo(x4, mid, x1, mid, x1, y1)\n ctx.closePath()\n ctx.fill()\n}\n\nexport function onSynClick(\n event: React.MouseEvent,\n model: LinearSyntenyDisplayModel,\n) {\n const view = getContainingView(model)\n const track = getContainingTrack(model)\n const ref1 = model.clickMapCanvas\n const ref2 = model.cigarClickMapCanvas\n if (!ref1 || !ref2) {\n return\n }\n const rect = ref1.getBoundingClientRect()\n const ctx1 = ref1.getContext('2d')\n const ctx2 = ref2.getContext('2d')\n if (!ctx1 || !ctx2) {\n return\n }\n const x = event.clientX - rect.left\n const y = event.clientY - rect.top\n const [r1, g1, b1] = ctx1.getImageData(x, y, 1, 1).data\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / model.numFeats)\n const id = getId(r1!, g1!, b1!, unitMultiplier)\n const feat = model.featPositions[id]\n if (feat) {\n const { f } = feat\n model.setClickId(f.id())\n const session = getSession(model)\n if (isSessionModelWithWidgets(session)) {\n session.showWidget(\n session.addWidget('BaseFeatureWidget', 'baseFeature', {\n view,\n track,\n featureData: f.toJSON(),\n }),\n )\n }\n }\n return feat\n}\n\nexport function onSynContextClick(\n event: React.MouseEvent,\n model: LinearSyntenyDisplayModel,\n setAnchorEl: (arg: ClickCoord) => void,\n) {\n event.preventDefault()\n const ref1 = model.clickMapCanvas\n const ref2 = model.cigarClickMapCanvas\n if (!ref1 || !ref2) {\n return\n }\n const rect = ref1.getBoundingClientRect()\n const ctx1 = ref1.getContext('2d')\n const ctx2 = ref2.getContext('2d')\n if (!ctx1 || !ctx2) {\n return\n }\n const { clientX, clientY } = event\n const x = clientX - rect.left\n const y = clientY - rect.top\n const [r1, g1, b1] = ctx1.getImageData(x, y, 1, 1).data\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / model.numFeats)\n const id = getId(r1!, g1!, b1!, unitMultiplier)\n const f = model.featPositions[id]\n if (f) {\n model.setClickId(f.f.id())\n setAnchorEl({ clientX, clientY, feature: f })\n }\n}\n\nexport function getTooltip(f: Feature, cigarOp?: string, cigarOpLen?: string) {\n // @ts-expect-error\n const f1 = f.toJSON() as {\n refName: string\n start: number\n end: number\n strand?: number\n assemblyName: string\n identity?: number\n name?: string\n mate: {\n start: number\n end: number\n refName: string\n name: string\n }\n }\n const f2 = f1.mate\n const l1 = f1.end - f1.start\n const l2 = f2.end - f2.start\n const identity = f1.identity\n const n1 = f1.name\n const n2 = f2.name\n return [\n `Loc1: ${assembleLocString(f1)}`,\n `Loc2: ${assembleLocString(f2)}`,\n `Inverted: ${f1.strand === -1}`,\n `Query len: ${l1.toLocaleString('en-US')}`,\n `Target len: ${l2.toLocaleString('en-US')}`,\n identity ? `Identity: ${identity.toPrecision(2)}` : '',\n cigarOp ? `CIGAR operator: ${cigarOp}${cigarOpLen}` : '',\n n1 ? `Name 1: ${n1}` : '',\n n2 ? `Name 1: ${n2}` : '',\n ]\n .filter(f => !!f)\n .join('<br/>')\n}\n","import { doesIntersect2, getContainingView } from '@jbrowse/core/util'\n// locals\nimport { LinearSyntenyViewModel } from '../LinearSyntenyView/model'\nimport { LinearSyntenyDisplayModel } from './model'\nimport { draw, drawMatchSimple } from './components/util'\n\nexport const MAX_COLOR_RANGE = 255 * 255 * 255 // max color range\n\nfunction makeColor(idx: number) {\n const r = Math.floor(idx / (255 * 255)) % 255\n const g = Math.floor(idx / 255) % 255\n const b = idx % 255\n return `rgb(${r},${g},${b})`\n}\n\nconst colorMap = {\n I: '#ff03',\n N: '#0a03',\n D: '#00f3',\n X: 'brown',\n M: '#f003',\n '=': '#f003',\n}\n\nconst lineLimit = 3\n\nconst oobLimit = 1600\n\nexport function getId(r: number, g: number, b: number, unitMultiplier: number) {\n return Math.floor((r * 255 * 255 + g * 255 + b - 1) / unitMultiplier)\n}\n\nexport function drawRef(\n model: LinearSyntenyDisplayModel,\n ctx1: CanvasRenderingContext2D,\n ctx3?: CanvasRenderingContext2D,\n) {\n const view = getContainingView(model) as LinearSyntenyViewModel\n const drawCurves = view.drawCurves\n const drawCIGAR = view.drawCIGAR\n const height = view.middleComparativeHeight\n const width = view.width\n const bpPerPxs = view.views.map(v => v.bpPerPx)\n\n if (ctx3) {\n ctx3.imageSmoothingEnabled = false\n }\n\n ctx1.beginPath()\n const featPos = model.featPositions\n const offsets = view.views.map(v => v.offsetPx)\n\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / featPos.length)\n\n // this loop is optimized to draw many thin lines with a single ctx.stroke\n // call, a separate loop below draws larger boxes\n ctx1.fillStyle = colorMap.M\n ctx1.strokeStyle = colorMap.M\n for (const { p11, p12, p21, p22 } of featPos) {\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n\n // drawing a line if the results are thin results in much less pixellation\n // than filling in a thin polygon\n if (\n l1 <= lineLimit &&\n l2 <= lineLimit &&\n x21 < width + oobLimit &&\n x21 > -oobLimit\n ) {\n ctx1.moveTo(x11, y1)\n if (drawCurves) {\n ctx1.bezierCurveTo(x11, mid, x21, mid, x21, y2)\n } else {\n ctx1.lineTo(x21, y2)\n }\n }\n }\n ctx1.stroke()\n\n // this loop only draws small lines as a polyline, the polyline calls\n // ctx.stroke once is much more efficient than calling stroke() many times\n ctx1.fillStyle = colorMap.M\n ctx1.strokeStyle = colorMap.M\n for (const { p11, p12, p21, p22, f, cigar } of featPos) {\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const minX = Math.min(x21, x22)\n const maxX = Math.max(x21, x22)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n\n if (\n !(l1 <= lineLimit && l2 <= lineLimit) &&\n doesIntersect2(minX, maxX, -oobLimit, view.width + oobLimit)\n ) {\n const s1 = f.get('strand')\n const k1 = s1 === -1 ? x12 : x11\n const k2 = s1 === -1 ? x11 : x12\n\n // rev1/rev2 flip the direction of the CIGAR drawing in horizontally flipped\n // modes. somewhat heuristically determined, but tested for\n const rev1 = k1 < k2 ? 1 : -1\n const rev2 = (x21 < x22 ? 1 : -1) * s1\n\n // cx1/cx2 are the current x positions on top and bottom rows\n let cx1 = k1\n let cx2 = s1 === -1 ? x22 : x21\n if (cigar.length && drawCIGAR) {\n // continuingFlag skips drawing commands on very small CIGAR features\n let continuingFlag = false\n\n // px1/px2 are the previous x positions on the top and bottom rows\n let px1 = 0\n let px2 = 0\n const unitMultiplier2 = Math.floor(MAX_COLOR_RANGE / cigar.length)\n for (let j = 0; j < cigar.length; j += 2) {\n const idx = j * unitMultiplier2 + 1\n\n const len = +cigar[j]!\n const op = cigar[j + 1] as keyof typeof colorMap\n\n if (!continuingFlag) {\n px1 = cx1\n px2 = cx2\n }\n\n const d1 = len / bpPerPxs[0]!\n const d2 = len / bpPerPxs[1]!\n\n if (op === 'M' || op === '=' || op === 'X') {\n cx1 += d1 * rev1\n cx2 += d2 * rev2\n } else if (op === 'D' || op === 'N') {\n cx1 += d1 * rev1\n }\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n else if (op === 'I') {\n cx2 += d2 * rev2\n }\n\n // check that we are even drawing in view here, e.g. that all\n // points are not all less than 0 or greater than width\n if (\n !(\n Math.max(px1, px2, cx1, cx2) < 0 ||\n Math.min(px1, px2, cx1, cx2) > width\n )\n ) {\n // if it is a small feature and not the last element of the\n // CIGAR (which could skip rendering it entire if we did turn\n // it on), then turn on continuing flag\n const isNotLast = j < cigar.length - 2\n if (\n Math.abs(cx1 - px1) <= 1 &&\n Math.abs(cx2 - px2) <= 1 &&\n isNotLast\n ) {\n continuingFlag = true\n } else {\n // allow rendering the dominant color when using continuing flag\n // if the last element of continuing was a large feature, else\n // just use match\n ctx1.fillStyle =\n colorMap[(continuingFlag && d1 > 1) || d2 > 1 ? op : 'M']\n continuingFlag = false\n\n draw(ctx1, px1, cx1, y1, cx2, px2, y2, mid, drawCurves)\n if (ctx3) {\n ctx3.fillStyle = makeColor(idx)\n draw(ctx3, px1, cx1, y1, cx2, px2, y2, mid, drawCurves)\n }\n }\n }\n }\n } else {\n draw(ctx1, x11, x12, y1, x22, x21, y2, mid, drawCurves)\n }\n }\n }\n\n // draw click map\n const ctx2 = model.clickMapCanvas?.getContext('2d')\n if (!ctx2) {\n return\n }\n ctx2.imageSmoothingEnabled = false\n ctx2.clearRect(0, 0, width, height)\n for (let i = 0; i < featPos.length; i++) {\n const feature = featPos[i]!\n const idx = i * unitMultiplier + 1\n ctx2.fillStyle = makeColor(idx)\n\n // too many click map false positives with colored stroked lines\n drawMatchSimple({\n cb: ctx => {\n ctx.fill()\n },\n feature,\n ctx: ctx2,\n drawCurves,\n offsets,\n oobLimit,\n viewWidth: view.width,\n hideTiny: true,\n height,\n })\n }\n return undefined\n}\n\nexport function drawMouseoverSynteny(model: LinearSyntenyDisplayModel) {\n const { clickId, mouseoverId } = model\n const highResolutionScaling = 1\n const view = getContainingView(model) as LinearSyntenyViewModel\n const drawCurves = view.drawCurves\n const height = view.middleComparativeHeight\n const width = view.width\n const ctx = model.mouseoverCanvas?.getContext('2d')\n const offsets = view.views.map(v => v.offsetPx)\n\n if (!ctx) {\n return\n }\n ctx.resetTransform()\n ctx.scale(highResolutionScaling, highResolutionScaling)\n ctx.clearRect(0, 0, width, height)\n const feature1 = model.featMap[mouseoverId || '']\n if (feature1) {\n ctx.fillStyle = 'rgb(0,0,0,0.1)'\n drawMatchSimple({\n cb: ctx => {\n ctx.fill()\n },\n feature: feature1,\n ctx,\n oobLimit,\n viewWidth: view.width,\n drawCurves,\n offsets,\n height,\n })\n }\n const feature2 = model.featMap[clickId || '']\n if (feature2) {\n ctx.strokeStyle = 'rgb(0, 0, 0, 0.9)'\n\n drawMatchSimple({\n cb: ctx => {\n ctx.stroke()\n },\n feature: feature2,\n ctx,\n oobLimit,\n viewWidth: view.width,\n drawCurves,\n offsets,\n height,\n })\n }\n}\n","import React from 'react'\nimport { useTheme } from '@mui/material'\nimport { stripAlpha } from '@jbrowse/core/util'\n\nexport default function SVGBackground({\n width,\n height,\n shift,\n}: {\n width: number\n height: number\n shift: number\n}) {\n const theme = useTheme()\n return (\n <rect\n width={width + shift * 2}\n height={height}\n fill={stripAlpha(theme.palette.background.default)}\n />\n )\n}\n","import React from 'react'\nimport { ThemeProvider } from '@mui/material'\nimport { getRoot } from 'mobx-state-tree'\nimport { when } from 'mobx'\nimport {\n getSession,\n getSerializedSvg,\n max,\n measureText,\n ReactRendering,\n renderToAbstractCanvas,\n renderToStaticMarkup,\n sum,\n getFillProps,\n} from '@jbrowse/core/util'\nimport { getTrackName } from '@jbrowse/core/util/tracks'\nimport { createJBrowseTheme } from '@jbrowse/core/ui'\nimport {\n SVGTracks,\n SVGRuler,\n totalHeight,\n} from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport SVGBackground from './SVGBackground'\nimport { ExportSvgOptions, LinearSyntenyViewModel } from '../model'\nimport { drawRef } from '../../LinearSyntenyDisplay/drawSynteny'\n\ntype LSV = LinearSyntenyViewModel\n\n// render LGV to SVG\nexport async function renderToSvg(model: LSV, opts: ExportSvgOptions) {\n await when(() => model.initialized)\n const {\n textHeight = 18,\n headerHeight = 30,\n rulerHeight = 30,\n fontSize = 13,\n trackLabels = 'offset',\n Wrapper = ({ children }) => children,\n themeName = 'default',\n } = opts\n const session = getSession(model)\n const themeVar = session.allThemes?.()[themeName]\n const { width, views, middleComparativeHeight: synH, tracks } = model\n const shift = 50\n const offset = headerHeight + rulerHeight\n\n const { createRootFn } = getRoot<any>(model)\n const heights = views.map(\n v => totalHeight(v.tracks, textHeight, trackLabels) + offset,\n )\n const totalHeightSvg = sum(heights) + synH + 100\n const displayResults = await Promise.all(\n views.map(\n async view =>\n ({\n view,\n data: await Promise.all(\n view.tracks.map(async track => {\n const d = track.displays[0]\n await when(() => (d.ready !== undefined ? d.ready : true))\n return {\n track,\n result: await d.renderSvg({ ...opts, theme: themeVar }),\n }\n }),\n ),\n }) as const,\n ),\n )\n\n const renderings = await Promise.all(\n tracks.map(async track => {\n const d = track.displays[0]\n await when(() => (d.ready !== undefined ? d.ready : true))\n const r = await renderToAbstractCanvas(\n width,\n synH,\n { exportSVG: opts },\n ctx => {\n drawRef(d, ctx)\n return undefined\n },\n )\n\n if ('imageData' in r) {\n throw new Error('found a canvas in svg export, probably a bug')\n }\n if ('canvasRecordedData' in r) {\n return {\n html: await getSerializedSvg({\n ...r,\n width,\n height: synH,\n }),\n }\n }\n return r\n }),\n )\n\n const trackLabelMaxLen =\n max(\n views.flatMap(view =>\n view.tracks.map(t =>\n measureText(getTrackName(t.configuration, session), fontSize),\n ),\n ),\n 0,\n ) + 40\n const trackLabelOffset = trackLabels === 'left' ? trackLabelMaxLen : 0\n const w = width + trackLabelOffset\n const theme = createJBrowseTheme(themeVar)\n\n // the xlink namespace is used for rendering <image> tag\n return renderToStaticMarkup(\n <ThemeProvider theme={theme}>\n <Wrapper>\n <svg\n width={width}\n height={totalHeightSvg}\n xmlns=\"http://www.w3.org/2000/svg\"\n xmlnsXlink=\"http://www.w3.org/1999/xlink\"\n viewBox={[0, 0, w + shift * 2, totalHeightSvg].toString()}\n >\n <SVGBackground width={w} height={totalHeightSvg} shift={shift} />\n <g transform={`translate(${shift} ${fontSize})`}>\n <g transform={`translate(${trackLabelOffset})`}>\n <text\n x={0}\n fontSize={fontSize}\n {...getFillProps(theme.palette.text.primary)}\n >\n {views[0]!.assemblyNames.join(', ')}\n </text>\n\n <SVGRuler model={displayResults[0]!.view} fontSize={fontSize} />\n </g>\n <SVGTracks\n textHeight={textHeight}\n trackLabels={trackLabels}\n fontSize={fontSize}\n model={displayResults[0]!.view}\n displayResults={displayResults[0]!.data}\n offset={offset}\n trackLabelOffset={trackLabelOffset}\n />\n </g>\n\n <defs>\n <clipPath id={'synclip'}>\n <rect x={0} y={0} width={width} height={synH} />\n </clipPath>\n </defs>\n <g\n transform={`translate(${shift + trackLabelOffset} ${\n fontSize + heights[0]!\n })`}\n clipPath={'url(#synclip)'}\n >\n {renderings.map((r, i) => (\n /* biome-ignore lint/suspicious/noArrayIndexKey: */\n <ReactRendering key={i} rendering={r} />\n ))}\n </g>\n <g transform={`translate(${shift} ${fontSize + heights[0]! + synH})`}>\n <g transform={`translate(${trackLabelOffset})`}>\n <text\n x={0}\n fontSize={fontSize}\n {...getFillProps(theme.palette.text.primary)}\n >\n {views[1]!.assemblyNames.join(', ')}\n </text>\n <SVGRuler model={displayResults[1]!.view} fontSize={fontSize} />\n </g>\n <SVGTracks\n textHeight={textHeight}\n trackLabels={trackLabels}\n fontSize={fontSize}\n model={displayResults[1]!.view}\n displayResults={displayResults[1]!.data}\n offset={offset}\n trackLabelOffset={trackLabelOffset}\n />\n </g>\n </svg>\n </Wrapper>\n </ThemeProvider>,\n createRootFn,\n )\n}\n"],"names":["drawMatchSimple","feature","ctx","offsets","cb","height","drawCurves","oobLimit","viewWidth","hideTiny","p11","p12","p21","p22","x11","offsetPx","x12","x21","x22","l1","Math","abs","l2","y2","mid","minX","min","maxX","max","doesIntersect2","beginPath","moveTo","bezierCurveTo","lineTo","stroke","draw","x1","x2","y1","x3","x4","len1","len2","tmp","closePath","fill","drawBezierBox","drawBox","onSynClick","event","model","view","getContainingView","track","getContainingTrack","ref1","clickMapCanvas","ref2","cigarClickMapCanvas","rect","getBoundingClientRect","ctx1","getContext","ctx2","x","clientX","left","y","clientY","top","r1","g1","b1","getImageData","data","unitMultiplier","floor","MAX_COLOR_RANGE","numFeats","id","getId","feat","featPositions","f","setClickId","session","getSession","isSessionModelWithWidgets","showWidget","addWidget","featureData","toJSON","onSynContextClick","setAnchorEl","preventDefault","getTooltip","cigarOp","cigarOpLen","f1","f2","mate","end","start","identity","n1","name","n2","assembleLocString","strand","toLocaleString","toPrecision","filter","join","makeColor","idx","colorMap","I","N","D","X","M","lineLimit","r","g","b","drawRef","ctx3","drawCIGAR","middleComparativeHeight","width","bpPerPxs","views","map","v","bpPerPx","imageSmoothingEnabled","featPos","length","fillStyle","strokeStyle","cigar","s1","get","k1","rev1","rev2","cx1","cx2","continuingFlag","px1","px2","unitMultiplier2","j","len","op","d1","d2","isNotLast","clearRect","i","drawMouseoverSynteny","clickId","mouseoverId","mouseoverCanvas","resetTransform","scale","feature1","featMap","feature2","SVGBackground","shift","theme","useTheme","React","stripAlpha","palette","background","default","async","renderToSvg","opts","when","initialized","textHeight","headerHeight","rulerHeight","fontSize","trackLabels","Wrapper","children","themeName","themeVar","allThemes","synH","tracks","offset","createRootFn","getRoot","heights","totalHeight","totalHeightSvg","sum","displayResults","Promise","all","d","displays","undefined","ready","result","renderSvg","renderings","renderToAbstractCanvas","exportSVG","Error","html","getSerializedSvg","trackLabelMaxLen","flatMap","t","measureText","getTrackName","configuration","trackLabelOffset","w","createJBrowseTheme","renderToStaticMarkup","ThemeProvider","xmlns","xmlnsXlink","viewBox","toString","transform","_extends","getFillProps","text","primary","assemblyNames","SVGRuler","SVGTracks","clipPath","ReactRendering","key","rendering"],"sourceRoot":""}