Mercurial > repos > fubar > jbrowse2
view test-data/blastxml/test.xml @ 8:9a168aa68f06 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 906bfc0007c5276f4bcd4be7b3c80a1840dccaec
author | fubar |
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date | Thu, 18 Jan 2024 06:41:25 +0000 |
parents | 2de9f585505b |
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<?xml version="1.0"?> <root> <metadata> <genomes> <genome>test-data/merlin.fa</genome> </genomes> <general> <defaultLocation></defaultLocation> <trackPadding>40</trackPadding> <shareLink>true</shareLink> <aboutDescription></aboutDescription> <show_tracklist>true</show_tracklist> <show_nav>true</show_nav> <show_overview>false</show_overview> <show_menu>true</show_menu> <hideGenomeOptions>false</hideGenomeOptions> </general> </metadata> <tracks> <track cat="Blah" format="blast"> <files> <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP"/> </files> <options> <style> <className>feature</className> <description></description> <label>Description</label> <height>400px</height> </style> <blast> <parent>test-data/blastxml/merlin.gff</parent> <protein>true</protein> <min_gap>10</min_gap> </blast> <scaling> <method>score</method> <algo>blast</algo> <scales> <type>__auto__</type> </scales> <scheme> <type>opacity</type> <color>__auto__</color> </scheme> </scaling> </options> </track> <track cat="Blah" format="blast"> <files> <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP, min_gap=3"/> </files> <options> <style> <className>feature</className> <description></description> <label>Description</label> <height>400px</height> </style> <blast> <parent>test-data/blastxml/merlin.gff</parent> <protein>true</protein> <min_gap>3</min_gap> </blast> <scaling> <method>score</method> <algo>blast</algo> <scales> <type>__auto__</type> </scales> <scheme> <type>opacity</type> <color>__auto__</color> </scheme> </scaling> </options> </track> <track cat="Blah" format="blast"> <files> <trackFile path="test-data/blastxml/blast-gene1.xml" ext="blastxml" label="Non protein match/matchpart"/> </files> <options> <style> <className>feature</className> <description></description> <label>Description</label> <height>400px</height> </style> <blast> <parent>test-data/blastxml/merlin.gff</parent> <min_gap>3</min_gap> </blast> <scaling> <method>ignore</method> <algo>linear</algo> <scheme> <type>opacity</type> <color>__auto__</color> </scheme> </scaling> </options> </track> <track cat="Blah" format="blast"> <files> <trackFile path="test-data/blastxml/blastn-gene1.xml" ext="blastxml" label="Non protein match/matchpart, no parent"/> </files> <options> <style> <className>feature</className> <description></description> <label>Description</label> <height>400px</height> </style> <blast> <min_gap>40</min_gap> </blast> <scaling> <method>score</method> <algo>blast</algo> <scales> <type>__auto__</type> </scales> <scheme> <type>opacity</type> <color>__auto__</color> </scheme> </scaling> </options> </track> </tracks> </root>