view configbedscore.sample @ 110:c017111e976a draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf-dirty

{
  "configuration": {
    "rpc": {
      "defaultDriver": "WebWorkerRpcDriver",
      "drivers": {
        "MainThreadRpcDriver": {},
        "WebWorkerRpcDriver": {}
      }
    },
    "logoPath": {
      "locationType": "UriLocation",
      "uri": ""
    }
  },
  "plugins": [ {"name": "BedScorePlugin", "umdLoc": { "uri": "bedscoreplugin.js" } } ],
  "assemblies": [
    {
      "name": "Merlin",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "Merlin-ReferenceSequenceTrack",
        "adapter": {
          "type": "BgzipFastaAdapter",
          "fastaLocation": {
            "locationType": "UriLocation",
            "uri": "Merlin.fa.gz"
          },
          "faiLocation": {
            "locationType": "UriLocation",
            "uri": "Merlin.fa.gz.fai"
          },
          "metadataLocation": {
            "locationType": "UriLocation",
            "uri": "/path/to/fa.metadata.yaml"
          },
          "gziLocation": {
            "locationType": "UriLocation",
            "uri": "Merlin.fa.gz.gzi"
          }
        },
        "displays": [
          {
            "type": "LinearReferenceSequenceDisplay",
            "displayId": "Merlin-ReferenceSequenceTrack-LinearReferenceSequenceDisplay"
          },
          {
            "type": "LinearGCContentDisplay",
            "displayId": "Merlin-ReferenceSequenceTrack-LinearGCContentDisplay"
          }
        ]
      }
    }
  ],
  "tracks": [
    {
      "type": "FeatureTrack",
      "trackId": "test-6.bed_2.bed",
      "name": "test-6.bed_2.bed",
      "assemblyNames": [
        "Merlin"
      ],
      "adapter": {
        "type": "BedTabixAdapter",
        "bedGzLocation": {
          "locationType": "UriLocation",
          "uri": "test-6.bed_2.bed.gz"
        },
        "index": {
          "location": {
            "locationType": "UriLocation",
            "uri": "test-6.bed_2.bed.gz.tbi"
          }
        },
        "columnNames": [
          "chr",
          "start",
          "end",
          "name",
          "score"
        ],
        "scoreColumn": "score"
      },
      "displays": [
        {
          "type": "LinearBasicDisplay",
          "displayId": "test-6.bed_2.bed-LinearBasicDisplay",
                    "renderer": {
                        "type": "SvgFeatureRenderer",
                        "color1": "jexl:customColor(feature)"
                        }
        },
        {
          "type": "LinearArcDisplay",
          "displayId": "test-6.bed_2.bed-LinearArcDisplay"
        }
      ]
    }
  ],
  "internetAccounts": [],
  "aggregateTextSearchAdapters": [],
  "connections": [],
  "defaultSession": {
    "drawerPosition": "right",
    "drawerWidth": 384,
    "widgets": {
      "GridBookmark": {
        "id": "GridBookmark",
        "type": "GridBookmarkWidget"
      },
      "hierarchicalTrackSelector": {
        "id": "hierarchicalTrackSelector",
        "type": "HierarchicalTrackSelectorWidget",
        "initialized": true,
        "collapsed": {},
        "view": "hzDuu9vlddMGFqOsaKwGq",
        "faceted": {
          "filterText": "",
          "showSparse": false,
          "showFilters": true,
          "showOptions": false,
          "panelWidth": 400
        }
      }
    },
    "activeWidgets": {
      "hierarchicalTrackSelector": "hierarchicalTrackSelector"
    },
    "minimized": false,
    "id": "E6V-suQtYj1PSAnmq6-jz",
    "name": "New session 6/29/2024, 2:40:30 PM",
    "margin": 0,
    "views": [
      {
        "id": "hzDuu9vlddMGFqOsaKwGq",
        "minimized": false,
        "type": "LinearGenomeView",
        "offsetPx": 0,
        "bpPerPx": 88.97425334706489,
        "displayedRegions": [
          {
            "refName": "Merlin",
            "start": 0,
            "end": 172788,
            "reversed": false,
            "assemblyName": "Merlin"
          }
        ],
        "tracks": [
          {
            "id": "sZaD_oFrn0S3MqLdbNEZI",
            "type": "FeatureTrack",
            "configuration": "test-6.bed_2.bed",
            "minimized": false,
            "displays": [
              {
                "id": "JmJklY1ylJY0_SB-IDkNm",
                "type": "LinearBasicDisplay",
                "configuration": "test-6.bed_2.bed-LinearBasicDisplay"
              }
            ]
          }
        ],
        "hideHeader": false,
        "hideHeaderOverview": false,
        "hideNoTracksActive": false,
        "trackSelectorType": "hierarchical",
        "showCenterLine": false,
        "showCytobandsSetting": true,
        "trackLabels": "",
        "showGridlines": true,
        "showBookmarkHighlights": true,
        "showBookmarkLabels": true
      }
    ],
    "sessionTracks": [],
    "sessionAssemblies": [],
    "temporaryAssemblies": [],
    "connectionInstances": [],
    "sessionConnections": [],
    "focusedViewId": "hzDuu9vlddMGFqOsaKwGq",
    "sessionPlugins": []
  }
}