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view test-data/merlin_tab.maf @ 87:de8fb46bc3ef draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit f09abc1f5ef8d261dff2d1b0063fff99a1b25f93-dirty
author fubar
date Wed, 10 Apr 2024 07:33:52 +0000
parents 0fae1d68347f
children
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##maf	version=1	scoring=lastz.v1.04.22
#	lastz.v1.04.22	--strand=both	--ambiguous=iupac	--traceback=160M	--format=maf	--action:target=multiple
#
#	hsp_threshold	=	3000
#	gapped_threshold	=	3000
#	x_drop	=	910
#	y_drop	=	9400
#	gap_open_penalty	=	400
#	gap_extend_penalty	=	30
#	A	C	G	T
#	A	91	-114	-31	-123
#	C	-114	100	-125	-31
#	G	-31	-125	100	-114
#	T	-123	-31	-114	91
a	score=5703
s	Merlin.Merlin	1320	60	+	172788	ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT
s	Merlin1.Merlin	0	60	+	60	ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT

a	score=5595
s	Merlin.Merlin	4020	60	+	172788	ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT
s	Merlin2.Merlin	0	60	+	60	ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT

a	score=5667
s	Merlin.Merlin	5220	60	+	172788	TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT
s	Merlin3.Merlin	0	60	+	60	TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT

a	score=5640
s	Merlin.Merlin	7740	60	+	172788	AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT
s	Merlin4.Merlin	0	60	+	60	AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT

a	score=5649
s	Merlin.Merlin	9720	60	+	172788	TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG
s	Merlin5.Merlin	0	60	+	60	TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG

a	score=5658
s	Merlin.Merlin	10380	60	+	172788	ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA
s	Merlin6.Merlin	0	60	+	60	ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA