# HG changeset patch
# User fubar
# Date 1706998075 0
# Node ID 172acf9c7a53d6255c40b4ba4fe16358b90229cc
# Parent  fb6cc7bc24df5d92e795be3c0ee2f974afb338eb
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 50ecae3ea703a1b04501cc44f0d1fa6d714a6cc9

diff -r fb6cc7bc24df -r 172acf9c7a53 jbrowse2.py
--- a/jbrowse2.py	Sat Feb 03 11:49:56 2024 +0000
+++ b/jbrowse2.py	Sat Feb 03 22:07:55 2024 +0000
@@ -459,9 +459,13 @@
                     genome_name  # first one for all tracks - other than paf
                 )
                 self.genome_firstcontig = None
-                fl = open(fapath, "r").readline().strip().split(">", 1)
+                fl = open(fapath, "r").readline().strip().split(">")
                 if len(fl) > 1:
-                    self.genome_firstcontig = fl[1].split().strip()
+                    fl = fl[1]
+                    if len(fl.split()) > 1:
+                        self.genome_firstcontig = fl.split()[0].strip()
+                    else:
+                        self.genome_firstcontig = fl
         if self.config_json.get("assemblies", None):
             self.config_json["assemblies"] += assemblies
         else: