# HG changeset patch
# User fubar
# Date 1713437849 0
# Node ID 6246925692cb0c79c91503e52a99c8aebc44dd3b
# Parent  51980e0dafd25381ec464d2692797e305f102959
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 0ff79bc5c2f228a5d56c84aac1b436d1cc62403d

diff -r 51980e0dafd2 -r 6246925692cb jbrowse2.xml
--- a/jbrowse2.xml	Wed Apr 17 22:31:52 2024 +0000
+++ b/jbrowse2.xml	Thu Apr 18 10:57:29 2024 +0000
@@ -609,6 +609,28 @@
                             </conditional>
                         </conditional>
                     </repeat>
+                    <repeat name="data_tracks">
+                        <conditional name="data_format">
+                            <param name="data_format_select" value="paf"/>
+                            <conditional name="useuri">
+                                <param name="insource" value="history"/>
+                                <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/arabgrapepeach.paf"/>
+                            </conditional>
+                        </conditional>
+
+                        <conditional name="pafsuseuri">
+                            <conditional name="useuri">
+                                <param name="insource" value="history"/>
+                                <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/arabidopsis.fa"/>
+                            </conditional>
+                        </conditional>
+                        <conditional name="pafsuseuri">
+                            <conditional name="useuri">
+                                <param name="insource" value="history"/>
+                                <param name="annotation" location="https://galaxy.genomicsvl-students.cloud.edu.au/jbrowse/merlin/Vvinifera1.fa"/>
+                            </conditional>
+                        </conditional>
+                    </repeat>
                 </repeat>
             </repeat>
             <repeat name="assemblies">
@@ -661,7 +683,10 @@
                     <has_archive_member path="merlin.blastxml_7.gz"/>
                     <has_archive_member path="dm3test.cool_9.hic"/>
                     <has_archive_member path="peach-grape-map.paf_10"/>
+                    <has_archive_member path="arabgrapepeach.paf_11"/>
                     <has_archive_member path="Merlin.fa.gz.fai"/>
+                    <has_archive_member path="dm3.fa.fa.gz.fai"/>
+                    <has_archive_member path="Ppersica1.fa.fa.gz.fai"/>
                     <has_archive_member path="config.json">
                         <has_json_property_with_text property="name" text="Merlin" />
                     </has_archive_member>
diff -r 51980e0dafd2 -r 6246925692cb test-data/jbrowse2_result02.zip
Binary file test-data/jbrowse2_result02.zip has changed