# HG changeset patch
# User fubar
# Date 1709259764 0
# Node ID e1a3d3221ed3b27c1145e84d55ec4013b94103cd
# Parent  bc57164eb270468704c7bc7c47ff098ba16acfac
planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 92901862ebe87a9c12f026608a34fbee347c4c78

diff -r bc57164eb270 -r e1a3d3221ed3 autogenJB2.xml
--- a/autogenJB2.xml	Fri Mar 01 01:03:09 2024 +0000
+++ b/autogenJB2.xml	Fri Mar 01 02:22:44 2024 +0000
@@ -66,15 +66,12 @@
 </tests>
     <help><![CDATA[
 
-JBrowse2-in-Galaxy
-==================
+Autogenerated JBrowse2
+======================
 
-JBrowse2-in-Galaxy offers a highly configurable, workflow-compatible
-alternative to JBrowse1-in-Galaxy and Trackster.
+Given a collection of datatypes suited for making JB2 tracks, this tool will create a working JBrowse2 configuration.
+A paf track requires a nested collection with the paf file and all the genomes used in creating it.
 
-Compared to JBrowse1-in-Galaxy, there is no support for alternative codons for unusual genomes,
-and detailed track styling is not yet implemented. Send code.
-JBrowse1 development has now ceased in favour of JBrowse2.
 
 Use and local viewing
 =====================
@@ -109,10 +106,6 @@
 
 The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC
 <https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer.
-It is maintained by https://github.com/fubar2 who you can help you
-with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic,
-and disturbed by the distinctly coercive approach to introducing new code,
-compared to the more usual method of providing a working PR.
 
 Options
 -------
diff -r bc57164eb270 -r e1a3d3221ed3 jbrowse2.xml
--- a/jbrowse2.xml	Fri Mar 01 01:03:09 2024 +0000
+++ b/jbrowse2.xml	Fri Mar 01 02:22:44 2024 +0000
@@ -762,13 +762,6 @@
 about how to run the command line tools to format your data, and which
 options need to be supplied and where.
 
-The JBrowse-in-Galaxy tool has been rejected by `a Galaxy IUC
-<https://github.com/galaxyproject/tools-iuc/issues>`__, reviewer.
-It is maintained by https://github.com/fubar2 who you can help you
-with missing features or bugs in the tool. For the record, he remains unconvinced by the reviewer's logic,
-and disturbed by the distinctly coercive approach to introducing new code,
-compared to the more usual method of providing a working PR.
-
 Options
 -------