# HG changeset patch
# User fubar
# Date 1705743202 0
# Node ID f5ce31c2f47d9564e5bade294887534a25984a40
# Parent  c60b1745629715693b9b873f74d47053f92fe99d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 4baeb144cafbb61ae0587cce731066129097c168

diff -r c60b17456297 -r f5ce31c2f47d jbrowse2.py
--- a/jbrowse2.py	Sat Jan 20 07:13:26 2024 +0000
+++ b/jbrowse2.py	Sat Jan 20 09:33:22 2024 +0000
@@ -1174,7 +1174,7 @@
 
         refName = None
         if data.get("defaultLocation", ""):
-            loc_match = re.search(r"^(\w+):(\d+)\.+(\d+)$", data["defaultLocation"])
+            loc_match = re.search(r"^(\w.+):(\d+)\.+(\d+)$", data["defaultLocation"])
             if loc_match:
                 refName = loc_match.group(1)
                 start = int(loc_match.group(2))
diff -r c60b17456297 -r f5ce31c2f47d jbrowse2.xml
--- a/jbrowse2.xml	Sat Jan 20 07:13:26 2024 +0000
+++ b/jbrowse2.xml	Sat Jan 20 09:33:22 2024 +0000
@@ -226,7 +226,7 @@
                     <param type="select" label="Track Type" name="data_format_select">
                         <option value="pileup">BAM Pileup track</option>
                         <option value="wiggle">BigWig track</option>
-                        <option value="blast">Blast XML track - converted to GFF</option>
+                        <!-- <option value="blast">Blast XML track - converted to GFF</option> -->
                         <option value="cram">CRAM</option>
                         <option value="gene_calls" selected="true">GFF/GFF3/BED feature track</option>
                         <option value="hic">HiC (compressed binary) track. Existing cool format must be converted to binary hic - hic_matrix will NOT work.</option>
@@ -234,6 +234,7 @@
                         <option value="synteny">Synteny track with PAF data</option>
                        <option value="vcf">VCF SNP annotation</option>
                     </param>
+                    <!--
                     <when value="blast">
                         <expand macro="input_conditional" label="BlastXML Track Data" format="blastxml" />
 
@@ -256,7 +257,7 @@
                             truevalue="true"
                             falsevalue="false" />
                         <expand macro="track_visibility" />
-                    </when>
+                    </when> -->
                     <when value="vcf">
                         <expand macro="input_conditional" label="SNP Track Data" format="vcf,vcf_bgzip" />
                         <expand macro="track_styling_vcf"/>