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Icon(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiIcon'\n });\n const {\n baseClassName = 'material-icons',\n className,\n color = 'inherit',\n component: Component = 'span',\n fontSize = 'medium',\n ...other\n } = props;\n const ownerState = {\n ...props,\n baseClassName,\n color,\n component: Component,\n fontSize\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(IconRoot, {\n as: Component,\n className: clsx(baseClassName,\n // Prevent the translation of the text content.\n // The font relies on the exact text content to render the icon.\n 'notranslate', classes.root, className),\n ownerState: ownerState,\n \"aria-hidden\": true,\n ref: ref,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? 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directionValues[breakpoints[index - 1]] : 'column';\n directionValues[breakpoint] = previousDirectionValue;\n }\n });\n }\n const styleFromPropValue = (propValue, breakpoint) => {\n if (ownerState.useFlexGap) {\n return {\n gap: getValue(transformer, propValue)\n };\n }\n return {\n // The useFlexGap={false} implement relies on each child to give up control of the margin.\n // We need to reset the margin to avoid double spacing.\n '& > :not(style):not(style)': {\n margin: 0\n },\n '& > :not(style) ~ :not(style)': {\n [`margin${getSideFromDirection(breakpoint ? directionValues[breakpoint] : ownerState.direction)}`]: getValue(transformer, propValue)\n }\n };\n };\n styles = deepmerge(styles, handleBreakpoints({\n theme\n }, spacingValues, styleFromPropValue));\n }\n styles = mergeBreakpointsInOrder(theme.breakpoints, styles);\n return styles;\n};\nexport default function createStack(options = {}) {\n const {\n // This will allow adding custom styled fn (for example for custom sx style 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children: divider ? joinChildren(children, divider) : children\n });\n });\n process.env.NODE_ENV !== \"production\" ? Stack.propTypes /* remove-proptypes */ = {\n children: PropTypes.node,\n direction: PropTypes.oneOfType([PropTypes.oneOf(['column-reverse', 'column', 'row-reverse', 'row']), PropTypes.arrayOf(PropTypes.oneOf(['column-reverse', 'column', 'row-reverse', 'row'])), PropTypes.object]),\n divider: PropTypes.node,\n spacing: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.number, PropTypes.string])), PropTypes.number, PropTypes.object, PropTypes.string]),\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n } : void 0;\n return Stack;\n}","'use client';\n\nimport PropTypes from 'prop-types';\nimport { createStack } from '@mui/system';\nimport styled from \"../styles/styled.js\";\nimport useThemeProps from \"../styles/useThemeProps.js\";\nconst Stack = createStack({\n createStyledComponent: styled('div', {\n name: 'MuiStack',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n }),\n useThemeProps: inProps => useThemeProps({\n props: inProps,\n name: 'MuiStack'\n })\n});\nprocess.env.NODE_ENV !== \"production\" ? 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We recommend checking https://caniuse.com/?search=flex%20gap before using this flag.\n *\n * To enable this flag globally, follow the [theme's default props](https://mui.com/material-ui/customization/theme-components/#default-props) configuration.\n * @default false\n */\n useFlexGap: PropTypes.bool\n} : void 0;\nexport default Stack;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getStackUtilityClass(slot) {\n return generateUtilityClass('MuiStack', slot);\n}\nconst stackClasses = generateUtilityClasses('MuiStack', ['root']);\nexport default stackClasses;","import createStyled from \"../createStyled/index.js\";\nconst styled = createStyled();\nexport default 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React from 'react'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { getSnapshot } from 'mobx-state-tree'\nimport {\n getFillProps,\n getStrokeProps,\n getTickDisplayStr,\n} from '@jbrowse/core/util'\nimport { bpToPx } from '@jbrowse/core/util/Base1DUtils'\nimport { useTheme } from '@mui/material'\n\n// locals\nimport { getBlockLabelKeysToHide } from './util'\nimport { DotplotViewModel } from '../model'\n\nconst useStyles = makeStyles()(() => ({\n vtext: {\n gridColumn: '1/2',\n gridRow: '1/2',\n pointerEvents: 'none',\n userSelect: 'none',\n },\n htext: {\n gridColumn: '2/2',\n gridRow: '2/2',\n pointerEvents: 'none',\n userSelect: 'none',\n },\n}))\nexport const HorizontalAxis = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { viewWidth, borderY } = model\n const { classes } = useStyles()\n return (\n \n )\n})\n\nexport const HorizontalAxisRaw = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) 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(\n \n ) : null,\n )}\n {ticks\n .filter(t => t[0].type === 'major')\n .map(([tick, x]) =>\n x > 10 && x < width ? (\n \n {getTickDisplayStr(tick.base + 1, bpPerPx)}\n \n ) : null,\n )}\n \n {hview.assemblyNames.join(',')}\n \n \n )\n})\nexport const VerticalAxis = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { borderX, viewHeight } = model\n const { classes } = useStyles()\n return (\n \n )\n})\n\nexport const VerticalAxisRaw = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { viewHeight, borderX, borderY, vview, vtextRotation, vticks } = model\n const { offsetPx, width, dynamicBlocks, bpPerPx } = vview\n const dblocks = dynamicBlocks.contentBlocks\n const hide = getBlockLabelKeysToHide(dblocks, viewHeight, offsetPx)\n const theme = useTheme()\n const vviewSnap = {\n ...getSnapshot(vview),\n width,\n staticBlocks: vview.staticBlocks,\n }\n const ticks = vticks\n .map(\n tick =>\n [\n tick,\n bpToPx({\n refName: tick.refName,\n coord: tick.base,\n self: vviewSnap,\n })?.offsetPx,\n ] as const,\n )\n .filter(f => f[1] !== undefined)\n .map(f => [f[0], f[1]! - offsetPx] as const)\n\n return (\n <>\n {dblocks\n .filter(region => !hide.has(region.key))\n .map(region => {\n const y = region.offsetPx\n const x = borderX\n const yoff = Math.floor(viewHeight - y + offsetPx)\n\n return (\n \n {region.refName}\n \n )\n })}\n {ticks.map(([tick, y]) =>\n y > 0 ? (\n \n ) : null,\n )}\n {ticks\n .filter(t => t[0].type === 'major')\n .map(([tick, y]) =>\n y > 10 && y < viewHeight ? (\n \n {getTickDisplayStr(tick.base + 1, bpPerPx)}\n \n ) : null,\n )}\n \n {vview.assemblyNames.join(',')}\n \n \n )\n})\n","import React from 'react'\nimport { observer } from 'mobx-react'\nimport { useTheme } from '@mui/material'\n\n// locals\nimport { DotplotViewModel } from '../model'\nimport { getFillProps, getStrokeProps } from '@jbrowse/core/util'\n\nexport const GridRaw = observer(function ({\n model,\n children,\n}: {\n model: DotplotViewModel\n children?: React.ReactNode\n}) {\n const { viewWidth, viewHeight, hview, vview } = model\n const hblocks = hview.dynamicBlocks.contentBlocks\n const vblocks = vview.dynamicBlocks.contentBlocks\n if (!hblocks.length || !vblocks.length) {\n return null\n }\n const htop = hview.displayedRegionsTotalPx - hview.offsetPx\n const vtop = vview.displayedRegionsTotalPx - vview.offsetPx\n const hbottom = hblocks[0]!.offsetPx - hview.offsetPx\n const vbottom = vblocks[0]!.offsetPx - vview.offsetPx\n const theme = useTheme()\n const stroke = theme.palette.divider\n\n // Uses math.max/min avoid making very large SVG rect offscreen element,\n // which can sometimes fail to draw\n const rx = Math.max(hbottom, 0)\n const ry = Math.max(viewHeight - vtop, 0)\n const w = Math.min(htop - hbottom, viewWidth)\n const h = Math.min(viewHeight - vbottom - ry, viewHeight)\n\n let lastx = Number.POSITIVE_INFINITY\n let lasty = Number.POSITIVE_INFINITY\n return (\n <>\n \n \n {hblocks.map(region => {\n const x = region.offsetPx - hview.offsetPx\n const render = Math.floor(x) !== Math.floor(lastx)\n if (render) {\n lastx = x\n }\n return render ? 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(\n \n ) : null\n })}\n \n \n \n {children}\n \n )\n})\n\nexport default function Grid({\n model,\n children,\n}: {\n model: DotplotViewModel\n children?: React.ReactNode\n}) {\n const { viewWidth, viewHeight } = model\n return (\n \n {children}\n \n )\n}\n","import React from 'react'\nimport { useTheme } from '@mui/material'\nimport { stripAlpha } from '@jbrowse/core/util'\n\nexport default function SVGBackground({\n width,\n height,\n}: {\n width: number\n height: number\n}) {\n const theme = useTheme()\n return (\n \n )\n}\n","import React from 'react'\nimport { when } from 'mobx'\nimport { getSession, renderToStaticMarkup } from '@jbrowse/core/util'\nimport { ThemeProvider } from '@mui/material'\nimport { createJBrowseTheme } from '@jbrowse/core/ui'\nimport { getRoot } from 'mobx-state-tree'\n\n// locals\nimport { DotplotViewModel, ExportSvgOptions } from '../model'\nimport { GridRaw } from '../components/Grid'\nimport { HorizontalAxisRaw, VerticalAxisRaw } from '../components/Axes'\nimport SVGBackground from './SVGBackground'\n\n// render LGV to SVG\nexport async function renderToSvg(\n model: DotplotViewModel,\n opts: ExportSvgOptions,\n) {\n await when(() => model.initialized)\n const { themeName = 'default', Wrapper = ({ children }) => children } = opts\n\n const { createRootFn } = getRoot(model)\n const session = getSession(model)\n const theme = session.allThemes?.()[themeName]\n const { width, borderX, viewWidth, viewHeight, tracks, height } = model\n const shift = 50\n const displayResults = await Promise.all(\n tracks.map(async track => {\n const display = track.displays[0]\n await when(() => (display.ready !== undefined ? display.ready : true))\n return { track, result: await display.renderSvg({ ...opts, theme }) }\n }),\n )\n const w = width + shift * 2\n\n // the xlink namespace is used for rendering tag\n return renderToStaticMarkup(\n \n \n \n \n \n \n \n \n \n \n \n \n \n {displayResults.map(({ result }, i) => (\n /* biome-ignore lint/suspicious/noArrayIndexKey: */\n {result}\n ))}\n \n \n \n \n \n \n \n ,\n createRootFn,\n )\n}\n"],"names":["useStyles","makeStyles","vtext","gridColumn","gridRow","pointerEvents","userSelect","htext","HorizontalAxis","observer","model","viewWidth","borderY","classes","React","width","height","className","HorizontalAxisRaw","borderX","hview","htextRotation","hticks","offsetPx","dynamicBlocks","bpPerPx","dblocks","contentBlocks","hide","getBlockLabelKeysToHide","theme","useTheme","hviewSnap","getSnapshot","staticBlocks","ticks","map","tick","bpToPx","refName","coord","base","self","filter","f","undefined","region","has","key","x","xoff","Math","floor","_extends","transform","JSON","stringify","y","fontSize","dominantBaseline","textAnchor","getFillProps","palette","text","primary","x1","x2","y1","y2","type","strokeWidth","t","getTickDisplayStr","assemblyNames","join","VerticalAxis","viewHeight","VerticalAxisRaw","vview","vtextRotation","vticks","vviewSnap","yoff","getStrokeProps","grey","GridRaw","children","hblocks","vblocks","length","htop","displayedRegionsTotalPx","vtop","hbottom","vbottom","stroke","divider","rx","max","ry","w","min","h","lastx","Number","POSITIVE_INFINITY","lasty","background","default","render","Grid","style","SVGBackground","fill","stripAlpha","async","renderToSvg","opts","when","initialized","themeName","Wrapper","createRootFn","getRoot","session","getSession","allThemes","tracks","displayResults","Promise","all","display","track","displays","ready","result","renderSvg","shift","renderToStaticMarkup","ThemeProvider","createJBrowseTheme","xmlns","xmlnsXlink","viewBox","toString","id","clipPath","i"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/1281.1d836fc4.chunk.js --- a/x/static/js/1281.1d836fc4.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[1281],{61281:(e,t,a)=>{a.r(t),a.d(t,{default:()=>k});var n=a(7552),r=a(29499),c=a(36715),s=a(1343),l=a(83867),o=a(33371),h=a(32808),i=a(58507),u=a(5401),d=a(49823),m=a(36422),g=a(75785),p=a(68446),A=a(99546);const b=(0,g.n9)()({dialogContent:{width:"40em"}}),k=(0,p.observer)((function({model:e,handleClose:t}){const{classes:a}=b(),[g,p]=(0,n.useState)(""),[k,C]=(0,n.useState)(!0),[E,S]=(0,n.useState)(!0),[w,y]=(0,n.useState)(!0);let v;try{new RegExp(g)}catch(e){v=e}return n.createElement(d.Dialog,{maxWidth:"xl",open:!0,onClose:t,title:"Sequence search"},n.createElement(r.A,{className:a.dialogContent},n.createElement(c.A,null,"Supply a sequence to search for. 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@module util */\n\n// Forks @gmod/gff-js and adapts it to parse and format GTF.\n\nconst fieldNames = [\n 'seq_name',\n 'source',\n 'featureType',\n 'start',\n 'end',\n 'score',\n 'strand',\n 'frame',\n 'attributes',\n]\n\n// TODO: check about enconding/escaping in gtf 9th column\n/**\n * Unescape a string/text value used in a GTF attribute.\n * Textual attributes should be surrounded by double quotes\n * source info:\n * https://mblab.wustl.edu/GTF22.html\n * https://en.wikipedia.org/wiki/Gene_transfer_format\n *\n * @param {String} s\n * @returns {String}\n */\nexport function unescape(s) {\n if (s === null) {\n return null\n }\n return String(s).replace(/%([0-9A-Fa-f]{2})/g, (_, seq) =>\n String.fromCharCode(parseInt(seq, 16)),\n )\n}\n\n/**\n * Escape a value for use in a GTF attribute value.\n *\n * @param {String} s\n * @returns {String}\n */\nfunction _escape(regex, s) {\n return String(s).replace(regex, ch => {\n let hex = ch.charCodeAt(0).toString(16).toUpperCase()\n\n // lol, apparently there's no native function for fixed-width hex output\n if (hex.length < 2) {\n hex = `0${hex}`\n }\n return `%${hex}`\n })\n}\n\nexport function escape(s) {\n // eslint-disable-next-line no-control-regex\n return _escape(/[\\n;\\r\\t=%&,\\x00-\\x1f\\x7f-\\xff]/g, s)\n}\n\n/**\n * Escape a value for use in a GTF column value.\n *\n * @param {String} s\n * @returns {String}\n */\nexport function escapeColumn(s) {\n // eslint-disable-next-line no-control-regex\n return _escape(/[\\n\\r\\t%\\x00-\\x1f\\x7f-\\xff]/g, s)\n}\n\n/**\n * Parse the 9th column (attributes) of a GTF feature line.\n *\n * @param {String} attrString\n * @returns {Object}\n */\nexport function parseAttributes(attrString) {\n if (!(attrString && attrString.length) || attrString === '.') {\n return {}\n }\n\n const attrs = {}\n\n attrString\n .replace(/\\r?\\n$/, '')\n .slice(0, -1) // need to remove the last semicolon in the attributes\n .split(';')\n .forEach(attribute => {\n if (!attribute) {\n return\n }\n const attr = attribute.trim().split(' ')\n if (!(attr[1] && attr[1].length)) {\n return\n }\n\n attr[0] = attr[0].trim()\n let arec = attrs[attr[0].trim()]\n if (!arec) {\n arec = []\n attrs[attr[0]] = arec\n }\n\n // arec.push(unescape(attr[1].trim()))\n arec.push(\n ...attr[1]\n .split(',')\n .map(s => s.trim())\n .map(unescape),\n )\n })\n return attrs\n}\n\n/**\n * Parse a GTF feature line.\n *\n * @param {String} line\n * returns the parsed line in an object\n */\nexport function parseFeature(line) {\n // assumed that there are no comments at the end of a line\n // split the line into columns and replace '.' with null in each column\n const f = line.split('\\t').map(a => (a === '.' ? null : a))\n\n // unescape only the seq_name, source, and feature columns\n f[0] = unescape(f[0])\n f[1] = unescape(f[1])\n f[2] = unescape(f[2])\n\n f[8] = parseAttributes(f[8])\n const parsed = {}\n for (let i = 0; i < fieldNames.length; i += 1) {\n parsed[fieldNames[i]] = f[i] === '.' ? null : f[i]\n }\n if (parsed.start !== null) {\n parsed.start = parseInt(parsed.start, 10)\n }\n if (parsed.end !== null) {\n parsed.end = parseInt(parsed.end, 10)\n }\n if (parsed.score !== null) {\n parsed.score = parseFloat(parsed.score, 10)\n }\n if (parsed.strand != null) {\n parsed.strand = parsed.strand\n }\n return parsed\n}\n\n/**\n * Parse a GTF directive/comment line.\n *\n * @param {String} line\n * @returns {Object} the information in the directive\n */\nexport function parseDirective(line) {\n const match = /^\\s*##\\s*(\\S+)\\s*(.*)/.exec(line)\n // const match = /^\\s*\\#\\#\\s*(\\S+)\\s*(.*)/.exec(line)\n if (!match) {\n return null\n }\n\n // let [, name, contents] = match\n const name = match[1]\n let contents = match[2]\n const parsed = { directive: name }\n if (contents.length) {\n contents = contents.replace(/\\r?\\n$/, '')\n parsed.value = contents\n }\n\n // do a little additional parsing for sequence-region and genome-build directives\n if (name === 'sequence-region') {\n const [seqId, contentStart, contentEnd] = contents.split(/\\s+/, 3)\n parsed.seq_id = seqId\n parsed.start = contentStart && contentStart.replace(/\\D/g, '')\n parsed.end = contentEnd && contentEnd.replace(/\\D/g, '')\n } else if (name === 'genome-build') {\n const [source, buildname] = contents.split(/\\s+/, 2)\n parsed.source = source\n parsed.buildname = buildname\n }\n\n return parsed\n}\n\n/**\n * Format an attributes object into a string suitable for the 9th column of GTF.\n *\n * @param {Object} attrs\n */\nexport function formatAttributes(attrs) {\n const attrOrder = []\n Object.keys(attrs).forEach(tag => {\n const val = attrs[tag]\n let valstring\n // eslint-disable-next-line no-prototype-builtins\n if (val.hasOwnProperty('toString')) {\n valstring = escape(val.toString())\n } else if (Array.isArray(val.values)) {\n valstring = val.values.map(escape).join(',')\n } else if (Array.isArray(val)) {\n valstring = val.map(escape).join(',')\n } else {\n valstring = escape(val)\n }\n attrOrder.push(`${escape(tag)} ${valstring}`)\n })\n return attrOrder.length ? attrOrder.join('; ').concat(';') : '.'\n}\n\nconst translateStrand = ['-', '.', '+']\n\nfunction _formatSingleFeature(f, seenFeature) {\n const attrString =\n f.attributes === null || f.attributes === undefined\n ? '.'\n : formatAttributes(f.attributes)\n\n const fields = []\n for (let i = 0; i < 8; i += 1) {\n const val = f[fieldNames[i]]\n // deserialize strand\n if (i === 6) {\n fields[i] =\n val === null || val === undefined\n ? '.'\n : translateStrand[val + 1] || val\n } else {\n fields[i] =\n val === null || val === undefined ? '.' : escapeColumn(String(val))\n }\n }\n fields[8] = attrString\n\n const formattedString = `${fields.join('\\t')}\\n`\n\n // if we have already output this exact feature, skip it\n if (seenFeature[formattedString]) {\n return ''\n }\n\n // eslint-disable-next-line no-param-reassign\n seenFeature[formattedString] = true\n return formattedString\n}\n\nfunction _formatFeature(feature, seenFeature) {\n if (Array.isArray(feature)) {\n return feature.map(f => _formatFeature(f, seenFeature)).join('')\n }\n\n const strings = [_formatSingleFeature(feature, seenFeature)]\n ;['child_features', 'derived_features'].forEach(multiSlot => {\n if (feature[multiSlot]) {\n strings.push(\n ...feature[multiSlot].map(f => _formatFeature(f, seenFeature)),\n )\n }\n })\n return strings.join('')\n}\n\n/**\n * Format a feature object or array of\n * feature objects into one or more lines of GTF.\n *\n * @param {Object|Array[Object]} featureOrFeatures\n */\nexport function formatFeature(featureOrFeatures) {\n const seen = {}\n return _formatFeature(featureOrFeatures, seen)\n}\n\n/**\n * Format a directive into a line of GTF.\n *\n * @param {Object} directive\n * @returns {String}\n */\nexport function formatDirective(directive) {\n let str = `##${directive.directive}`\n if (directive.value) {\n str += ` ${directive.value}`\n }\n str += '\\n'\n return str\n}\n\n/**\n * Format a comment into a GTF comment.\n * Yes I know this is just adding a # and a newline.\n *\n * @param {Object} comment\n * @returns {String}\n */\nexport function formatComment(comment) {\n return `# ${comment.comment}\\n`\n}\n\n/**\n * Format a sequence object as FASTA\n *\n * @param {Object} seq\n * @returns {String} formatted single FASTA sequence\n */\nexport function formatSequence(seq) {\n return `>${seq.id}${seq.description ? ` ${seq.description}` : ''}\\n${\n seq.sequence\n }\\n`\n}\n\n/**\n * Format a directive, comment, or feature,\n * or array of such items, into one or more lines of GTF.\n *\n * @param {Object|Array} itemOrItems\n */\nexport function formatItem(itemOrItems) {\n function formatSingleItem(item) {\n if (item[0] || item.attributes) {\n return formatFeature(item)\n }\n if (item.directive) {\n return formatDirective(item)\n }\n if (item.sequence) {\n return formatSequence(item)\n }\n if (item.comment) {\n return formatComment(item)\n }\n return '# (invalid item found during format)\\n'\n }\n\n if (Array.isArray(itemOrItems)) {\n return itemOrItems.map(item => formatSingleItem(item))\n }\n return formatSingleItem(itemOrItems)\n}\n","//@ts-nocheck\nimport * as GTF from './util'\n\nconst containerAttributes = {\n Parent: 'child_features',\n Derives_from: 'derived_features',\n}\n\nexport default class Parser {\n constructor(args) {\n // eslint-disable-next-line @typescript-eslint/no-empty-function\n const nullFunc = () => {}\n\n Object.assign(this, {\n featureCallback: args.featureCallback || nullFunc,\n endCallback: args.endCallback || nullFunc,\n commentCallback: args.commentCallback || nullFunc,\n errorCallback: args.errorCallback || nullFunc,\n directiveCallback: args.directiveCallback || nullFunc,\n sequenceCallback: args.sequenceCallback || nullFunc,\n\n // number of lines to buffer\n bufferSize: args.bufferSize === undefined ? 1000 : args.bufferSize,\n\n // features that we have to keep on hand for now because they\n // might be referenced by something else\n _underConstructionTopLevel: [],\n // index of the above by ID\n _underConstructionById: {},\n\n _completedReferences: {},\n\n // features that reference something we have not seen yet\n // structured as:\n // { 'some_id' : {\n // 'Parent' : [ orphans that have a Parent attr referencing it ],\n // 'Derives_from' : [ orphans that have a Derives_from attr referencing it ],\n // }\n // }\n _underConstructionOrphans: {},\n\n // if this is true, the parser ignores the\n // rest of the lines in the file.\n eof: false,\n\n lineNumber: 0,\n })\n }\n\n addLine(line) {\n if (this.eof) {\n // otherwise, if we are done, ignore this line\n return\n }\n\n this.lineNumber += 1\n\n if (/^\\s*[^#\\s>]/.test(line)) {\n // feature line, most common case\n this._bufferLine(line)\n return\n }\n\n const match = /^\\s*(#+)(.*)/.exec(line)\n if (match) {\n // directive or comment\n // eslint-disable-next-line prefer-const\n let [, hashsigns, contents] = match\n\n if (hashsigns.length === 3) {\n // sync directive, all forward-references are resolved.\n this._emitAllUnderConstructionFeatures()\n } else if (hashsigns.length === 2) {\n const directive = GTF.parseDirective(line)\n\n this._emitItem(directive)\n } else {\n contents = contents.replace(/\\s*/, '')\n this._emitItem({ comment: contents })\n }\n } else if (/^\\s*$/.test(line)) {\n // blank line, do nothing\n } else {\n // it's a parse error\n const errLine = line.replace(/\\r?\\n?$/g, '')\n throw new Error(`GTF parse error. Cannot parse '${errLine}'.`)\n }\n }\n\n _emitItem(i) {\n if (i[0]) {\n this.featureCallback(i)\n } else if (i.directive) {\n this.directiveCallback(i)\n } else if (i.comment) {\n this.commentCallback(i)\n }\n }\n\n finish() {\n this._emitAllUnderConstructionFeatures()\n this.endCallback()\n }\n\n _enforceBufferSizeLimit(additionalItemCount = 0) {\n const _unbufferItem = item => {\n if (\n item?.[0]?.attributes?.ID?.[0]\n ) {\n const ids = item[0].attributes.ID\n ids.forEach(id => {\n delete this._underConstructionById[id]\n delete this._completedReferences[id]\n })\n item.forEach(i => {\n if (i.child_features) {\n i.child_features.forEach(c => { _unbufferItem(c) })\n }\n if (i.derived_features) {\n i.derived_features.forEach(d => { _unbufferItem(d) })\n }\n })\n }\n }\n\n while (\n this._underConstructionTopLevel.length + additionalItemCount >\n this.bufferSize\n ) {\n const item = this._underConstructionTopLevel.shift()\n this._emitItem(item)\n _unbufferItem(item)\n }\n }\n\n /**\n * return all under-construction features, called when we know\n * there will be no additional data to attach to them\n * @private\n */\n _emitAllUnderConstructionFeatures() {\n this._underConstructionTopLevel.forEach(this._emitItem.bind(this))\n\n this._underConstructionTopLevel = []\n this._underConstructionById = {}\n this._completedReferences = {}\n\n // if we have any orphans hanging around still, this is a\n // problem. die with a parse error\n if (\n Object.values(this._underConstructionOrphans).filter(\n entry => Object.keys(entry).length,\n ).length\n ) {\n throw new Error(\n `some features reference other features that do not exist in the file (or in the same '###' scope). ${JSON.stringify(\n this._underConstructionOrphans,\n )}`,\n )\n }\n }\n\n // do the right thing with a newly-parsed feature line\n _bufferLine(line) {\n const featureLine = GTF.parseFeature(line)\n featureLine.child_features = []\n featureLine.derived_features = []\n // featureLine._lineNumber = this.lineNumber //< debugging aid\n\n const featureNumber = this.lineNumber // no such thing as unique ID in GTF. make one up.\n const isTranscript = featureLine.featureType === 'transcript' // trying to support the Cufflinks convention of adding a transcript line\n // NOTE: a feature is an arrayref of one or more feature lines.\n const ids = isTranscript\n ? featureLine.attributes.transcript_id || []\n : [featureNumber]\n const parents = isTranscript\n ? []\n : featureLine.attributes.transcript_id || []\n const derives = featureLine.attributes.Derives_from || []\n\n if (!ids.length && !parents.length && !derives.length) {\n // if it has no IDs and does not refer to anything, we can just\n // output it\n this._emitItem([featureLine])\n return\n }\n\n function createTranscript(feature) {\n const result = JSON.parse(JSON.stringify(feature))\n result.featureType = 'transcript'\n return GTF.formatFeature(result)\n }\n\n parents.forEach(parent => {\n const underConst = this._underConstructionById[parent]\n if (!underConst) {\n this._bufferLine(createTranscript(featureLine))\n }\n })\n\n let feature\n ids.forEach(id => {\n const existing = this._underConstructionById[id]\n if (existing) {\n existing.push(featureLine)\n feature = existing\n } else {\n // haven't seen it yet, so buffer it so we can attach\n // child features to it\n feature = [featureLine]\n\n this._enforceBufferSizeLimit(1)\n if (!parents.length && !derives.length) {\n this._underConstructionTopLevel.push(feature)\n }\n this._underConstructionById[id] = feature\n\n // see if we have anything buffered that refers to it\n this._resolveReferencesTo(feature, id)\n }\n })\n\n // try to resolve all its references\n this._resolveReferencesFrom(\n feature || [featureLine],\n { Parent: parents, Derives_from: derives },\n ids,\n )\n }\n\n _resolveReferencesTo(feature, id) {\n const references = this._underConstructionOrphans[id]\n if (!references) {\n return\n }\n\n Object.keys(references).forEach(attrname => {\n const pname = containerAttributes[attrname] || attrname.toLowerCase()\n feature.forEach(loc => {\n loc[pname].push(...references[attrname])\n delete references[attrname]\n })\n })\n }\n\n _parseError(message) {\n this.eof = true\n this.errorCallback(`${this.lineNumber}: ${message}`)\n }\n\n _resolveReferencesFrom(feature, references, ids) {\n // this is all a bit more awkward in javascript than it was in perl\n function postSet(obj, slot1, slot2) {\n let subObj = obj[slot1]\n if (!subObj) {\n subObj = {}\n \n obj[slot1] = subObj\n }\n const returnVal = subObj[slot2] || false\n subObj[slot2] = true\n return returnVal\n }\n\n function expandFeature(parentFeature, childFeature) {\n \n parentFeature[0].start = Math.min(\n parentFeature[0].start,\n childFeature[0].start,\n )\n \n parentFeature[0].end = Math.max(parentFeature[0].end, childFeature[0].end)\n }\n\n Object.entries(references).forEach(([attrname, toIds]) => {\n let pname\n toIds.forEach(toId => {\n const otherFeature = this._underConstructionById[toId]\n if (otherFeature) {\n expandFeature(otherFeature, feature)\n if (!pname) {\n pname = containerAttributes[attrname] || attrname.toLowerCase()\n }\n\n if (\n !ids.filter(id =>\n postSet(this._completedReferences, id, `${attrname},${toId}`),\n ).length\n ) {\n otherFeature.forEach(location => {\n location[pname].push(feature)\n })\n }\n } else {\n if (!this._underConstructionOrphans[toId]) {\n this._underConstructionOrphans[toId] = {}\n }\n if (!this._underConstructionOrphans[toId][attrname]) {\n this._underConstructionOrphans[toId][attrname] = []\n }\n this._underConstructionOrphans[toId][attrname].push(feature)\n }\n })\n })\n }\n}\n","export type Strand = '+' | '-' | '.' | '?'\nexport interface FeatureLoc {\n [key: string]: unknown\n start: number\n end: number\n strand: Strand\n seq_name: string\n child_features?: FeatureLoc[][]\n data: unknown\n derived_features: unknown\n attributes: Record\n}\n\nexport function featureData(data: FeatureLoc) {\n const f: Record = { ...data }\n ;(f.start as number) -= 1 // convert to interbase\n f.strand = { '+': 1, '-': -1, '.': 0, '?': undefined }[data.strand] // convert strand\n f.phase = Number(data.frame)\n f.refName = data.seq_name\n if (data.score === null) {\n f.score = undefined\n }\n if (data.frame === null) {\n f.score = undefined\n }\n const defaultFields = new Set([\n 'start',\n 'end',\n 'seq_name',\n 'score',\n 'featureType',\n 'source',\n 'frame',\n 'strand',\n ])\n for (const a of Object.keys(data.attributes)) {\n let b = a.toLowerCase()\n if (defaultFields.has(b)) {\n // add \"suffix\" to tag name if it already exists\n // reproduces behavior of NCList\n b += '2'\n }\n if (data.attributes[a]) {\n let attr = data.attributes[a] as string[] | string\n if (Array.isArray(attr) && attr.length === 1) {\n // gtf uses double quotes for text values in the attributes column,\n // remove them\n attr = attr[0]!.replaceAll(/^\"|\"$/g, '')\n }\n f[b] = attr\n }\n }\n f.refName = f.seq_name\n f.type = f.featureType\n\n // the SimpleFeature constructor takes care of recursively inflating subfeatures\n if (data.child_features && data.child_features.length > 0) {\n f.subfeatures = data.child_features.flatMap(childLocs =>\n childLocs.map(childLoc => featureData(childLoc)),\n )\n }\n\n f.child_features = undefined\n f.data = undefined\n f.derived_features = undefined\n f._linehash = undefined\n f.attributes = undefined\n f.seq_name = undefined\n f.featureType = undefined\n f.frame = undefined\n\n if (f.transcript_id) {\n f.name = f.transcript_id\n }\n return f\n}\n","import {\n BaseFeatureDataAdapter,\n BaseOptions,\n} from '@jbrowse/core/data_adapters/BaseAdapter'\nimport { NoAssemblyRegion } from '@jbrowse/core/util/types'\nimport { openLocation } from '@jbrowse/core/util/io'\nimport { ObservableCreate } from '@jbrowse/core/util/rxjs'\nimport IntervalTree from '@flatten-js/interval-tree'\nimport {\n SimpleFeature,\n Feature,\n updateStatus,\n isGzip,\n} from '@jbrowse/core/util'\nimport { unzip } from '@gmod/bgzf-filehandle'\nimport { parseStringSync } from 'gtf-nostream'\nimport type { Buffer } from 'buffer'\n\n// locals\nimport { FeatureLoc, featureData } from '../util'\n\nconst decoder =\n typeof TextDecoder !== 'undefined' ? new TextDecoder('utf8') : undefined\n\ntype StatusCallback = (arg: string) => void\n\nexport default class GtfAdapter extends BaseFeatureDataAdapter {\n calculatedIntervalTreeMap: Record = {}\n\n gtfFeatures?: Promise<{\n header: string\n intervalTreeMap: Record IntervalTree>\n }>\n\n private async loadDataP(opts?: BaseOptions) {\n const { statusCallback = () => {} } = opts || {}\n const buf = (await openLocation(\n this.getConf('gtfLocation'),\n this.pluginManager,\n ).readFile(opts)) as Buffer\n\n const buffer = isGzip(buf)\n ? await updateStatus('Unzipping', statusCallback, () => unzip(buf))\n : buf\n const headerLines = []\n const featureMap = {} as Record\n let blockStart = 0\n\n let i = 0\n while (blockStart < buffer.length) {\n const n = buffer.indexOf('\\n', blockStart)\n // could be a non-newline ended file, so slice to end of file if n===-1\n const b =\n n === -1 ? buffer.subarray(blockStart) : buffer.subarray(blockStart, n)\n const line = (decoder?.decode(b) || b.toString()).trim()\n if (line) {\n if (line.startsWith('#')) {\n headerLines.push(line)\n } else if (line.startsWith('>')) {\n break\n } else {\n const ret = line.indexOf('\\t')\n const refName = line.slice(0, ret)\n if (!featureMap[refName]) {\n featureMap[refName] = ''\n }\n featureMap[refName] += `${line}\\n`\n }\n }\n if (i++ % 10_000 === 0) {\n statusCallback(\n `Loading ${Math.floor(blockStart / 1_000_000).toLocaleString('en-US')}/${Math.floor(buffer.length / 1_000_000).toLocaleString('en-US')} MB`,\n )\n }\n\n blockStart = n + 1\n }\n\n const intervalTreeMap = Object.fromEntries(\n Object.entries(featureMap).map(([refName, lines]) => [\n refName,\n (sc?: (arg: string) => void) => {\n if (!this.calculatedIntervalTreeMap[refName]) {\n sc?.('Parsing GTF data')\n const intervalTree = new IntervalTree()\n ;(parseStringSync(lines) as FeatureLoc[][])\n .flat()\n .map(\n (f, i) =>\n new SimpleFeature({\n data: featureData(f),\n id: `${this.id}-${refName}-${i}`,\n }),\n )\n .forEach(obj =>\n intervalTree.insert([obj.get('start'), obj.get('end')], obj),\n )\n this.calculatedIntervalTreeMap[refName] = intervalTree\n }\n return this.calculatedIntervalTreeMap[refName]\n },\n ]),\n )\n\n return {\n header: headerLines.join('\\n'),\n intervalTreeMap,\n }\n }\n\n private async loadData(opts: BaseOptions = {}) {\n if (!this.gtfFeatures) {\n this.gtfFeatures = this.loadDataP(opts).catch((e: unknown) => {\n this.gtfFeatures = undefined\n throw e\n })\n }\n\n return this.gtfFeatures\n }\n\n public async getRefNames(opts: BaseOptions = {}) {\n const { intervalTreeMap } = await this.loadData(opts)\n return Object.keys(intervalTreeMap)\n }\n\n public async getHeader(opts: BaseOptions = {}) {\n const { header } = await this.loadData(opts)\n return header\n }\n\n public getFeatures(query: NoAssemblyRegion, opts: BaseOptions = {}) {\n return ObservableCreate(async observer => {\n try {\n const { start, end, refName } = query\n const { intervalTreeMap } = await this.loadData(opts)\n intervalTreeMap[refName]?.(opts.statusCallback)\n .search([start, end])\n .forEach(f => {\n observer.next(f)\n })\n observer.complete()\n } catch (e) {\n observer.error(e)\n }\n }, opts.signal)\n }\n public freeResources(/* { region } */) {}\n}\n","import Parser from './parse'\n\nexport function parseStringSync(str: string): unknown[] {\n if (!str) {\n return []\n }\n\n const items: unknown[] = []\n\n const parser = new Parser({\n // @ts-expect-error\n featureCallback: item => items.push(item),\n // @ts-expect-error\n errorCallback: err => {\n throw err\n },\n })\n\n for (const line of str.split(/\\r?\\n/)) {\n parser.addLine(line)\n }\n parser.finish()\n\n return 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generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getPaginationUtilityClass(slot) {\n return generateUtilityClass('MuiPagination', slot);\n}\nconst paginationClasses = generateUtilityClasses('MuiPagination', ['root', 'ul', 'outlined', 'text']);\nexport default paginationClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport integerPropType from '@mui/utils/integerPropType';\nimport { getPaginationUtilityClass } from \"./paginationClasses.js\";\nimport usePagination from \"../usePagination/index.js\";\nimport PaginationItem from \"../PaginationItem/index.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant\n } = ownerState;\n const slots = {\n root: ['root', variant],\n ul: ['ul']\n };\n return composeClasses(slots, getPaginationUtilityClass, classes);\n};\nconst PaginationRoot = styled('nav', {\n name: 'MuiPagination',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant]];\n }\n})({});\nconst PaginationUl = styled('ul', {\n name: 'MuiPagination',\n slot: 'Ul',\n overridesResolver: (props, styles) => styles.ul\n})({\n display: 'flex',\n flexWrap: 'wrap',\n alignItems: 'center',\n padding: 0,\n margin: 0,\n listStyle: 'none'\n});\nfunction defaultGetAriaLabel(type, page, selected) {\n if (type === 'page') {\n return `${selected ? '' : 'Go to '}page ${page}`;\n }\n return `Go to ${type} page`;\n}\nconst Pagination = /*#__PURE__*/React.forwardRef(function Pagination(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiPagination'\n });\n const {\n boundaryCount = 1,\n className,\n color = 'standard',\n count = 1,\n defaultPage = 1,\n disabled = false,\n getItemAriaLabel = defaultGetAriaLabel,\n hideNextButton = false,\n hidePrevButton = false,\n onChange,\n page,\n renderItem = item => /*#__PURE__*/_jsx(PaginationItem, {\n ...item\n }),\n shape = 'circular',\n showFirstButton = false,\n showLastButton = false,\n siblingCount = 1,\n size = 'medium',\n variant = 'text',\n ...other\n } = props;\n const {\n items\n } = usePagination({\n ...props,\n componentName: 'Pagination'\n });\n const ownerState = {\n ...props,\n boundaryCount,\n color,\n count,\n defaultPage,\n disabled,\n getItemAriaLabel,\n hideNextButton,\n hidePrevButton,\n renderItem,\n shape,\n showFirstButton,\n showLastButton,\n siblingCount,\n size,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(PaginationRoot, {\n \"aria-label\": \"pagination navigation\",\n className: clsx(classes.root, className),\n ownerState: ownerState,\n ref: ref,\n ...other,\n children: /*#__PURE__*/_jsx(PaginationUl, {\n className: classes.ul,\n ownerState: ownerState,\n children: items.map((item, index) => /*#__PURE__*/_jsx(\"li\", {\n children: renderItem({\n ...item,\n color,\n 'aria-label': getItemAriaLabel(item.type, item.page, item.selected),\n shape,\n size,\n variant\n })\n }, index))\n })\n });\n});\n\n// @default tags synced with default values from usePagination\n\nprocess.env.NODE_ENV !== \"production\" ? Pagination.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Number of always visible pages at the beginning and end.\n * @default 1\n */\n boundaryCount: integerPropType,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The active color.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'standard'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['primary', 'secondary', 'standard']), PropTypes.string]),\n /**\n * The total number of pages.\n * @default 1\n */\n count: integerPropType,\n /**\n * The page selected by default when the component is uncontrolled.\n * @default 1\n */\n defaultPage: integerPropType,\n /**\n * If `true`, the component is disabled.\n * @default false\n */\n disabled: PropTypes.bool,\n /**\n * Accepts a function which returns a string value that provides a user-friendly name for the current page.\n * This is important for screen reader users.\n *\n * For localization purposes, you can use the provided [translations](https://mui.com/material-ui/guides/localization/).\n * @param {string} type The link or button type to format ('page' | 'first' | 'last' | 'next' | 'previous' | 'start-ellipsis' | 'end-ellipsis'). Defaults to 'page'.\n * @param {number | null} page The page number to format.\n * @param {boolean} selected If true, the current page is selected.\n * @returns {string}\n */\n getItemAriaLabel: PropTypes.func,\n /**\n * If `true`, hide the next-page button.\n * @default false\n */\n hideNextButton: PropTypes.bool,\n /**\n * If `true`, hide the previous-page button.\n * @default false\n */\n hidePrevButton: PropTypes.bool,\n /**\n * Callback fired when the page is changed.\n *\n * @param {React.ChangeEvent} event The event source of the callback.\n * @param {number} page The page selected.\n */\n onChange: PropTypes.func,\n /**\n * The current page. Unlike `TablePagination`, which starts numbering from `0`, this pagination starts from `1`.\n */\n page: integerPropType,\n /**\n * Render the item.\n * @param {PaginationRenderItemParams} params The props to spread on a PaginationItem.\n * @returns {ReactNode}\n * @default (item) => \n */\n renderItem: PropTypes.func,\n /**\n * The shape of the pagination items.\n * @default 'circular'\n */\n shape: PropTypes.oneOf(['circular', 'rounded']),\n /**\n * If `true`, show the first-page button.\n * @default false\n */\n showFirstButton: PropTypes.bool,\n /**\n * If `true`, show the last-page button.\n * @default false\n */\n showLastButton: PropTypes.bool,\n /**\n * Number of always visible pages before and after the current page.\n * @default 1\n */\n siblingCount: integerPropType,\n /**\n * The size of the component.\n * @default 'medium'\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['small', 'medium', 'large']), PropTypes.string]),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'text'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['outlined', 'text']), PropTypes.string])\n} : void 0;\nexport default Pagination;","'use client';\n\nimport useControlled from '@mui/utils/useControlled';\nexport default function usePagination(props = {}) {\n // keep default values in sync with @default tags in Pagination.propTypes\n const {\n boundaryCount = 1,\n componentName = 'usePagination',\n count = 1,\n defaultPage = 1,\n disabled = false,\n hideNextButton = false,\n hidePrevButton = false,\n onChange: handleChange,\n page: pageProp,\n showFirstButton = false,\n showLastButton = false,\n siblingCount = 1,\n ...other\n } = props;\n const [page, setPageState] = useControlled({\n controlled: pageProp,\n default: defaultPage,\n name: componentName,\n state: 'page'\n });\n const handleClick = (event, value) => {\n if (!pageProp) {\n setPageState(value);\n }\n if (handleChange) {\n handleChange(event, value);\n }\n };\n\n // https://dev.to/namirsab/comment/2050\n const range = (start, end) => {\n const length = end - start + 1;\n return Array.from({\n length\n }, (_, i) => start + i);\n };\n const startPages = range(1, Math.min(boundaryCount, count));\n const endPages = range(Math.max(count - boundaryCount + 1, boundaryCount + 1), count);\n const siblingsStart = Math.max(Math.min(\n // Natural start\n page - siblingCount,\n // Lower boundary when page is high\n count - boundaryCount - siblingCount * 2 - 1),\n // Greater than startPages\n boundaryCount + 2);\n const siblingsEnd = Math.min(Math.max(\n // Natural end\n page + siblingCount,\n // Upper boundary when page is low\n boundaryCount + siblingCount * 2 + 2),\n // Less than endPages\n count - boundaryCount - 1);\n\n // Basic list of items to render\n // for example itemList = ['first', 'previous', 1, 'ellipsis', 4, 5, 6, 'ellipsis', 10, 'next', 'last']\n const itemList = [...(showFirstButton ? ['first'] : []), ...(hidePrevButton ? [] : ['previous']), ...startPages,\n // Start ellipsis\n // eslint-disable-next-line no-nested-ternary\n ...(siblingsStart > boundaryCount + 2 ? ['start-ellipsis'] : boundaryCount + 1 < count - boundaryCount ? [boundaryCount + 1] : []),\n // Sibling pages\n ...range(siblingsStart, siblingsEnd),\n // End ellipsis\n // eslint-disable-next-line no-nested-ternary\n ...(siblingsEnd < count - boundaryCount - 1 ? ['end-ellipsis'] : count - boundaryCount > boundaryCount ? [count - boundaryCount] : []), ...endPages, ...(hideNextButton ? [] : ['next']), ...(showLastButton ? ['last'] : [])];\n\n // Map the button type to its page number\n const buttonPage = type => {\n switch (type) {\n case 'first':\n return 1;\n case 'previous':\n return page - 1;\n case 'next':\n return page + 1;\n case 'last':\n return count;\n default:\n return null;\n }\n };\n\n // Convert the basic item list to PaginationItem props objects\n const items = itemList.map(item => {\n return typeof item === 'number' ? {\n onClick: event => {\n handleClick(event, item);\n },\n type: 'page',\n page: item,\n selected: item === page,\n disabled,\n 'aria-current': item === page ? 'true' : undefined\n } : {\n onClick: event => {\n handleClick(event, buttonPage(item));\n },\n type: item,\n page: buttonPage(item),\n selected: false,\n disabled: disabled || !item.includes('ellipsis') && (item === 'next' || item === 'last' ? page >= count : page <= 1)\n };\n });\n return {\n items,\n ...other\n };\n}","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M15.41 7.41L14 6l-6 6 6 6 1.41-1.41L10.83 12z\"\n}), 'NavigateBefore');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M10 6L8.59 7.41 13.17 12l-4.58 4.59L10 18l6-6z\"\n}), 'NavigateNext');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { alpha } from '@mui/system/colorManipulator';\nimport { useRtl } from '@mui/system/RtlProvider';\nimport paginationItemClasses, { getPaginationItemUtilityClass } from \"./paginationItemClasses.js\";\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport FirstPageIcon from \"../internal/svg-icons/FirstPage.js\";\nimport LastPageIcon from \"../internal/svg-icons/LastPage.js\";\nimport NavigateBeforeIcon from \"../internal/svg-icons/NavigateBefore.js\";\nimport NavigateNextIcon from \"../internal/svg-icons/NavigateNext.js\";\nimport useSlot from \"../utils/useSlot.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst overridesResolver = (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`size${capitalize(ownerState.size)}`], ownerState.variant === 'text' && styles[`text${capitalize(ownerState.color)}`], ownerState.variant === 'outlined' && styles[`outlined${capitalize(ownerState.color)}`], ownerState.shape === 'rounded' && styles.rounded, ownerState.type === 'page' && styles.page, (ownerState.type === 'start-ellipsis' || ownerState.type === 'end-ellipsis') && styles.ellipsis, (ownerState.type === 'previous' || ownerState.type === 'next') && styles.previousNext, (ownerState.type === 'first' || ownerState.type === 'last') && styles.firstLast];\n};\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n color,\n disabled,\n selected,\n size,\n shape,\n type,\n variant\n } = ownerState;\n const slots = {\n root: ['root', `size${capitalize(size)}`, variant, shape, color !== 'standard' && `color${capitalize(color)}`, color !== 'standard' && `${variant}${capitalize(color)}`, disabled && 'disabled', selected && 'selected', {\n page: 'page',\n first: 'firstLast',\n last: 'firstLast',\n 'start-ellipsis': 'ellipsis',\n 'end-ellipsis': 'ellipsis',\n previous: 'previousNext',\n next: 'previousNext'\n }[type]],\n icon: ['icon']\n };\n return composeClasses(slots, getPaginationItemUtilityClass, classes);\n};\nconst PaginationItemEllipsis = styled('div', {\n name: 'MuiPaginationItem',\n slot: 'Root',\n overridesResolver\n})(memoTheme(({\n theme\n}) => ({\n ...theme.typography.body2,\n borderRadius: 32 / 2,\n textAlign: 'center',\n boxSizing: 'border-box',\n minWidth: 32,\n padding: '0 6px',\n margin: '0 3px',\n color: (theme.vars || theme).palette.text.primary,\n height: 'auto',\n [`&.${paginationItemClasses.disabled}`]: {\n opacity: (theme.vars || theme).palette.action.disabledOpacity\n },\n variants: [{\n props: {\n size: 'small'\n },\n style: {\n minWidth: 26,\n borderRadius: 26 / 2,\n margin: '0 1px',\n padding: '0 4px'\n }\n }, {\n props: {\n size: 'large'\n },\n style: {\n minWidth: 40,\n borderRadius: 40 / 2,\n padding: '0 10px',\n fontSize: theme.typography.pxToRem(15)\n }\n }]\n})));\nconst PaginationItemPage = styled(ButtonBase, {\n name: 'MuiPaginationItem',\n slot: 'Root',\n overridesResolver\n})(memoTheme(({\n theme\n}) => ({\n ...theme.typography.body2,\n borderRadius: 32 / 2,\n textAlign: 'center',\n boxSizing: 'border-box',\n minWidth: 32,\n height: 32,\n padding: '0 6px',\n margin: '0 3px',\n color: (theme.vars || theme).palette.text.primary,\n [`&.${paginationItemClasses.focusVisible}`]: {\n backgroundColor: (theme.vars || theme).palette.action.focus\n },\n [`&.${paginationItemClasses.disabled}`]: {\n opacity: (theme.vars || theme).palette.action.disabledOpacity\n },\n transition: theme.transitions.create(['color', 'background-color'], {\n duration: theme.transitions.duration.short\n }),\n '&:hover': {\n backgroundColor: (theme.vars || theme).palette.action.hover,\n // Reset on touch devices, it doesn't add specificity\n '@media (hover: none)': {\n backgroundColor: 'transparent'\n }\n },\n [`&.${paginationItemClasses.selected}`]: {\n backgroundColor: (theme.vars || theme).palette.action.selected,\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette.action.selectedChannel} / calc(${theme.vars.palette.action.selectedOpacity} + ${theme.vars.palette.action.hoverOpacity}))` : alpha(theme.palette.action.selected, theme.palette.action.selectedOpacity + theme.palette.action.hoverOpacity),\n // Reset on touch devices, it doesn't add specificity\n '@media (hover: none)': {\n backgroundColor: (theme.vars || theme).palette.action.selected\n }\n },\n [`&.${paginationItemClasses.focusVisible}`]: {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette.action.selectedChannel} / calc(${theme.vars.palette.action.selectedOpacity} + ${theme.vars.palette.action.focusOpacity}))` : alpha(theme.palette.action.selected, theme.palette.action.selectedOpacity + theme.palette.action.focusOpacity)\n },\n [`&.${paginationItemClasses.disabled}`]: {\n opacity: 1,\n color: (theme.vars || theme).palette.action.disabled,\n backgroundColor: (theme.vars || theme).palette.action.selected\n }\n },\n variants: [{\n props: {\n size: 'small'\n },\n style: {\n minWidth: 26,\n height: 26,\n borderRadius: 26 / 2,\n margin: '0 1px',\n padding: '0 4px'\n }\n }, {\n props: {\n size: 'large'\n },\n style: {\n minWidth: 40,\n height: 40,\n borderRadius: 40 / 2,\n padding: '0 10px',\n fontSize: theme.typography.pxToRem(15)\n }\n }, {\n props: {\n shape: 'rounded'\n },\n style: {\n borderRadius: (theme.vars || theme).shape.borderRadius\n }\n }, {\n props: {\n variant: 'outlined'\n },\n style: {\n border: theme.vars ? `1px solid rgba(${theme.vars.palette.common.onBackgroundChannel} / 0.23)` : `1px solid ${theme.palette.mode === 'light' ? 'rgba(0, 0, 0, 0.23)' : 'rgba(255, 255, 255, 0.23)'}`,\n [`&.${paginationItemClasses.selected}`]: {\n [`&.${paginationItemClasses.disabled}`]: {\n borderColor: (theme.vars || theme).palette.action.disabledBackground,\n color: (theme.vars || theme).palette.action.disabled\n }\n }\n }\n }, {\n props: {\n variant: 'text'\n },\n style: {\n [`&.${paginationItemClasses.selected}`]: {\n [`&.${paginationItemClasses.disabled}`]: {\n color: (theme.vars || theme).palette.action.disabled\n }\n }\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter(['dark', 'contrastText'])).map(([color]) => ({\n props: {\n variant: 'text',\n color\n },\n style: {\n [`&.${paginationItemClasses.selected}`]: {\n color: (theme.vars || theme).palette[color].contrastText,\n backgroundColor: (theme.vars || theme).palette[color].main,\n '&:hover': {\n backgroundColor: (theme.vars || theme).palette[color].dark,\n // Reset on touch devices, it doesn't add specificity\n '@media (hover: none)': {\n backgroundColor: (theme.vars || theme).palette[color].main\n }\n },\n [`&.${paginationItemClasses.focusVisible}`]: {\n backgroundColor: (theme.vars || theme).palette[color].dark\n },\n [`&.${paginationItemClasses.disabled}`]: {\n color: (theme.vars || theme).palette.action.disabled\n }\n }\n }\n })), ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter(['light'])).map(([color]) => ({\n props: {\n variant: 'outlined',\n color\n },\n style: {\n [`&.${paginationItemClasses.selected}`]: {\n color: (theme.vars || theme).palette[color].main,\n border: `1px solid ${theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / 0.5)` : alpha(theme.palette[color].main, 0.5)}`,\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / ${theme.vars.palette.action.activatedOpacity})` : alpha(theme.palette[color].main, theme.palette.action.activatedOpacity),\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / calc(${theme.vars.palette.action.activatedOpacity} + ${theme.vars.palette.action.focusOpacity}))` : alpha(theme.palette[color].main, theme.palette.action.activatedOpacity + theme.palette.action.focusOpacity),\n // Reset on touch devices, it doesn't add specificity\n '@media (hover: none)': {\n backgroundColor: 'transparent'\n }\n },\n [`&.${paginationItemClasses.focusVisible}`]: {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / calc(${theme.vars.palette.action.activatedOpacity} + ${theme.vars.palette.action.focusOpacity}))` : alpha(theme.palette[color].main, theme.palette.action.activatedOpacity + theme.palette.action.focusOpacity)\n }\n }\n }\n }))]\n})));\nconst PaginationItemPageIcon = styled('div', {\n name: 'MuiPaginationItem',\n slot: 'Icon',\n overridesResolver: (props, styles) => styles.icon\n})(memoTheme(({\n theme\n}) => ({\n fontSize: theme.typography.pxToRem(20),\n margin: '0 -8px',\n variants: [{\n props: {\n size: 'small'\n },\n style: {\n fontSize: theme.typography.pxToRem(18)\n }\n }, {\n props: {\n size: 'large'\n },\n style: {\n fontSize: theme.typography.pxToRem(22)\n }\n }]\n})));\nconst PaginationItem = /*#__PURE__*/React.forwardRef(function PaginationItem(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiPaginationItem'\n });\n const {\n className,\n color = 'standard',\n component,\n components = {},\n disabled = false,\n page,\n selected = false,\n shape = 'circular',\n size = 'medium',\n slots = {},\n slotProps = {},\n type = 'page',\n variant = 'text',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n disabled,\n selected,\n shape,\n size,\n type,\n variant\n };\n const isRtl = useRtl();\n const classes = useUtilityClasses(ownerState);\n const externalForwardedProps = {\n slots: {\n previous: slots.previous ?? components.previous,\n next: slots.next ?? components.next,\n first: slots.first ?? components.first,\n last: slots.last ?? components.last\n },\n slotProps\n };\n const [PreviousSlot, previousSlotProps] = useSlot('previous', {\n elementType: NavigateBeforeIcon,\n externalForwardedProps,\n ownerState\n });\n const [NextSlot, nextSlotProps] = useSlot('next', {\n elementType: NavigateNextIcon,\n externalForwardedProps,\n ownerState\n });\n const [FirstSlot, firstSlotProps] = useSlot('first', {\n elementType: FirstPageIcon,\n externalForwardedProps,\n ownerState\n });\n const [LastSlot, lastSlotProps] = useSlot('last', {\n elementType: LastPageIcon,\n externalForwardedProps,\n ownerState\n });\n const rtlAwareType = isRtl ? {\n previous: 'next',\n next: 'previous',\n first: 'last',\n last: 'first'\n }[type] : type;\n const IconSlot = {\n previous: PreviousSlot,\n next: NextSlot,\n first: FirstSlot,\n last: LastSlot\n }[rtlAwareType];\n const iconSlotProps = {\n previous: previousSlotProps,\n next: nextSlotProps,\n first: firstSlotProps,\n last: lastSlotProps\n }[rtlAwareType];\n return type === 'start-ellipsis' || type === 'end-ellipsis' ? /*#__PURE__*/_jsx(PaginationItemEllipsis, {\n ref: ref,\n ownerState: ownerState,\n className: clsx(classes.root, className),\n children: \"\\u2026\"\n }) : /*#__PURE__*/_jsxs(PaginationItemPage, {\n ref: ref,\n ownerState: ownerState,\n component: component,\n disabled: disabled,\n className: clsx(classes.root, className),\n ...other,\n children: [type === 'page' && page, IconSlot ? /*#__PURE__*/_jsx(PaginationItemPageIcon, {\n ...iconSlotProps,\n className: classes.icon,\n as: IconSlot\n }) : null]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? PaginationItem.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * @ignore\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The active color.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'standard'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['primary', 'secondary', 'standard']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The components used for each slot inside.\n *\n * This prop is an alias for the `slots` prop.\n * It's recommended to use the `slots` prop instead.\n *\n * @default {}\n * @deprecated use the `slots` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n */\n components: PropTypes.shape({\n first: PropTypes.elementType,\n last: PropTypes.elementType,\n next: PropTypes.elementType,\n previous: PropTypes.elementType\n }),\n /**\n * If `true`, the component is disabled.\n * @default false\n */\n disabled: PropTypes.bool,\n /**\n * The current page number.\n */\n page: PropTypes.node,\n /**\n * If `true` the pagination item is selected.\n * @default false\n */\n selected: PropTypes.bool,\n /**\n * The shape of the pagination item.\n * @default 'circular'\n */\n shape: PropTypes.oneOf(['circular', 'rounded']),\n /**\n * The size of the component.\n * @default 'medium'\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['small', 'medium', 'large']), PropTypes.string]),\n /**\n * The props used for each slot inside.\n * @default {}\n */\n slotProps: PropTypes.shape({\n first: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n last: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n next: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n previous: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside.\n * @default {}\n */\n slots: PropTypes.shape({\n first: PropTypes.elementType,\n last: PropTypes.elementType,\n next: PropTypes.elementType,\n previous: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The type of pagination item.\n * @default 'page'\n */\n type: PropTypes.oneOf(['end-ellipsis', 'first', 'last', 'next', 'page', 'previous', 'start-ellipsis']),\n /**\n * The variant to use.\n * @default 'text'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['outlined', 'text']), PropTypes.string])\n} : void 0;\nexport default PaginationItem;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getPaginationItemUtilityClass(slot) {\n return generateUtilityClass('MuiPaginationItem', slot);\n}\nconst paginationItemClasses = generateUtilityClasses('MuiPaginationItem', ['root', 'page', 'sizeSmall', 'sizeLarge', 'text', 'textPrimary', 'textSecondary', 'outlined', 'outlinedPrimary', 'outlinedSecondary', 'rounded', 'ellipsis', 'firstLast', 'previousNext', 'focusVisible', 'disabled', 'selected', 'icon', 'colorPrimary', 'colorSecondary']);\nexport default paginationItemClasses;","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M18.41 16.59L13.82 12l4.59-4.59L17 6l-6 6 6 6zM6 6h2v12H6z\"\n}), 'FirstPage');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M5.59 7.41L10.18 12l-4.59 4.59L7 18l6-6-6-6zM16 6h2v12h-2z\"\n}), 'LastPage');"],"names":["getPaginationUtilityClass","slot","generateUtilityClass","generateUtilityClasses","PaginationRoot","styled","name","overridesResolver","props","styles","ownerState","root","variant","PaginationUl","ul","display","flexWrap","alignItems","padding","margin","listStyle","defaultGetAriaLabel","type","page","selected","inProps","ref","boundaryCount","className","color","count","defaultPage","disabled","getItemAriaLabel","hideNextButton","hidePrevButton","onChange","renderItem","item","PaginationItem","shape","showFirstButton","showLastButton","siblingCount","size","other","items","componentName","handleChange","pageProp","setPageState","useControlled","controlled","default","state","handleClick","event","value","range","start","end","length","Array","from","_","i","startPages","Math","min","endPages","max","siblingsStart","siblingsEnd","itemList","buttonPage","map","onClick","undefined","includes","usePagination","classes","slots","composeClasses","useUtilityClasses","clsx","children","index","createSvgIcon","d","capitalize","rounded","ellipsis","previousNext","firstLast","PaginationItemEllipsis","memoTheme","theme","typography","body2","borderRadius","textAlign","boxSizing","minWidth","vars","palette","text","primary","height","paginationItemClasses","opacity","action","disabledOpacity","variants","style","fontSize","pxToRem","PaginationItemPage","ButtonBase","focusVisible","backgroundColor","focus","transition","transitions","create","duration","short","hover","selectedChannel","selectedOpacity","hoverOpacity","focusOpacity","border","common","onBackgroundChannel","mode","borderColor","disabledBackground","Object","entries","filter","createSimplePaletteValueFilter","contrastText","main","dark","mainChannel","activatedOpacity","PaginationItemPageIcon","icon","component","components","slotProps","isRtl","first","last","previous","next","externalForwardedProps","PreviousSlot","previousSlotProps","useSlot","elementType","NavigateBefore","NextSlot","nextSlotProps","NavigateNext","FirstSlot","firstSlotProps","FirstPage","LastSlot","lastSlotProps","LastPage","rtlAwareType","IconSlot","iconSlotProps","as","getPaginationItemUtilityClass"],"sourceRoot":""} 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client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M16.59 8.59 12 13.17 7.41 8.59 6 10l6 6 6-6z\"\n}), 'ExpandMore');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getAccordionDetailsUtilityClass } from \"./accordionDetailsClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getAccordionDetailsUtilityClass, classes);\n};\nconst AccordionDetailsRoot = styled('div', {\n name: 'MuiAccordionDetails',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => ({\n padding: theme.spacing(1, 2, 2)\n})));\nconst AccordionDetails = /*#__PURE__*/React.forwardRef(function AccordionDetails(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAccordionDetails'\n });\n const {\n className,\n ...other\n } = props;\n const ownerState = props;\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(AccordionDetailsRoot, {\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? AccordionDetails.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default AccordionDetails;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAccordionDetailsUtilityClass(slot) {\n return generateUtilityClass('MuiAccordionDetails', slot);\n}\nconst accordionDetailsClasses = generateUtilityClasses('MuiAccordionDetails', ['root']);\nexport default accordionDetailsClasses;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAccordionSummaryUtilityClass(slot) {\n return generateUtilityClass('MuiAccordionSummary', slot);\n}\nconst accordionSummaryClasses = generateUtilityClasses('MuiAccordionSummary', ['root', 'expanded', 'focusVisible', 'disabled', 'gutters', 'contentGutters', 'content', 'expandIconWrapper']);\nexport default accordionSummaryClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport AccordionContext from \"../Accordion/AccordionContext.js\";\nimport accordionSummaryClasses, { getAccordionSummaryUtilityClass } from \"./accordionSummaryClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n expanded,\n disabled,\n disableGutters\n } = ownerState;\n const slots = {\n root: ['root', expanded && 'expanded', disabled && 'disabled', !disableGutters && 'gutters'],\n focusVisible: ['focusVisible'],\n content: ['content', expanded && 'expanded', !disableGutters && 'contentGutters'],\n expandIconWrapper: ['expandIconWrapper', expanded && 'expanded']\n };\n return composeClasses(slots, getAccordionSummaryUtilityClass, classes);\n};\nconst AccordionSummaryRoot = styled(ButtonBase, {\n name: 'MuiAccordionSummary',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => {\n const transition = {\n duration: theme.transitions.duration.shortest\n };\n return {\n display: 'flex',\n minHeight: 48,\n padding: theme.spacing(0, 2),\n transition: theme.transitions.create(['min-height', 'background-color'], transition),\n [`&.${accordionSummaryClasses.focusVisible}`]: {\n backgroundColor: (theme.vars || theme).palette.action.focus\n },\n [`&.${accordionSummaryClasses.disabled}`]: {\n opacity: (theme.vars || theme).palette.action.disabledOpacity\n },\n [`&:hover:not(.${accordionSummaryClasses.disabled})`]: {\n cursor: 'pointer'\n },\n variants: [{\n props: props => !props.disableGutters,\n style: {\n [`&.${accordionSummaryClasses.expanded}`]: {\n minHeight: 64\n }\n }\n }]\n };\n}));\nconst AccordionSummaryContent = styled('div', {\n name: 'MuiAccordionSummary',\n slot: 'Content',\n overridesResolver: (props, styles) => styles.content\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n flexGrow: 1,\n margin: '12px 0',\n variants: [{\n props: props => !props.disableGutters,\n style: {\n transition: theme.transitions.create(['margin'], {\n duration: theme.transitions.duration.shortest\n }),\n [`&.${accordionSummaryClasses.expanded}`]: {\n margin: '20px 0'\n }\n }\n }]\n})));\nconst AccordionSummaryExpandIconWrapper = styled('div', {\n name: 'MuiAccordionSummary',\n slot: 'ExpandIconWrapper',\n overridesResolver: (props, styles) => styles.expandIconWrapper\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n color: (theme.vars || theme).palette.action.active,\n transform: 'rotate(0deg)',\n transition: theme.transitions.create('transform', {\n duration: theme.transitions.duration.shortest\n }),\n [`&.${accordionSummaryClasses.expanded}`]: {\n transform: 'rotate(180deg)'\n }\n})));\nconst AccordionSummary = /*#__PURE__*/React.forwardRef(function AccordionSummary(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAccordionSummary'\n });\n const {\n children,\n className,\n expandIcon,\n focusVisibleClassName,\n onClick,\n ...other\n } = props;\n const {\n disabled = false,\n disableGutters,\n expanded,\n toggle\n } = React.useContext(AccordionContext);\n const handleChange = event => {\n if (toggle) {\n toggle(event);\n }\n if (onClick) {\n onClick(event);\n }\n };\n const ownerState = {\n ...props,\n expanded,\n disabled,\n disableGutters\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsxs(AccordionSummaryRoot, {\n focusRipple: false,\n disableRipple: true,\n disabled: disabled,\n component: \"div\",\n \"aria-expanded\": expanded,\n className: clsx(classes.root, className),\n focusVisibleClassName: clsx(classes.focusVisible, focusVisibleClassName),\n onClick: handleChange,\n ref: ref,\n ownerState: ownerState,\n ...other,\n children: [/*#__PURE__*/_jsx(AccordionSummaryContent, {\n className: classes.content,\n ownerState: ownerState,\n children: children\n }), expandIcon && /*#__PURE__*/_jsx(AccordionSummaryExpandIconWrapper, {\n className: classes.expandIconWrapper,\n ownerState: ownerState,\n children: expandIcon\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? AccordionSummary.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The icon to display as the expand indicator.\n */\n expandIcon: PropTypes.node,\n /**\n * This prop can help identify which element has keyboard focus.\n * The class name will be applied when the element gains the focus through keyboard interaction.\n * It's a polyfill for the [CSS :focus-visible selector](https://drafts.csswg.org/selectors-4/#the-focus-visible-pseudo).\n * The rationale for using this feature [is explained here](https://github.com/WICG/focus-visible/blob/HEAD/explainer.md).\n * A [polyfill can be used](https://github.com/WICG/focus-visible) to apply a `focus-visible` class to other components\n * if needed.\n */\n focusVisibleClassName: PropTypes.string,\n /**\n * @ignore\n */\n onClick: PropTypes.func,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default AccordionSummary;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Paper from \"../Paper/index.js\";\nimport { getCardUtilityClass } from \"./cardClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getCardUtilityClass, classes);\n};\nconst CardRoot = styled(Paper, {\n name: 'MuiCard',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n overflow: 'hidden'\n});\nconst Card = /*#__PURE__*/React.forwardRef(function Card(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCard'\n });\n const {\n className,\n raised = false,\n ...other\n } = props;\n const ownerState = {\n ...props,\n raised\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(CardRoot, {\n className: clsx(classes.root, className),\n elevation: raised ? 8 : undefined,\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Card.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * If `true`, the card will use raised styling.\n * @default false\n */\n raised: chainPropTypes(PropTypes.bool, props => {\n if (props.raised && props.variant === 'outlined') {\n return new Error('MUI: Combining `raised={true}` with `variant=\"outlined\"` has no effect.');\n }\n return null;\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default Card;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCardUtilityClass(slot) {\n return generateUtilityClass('MuiCard', slot);\n}\nconst cardClasses = generateUtilityClasses('MuiCard', ['root']);\nexport default cardClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getCardContentUtilityClass } from \"./cardContentClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root']\n };\n return composeClasses(slots, getCardContentUtilityClass, classes);\n};\nconst CardContentRoot = styled('div', {\n name: 'MuiCardContent',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n padding: 16,\n '&:last-child': {\n paddingBottom: 24\n }\n});\nconst CardContent = /*#__PURE__*/React.forwardRef(function CardContent(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCardContent'\n });\n const {\n className,\n component = 'div',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(CardContentRoot, {\n as: component,\n className: clsx(classes.root, className),\n ownerState: ownerState,\n ref: ref,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CardContent.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default CardContent;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCardContentUtilityClass(slot) {\n return generateUtilityClass('MuiCardContent', slot);\n}\nconst cardContentClasses = generateUtilityClasses('MuiCardContent', ['root']);\nexport default cardContentClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport Typography, { typographyClasses } from \"../Typography/index.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport cardHeaderClasses, { getCardHeaderUtilityClass } from \"./cardHeaderClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root'],\n avatar: ['avatar'],\n action: ['action'],\n content: ['content'],\n title: ['title'],\n subheader: ['subheader']\n };\n return composeClasses(slots, getCardHeaderUtilityClass, classes);\n};\nconst CardHeaderRoot = styled('div', {\n name: 'MuiCardHeader',\n slot: 'Root',\n overridesResolver: (props, styles) => ({\n [`& .${cardHeaderClasses.title}`]: styles.title,\n [`& .${cardHeaderClasses.subheader}`]: styles.subheader,\n ...styles.root\n })\n})({\n display: 'flex',\n alignItems: 'center',\n padding: 16\n});\nconst CardHeaderAvatar = styled('div', {\n name: 'MuiCardHeader',\n slot: 'Avatar',\n overridesResolver: (props, styles) => styles.avatar\n})({\n display: 'flex',\n flex: '0 0 auto',\n marginRight: 16\n});\nconst CardHeaderAction = styled('div', {\n name: 'MuiCardHeader',\n slot: 'Action',\n overridesResolver: (props, styles) => styles.action\n})({\n flex: '0 0 auto',\n alignSelf: 'flex-start',\n marginTop: -4,\n marginRight: -8,\n marginBottom: -4\n});\nconst CardHeaderContent = styled('div', {\n name: 'MuiCardHeader',\n slot: 'Content',\n overridesResolver: (props, styles) => styles.content\n})({\n flex: '1 1 auto',\n [`.${typographyClasses.root}:where(& .${cardHeaderClasses.title})`]: {\n display: 'block'\n },\n [`.${typographyClasses.root}:where(& .${cardHeaderClasses.subheader})`]: {\n display: 'block'\n }\n});\nconst CardHeader = /*#__PURE__*/React.forwardRef(function CardHeader(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCardHeader'\n });\n const {\n action,\n avatar,\n className,\n component = 'div',\n disableTypography = false,\n subheader: subheaderProp,\n subheaderTypographyProps,\n title: titleProp,\n titleTypographyProps,\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableTypography\n };\n const classes = useUtilityClasses(ownerState);\n let title = titleProp;\n if (title != null && title.type !== Typography && !disableTypography) {\n title = /*#__PURE__*/_jsx(Typography, {\n variant: avatar ? 'body2' : 'h5',\n className: classes.title,\n component: \"span\",\n ...titleTypographyProps,\n children: title\n });\n }\n let subheader = subheaderProp;\n if (subheader != null && subheader.type !== Typography && !disableTypography) {\n subheader = /*#__PURE__*/_jsx(Typography, {\n variant: avatar ? 'body2' : 'body1',\n className: classes.subheader,\n color: \"textSecondary\",\n component: \"span\",\n ...subheaderTypographyProps,\n children: subheader\n });\n }\n return /*#__PURE__*/_jsxs(CardHeaderRoot, {\n className: clsx(classes.root, className),\n as: component,\n ref: ref,\n ownerState: ownerState,\n ...other,\n children: [avatar && /*#__PURE__*/_jsx(CardHeaderAvatar, {\n className: classes.avatar,\n ownerState: ownerState,\n children: avatar\n }), /*#__PURE__*/_jsxs(CardHeaderContent, {\n className: classes.content,\n ownerState: ownerState,\n children: [title, subheader]\n }), action && /*#__PURE__*/_jsx(CardHeaderAction, {\n className: classes.action,\n ownerState: ownerState,\n children: action\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CardHeader.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The action to display in the card header.\n */\n action: PropTypes.node,\n /**\n * The Avatar element to display.\n */\n avatar: PropTypes.node,\n /**\n * @ignore\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, `subheader` and `title` won't be wrapped by a Typography component.\n * This can be useful to render an alternative Typography variant by wrapping\n * the `title` text, and optional `subheader` text\n * with the Typography component.\n * @default false\n */\n disableTypography: PropTypes.bool,\n /**\n * The content of the component.\n */\n subheader: PropTypes.node,\n /**\n * These props will be forwarded to the subheader\n * (as long as disableTypography is not `true`).\n */\n subheaderTypographyProps: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The content of the component.\n */\n title: PropTypes.node,\n /**\n * These props will be forwarded to the title\n * (as long as disableTypography is not `true`).\n */\n titleTypographyProps: PropTypes.object\n} : void 0;\nexport default CardHeader;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCardHeaderUtilityClass(slot) {\n return generateUtilityClass('MuiCardHeader', slot);\n}\nconst cardHeaderClasses = generateUtilityClasses('MuiCardHeader', ['root', 'avatar', 'action', 'content', 'title', 'subheader']);\nexport default cardHeaderClasses;"],"names":["d","AccordionDetailsRoot","name","slot","overridesResolver","props","styles","root","theme","padding","spacing","inProps","ref","className","other","ownerState","classes","useUtilityClasses","getAccordionDetailsUtilityClass","getAccordionSummaryUtilityClass","generateUtilityClass","generateUtilityClasses","AccordionSummaryRoot","styled","ButtonBase","memoTheme","transition","duration","transitions","shortest","display","minHeight","create","focusVisible","backgroundColor","vars","palette","action","focus","disabled","opacity","disabledOpacity","cursor","variants","disableGutters","style","expanded","AccordionSummaryContent","content","flexGrow","margin","AccordionSummaryExpandIconWrapper","expandIconWrapper","color","active","transform","children","expandIcon","focusVisibleClassName","onClick","toggle","AccordionContext","A","slots","composeClasses","focusRipple","disableRipple","component","clsx","event","CardRoot","overflow","raised","elevation","undefined","getCardUtilityClass","CardContentRoot","paddingBottom","as","getCardContentUtilityClass","CardHeaderRoot","title","subheader","alignItems","CardHeaderAvatar","avatar","flex","marginRight","CardHeaderAction","alignSelf","marginTop","marginBottom","CardHeaderContent","disableTypography","subheaderProp","subheaderTypographyProps","titleProp","titleTypographyProps","type","variant","getCardHeaderUtilityClass"],"sourceRoot":""} 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React from 'react'\nimport { makeStyles } from 'tss-react/mui'\n\nconst useStyles = makeStyles()(theme => ({\n table: {\n border: '1px solid #888',\n margin: theme.spacing(4),\n '& td': {\n padding: theme.spacing(1),\n },\n },\n}))\n\nexport default function ModificationTable({\n modifications,\n}: {\n modifications: [string, string | undefined][]\n}) {\n const { classes } = useStyles()\n return (\n \n \n {modifications.map(([key, value]) => (\n \n \n \n \n \n ))}\n \n

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css`\n animation: ${circularRotateKeyframe} 1.4s linear infinite;\n ` : null;\nconst dashAnimation = typeof circularDashKeyframe !== 'string' ? css`\n animation: ${circularDashKeyframe} 1.4s ease-in-out infinite;\n ` : null;\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant,\n color,\n disableShrink\n } = ownerState;\n const slots = {\n root: ['root', variant, `color${capitalize(color)}`],\n svg: ['svg'],\n circle: ['circle', `circle${capitalize(variant)}`, disableShrink && 'circleDisableShrink']\n };\n return composeClasses(slots, getCircularProgressUtilityClass, classes);\n};\nconst CircularProgressRoot = styled('span', {\n name: 'MuiCircularProgress',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'inline-block',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('transform')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: rotateAnimation || {\n animation: `${circularRotateKeyframe} 1.4s linear infinite`\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color\n },\n style: {\n color: (theme.vars || theme).palette[color].main\n }\n }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n name: 'MuiCircularProgress',\n slot: 'Svg',\n overridesResolver: (props, styles) => styles.svg\n})({\n display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n name: 'MuiCircularProgress',\n slot: 'Circle',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n }\n})(memoTheme(({\n theme\n}) => ({\n stroke: 'currentColor',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('stroke-dashoffset')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: {\n // Some default value that looks fine waiting for the animation to kicks in.\n strokeDasharray: '80px, 200px',\n strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n style: dashAnimation || {\n // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n }\n }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCircularProgress'\n });\n const {\n className,\n color = 'primary',\n disableShrink = false,\n size = 40,\n style,\n thickness = 3.6,\n value = 0,\n variant = 'indeterminate',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n disableShrink,\n size,\n thickness,\n value,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n const circleStyle = {};\n const rootStyle = {};\n const rootProps = {};\n if (variant === 'determinate') {\n const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n circleStyle.strokeDasharray = circumference.toFixed(3);\n rootProps['aria-valuenow'] = Math.round(value);\n circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n rootStyle.transform = 'rotate(-90deg)';\n }\n return /*#__PURE__*/_jsx(CircularProgressRoot, {\n className: clsx(classes.root, className),\n style: {\n width: size,\n height: size,\n ...rootStyle,\n ...style\n },\n ownerState: ownerState,\n ref: ref,\n role: \"progressbar\",\n ...rootProps,\n ...other,\n children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n className: classes.svg,\n ownerState: ownerState,\n viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n className: classes.circle,\n style: circleStyle,\n ownerState: ownerState,\n cx: SIZE,\n cy: SIZE,\n r: (SIZE - thickness) / 2,\n fill: \"none\",\n strokeWidth: thickness\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the shrink animation is disabled.\n * This only works if variant is `indeterminate`.\n * @default false\n */\n disableShrink: chainPropTypes(PropTypes.bool, props => {\n if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n }\n return null;\n }),\n /**\n * The size of the component.\n * If using a number, the pixel unit is assumed.\n * If using a string, you need to provide the CSS unit, for example '3rem'.\n * @default 40\n */\n size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The thickness of the circle.\n * @default 3.6\n */\n thickness: PropTypes.number,\n /**\n * The value of the progress indicator for the determinate variant.\n * Value between 0 and 100.\n * @default 0\n */\n value: PropTypes.number,\n /**\n * The variant to use.\n * Use indeterminate when there is no progress value.\n * @default 'indeterminate'\n */\n variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default 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n=e.itemCount,o=1;r {\n const {\n color,\n anchorOrigin,\n invisible,\n overlap,\n variant,\n classes = {}\n } = ownerState;\n const slots = {\n root: ['root'],\n badge: ['badge', variant, invisible && 'invisible', `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}`, `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}${capitalize(overlap)}`, `overlap${capitalize(overlap)}`, color !== 'default' && `color${capitalize(color)}`]\n };\n return composeClasses(slots, getBadgeUtilityClass, classes);\n};\nconst BadgeRoot = styled('span', {\n name: 'MuiBadge',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n position: 'relative',\n display: 'inline-flex',\n // For correct alignment with the text.\n verticalAlign: 'middle',\n flexShrink: 0\n});\nconst BadgeBadge = styled('span', {\n name: 'MuiBadge',\n slot: 'Badge',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.badge, styles[ownerState.variant], styles[`anchorOrigin${capitalize(ownerState.anchorOrigin.vertical)}${capitalize(ownerState.anchorOrigin.horizontal)}${capitalize(ownerState.overlap)}`], ownerState.color !== 'default' && styles[`color${capitalize(ownerState.color)}`], ownerState.invisible && styles.invisible];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n flexDirection: 'row',\n flexWrap: 'wrap',\n justifyContent: 'center',\n alignContent: 'center',\n alignItems: 'center',\n position: 'absolute',\n boxSizing: 'border-box',\n fontFamily: theme.typography.fontFamily,\n fontWeight: theme.typography.fontWeightMedium,\n fontSize: theme.typography.pxToRem(12),\n minWidth: RADIUS_STANDARD * 2,\n lineHeight: 1,\n padding: '0 6px',\n height: RADIUS_STANDARD * 2,\n borderRadius: RADIUS_STANDARD,\n zIndex: 1,\n // Render the badge on top of potential ripples.\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeInOut,\n duration: theme.transitions.duration.enteringScreen\n }),\n variants: [...Object.entries(theme.palette).filter(createSimplePaletteValueFilter(['contrastText'])).map(([color]) => ({\n props: {\n color\n },\n style: {\n backgroundColor: (theme.vars || theme).palette[color].main,\n color: (theme.vars || theme).palette[color].contrastText\n }\n })), {\n props: {\n variant: 'dot'\n },\n style: {\n borderRadius: RADIUS_DOT,\n height: RADIUS_DOT * 2,\n minWidth: RADIUS_DOT * 2,\n padding: 0\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'rectangular',\n style: {\n top: 0,\n right: 0,\n transform: 'scale(1) translate(50%, -50%)',\n transformOrigin: '100% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'rectangular',\n style: {\n bottom: 0,\n right: 0,\n transform: 'scale(1) translate(50%, 50%)',\n transformOrigin: '100% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n top: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, -50%)',\n transformOrigin: '0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n bottom: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'circular',\n style: {\n top: '14%',\n right: '14%',\n transform: 'scale(1) translate(50%, -50%)',\n transformOrigin: '100% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'circular',\n style: {\n bottom: '14%',\n right: '14%',\n transform: 'scale(1) translate(50%, 50%)',\n transformOrigin: '100% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'circular',\n style: {\n top: '14%',\n left: '14%',\n transform: 'scale(1) translate(-50%, -50%)',\n transformOrigin: '0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'circular',\n style: {\n bottom: '14%',\n left: '14%',\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: {\n invisible: true\n },\n style: {\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeInOut,\n duration: theme.transitions.duration.leavingScreen\n })\n }\n }]\n})));\nconst Badge = /*#__PURE__*/React.forwardRef(function Badge(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiBadge'\n });\n const {\n anchorOrigin: anchorOriginProp = {\n vertical: 'top',\n horizontal: 'right'\n },\n className,\n classes: classesProp,\n component,\n components = {},\n componentsProps = {},\n children,\n overlap: overlapProp = 'rectangular',\n color: colorProp = 'default',\n invisible: invisibleProp = false,\n max: maxProp = 99,\n badgeContent: badgeContentProp,\n slots,\n slotProps,\n showZero = false,\n variant: variantProp = 'standard',\n ...other\n } = props;\n const {\n badgeContent,\n invisible: invisibleFromHook,\n max,\n displayValue: displayValueFromHook\n } = useBadge({\n max: maxProp,\n invisible: invisibleProp,\n badgeContent: badgeContentProp,\n showZero\n });\n const prevProps = usePreviousProps({\n anchorOrigin: anchorOriginProp,\n color: colorProp,\n overlap: overlapProp,\n variant: variantProp,\n badgeContent: badgeContentProp\n });\n const invisible = invisibleFromHook || badgeContent == null && variantProp !== 'dot';\n const {\n color = colorProp,\n overlap = overlapProp,\n anchorOrigin = anchorOriginProp,\n variant = variantProp\n } = invisible ? prevProps : props;\n const displayValue = variant !== 'dot' ? displayValueFromHook : undefined;\n const ownerState = {\n ...props,\n badgeContent,\n invisible,\n max,\n displayValue,\n showZero,\n anchorOrigin,\n color,\n overlap,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n\n // support both `slots` and `components` for backward compatibility\n const RootSlot = slots?.root ?? components.Root ?? BadgeRoot;\n const BadgeSlot = slots?.badge ?? components.Badge ?? BadgeBadge;\n const rootSlotProps = slotProps?.root ?? componentsProps.root;\n const badgeSlotProps = slotProps?.badge ?? componentsProps.badge;\n const rootProps = useSlotProps({\n elementType: RootSlot,\n externalSlotProps: rootSlotProps,\n externalForwardedProps: other,\n additionalProps: {\n ref,\n as: component\n },\n ownerState,\n className: clsx(rootSlotProps?.className, classes.root, className)\n });\n const badgeProps = useSlotProps({\n elementType: BadgeSlot,\n externalSlotProps: badgeSlotProps,\n ownerState,\n className: clsx(classes.badge, badgeSlotProps?.className)\n });\n return /*#__PURE__*/_jsxs(RootSlot, {\n ...rootProps,\n children: [children, /*#__PURE__*/_jsx(BadgeSlot, {\n ...badgeProps,\n children: displayValue\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Badge.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The anchor of the badge.\n * @default {\n * vertical: 'top',\n * horizontal: 'right',\n * }\n */\n anchorOrigin: PropTypes.shape({\n horizontal: PropTypes.oneOf(['left', 'right']).isRequired,\n vertical: PropTypes.oneOf(['bottom', 'top']).isRequired\n }),\n /**\n * The content rendered within the badge.\n */\n badgeContent: PropTypes.node,\n /**\n * The badge will be added relative to this node.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'default'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The components used for each slot inside.\n *\n * @deprecated use the `slots` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n *\n * @default {}\n */\n components: PropTypes.shape({\n Badge: PropTypes.elementType,\n Root: PropTypes.elementType\n }),\n /**\n * The extra props for the slot components.\n * You can override the existing props or add new ones.\n *\n * @deprecated use the `slotProps` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n *\n * @default {}\n */\n componentsProps: PropTypes.shape({\n badge: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n root: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * If `true`, the badge is invisible.\n * @default false\n */\n invisible: PropTypes.bool,\n /**\n * Max count to show.\n * @default 99\n */\n max: PropTypes.number,\n /**\n * Wrapped shape the badge should overlap.\n * @default 'rectangular'\n */\n overlap: PropTypes.oneOf(['circular', 'rectangular']),\n /**\n * Controls whether the badge is hidden when `badgeContent` is zero.\n * @default false\n */\n showZero: PropTypes.bool,\n /**\n * The props used for each slot inside the Badge.\n * @default {}\n */\n slotProps: PropTypes.shape({\n badge: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n root: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside the Badge.\n * Either a string to use a HTML element or a component.\n * @default {}\n */\n slots: PropTypes.shape({\n badge: PropTypes.elementType,\n root: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'standard'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dot', 'standard']), PropTypes.string])\n} : void 0;\nexport default Badge;","'use client';\n\nimport { usePreviousProps } from '@mui/utils';\n/**\n *\n * Demos:\n *\n * - [Badge](https://mui.com/base-ui/react-badge/#hook)\n *\n * API:\n *\n * - [useBadge API](https://mui.com/base-ui/react-badge/hooks-api/#use-badge)\n */\nfunction useBadge(parameters) {\n const {\n badgeContent: badgeContentProp,\n invisible: invisibleProp = false,\n max: maxProp = 99,\n showZero = false\n } = parameters;\n const prevProps = usePreviousProps({\n badgeContent: badgeContentProp,\n max: maxProp\n });\n let invisible = invisibleProp;\n if (invisibleProp === false && badgeContentProp === 0 && !showZero) {\n invisible = true;\n }\n const {\n badgeContent,\n max = maxProp\n } = invisible ? prevProps : parameters;\n const displayValue = badgeContent && Number(badgeContent) > max ? `${max}+` : badgeContent;\n return {\n badgeContent,\n invisible,\n max,\n displayValue\n };\n}\nexport default useBadge;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getBadgeUtilityClass(slot) {\n return generateUtilityClass('MuiBadge', slot);\n}\nconst badgeClasses = generateUtilityClasses('MuiBadge', ['root', 'badge', 'dot', 'standard', 'anchorOriginTopRight', 'anchorOriginBottomRight', 'anchorOriginTopLeft', 'anchorOriginBottomLeft', 'invisible', 'colorError', 'colorInfo', 'colorPrimary', 'colorSecondary', 'colorSuccess', 'colorWarning', 'overlapRectangular', 'overlapCircular',\n// TODO: v6 remove the overlap value from these class keys\n'anchorOriginTopLeftCircular', 'anchorOriginTopLeftRectangular', 'anchorOriginTopRightCircular', 'anchorOriginTopRightRectangular', 'anchorOriginBottomLeftCircular', 'anchorOriginBottomLeftRectangular', 'anchorOriginBottomRightCircular', 'anchorOriginBottomRightRectangular']);\nexport default badgeClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport fabClasses, { getFabUtilityClass } from \"./fabClasses.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n color,\n variant,\n classes,\n size\n } = ownerState;\n const slots = {\n root: ['root', variant, `size${capitalize(size)}`, color === 'inherit' ? 'colorInherit' : color]\n };\n const composedClasses = composeClasses(slots, getFabUtilityClass, classes);\n return {\n ...classes,\n // forward the focused, disabled, etc. classes to the ButtonBase\n ...composedClasses\n };\n};\nconst FabRoot = styled(ButtonBase, {\n name: 'MuiFab',\n slot: 'Root',\n shouldForwardProp: prop => rootShouldForwardProp(prop) || prop === 'classes',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`size${capitalize(ownerState.size)}`], ownerState.color === 'inherit' && styles.colorInherit, styles[capitalize(ownerState.size)], styles[ownerState.color]];\n }\n})(memoTheme(({\n theme\n}) => ({\n ...theme.typography.button,\n minHeight: 36,\n transition: theme.transitions.create(['background-color', 'box-shadow', 'border-color'], {\n duration: theme.transitions.duration.short\n }),\n borderRadius: '50%',\n padding: 0,\n minWidth: 0,\n width: 56,\n height: 56,\n zIndex: (theme.vars || theme).zIndex.fab,\n boxShadow: (theme.vars || theme).shadows[6],\n '&:active': {\n boxShadow: (theme.vars || theme).shadows[12]\n },\n color: theme.vars ? theme.vars.palette.text.primary : theme.palette.getContrastText?.(theme.palette.grey[300]),\n backgroundColor: (theme.vars || theme).palette.grey[300],\n '&:hover': {\n backgroundColor: (theme.vars || theme).palette.grey.A100,\n // Reset on touch devices, it doesn't add specificity\n '@media (hover: none)': {\n backgroundColor: (theme.vars || theme).palette.grey[300]\n },\n textDecoration: 'none'\n },\n [`&.${fabClasses.focusVisible}`]: {\n boxShadow: (theme.vars || theme).shadows[6]\n },\n variants: [{\n props: {\n size: 'small'\n },\n style: {\n width: 40,\n height: 40\n }\n }, {\n props: {\n size: 'medium'\n },\n style: {\n width: 48,\n height: 48\n }\n }, {\n props: {\n variant: 'extended'\n },\n style: {\n borderRadius: 48 / 2,\n padding: '0 16px',\n width: 'auto',\n minHeight: 'auto',\n minWidth: 48,\n height: 48\n }\n }, {\n props: {\n variant: 'extended',\n size: 'small'\n },\n style: {\n width: 'auto',\n padding: '0 8px',\n borderRadius: 34 / 2,\n minWidth: 34,\n height: 34\n }\n }, {\n props: {\n variant: 'extended',\n size: 'medium'\n },\n style: {\n width: 'auto',\n padding: '0 16px',\n borderRadius: 40 / 2,\n minWidth: 40,\n height: 40\n }\n }, {\n props: {\n color: 'inherit'\n },\n style: {\n color: 'inherit'\n }\n }]\n})), memoTheme(({\n theme\n}) => ({\n variants: [...Object.entries(theme.palette).filter(createSimplePaletteValueFilter(['dark', 'contrastText'])) // check all the used fields in the style below\n .map(([color]) => ({\n props: {\n color\n },\n style: {\n color: (theme.vars || theme).palette[color].contrastText,\n backgroundColor: (theme.vars || theme).palette[color].main,\n '&:hover': {\n backgroundColor: (theme.vars || theme).palette[color].dark,\n // Reset on touch devices, it doesn't add specificity\n '@media (hover: none)': {\n backgroundColor: (theme.vars || theme).palette[color].main\n }\n }\n }\n }))]\n})), memoTheme(({\n theme\n}) => ({\n [`&.${fabClasses.disabled}`]: {\n color: (theme.vars || theme).palette.action.disabled,\n boxShadow: (theme.vars || theme).shadows[0],\n backgroundColor: (theme.vars || theme).palette.action.disabledBackground\n }\n})));\nconst Fab = /*#__PURE__*/React.forwardRef(function Fab(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiFab'\n });\n const {\n children,\n className,\n color = 'default',\n component = 'button',\n disabled = false,\n disableFocusRipple = false,\n focusVisibleClassName,\n size = 'large',\n variant = 'circular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n component,\n disabled,\n disableFocusRipple,\n size,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(FabRoot, {\n className: clsx(classes.root, className),\n component: component,\n disabled: disabled,\n focusRipple: !disableFocusRipple,\n focusVisibleClassName: clsx(classes.focusVisible, focusVisibleClassName),\n ownerState: ownerState,\n ref: ref,\n ...other,\n classes: classes,\n children: children\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Fab.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'default'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'error', 'info', 'inherit', 'primary', 'secondary', 'success', 'warning']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, the component is disabled.\n * @default false\n */\n disabled: PropTypes.bool,\n /**\n * If `true`, the keyboard focus ripple is disabled.\n * @default false\n */\n disableFocusRipple: PropTypes.bool,\n /**\n * If `true`, the ripple effect is disabled.\n */\n disableRipple: PropTypes.bool,\n /**\n * @ignore\n */\n focusVisibleClassName: PropTypes.string,\n /**\n * The URL to link to when the button is clicked.\n * If defined, an `a` element will be used as the root node.\n */\n href: PropTypes.string,\n /**\n * The size of the component.\n * `small` is equivalent to the dense button styling.\n * @default 'large'\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['small', 'medium', 'large']), PropTypes.string]),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'circular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['circular', 'extended']), PropTypes.string])\n} : void 0;\nexport default Fab;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getFabUtilityClass(slot) {\n return generateUtilityClass('MuiFab', slot);\n}\nconst fabClasses = generateUtilityClasses('MuiFab', ['root', 'primary', 'secondary', 'extended', 'circular', 'focusVisible', 'disabled', 'colorInherit', 'sizeSmall', 'sizeMedium', 'sizeLarge', 'info', 'error', 'warning', 'success']);\nexport default fabClasses;","import { Component, createElement } from 'react';\n\n/**\n * Detect Element Resize.\n * https://github.com/sdecima/javascript-detect-element-resize\n * Sebastian Decima\n *\n * Forked from version 0.5.3; includes the following modifications:\n * 1) Guard against unsafe 'window' and 'document' references (to support SSR).\n * 2) Defer initialization code via a top-level function wrapper (to support SSR).\n * 3) Avoid unnecessary reflows by not measuring size for scroll events bubbling from children.\n * 4) Add nonce for style element.\n * 5) Use 'export' statement over 'module.exports' assignment\n **/\n\n// Check `document` and `window` in case of server-side rendering\nlet windowObject;\nif (typeof window !== \"undefined\") {\n windowObject = window;\n\n // eslint-disable-next-line no-restricted-globals\n} else if (typeof self !== \"undefined\") {\n // eslint-disable-next-line no-restricted-globals\n windowObject = self;\n} else {\n windowObject = global;\n}\nlet cancelFrame = null;\nlet requestFrame = null;\nconst TIMEOUT_DURATION = 20;\nconst clearTimeoutFn = windowObject.clearTimeout;\nconst setTimeoutFn = windowObject.setTimeout;\nconst cancelAnimationFrameFn = windowObject.cancelAnimationFrame || windowObject.mozCancelAnimationFrame || windowObject.webkitCancelAnimationFrame;\nconst requestAnimationFrameFn = windowObject.requestAnimationFrame || windowObject.mozRequestAnimationFrame || windowObject.webkitRequestAnimationFrame;\nif (cancelAnimationFrameFn == null || requestAnimationFrameFn == null) {\n // For environments that don't support animation frame,\n // fallback to a setTimeout based approach.\n cancelFrame = clearTimeoutFn;\n requestFrame = function requestAnimationFrameViaSetTimeout(callback) {\n return setTimeoutFn(callback, TIMEOUT_DURATION);\n };\n} else {\n // Counter intuitively, environments that support animation frames can be trickier.\n // Chrome's \"Throttle non-visible cross-origin iframes\" flag can prevent rAFs from being called.\n // In this case, we should fallback to a setTimeout() implementation.\n cancelFrame = function cancelFrame([animationFrameID, timeoutID]) {\n cancelAnimationFrameFn(animationFrameID);\n clearTimeoutFn(timeoutID);\n };\n requestFrame = function requestAnimationFrameWithSetTimeoutFallback(callback) {\n const animationFrameID = requestAnimationFrameFn(function animationFrameCallback() {\n clearTimeoutFn(timeoutID);\n callback();\n });\n const timeoutID = setTimeoutFn(function timeoutCallback() {\n cancelAnimationFrameFn(animationFrameID);\n callback();\n }, TIMEOUT_DURATION);\n return [animationFrameID, timeoutID];\n };\n}\nfunction createDetectElementResize(nonce) {\n let animationKeyframes;\n let animationName;\n let animationStartEvent;\n let animationStyle;\n let checkTriggers;\n let resetTriggers;\n let scrollListener;\n const attachEvent = typeof document !== \"undefined\" && document.attachEvent;\n if (!attachEvent) {\n resetTriggers = function (element) {\n const triggers = element.__resizeTriggers__,\n expand = triggers.firstElementChild,\n contract = triggers.lastElementChild,\n expandChild = expand.firstElementChild;\n contract.scrollLeft = contract.scrollWidth;\n contract.scrollTop = contract.scrollHeight;\n expandChild.style.width = expand.offsetWidth + 1 + \"px\";\n expandChild.style.height = expand.offsetHeight + 1 + \"px\";\n expand.scrollLeft = expand.scrollWidth;\n expand.scrollTop = expand.scrollHeight;\n };\n checkTriggers = function (element) {\n return element.offsetWidth !== element.__resizeLast__.width || element.offsetHeight !== element.__resizeLast__.height;\n };\n scrollListener = function (e) {\n // Don't measure (which forces) reflow for scrolls that happen inside of children!\n if (e.target.className && typeof e.target.className.indexOf === \"function\" && e.target.className.indexOf(\"contract-trigger\") < 0 && e.target.className.indexOf(\"expand-trigger\") < 0) {\n return;\n }\n const element = this;\n resetTriggers(this);\n if (this.__resizeRAF__) {\n cancelFrame(this.__resizeRAF__);\n }\n this.__resizeRAF__ = requestFrame(function animationFrame() {\n if (checkTriggers(element)) {\n element.__resizeLast__.width = element.offsetWidth;\n element.__resizeLast__.height = element.offsetHeight;\n element.__resizeListeners__.forEach(function forEachResizeListener(fn) {\n fn.call(element, e);\n });\n }\n });\n };\n\n /* Detect CSS Animations support to detect element display/re-attach */\n let animation = false;\n let keyframeprefix = \"\";\n animationStartEvent = \"animationstart\";\n const domPrefixes = \"Webkit Moz O ms\".split(\" \");\n let startEvents = \"webkitAnimationStart animationstart oAnimationStart MSAnimationStart\".split(\" \");\n let pfx = \"\";\n {\n const elm = document.createElement(\"fakeelement\");\n if (elm.style.animationName !== undefined) {\n animation = true;\n }\n if (animation === false) {\n for (let i = 0; i < domPrefixes.length; i++) {\n if (elm.style[domPrefixes[i] + \"AnimationName\"] !== undefined) {\n pfx = domPrefixes[i];\n keyframeprefix = \"-\" + pfx.toLowerCase() + \"-\";\n animationStartEvent = startEvents[i];\n animation = true;\n break;\n }\n }\n }\n }\n animationName = \"resizeanim\";\n animationKeyframes = \"@\" + keyframeprefix + \"keyframes \" + animationName + \" { from { opacity: 0; } to { opacity: 0; } } \";\n animationStyle = keyframeprefix + \"animation: 1ms \" + animationName + \"; \";\n }\n const createStyles = function (doc) {\n if (!doc.getElementById(\"detectElementResize\")) {\n //opacity:0 works around a chrome bug https://code.google.com/p/chromium/issues/detail?id=286360\n const css = (animationKeyframes ? animationKeyframes : \"\") + \".resize-triggers { \" + (animationStyle ? animationStyle : \"\") + \"visibility: hidden; opacity: 0; } \" + '.resize-triggers, .resize-triggers > div, .contract-trigger:before { content: \" \"; display: block; position: absolute; top: 0; left: 0; height: 100%; width: 100%; overflow: hidden; z-index: -1; } .resize-triggers > div { background: #eee; overflow: auto; } .contract-trigger:before { width: 200%; height: 200%; }',\n head = doc.head || doc.getElementsByTagName(\"head\")[0],\n style = doc.createElement(\"style\");\n style.id = \"detectElementResize\";\n style.type = \"text/css\";\n if (nonce != null) {\n style.setAttribute(\"nonce\", nonce);\n }\n if (style.styleSheet) {\n style.styleSheet.cssText = css;\n } else {\n style.appendChild(doc.createTextNode(css));\n }\n head.appendChild(style);\n }\n };\n const addResizeListener = function (element, fn) {\n if (attachEvent) {\n element.attachEvent(\"onresize\", fn);\n } else {\n if (!element.__resizeTriggers__) {\n const doc = element.ownerDocument;\n const elementStyle = windowObject.getComputedStyle(element);\n if (elementStyle && elementStyle.position === \"static\") {\n element.style.position = \"relative\";\n }\n createStyles(doc);\n element.__resizeLast__ = {};\n element.__resizeListeners__ = [];\n (element.__resizeTriggers__ = doc.createElement(\"div\")).className = \"resize-triggers\";\n const expandTrigger = doc.createElement(\"div\");\n expandTrigger.className = \"expand-trigger\";\n expandTrigger.appendChild(doc.createElement(\"div\"));\n const contractTrigger = doc.createElement(\"div\");\n contractTrigger.className = \"contract-trigger\";\n element.__resizeTriggers__.appendChild(expandTrigger);\n element.__resizeTriggers__.appendChild(contractTrigger);\n element.appendChild(element.__resizeTriggers__);\n resetTriggers(element);\n element.addEventListener(\"scroll\", scrollListener, true);\n\n /* Listen for a css animation to detect element display/re-attach */\n if (animationStartEvent) {\n element.__resizeTriggers__.__animationListener__ = function animationListener(e) {\n if (e.animationName === animationName) {\n resetTriggers(element);\n }\n };\n element.__resizeTriggers__.addEventListener(animationStartEvent, element.__resizeTriggers__.__animationListener__);\n }\n }\n element.__resizeListeners__.push(fn);\n }\n };\n const removeResizeListener = function (element, fn) {\n if (attachEvent) {\n element.detachEvent(\"onresize\", fn);\n } else {\n element.__resizeListeners__.splice(element.__resizeListeners__.indexOf(fn), 1);\n if (!element.__resizeListeners__.length) {\n element.removeEventListener(\"scroll\", scrollListener, true);\n if (element.__resizeTriggers__.__animationListener__) {\n element.__resizeTriggers__.removeEventListener(animationStartEvent, element.__resizeTriggers__.__animationListener__);\n element.__resizeTriggers__.__animationListener__ = null;\n }\n try {\n element.__resizeTriggers__ = !element.removeChild(element.__resizeTriggers__);\n } catch (e) {\n // Preact compat; see developit/preact-compat/issues/228\n }\n }\n }\n };\n return {\n addResizeListener,\n removeResizeListener\n };\n}\n\nclass AutoSizer extends Component {\n constructor(...args) {\n super(...args);\n this.state = {\n height: this.props.defaultHeight || 0,\n scaledHeight: this.props.defaultHeight || 0,\n scaledWidth: this.props.defaultWidth || 0,\n width: this.props.defaultWidth || 0\n };\n this._autoSizer = null;\n this._detectElementResize = null;\n this._parentNode = null;\n this._resizeObserver = null;\n this._timeoutId = null;\n this._onResize = () => {\n this._timeoutId = null;\n const {\n disableHeight,\n disableWidth,\n onResize\n } = this.props;\n if (this._parentNode) {\n // Guard against AutoSizer component being removed from the DOM immediately after being added.\n // This can result in invalid style values which can result in NaN values if we don't handle them.\n // See issue #150 for more context.\n\n const style = window.getComputedStyle(this._parentNode) || {};\n const paddingLeft = parseFloat(style.paddingLeft || \"0\");\n const paddingRight = parseFloat(style.paddingRight || \"0\");\n const paddingTop = parseFloat(style.paddingTop || \"0\");\n const paddingBottom = parseFloat(style.paddingBottom || \"0\");\n const rect = this._parentNode.getBoundingClientRect();\n const scaledHeight = rect.height - paddingTop - paddingBottom;\n const scaledWidth = rect.width - paddingLeft - paddingRight;\n const height = this._parentNode.offsetHeight - paddingTop - paddingBottom;\n const width = this._parentNode.offsetWidth - paddingLeft - paddingRight;\n if (!disableHeight && (this.state.height !== height || this.state.scaledHeight !== scaledHeight) || !disableWidth && (this.state.width !== width || this.state.scaledWidth !== scaledWidth)) {\n this.setState({\n height,\n width,\n scaledHeight,\n scaledWidth\n });\n if (typeof onResize === \"function\") {\n onResize({\n height,\n scaledHeight,\n scaledWidth,\n width\n });\n }\n }\n }\n };\n this._setRef = autoSizer => {\n this._autoSizer = autoSizer;\n };\n }\n componentDidMount() {\n const {\n nonce\n } = this.props;\n const parentNode = this._autoSizer ? this._autoSizer.parentNode : null;\n if (parentNode != null && parentNode.ownerDocument && parentNode.ownerDocument.defaultView && parentNode instanceof parentNode.ownerDocument.defaultView.HTMLElement) {\n // Delay access of parentNode until mount.\n // This handles edge-cases where the component has already been unmounted before its ref has been set,\n // As well as libraries like react-lite which have a slightly different lifecycle.\n this._parentNode = parentNode;\n\n // Use ResizeObserver from the same context where parentNode (which we will observe) was defined\n // Using just global can result into onResize events not being emitted in cases with multiple realms\n const ResizeObserverInstance = parentNode.ownerDocument.defaultView.ResizeObserver;\n if (ResizeObserverInstance != null) {\n this._resizeObserver = new ResizeObserverInstance(() => {\n // Guard against \"ResizeObserver loop limit exceeded\" error;\n // could be triggered if the state update causes the ResizeObserver handler to run long.\n // See https://github.com/bvaughn/react-virtualized-auto-sizer/issues/55\n this._timeoutId = setTimeout(this._onResize, 0);\n });\n this._resizeObserver.observe(parentNode);\n } else {\n // Defer requiring resize handler in order to support server-side rendering.\n // See issue #41\n this._detectElementResize = createDetectElementResize(nonce);\n this._detectElementResize.addResizeListener(parentNode, this._onResize);\n }\n this._onResize();\n }\n }\n componentWillUnmount() {\n if (this._parentNode) {\n if (this._detectElementResize) {\n this._detectElementResize.removeResizeListener(this._parentNode, this._onResize);\n }\n if (this._timeoutId !== null) {\n clearTimeout(this._timeoutId);\n }\n if (this._resizeObserver) {\n this._resizeObserver.disconnect();\n }\n }\n }\n render() {\n const {\n children,\n defaultHeight,\n defaultWidth,\n disableHeight = false,\n disableWidth = false,\n doNotBailOutOnEmptyChildren = false,\n nonce,\n onResize,\n style = {},\n tagName = \"div\",\n ...rest\n } = this.props;\n const {\n height,\n scaledHeight,\n scaledWidth,\n width\n } = this.state;\n\n // Outer div should not force width/height since that may prevent containers from shrinking.\n // Inner component should overflow and use calculated width/height.\n // See issue #68 for more information.\n const outerStyle = {\n overflow: \"visible\"\n };\n const childParams = {};\n\n // Avoid rendering children before the initial measurements have been collected.\n // At best this would just be wasting cycles.\n let bailoutOnChildren = false;\n if (!disableHeight) {\n if (height === 0) {\n bailoutOnChildren = true;\n }\n outerStyle.height = 0;\n childParams.height = height;\n childParams.scaledHeight = scaledHeight;\n }\n if (!disableWidth) {\n if (width === 0) {\n bailoutOnChildren = true;\n }\n outerStyle.width = 0;\n childParams.width = width;\n childParams.scaledWidth = scaledWidth;\n }\n if (doNotBailOutOnEmptyChildren) {\n bailoutOnChildren = false;\n }\n return createElement(tagName, {\n ref: this._setRef,\n style: {\n ...outerStyle,\n ...style\n },\n ...rest\n }, !bailoutOnChildren && children(childParams));\n }\n}\n\nfunction isHeightAndWidthProps(props) {\n return props && props.disableHeight !== true && props.disableWidth !== true;\n}\nfunction isHeightOnlyProps(props) {\n return props && props.disableHeight !== true && props.disableWidth === true;\n}\nfunction isWidthOnlyProps(props) {\n return props && props.disableHeight === true && props.disableWidth !== true;\n}\n\nexport { AutoSizer as default, isHeightAndWidthProps, isHeightOnlyProps, isWidthOnlyProps };\n","// eslint-disable-next-line @typescript-eslint/no-empty-function\nexport var noop = function noop() {};\nexport var identity = function identity(value) {\n return value;\n};\nexport var createBasicRecord = function createBasicRecord(pub, parent) {\n if (parent === void 0) {\n parent = null;\n }\n\n return {\n child: null,\n isShown: parent ? parent.public.isOpen && parent.isShown : true,\n parent: parent,\n public: pub,\n sibling: null,\n visited: false\n };\n};\nexport var getIdByIndex = function getIdByIndex(index, _ref) {\n var getRecordData = _ref.getRecordData;\n\n var _getRecordData = getRecordData(index),\n id = _getRecordData.data.id;\n\n return id;\n};","import _extends from \"@babel/runtime/helpers/extends\";\nimport _assertThisInitialized from \"@babel/runtime/helpers/assertThisInitialized\";\nimport _inheritsLoose from \"@babel/runtime/helpers/inheritsLoose\";\n\n/* eslint-disable no-labels,max-depth,complexity */\nimport React, { createRef, PureComponent } from 'react';\nimport mergeRefs from 'react-merge-refs';\nimport { noop } from './utils';\n// eslint-disable-next-line @typescript-eslint/naming-convention,@typescript-eslint/prefer-readonly-parameter-types\nexport var Row = function Row(_ref) {\n var index = _ref.index,\n _ref$data = _ref.data,\n Node = _ref$data.component,\n getRecordData = _ref$data.getRecordData,\n treeData = _ref$data.treeData,\n style = _ref.style,\n isScrolling = _ref.isScrolling;\n var data = getRecordData(index);\n return /*#__PURE__*/React.createElement(Node, Object.assign({\n isScrolling: isScrolling,\n style: style,\n treeData: treeData\n }, data));\n};\n\n// If refresh is required, we will run the TreeWalker. It will completely\n// update all requests and reset every state to default.\nvar generateNewTree = function generateNewTree(_ref2, _ref3, state) {\n var createRecord = _ref2.createRecord;\n var buildingTaskTimeout = _ref3.buildingTaskTimeout,\n placeholder = _ref3.placeholder,\n _ref3$async = _ref3.async,\n async = _ref3$async === void 0 ? false : _ref3$async,\n treeWalker = _ref3.treeWalker;\n var shouldPreservePreviousState = // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n async && state.records !== undefined;\n var previousRecords = state.records;\n var order = [];\n var records = new Map();\n var requestIdleCallbackOptions = buildingTaskTimeout ? {\n timeout: buildingTaskTimeout\n } : undefined;\n var meta = new WeakMap();\n var iter = treeWalker();\n\n var _iter$next = iter.next(),\n root = _iter$next.value; // Each record has a link to a parent, the next sibling and the next child.\n // Having this info, we can perform a depth-first traverse.\n\n\n var rootRecord = createRecord(root.data, state, undefined, shouldPreservePreviousState ? previousRecords.get(root.data.id) : undefined);\n records.set(rootRecord.public.data.id, rootRecord);\n meta.set(rootRecord, root);\n var currentRecord = rootRecord;\n var isTraversingRoot = true;\n var tempRecord = rootRecord;\n var useIdleCallback = typeof 'requestIdleCallback' !== 'undefined' && placeholder !== undefined && // If placeholder is set to null and this is the first build, idle callback\n // won't be used. It is necessary for trees with async data which can be\n // extremely complex but the first build is quite easy. During the following\n // idle callbacks the old tree will be shown.\n !(placeholder === null && !state.order);\n var hasTime = useIdleCallback ? function (deadline) {\n return deadline.timeRemaining() > 0;\n } : function () {\n return true;\n };\n\n var task = function task(deadline) {\n while (currentRecord !== null) {\n if (!hasTime(deadline)) {\n requestIdleCallback(task, requestIdleCallbackOptions);\n return;\n }\n\n if (!currentRecord.visited) {\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-type-assertion\n var _iter$next2 = iter.next(meta.get(currentRecord)),\n child = _iter$next2.value; // When the generator returns the undefined value we consider that all\n // children are already sent and we need to select the new parent\n // element to get its children.\n\n\n if (child === undefined) {\n if (isTraversingRoot) {\n isTraversingRoot = false;\n } else {\n if (currentRecord.isShown) {\n order.push(currentRecord.public.data.id);\n }\n\n currentRecord.visited = currentRecord.child !== null;\n currentRecord = currentRecord.child !== null ? currentRecord.child : currentRecord.sibling !== null ? currentRecord.sibling : currentRecord.parent;\n }\n\n tempRecord = currentRecord;\n continue;\n }\n\n var childRecord = createRecord(child.data, state, isTraversingRoot ? undefined : currentRecord, shouldPreservePreviousState ? previousRecords.get(child.data.id) : undefined);\n records.set(childRecord.public.data.id, childRecord);\n meta.set(childRecord, child);\n\n if (!isTraversingRoot && tempRecord === currentRecord) {\n tempRecord.child = childRecord;\n } else {\n tempRecord.sibling = childRecord;\n }\n\n tempRecord = childRecord;\n } else {\n currentRecord.visited = false;\n currentRecord = currentRecord.sibling !== null ? currentRecord.sibling : currentRecord.parent;\n tempRecord = currentRecord;\n }\n }\n\n if (useIdleCallback) {\n state.setState({\n order: order,\n records: records,\n updateRequest: {}\n });\n }\n };\n\n if (useIdleCallback) {\n requestIdleCallback(task, requestIdleCallbackOptions);\n } else {\n task();\n } // If we want to preserve the previous state and use the requestIdleCallback,\n // we need to return the old state.\n\n\n return placeholder !== undefined && async && state.order ? state : {\n order: order,\n records: records\n };\n};\n\nvar MAX_FUNCTION_ARGUMENTS = 32768;\nvar SPLICE_DEFAULT_ARGUMENTS_NUMBER = 2; // If we need to perform only the update, treeWalker won't be used. Update will\n// work internally, traversing only the subtree of elements that require\n// update through the opennessState option.\n\nvar updateExistingTree = function updateExistingTree(_ref4, _ref5) {\n var order = _ref4.order,\n records = _ref4.records;\n var opennessState = _ref5.opennessState;\n\n if (typeof opennessState !== 'object') {\n return null;\n }\n\n for (var id in opennessState) {\n if (!records.has(id)) {\n continue;\n }\n\n var opts = opennessState[id];\n var ownerRecord = records.get(id); // Here we unify the shape of openness state options\n\n var _ref6 = typeof opts === 'boolean' ? {\n open: opts\n } : opts,\n open = _ref6.open,\n _ref6$subtreeCallback = _ref6.subtreeCallback,\n subtreeCallback = _ref6$subtreeCallback === void 0 ? noop : _ref6$subtreeCallback;\n\n var update = noop;\n var apply = noop;\n\n if (ownerRecord.isShown) {\n if (open) {\n (function () {\n // If received rules require us to open the subtree, we have 2 cases:\n // 1. The node is not opened yet. In this case we simply have to\n // calculate and add new ids.\n // 2. The node is opened already. In this case we have to remove all\n // existing ids and replace them with new ids.\n var index = order.indexOf(id); // Here we calculate a count of visible subtree nodes to remove from\n // `order`. Then we will replace the gap with the updated list of\n // subtree nodes.\n\n var recordNextToSubtree = ownerRecord;\n\n while (recordNextToSubtree !== null) {\n if (recordNextToSubtree.sibling !== null) {\n recordNextToSubtree = recordNextToSubtree.sibling;\n break;\n }\n\n recordNextToSubtree = recordNextToSubtree.parent;\n }\n\n var countToRemove = recordNextToSubtree === null ? order.length - 1 - index : order.indexOf(recordNextToSubtree.public.data.id) - 1 - index;\n var orderParts = [[index + 1, countToRemove]]; // Unfortunately, splice cannot work with big arrays. If array exceeds\n // some length it may fire an exception. The length is specific for\n // each engine; e.g., MDN says about 65536 for Webkit. So, to avoid this\n // overflow, I split `order` parts to chunks by 32768 elements in each\n // one. These chunks will be sent as arguments to the `splice` method.\n //\n // To avoid array concatenations which may cause Major GC, I set two\n // first arguments as `splice`'s `start` and `deleteCount` arguments.\n\n update = function update(record) {\n // We have to consider only the newly shown elements that are not in\n // the order list yet. We should do it AFTER the visibility update\n // happens because otherwise we won't be able to distinguish if the\n // element should be included in the order list.\n // Update record visibility\n record.isShown = record.parent ? record.parent.public.isOpen && record.parent.isShown : true;\n\n if (record.isShown) {\n var currentOrderPart = orderParts[orderParts.length - 1];\n currentOrderPart.push(record.public.data.id);\n\n if (currentOrderPart.length === MAX_FUNCTION_ARGUMENTS + SPLICE_DEFAULT_ARGUMENTS_NUMBER) {\n orderParts.push([index + 1 + MAX_FUNCTION_ARGUMENTS * orderParts.length, 0]);\n }\n }\n };\n\n apply = function apply() {\n for (var i = 0; i < orderParts.length; i++) {\n var _ref7;\n\n // @ts-expect-error: too generic for TS\n (_ref7 = order).splice.apply(_ref7, orderParts[i]);\n }\n };\n })();\n } else if (ownerRecord.public.isOpen) {\n (function () {\n // If received rules require us to close the subtree, we have to remove\n // all subtree ids from the order list.\n var index = order.indexOf(id);\n var count = 0;\n\n update = function update(record) {\n // We have to consider only currently visible subtree nodes BEFORE\n // their visibility is updated. Otherwise we will have incorrect\n // number of items to remove: we cannot remove elements that are not\n // in the order list.\n //\n // If we do it after the visibility update, we will be unable to\n // understand if the element is still in the order list.\n if (record.isShown) {\n count += 1;\n } // Update record visibility\n\n\n record.isShown = record.parent ? record.parent.public.isOpen && record.parent.isShown : true;\n };\n\n apply = function apply() {\n // Remove data after element with index\n order.splice(index + 1, count);\n };\n })();\n }\n }\n\n var currentRecord = ownerRecord;\n\n while (currentRecord !== null) {\n if (!currentRecord.visited) {\n currentRecord.public.isOpen = currentRecord === ownerRecord ? open : currentRecord.public.isOpen;\n subtreeCallback(currentRecord.public, ownerRecord.public);\n\n if (currentRecord !== ownerRecord) {\n update(currentRecord);\n }\n\n currentRecord.visited = currentRecord.child !== null; // This algorithm is a bit different from the visit algorithm in the\n // tree generator. We are restricted with the bounds of a subtree and\n // shouldn't go over it. So we cannot search for the ownerRecord's\n // parent or sibling because it will lead us out of the subtree.\n\n currentRecord = // Look for child in any case\n currentRecord.child !== null ? currentRecord.child : // Stop looking for next element if currentRecord is root.\n currentRecord === ownerRecord ? null : // Otherwise, look for sibling or parent\n currentRecord.sibling !== null ? currentRecord.sibling : currentRecord.parent;\n } else {\n currentRecord.visited = false;\n currentRecord = currentRecord === ownerRecord ? null : currentRecord.sibling !== null ? currentRecord.sibling : currentRecord.parent;\n }\n }\n\n apply();\n }\n\n return {\n order: order,\n records: records,\n updateRequest: {}\n };\n};\n\nexport var createTreeComputer = function createTreeComputer(creatorOptions) {\n return function (props, state, options) {\n return options.refresh ? generateNewTree(creatorOptions, props, state) : updateExistingTree(state, options);\n };\n};\n\nvar Tree = /*#__PURE__*/function (_PureComponent) {\n _inheritsLoose(Tree, _PureComponent);\n\n Tree.getDerivedStateFromProps = function getDerivedStateFromProps(props, state) {\n var _props$listRef = props.listRef,\n listRef = _props$listRef === void 0 ? null : _props$listRef,\n treeWalker = props.treeWalker;\n var computeTree = state.computeTree,\n list = state.list,\n order = state.order,\n oldTreeWalker = state.treeWalker;\n return _extends({\n attachRefs: mergeRefs([list, listRef])\n }, treeWalker !== oldTreeWalker || !order ? computeTree(props, state, {\n refresh: true\n }) : null, {\n treeWalker: treeWalker\n });\n };\n\n function Tree(props, context) {\n var _this;\n\n _this = _PureComponent.call(this, props, context) || this;\n _this.getRecordData = _this.getRecordData.bind(_assertThisInitialized(_this));\n /* eslint-disable react/no-unused-state,@typescript-eslint/consistent-type-assertions */\n\n _this.state = {\n list: /*#__PURE__*/createRef(),\n recomputeTree: _this.recomputeTree.bind(_assertThisInitialized(_this)),\n setState: _this.setState.bind(_assertThisInitialized(_this))\n };\n /* eslint-enable react/no-unused-state,@typescript-eslint/consistent-type-assertions */\n\n return _this;\n }\n\n var _proto = Tree.prototype;\n\n _proto.getItemData = function getItemData() {\n var _this$props = this.props,\n component = _this$props.children,\n treeData = _this$props.itemData;\n return {\n component: component,\n // eslint-disable-next-line @typescript-eslint/unbound-method\n getRecordData: this.getRecordData,\n treeData: treeData\n };\n };\n\n _proto.getRecordData = function getRecordData(index) {\n var _this$state = this.state,\n order = _this$state.order,\n records = _this$state.records;\n return records.get(order[index]).public;\n };\n\n _proto.recomputeTree = function recomputeTree(state) {\n var _this2 = this;\n\n return new Promise(function (resolve) {\n _this2.setState(function (prevState) {\n return prevState.computeTree(_this2.props, prevState, {\n opennessState: state\n });\n }, resolve);\n });\n };\n\n _proto.scrollTo = function scrollTo(scrollOffset) {\n var _this$state$list$curr;\n\n // eslint-disable-next-line react/destructuring-assignment\n (_this$state$list$curr = this.state.list.current) == null ? void 0 : _this$state$list$curr.scrollTo(scrollOffset);\n };\n\n _proto.scrollToItem = function scrollToItem(id, align) {\n var _this$state$list$curr2;\n\n // eslint-disable-next-line react/destructuring-assignment\n (_this$state$list$curr2 = this.state.list.current) == null ? void 0 : _this$state$list$curr2.scrollToItem(this.state.order.indexOf(id), align);\n };\n\n return Tree;\n}(PureComponent);\n\nTree.defaultProps = {\n rowComponent: Row\n};\nexport default Tree;","import * as React from \"react\";\n\nexport default function mergeRefs(\n refs: Array | React.LegacyRef>\n): React.RefCallback {\n return (value) => {\n refs.forEach((ref) => {\n if (typeof ref === \"function\") {\n ref(value);\n } else if (ref != null) {\n (ref as React.MutableRefObject).current = value;\n }\n });\n };\n}\n","import _objectWithoutPropertiesLoose from \"@babel/runtime/helpers/objectWithoutPropertiesLoose\";\nimport _extends from \"@babel/runtime/helpers/extends\";\nimport _inheritsLoose from \"@babel/runtime/helpers/inheritsLoose\";\nimport React from 'react';\nimport { FixedSizeList } from 'react-window';\nimport Tree, { createTreeComputer } from './Tree';\nimport { createBasicRecord, getIdByIndex } from './utils';\nvar computeTree = createTreeComputer({\n createRecord: function createRecord(data, _ref, parent, previousRecord) {\n var recomputeTree = _ref.recomputeTree;\n return createBasicRecord({\n data: data,\n isOpen: previousRecord ? previousRecord.public.isOpen : data.isOpenByDefault,\n setOpen: function setOpen(state) {\n var _recomputeTree;\n\n return recomputeTree((_recomputeTree = {}, _recomputeTree[data.id] = state, _recomputeTree));\n }\n }, parent);\n }\n});\nexport var FixedSizeTree = /*#__PURE__*/function (_Tree) {\n _inheritsLoose(FixedSizeTree, _Tree);\n\n function FixedSizeTree(props, context) {\n var _this;\n\n _this = _Tree.call(this, props, context) || this;\n _this.state = _extends({}, _this.state, {\n computeTree: computeTree\n });\n return _this;\n }\n\n var _proto = FixedSizeTree.prototype;\n\n _proto.render = function render() {\n var _this$props = this.props,\n children = _this$props.children,\n listRef = _this$props.listRef,\n placeholder = _this$props.placeholder,\n treeWalker = _this$props.treeWalker,\n rowComponent = _this$props.rowComponent,\n rest = _objectWithoutPropertiesLoose(_this$props, [\"children\", \"listRef\", \"placeholder\", \"treeWalker\", \"rowComponent\"]);\n\n var _this$state = this.state,\n attachRefs = _this$state.attachRefs,\n order = _this$state.order;\n return placeholder && order.length === 0 ? placeholder : /*#__PURE__*/React.createElement(FixedSizeList, Object.assign({}, rest, {\n itemCount: order.length,\n itemData: this.getItemData() // eslint-disable-next-line @typescript-eslint/unbound-method\n ,\n itemKey: getIdByIndex // eslint-disable-next-line @typescript-eslint/unbound-method\n ,\n ref: attachRefs\n }), rowComponent);\n };\n\n return FixedSizeTree;\n}(Tree);","var safeIsNaN = Number.isNaN ||\n function ponyfill(value) {\n return typeof value === 'number' && value !== value;\n };\nfunction isEqual(first, second) {\n if (first === second) {\n return true;\n }\n if (safeIsNaN(first) && safeIsNaN(second)) {\n return true;\n }\n return false;\n}\nfunction areInputsEqual(newInputs, lastInputs) {\n if (newInputs.length !== lastInputs.length) {\n return false;\n }\n for (var i = 0; i < newInputs.length; i++) {\n if (!isEqual(newInputs[i], lastInputs[i])) {\n return false;\n }\n }\n return true;\n}\n\nfunction memoizeOne(resultFn, isEqual) {\n if (isEqual === void 0) { isEqual = areInputsEqual; }\n var lastThis;\n var lastArgs = [];\n var lastResult;\n var calledOnce = false;\n function memoized() {\n var newArgs = [];\n for (var _i = 0; _i < arguments.length; _i++) {\n newArgs[_i] = arguments[_i];\n }\n if (calledOnce && lastThis === this && isEqual(newArgs, lastArgs)) {\n return lastResult;\n }\n lastResult = resultFn.apply(this, newArgs);\n calledOnce = true;\n lastThis = this;\n lastArgs = newArgs;\n return lastResult;\n }\n return memoized;\n}\n\nexport default memoizeOne;\n","// @flow\n\n// Animation frame based implementation of setTimeout.\n// Inspired by Joe Lambert, https://gist.github.com/joelambert/1002116#file-requesttimeout-js\n\nconst hasNativePerformanceNow =\n typeof performance === 'object' && typeof performance.now === 'function';\n\nconst now = hasNativePerformanceNow\n ? () => performance.now()\n : () => Date.now();\n\nexport type TimeoutID = {|\n id: AnimationFrameID,\n|};\n\nexport function cancelTimeout(timeoutID: TimeoutID) {\n cancelAnimationFrame(timeoutID.id);\n}\n\nexport function requestTimeout(callback: Function, delay: number): TimeoutID {\n const start = now();\n\n function tick() {\n if (now() - start >= delay) {\n callback.call(null);\n } else {\n timeoutID.id = requestAnimationFrame(tick);\n }\n }\n\n const timeoutID: TimeoutID = {\n id: requestAnimationFrame(tick),\n };\n\n return timeoutID;\n}\n","// @flow\n\nlet size: number = -1;\n\n// This utility copied from \"dom-helpers\" package.\nexport function getScrollbarSize(recalculate?: boolean = false): number {\n if (size === -1 || recalculate) {\n const div = document.createElement('div');\n const style = div.style;\n style.width = '50px';\n style.height = '50px';\n style.overflow = 'scroll';\n\n ((document.body: any): HTMLBodyElement).appendChild(div);\n\n size = div.offsetWidth - div.clientWidth;\n\n ((document.body: any): HTMLBodyElement).removeChild(div);\n }\n\n return size;\n}\n\nexport type RTLOffsetType =\n | 'negative'\n | 'positive-descending'\n | 'positive-ascending';\n\nlet cachedRTLResult: RTLOffsetType | null = null;\n\n// TRICKY According to the spec, scrollLeft should be negative for RTL aligned elements.\n// Chrome does not seem to adhere; its scrollLeft values are positive (measured relative to the left).\n// Safari's elastic bounce makes detecting this even more complicated wrt potential false positives.\n// The safest way to check this is to intentionally set a negative offset,\n// and then verify that the subsequent \"scroll\" event matches the negative offset.\n// If it does not match, then we can assume a non-standard RTL scroll implementation.\nexport function getRTLOffsetType(recalculate?: boolean = false): RTLOffsetType {\n if (cachedRTLResult === null || recalculate) {\n const outerDiv = document.createElement('div');\n const outerStyle = outerDiv.style;\n outerStyle.width = '50px';\n outerStyle.height = '50px';\n outerStyle.overflow = 'scroll';\n outerStyle.direction = 'rtl';\n\n const innerDiv = document.createElement('div');\n const innerStyle = innerDiv.style;\n innerStyle.width = '100px';\n innerStyle.height = '100px';\n\n outerDiv.appendChild(innerDiv);\n\n ((document.body: any): HTMLBodyElement).appendChild(outerDiv);\n\n if (outerDiv.scrollLeft > 0) {\n cachedRTLResult = 'positive-descending';\n } else {\n outerDiv.scrollLeft = 1;\n if (outerDiv.scrollLeft === 0) {\n cachedRTLResult = 'negative';\n } else {\n cachedRTLResult = 'positive-ascending';\n }\n }\n\n ((document.body: any): HTMLBodyElement).removeChild(outerDiv);\n\n return cachedRTLResult;\n }\n\n return cachedRTLResult;\n}\n","// @flow\n\nimport memoizeOne from 'memoize-one';\nimport { createElement, PureComponent } from 'react';\nimport { cancelTimeout, requestTimeout } from './timer';\nimport { getScrollbarSize, getRTLOffsetType } from './domHelpers';\n\nimport type { TimeoutID } from './timer';\n\ntype Direction = 'ltr' | 'rtl';\nexport type ScrollToAlign = 'auto' | 'smart' | 'center' | 'start' | 'end';\n\ntype itemSize = number | ((index: number) => number);\n\ntype RenderComponentProps = {|\n columnIndex: number,\n data: T,\n isScrolling?: boolean,\n rowIndex: number,\n style: Object,\n|};\nexport type RenderComponent = React$ComponentType<\n $Shape>\n>;\n\ntype ScrollDirection = 'forward' | 'backward';\n\ntype OnItemsRenderedCallback = ({\n overscanColumnStartIndex: number,\n overscanColumnStopIndex: number,\n overscanRowStartIndex: number,\n overscanRowStopIndex: number,\n visibleColumnStartIndex: number,\n visibleColumnStopIndex: number,\n visibleRowStartIndex: number,\n visibleRowStopIndex: number,\n}) => void;\ntype OnScrollCallback = ({\n horizontalScrollDirection: ScrollDirection,\n scrollLeft: number,\n scrollTop: number,\n scrollUpdateWasRequested: boolean,\n verticalScrollDirection: ScrollDirection,\n}) => void;\n\ntype ScrollEvent = SyntheticEvent;\ntype ItemStyleCache = { [key: string]: Object };\n\ntype OuterProps = {|\n children: React$Node,\n className: string | void,\n onScroll: ScrollEvent => void,\n style: {\n [string]: mixed,\n },\n|};\n\ntype InnerProps = {|\n children: React$Node,\n style: {\n [string]: mixed,\n },\n|};\n\nexport type Props = {|\n children: RenderComponent,\n className?: string,\n columnCount: number,\n columnWidth: itemSize,\n direction: Direction,\n height: number,\n initialScrollLeft?: number,\n initialScrollTop?: number,\n innerRef?: any,\n innerElementType?: string | React$AbstractComponent,\n innerTagName?: string, // deprecated\n itemData: T,\n itemKey?: (params: {|\n columnIndex: number,\n data: T,\n rowIndex: number,\n |}) => any,\n onItemsRendered?: OnItemsRenderedCallback,\n onScroll?: OnScrollCallback,\n outerRef?: any,\n outerElementType?: string | React$AbstractComponent,\n outerTagName?: string, // deprecated\n overscanColumnCount?: number,\n overscanColumnsCount?: number, // deprecated\n overscanCount?: number, // deprecated\n overscanRowCount?: number,\n overscanRowsCount?: number, // deprecated\n rowCount: number,\n rowHeight: itemSize,\n style?: Object,\n useIsScrolling: boolean,\n width: number,\n|};\n\ntype State = {|\n instance: any,\n isScrolling: boolean,\n horizontalScrollDirection: ScrollDirection,\n scrollLeft: number,\n scrollTop: number,\n scrollUpdateWasRequested: boolean,\n verticalScrollDirection: ScrollDirection,\n|};\n\ntype getItemOffset = (\n props: Props,\n index: number,\n instanceProps: any\n) => number;\ntype getItemSize = (\n props: Props,\n index: number,\n instanceProps: any\n) => number;\ntype getEstimatedTotalSize = (props: Props, instanceProps: any) => number;\ntype GetOffsetForItemAndAlignment = (\n props: Props,\n index: number,\n align: ScrollToAlign,\n scrollOffset: number,\n instanceProps: any,\n scrollbarSize: number\n) => number;\ntype GetStartIndexForOffset = (\n props: Props,\n offset: number,\n instanceProps: any\n) => number;\ntype GetStopIndexForStartIndex = (\n props: Props,\n startIndex: number,\n scrollOffset: number,\n instanceProps: any\n) => number;\ntype InitInstanceProps = (props: Props, instance: any) => any;\ntype ValidateProps = (props: Props) => void;\n\nconst IS_SCROLLING_DEBOUNCE_INTERVAL = 150;\n\nconst defaultItemKey = ({ columnIndex, data, rowIndex }) =>\n `${rowIndex}:${columnIndex}`;\n\n// In DEV mode, this Set helps us only log a warning once per component instance.\n// This avoids spamming the console every time a render happens.\nlet devWarningsOverscanCount = null;\nlet devWarningsOverscanRowsColumnsCount = null;\nlet devWarningsTagName = null;\nif (process.env.NODE_ENV !== 'production') {\n if (typeof window !== 'undefined' && typeof window.WeakSet !== 'undefined') {\n devWarningsOverscanCount = new WeakSet();\n devWarningsOverscanRowsColumnsCount = new WeakSet();\n devWarningsTagName = new WeakSet();\n }\n}\n\nexport default function createGridComponent({\n getColumnOffset,\n getColumnStartIndexForOffset,\n getColumnStopIndexForStartIndex,\n getColumnWidth,\n getEstimatedTotalHeight,\n getEstimatedTotalWidth,\n getOffsetForColumnAndAlignment,\n getOffsetForRowAndAlignment,\n getRowHeight,\n getRowOffset,\n getRowStartIndexForOffset,\n getRowStopIndexForStartIndex,\n initInstanceProps,\n shouldResetStyleCacheOnItemSizeChange,\n validateProps,\n}: {|\n getColumnOffset: getItemOffset,\n getColumnStartIndexForOffset: GetStartIndexForOffset,\n getColumnStopIndexForStartIndex: GetStopIndexForStartIndex,\n getColumnWidth: getItemSize,\n getEstimatedTotalHeight: getEstimatedTotalSize,\n getEstimatedTotalWidth: getEstimatedTotalSize,\n getOffsetForColumnAndAlignment: GetOffsetForItemAndAlignment,\n getOffsetForRowAndAlignment: GetOffsetForItemAndAlignment,\n getRowOffset: getItemOffset,\n getRowHeight: getItemSize,\n getRowStartIndexForOffset: GetStartIndexForOffset,\n getRowStopIndexForStartIndex: GetStopIndexForStartIndex,\n initInstanceProps: InitInstanceProps,\n shouldResetStyleCacheOnItemSizeChange: boolean,\n validateProps: ValidateProps,\n|}) {\n return class Grid extends PureComponent, State> {\n _instanceProps: any = initInstanceProps(this.props, this);\n _resetIsScrollingTimeoutId: TimeoutID | null = null;\n _outerRef: ?HTMLDivElement;\n\n static defaultProps = {\n direction: 'ltr',\n itemData: undefined,\n useIsScrolling: false,\n };\n\n state: State = {\n instance: this,\n isScrolling: false,\n horizontalScrollDirection: 'forward',\n scrollLeft:\n typeof this.props.initialScrollLeft === 'number'\n ? this.props.initialScrollLeft\n : 0,\n scrollTop:\n typeof this.props.initialScrollTop === 'number'\n ? this.props.initialScrollTop\n : 0,\n scrollUpdateWasRequested: false,\n verticalScrollDirection: 'forward',\n };\n\n // Always use explicit constructor for React components.\n // It produces less code after transpilation. (#26)\n // eslint-disable-next-line no-useless-constructor\n constructor(props: Props) {\n super(props);\n }\n\n static getDerivedStateFromProps(\n nextProps: Props,\n prevState: State\n ): $Shape | null {\n validateSharedProps(nextProps, prevState);\n validateProps(nextProps);\n return null;\n }\n\n scrollTo({\n scrollLeft,\n scrollTop,\n }: {\n scrollLeft: number,\n scrollTop: number,\n }): void {\n if (scrollLeft !== undefined) {\n scrollLeft = Math.max(0, scrollLeft);\n }\n if (scrollTop !== undefined) {\n scrollTop = Math.max(0, scrollTop);\n }\n\n this.setState(prevState => {\n if (scrollLeft === undefined) {\n scrollLeft = prevState.scrollLeft;\n }\n if (scrollTop === undefined) {\n scrollTop = prevState.scrollTop;\n }\n\n if (\n prevState.scrollLeft === scrollLeft &&\n prevState.scrollTop === scrollTop\n ) {\n return null;\n }\n\n return {\n horizontalScrollDirection:\n prevState.scrollLeft < scrollLeft ? 'forward' : 'backward',\n scrollLeft: scrollLeft,\n scrollTop: scrollTop,\n scrollUpdateWasRequested: true,\n verticalScrollDirection:\n prevState.scrollTop < scrollTop ? 'forward' : 'backward',\n };\n }, this._resetIsScrollingDebounced);\n }\n\n scrollToItem({\n align = 'auto',\n columnIndex,\n rowIndex,\n }: {\n align: ScrollToAlign,\n columnIndex?: number,\n rowIndex?: number,\n }): void {\n const { columnCount, height, rowCount, width } = this.props;\n const { scrollLeft, scrollTop } = this.state;\n const scrollbarSize = getScrollbarSize();\n\n if (columnIndex !== undefined) {\n columnIndex = Math.max(0, Math.min(columnIndex, columnCount - 1));\n }\n if (rowIndex !== undefined) {\n rowIndex = Math.max(0, Math.min(rowIndex, rowCount - 1));\n }\n\n const estimatedTotalHeight = getEstimatedTotalHeight(\n this.props,\n this._instanceProps\n );\n const estimatedTotalWidth = getEstimatedTotalWidth(\n this.props,\n this._instanceProps\n );\n\n // The scrollbar size should be considered when scrolling an item into view,\n // to ensure it's fully visible.\n // But we only need to account for its size when it's actually visible.\n const horizontalScrollbarSize =\n estimatedTotalWidth > width ? scrollbarSize : 0;\n const verticalScrollbarSize =\n estimatedTotalHeight > height ? scrollbarSize : 0;\n\n this.scrollTo({\n scrollLeft:\n columnIndex !== undefined\n ? getOffsetForColumnAndAlignment(\n this.props,\n columnIndex,\n align,\n scrollLeft,\n this._instanceProps,\n verticalScrollbarSize\n )\n : scrollLeft,\n scrollTop:\n rowIndex !== undefined\n ? getOffsetForRowAndAlignment(\n this.props,\n rowIndex,\n align,\n scrollTop,\n this._instanceProps,\n horizontalScrollbarSize\n )\n : scrollTop,\n });\n }\n\n componentDidMount() {\n const { initialScrollLeft, initialScrollTop } = this.props;\n\n if (this._outerRef != null) {\n const outerRef = ((this._outerRef: any): HTMLElement);\n if (typeof initialScrollLeft === 'number') {\n outerRef.scrollLeft = initialScrollLeft;\n }\n if (typeof initialScrollTop === 'number') {\n outerRef.scrollTop = initialScrollTop;\n }\n }\n\n this._callPropsCallbacks();\n }\n\n componentDidUpdate() {\n const { direction } = this.props;\n const { scrollLeft, scrollTop, scrollUpdateWasRequested } = this.state;\n\n if (scrollUpdateWasRequested && this._outerRef != null) {\n // TRICKY According to the spec, scrollLeft should be negative for RTL aligned elements.\n // This is not the case for all browsers though (e.g. Chrome reports values as positive, measured relative to the left).\n // So we need to determine which browser behavior we're dealing with, and mimic it.\n const outerRef = ((this._outerRef: any): HTMLElement);\n if (direction === 'rtl') {\n switch (getRTLOffsetType()) {\n case 'negative':\n outerRef.scrollLeft = -scrollLeft;\n break;\n case 'positive-ascending':\n outerRef.scrollLeft = scrollLeft;\n break;\n default:\n const { clientWidth, scrollWidth } = outerRef;\n outerRef.scrollLeft = scrollWidth - clientWidth - scrollLeft;\n break;\n }\n } else {\n outerRef.scrollLeft = Math.max(0, scrollLeft);\n }\n\n outerRef.scrollTop = Math.max(0, scrollTop);\n }\n\n this._callPropsCallbacks();\n }\n\n componentWillUnmount() {\n if (this._resetIsScrollingTimeoutId !== null) {\n cancelTimeout(this._resetIsScrollingTimeoutId);\n }\n }\n\n render() {\n const {\n children,\n className,\n columnCount,\n direction,\n height,\n innerRef,\n innerElementType,\n innerTagName,\n itemData,\n itemKey = defaultItemKey,\n outerElementType,\n outerTagName,\n rowCount,\n style,\n useIsScrolling,\n width,\n } = this.props;\n const { isScrolling } = this.state;\n\n const [\n columnStartIndex,\n columnStopIndex,\n ] = this._getHorizontalRangeToRender();\n const [rowStartIndex, rowStopIndex] = this._getVerticalRangeToRender();\n\n const items = [];\n if (columnCount > 0 && rowCount) {\n for (\n let rowIndex = rowStartIndex;\n rowIndex <= rowStopIndex;\n rowIndex++\n ) {\n for (\n let columnIndex = columnStartIndex;\n columnIndex <= columnStopIndex;\n columnIndex++\n ) {\n items.push(\n createElement(children, {\n columnIndex,\n data: itemData,\n isScrolling: useIsScrolling ? isScrolling : undefined,\n key: itemKey({ columnIndex, data: itemData, rowIndex }),\n rowIndex,\n style: this._getItemStyle(rowIndex, columnIndex),\n })\n );\n }\n }\n }\n\n // Read this value AFTER items have been created,\n // So their actual sizes (if variable) are taken into consideration.\n const estimatedTotalHeight = getEstimatedTotalHeight(\n this.props,\n this._instanceProps\n );\n const estimatedTotalWidth = getEstimatedTotalWidth(\n this.props,\n this._instanceProps\n );\n\n return createElement(\n outerElementType || outerTagName || 'div',\n {\n className,\n onScroll: this._onScroll,\n ref: this._outerRefSetter,\n style: {\n position: 'relative',\n height,\n width,\n overflow: 'auto',\n WebkitOverflowScrolling: 'touch',\n willChange: 'transform',\n direction,\n ...style,\n },\n },\n createElement(innerElementType || innerTagName || 'div', {\n children: items,\n ref: innerRef,\n style: {\n height: estimatedTotalHeight,\n pointerEvents: isScrolling ? 'none' : undefined,\n width: estimatedTotalWidth,\n },\n })\n );\n }\n\n _callOnItemsRendered: (\n overscanColumnStartIndex: number,\n overscanColumnStopIndex: number,\n overscanRowStartIndex: number,\n overscanRowStopIndex: number,\n visibleColumnStartIndex: number,\n visibleColumnStopIndex: number,\n visibleRowStartIndex: number,\n visibleRowStopIndex: number\n ) => void;\n _callOnItemsRendered = memoizeOne(\n (\n overscanColumnStartIndex: number,\n overscanColumnStopIndex: number,\n overscanRowStartIndex: number,\n overscanRowStopIndex: number,\n visibleColumnStartIndex: number,\n visibleColumnStopIndex: number,\n visibleRowStartIndex: number,\n visibleRowStopIndex: number\n ) =>\n ((this.props.onItemsRendered: any): OnItemsRenderedCallback)({\n overscanColumnStartIndex,\n overscanColumnStopIndex,\n overscanRowStartIndex,\n overscanRowStopIndex,\n visibleColumnStartIndex,\n visibleColumnStopIndex,\n visibleRowStartIndex,\n visibleRowStopIndex,\n })\n );\n\n _callOnScroll: (\n scrollLeft: number,\n scrollTop: number,\n horizontalScrollDirection: ScrollDirection,\n verticalScrollDirection: ScrollDirection,\n scrollUpdateWasRequested: boolean\n ) => void;\n _callOnScroll = memoizeOne(\n (\n scrollLeft: number,\n scrollTop: number,\n horizontalScrollDirection: ScrollDirection,\n verticalScrollDirection: ScrollDirection,\n scrollUpdateWasRequested: boolean\n ) =>\n ((this.props.onScroll: any): OnScrollCallback)({\n horizontalScrollDirection,\n scrollLeft,\n scrollTop,\n verticalScrollDirection,\n scrollUpdateWasRequested,\n })\n );\n\n _callPropsCallbacks() {\n const { columnCount, onItemsRendered, onScroll, rowCount } = this.props;\n\n if (typeof onItemsRendered === 'function') {\n if (columnCount > 0 && rowCount > 0) {\n const [\n overscanColumnStartIndex,\n overscanColumnStopIndex,\n visibleColumnStartIndex,\n visibleColumnStopIndex,\n ] = this._getHorizontalRangeToRender();\n const [\n overscanRowStartIndex,\n overscanRowStopIndex,\n visibleRowStartIndex,\n visibleRowStopIndex,\n ] = this._getVerticalRangeToRender();\n this._callOnItemsRendered(\n overscanColumnStartIndex,\n overscanColumnStopIndex,\n overscanRowStartIndex,\n overscanRowStopIndex,\n visibleColumnStartIndex,\n visibleColumnStopIndex,\n visibleRowStartIndex,\n visibleRowStopIndex\n );\n }\n }\n\n if (typeof onScroll === 'function') {\n const {\n horizontalScrollDirection,\n scrollLeft,\n scrollTop,\n scrollUpdateWasRequested,\n verticalScrollDirection,\n } = this.state;\n this._callOnScroll(\n scrollLeft,\n scrollTop,\n horizontalScrollDirection,\n verticalScrollDirection,\n scrollUpdateWasRequested\n );\n }\n }\n\n // Lazily create and cache item styles while scrolling,\n // So that pure component sCU will prevent re-renders.\n // We maintain this cache, and pass a style prop rather than index,\n // So that List can clear cached styles and force item re-render if necessary.\n _getItemStyle: (rowIndex: number, columnIndex: number) => Object;\n _getItemStyle = (rowIndex: number, columnIndex: number): Object => {\n const { columnWidth, direction, rowHeight } = this.props;\n\n const itemStyleCache = this._getItemStyleCache(\n shouldResetStyleCacheOnItemSizeChange && columnWidth,\n shouldResetStyleCacheOnItemSizeChange && direction,\n shouldResetStyleCacheOnItemSizeChange && rowHeight\n );\n\n const key = `${rowIndex}:${columnIndex}`;\n\n let style;\n if (itemStyleCache.hasOwnProperty(key)) {\n style = itemStyleCache[key];\n } else {\n const offset = getColumnOffset(\n this.props,\n columnIndex,\n this._instanceProps\n );\n const isRtl = direction === 'rtl';\n itemStyleCache[key] = style = {\n position: 'absolute',\n left: isRtl ? undefined : offset,\n right: isRtl ? offset : undefined,\n top: getRowOffset(this.props, rowIndex, this._instanceProps),\n height: getRowHeight(this.props, rowIndex, this._instanceProps),\n width: getColumnWidth(this.props, columnIndex, this._instanceProps),\n };\n }\n\n return style;\n };\n\n _getItemStyleCache: (_: any, __: any, ___: any) => ItemStyleCache;\n _getItemStyleCache = memoizeOne((_: any, __: any, ___: any) => ({}));\n\n _getHorizontalRangeToRender(): [number, number, number, number] {\n const {\n columnCount,\n overscanColumnCount,\n overscanColumnsCount,\n overscanCount,\n rowCount,\n } = this.props;\n const { horizontalScrollDirection, isScrolling, scrollLeft } = this.state;\n\n const overscanCountResolved: number =\n overscanColumnCount || overscanColumnsCount || overscanCount || 1;\n\n if (columnCount === 0 || rowCount === 0) {\n return [0, 0, 0, 0];\n }\n\n const startIndex = getColumnStartIndexForOffset(\n this.props,\n scrollLeft,\n this._instanceProps\n );\n const stopIndex = getColumnStopIndexForStartIndex(\n this.props,\n startIndex,\n scrollLeft,\n this._instanceProps\n );\n\n // Overscan by one item in each direction so that tab/focus works.\n // If there isn't at least one extra item, tab loops back around.\n const overscanBackward =\n !isScrolling || horizontalScrollDirection === 'backward'\n ? Math.max(1, overscanCountResolved)\n : 1;\n const overscanForward =\n !isScrolling || horizontalScrollDirection === 'forward'\n ? Math.max(1, overscanCountResolved)\n : 1;\n\n return [\n Math.max(0, startIndex - overscanBackward),\n Math.max(0, Math.min(columnCount - 1, stopIndex + overscanForward)),\n startIndex,\n stopIndex,\n ];\n }\n\n _getVerticalRangeToRender(): [number, number, number, number] {\n const {\n columnCount,\n overscanCount,\n overscanRowCount,\n overscanRowsCount,\n rowCount,\n } = this.props;\n const { isScrolling, verticalScrollDirection, scrollTop } = this.state;\n\n const overscanCountResolved: number =\n overscanRowCount || overscanRowsCount || overscanCount || 1;\n\n if (columnCount === 0 || rowCount === 0) {\n return [0, 0, 0, 0];\n }\n\n const startIndex = getRowStartIndexForOffset(\n this.props,\n scrollTop,\n this._instanceProps\n );\n const stopIndex = getRowStopIndexForStartIndex(\n this.props,\n startIndex,\n scrollTop,\n this._instanceProps\n );\n\n // Overscan by one item in each direction so that tab/focus works.\n // If there isn't at least one extra item, tab loops back around.\n const overscanBackward =\n !isScrolling || verticalScrollDirection === 'backward'\n ? Math.max(1, overscanCountResolved)\n : 1;\n const overscanForward =\n !isScrolling || verticalScrollDirection === 'forward'\n ? Math.max(1, overscanCountResolved)\n : 1;\n\n return [\n Math.max(0, startIndex - overscanBackward),\n Math.max(0, Math.min(rowCount - 1, stopIndex + overscanForward)),\n startIndex,\n stopIndex,\n ];\n }\n\n _onScroll = (event: ScrollEvent): void => {\n const {\n clientHeight,\n clientWidth,\n scrollLeft,\n scrollTop,\n scrollHeight,\n scrollWidth,\n } = event.currentTarget;\n this.setState(prevState => {\n if (\n prevState.scrollLeft === scrollLeft &&\n prevState.scrollTop === scrollTop\n ) {\n // Scroll position may have been updated by cDM/cDU,\n // In which case we don't need to trigger another render,\n // And we don't want to update state.isScrolling.\n return null;\n }\n\n const { direction } = this.props;\n\n // TRICKY According to the spec, scrollLeft should be negative for RTL aligned elements.\n // This is not the case for all browsers though (e.g. Chrome reports values as positive, measured relative to the left).\n // It's also easier for this component if we convert offsets to the same format as they would be in for ltr.\n // So the simplest solution is to determine which browser behavior we're dealing with, and convert based on it.\n let calculatedScrollLeft = scrollLeft;\n if (direction === 'rtl') {\n switch (getRTLOffsetType()) {\n case 'negative':\n calculatedScrollLeft = -scrollLeft;\n break;\n case 'positive-descending':\n calculatedScrollLeft = scrollWidth - clientWidth - scrollLeft;\n break;\n }\n }\n\n // Prevent Safari's elastic scrolling from causing visual shaking when scrolling past bounds.\n calculatedScrollLeft = Math.max(\n 0,\n Math.min(calculatedScrollLeft, scrollWidth - clientWidth)\n );\n const calculatedScrollTop = Math.max(\n 0,\n Math.min(scrollTop, scrollHeight - clientHeight)\n );\n\n return {\n isScrolling: true,\n horizontalScrollDirection:\n prevState.scrollLeft < scrollLeft ? 'forward' : 'backward',\n scrollLeft: calculatedScrollLeft,\n scrollTop: calculatedScrollTop,\n verticalScrollDirection:\n prevState.scrollTop < scrollTop ? 'forward' : 'backward',\n scrollUpdateWasRequested: false,\n };\n }, this._resetIsScrollingDebounced);\n };\n\n _outerRefSetter = (ref: any): void => {\n const { outerRef } = this.props;\n\n this._outerRef = ((ref: any): HTMLDivElement);\n\n if (typeof outerRef === 'function') {\n outerRef(ref);\n } else if (\n outerRef != null &&\n typeof outerRef === 'object' &&\n outerRef.hasOwnProperty('current')\n ) {\n outerRef.current = ref;\n }\n };\n\n _resetIsScrollingDebounced = () => {\n if (this._resetIsScrollingTimeoutId !== null) {\n cancelTimeout(this._resetIsScrollingTimeoutId);\n }\n\n this._resetIsScrollingTimeoutId = requestTimeout(\n this._resetIsScrolling,\n IS_SCROLLING_DEBOUNCE_INTERVAL\n );\n };\n\n _resetIsScrolling = () => {\n this._resetIsScrollingTimeoutId = null;\n\n this.setState({ isScrolling: false }, () => {\n // Clear style cache after state update has been committed.\n // This way we don't break pure sCU for items that don't use isScrolling param.\n this._getItemStyleCache(-1);\n });\n };\n };\n}\n\nconst validateSharedProps = (\n {\n children,\n direction,\n height,\n innerTagName,\n outerTagName,\n overscanColumnsCount,\n overscanCount,\n overscanRowsCount,\n width,\n }: Props,\n { instance }: State\n): void => {\n if (process.env.NODE_ENV !== 'production') {\n if (typeof overscanCount === 'number') {\n if (devWarningsOverscanCount && !devWarningsOverscanCount.has(instance)) {\n devWarningsOverscanCount.add(instance);\n console.warn(\n 'The overscanCount prop has been deprecated. ' +\n 'Please use the overscanColumnCount and overscanRowCount props instead.'\n );\n }\n }\n\n if (\n typeof overscanColumnsCount === 'number' ||\n typeof overscanRowsCount === 'number'\n ) {\n if (\n devWarningsOverscanRowsColumnsCount &&\n !devWarningsOverscanRowsColumnsCount.has(instance)\n ) {\n devWarningsOverscanRowsColumnsCount.add(instance);\n console.warn(\n 'The overscanColumnsCount and overscanRowsCount props have been deprecated. ' +\n 'Please use the overscanColumnCount and overscanRowCount props instead.'\n );\n }\n }\n\n if (innerTagName != null || outerTagName != null) {\n if (devWarningsTagName && !devWarningsTagName.has(instance)) {\n devWarningsTagName.add(instance);\n console.warn(\n 'The innerTagName and outerTagName props have been deprecated. ' +\n 'Please use the innerElementType and outerElementType props instead.'\n );\n }\n }\n\n if (children == null) {\n throw Error(\n 'An invalid \"children\" prop has been specified. ' +\n 'Value should be a React component. ' +\n `\"${children === null ? 'null' : typeof children}\" was specified.`\n );\n }\n\n switch (direction) {\n case 'ltr':\n case 'rtl':\n // Valid values\n break;\n default:\n throw Error(\n 'An invalid \"direction\" prop has been specified. ' +\n 'Value should be either \"ltr\" or \"rtl\". ' +\n `\"${direction}\" was specified.`\n );\n }\n\n if (typeof width !== 'number') {\n throw Error(\n 'An invalid \"width\" prop has been specified. ' +\n 'Grids must specify a number for width. ' +\n `\"${width === null ? 'null' : typeof width}\" was specified.`\n );\n }\n\n if (typeof height !== 'number') {\n throw Error(\n 'An invalid \"height\" prop has been specified. ' +\n 'Grids must specify a number for height. ' +\n `\"${height === null ? 'null' : typeof height}\" was specified.`\n );\n }\n }\n};\n","// @flow\n\nimport memoizeOne from 'memoize-one';\nimport { createElement, PureComponent } from 'react';\nimport { cancelTimeout, requestTimeout } from './timer';\nimport { getScrollbarSize, getRTLOffsetType } from './domHelpers';\n\nimport type { TimeoutID } from './timer';\n\nexport type ScrollToAlign = 'auto' | 'smart' | 'center' | 'start' | 'end';\n\ntype itemSize = number | ((index: number) => number);\n// TODO Deprecate directions \"horizontal\" and \"vertical\"\ntype Direction = 'ltr' | 'rtl' | 'horizontal' | 'vertical';\ntype Layout = 'horizontal' | 'vertical';\n\ntype RenderComponentProps = {|\n data: T,\n index: number,\n isScrolling?: boolean,\n style: Object,\n|};\ntype RenderComponent = React$ComponentType<$Shape>>;\n\ntype ScrollDirection = 'forward' | 'backward';\n\ntype onItemsRenderedCallback = ({\n overscanStartIndex: number,\n overscanStopIndex: number,\n visibleStartIndex: number,\n visibleStopIndex: number,\n}) => void;\ntype onScrollCallback = ({\n scrollDirection: ScrollDirection,\n scrollOffset: number,\n scrollUpdateWasRequested: boolean,\n}) => void;\n\ntype ScrollEvent = SyntheticEvent;\ntype ItemStyleCache = { [index: number]: Object };\n\ntype OuterProps = {|\n children: React$Node,\n className: string | void,\n onScroll: ScrollEvent => void,\n style: {\n [string]: mixed,\n },\n|};\n\ntype InnerProps = {|\n children: React$Node,\n style: {\n [string]: mixed,\n },\n|};\n\nexport type Props = {|\n children: RenderComponent,\n className?: string,\n direction: Direction,\n height: number | string,\n initialScrollOffset?: number,\n innerRef?: any,\n innerElementType?: string | React$AbstractComponent,\n innerTagName?: string, // deprecated\n itemCount: number,\n itemData: T,\n itemKey?: (index: number, data: T) => any,\n itemSize: itemSize,\n layout: Layout,\n onItemsRendered?: onItemsRenderedCallback,\n onScroll?: onScrollCallback,\n outerRef?: any,\n outerElementType?: string | React$AbstractComponent,\n outerTagName?: string, // deprecated\n overscanCount: number,\n style?: Object,\n useIsScrolling: boolean,\n width: number | string,\n|};\n\ntype State = {|\n instance: any,\n isScrolling: boolean,\n scrollDirection: ScrollDirection,\n scrollOffset: number,\n scrollUpdateWasRequested: boolean,\n|};\n\ntype GetItemOffset = (\n props: Props,\n index: number,\n instanceProps: any\n) => number;\ntype GetItemSize = (\n props: Props,\n index: number,\n instanceProps: any\n) => number;\ntype GetEstimatedTotalSize = (props: Props, instanceProps: any) => number;\ntype GetOffsetForIndexAndAlignment = (\n props: Props,\n index: number,\n align: ScrollToAlign,\n scrollOffset: number,\n instanceProps: any\n) => number;\ntype GetStartIndexForOffset = (\n props: Props,\n offset: number,\n instanceProps: any\n) => number;\ntype GetStopIndexForStartIndex = (\n props: Props,\n startIndex: number,\n scrollOffset: number,\n instanceProps: any\n) => number;\ntype InitInstanceProps = (props: Props, instance: any) => any;\ntype ValidateProps = (props: Props) => void;\n\nconst IS_SCROLLING_DEBOUNCE_INTERVAL = 150;\n\nconst defaultItemKey = (index: number, data: any) => index;\n\n// In DEV mode, this Set helps us only log a warning once per component instance.\n// This avoids spamming the console every time a render happens.\nlet devWarningsDirection = null;\nlet devWarningsTagName = null;\nif (process.env.NODE_ENV !== 'production') {\n if (typeof window !== 'undefined' && typeof window.WeakSet !== 'undefined') {\n devWarningsDirection = new WeakSet();\n devWarningsTagName = new WeakSet();\n }\n}\n\nexport default function createListComponent({\n getItemOffset,\n getEstimatedTotalSize,\n getItemSize,\n getOffsetForIndexAndAlignment,\n getStartIndexForOffset,\n getStopIndexForStartIndex,\n initInstanceProps,\n shouldResetStyleCacheOnItemSizeChange,\n validateProps,\n}: {|\n getItemOffset: GetItemOffset,\n getEstimatedTotalSize: GetEstimatedTotalSize,\n getItemSize: GetItemSize,\n getOffsetForIndexAndAlignment: GetOffsetForIndexAndAlignment,\n getStartIndexForOffset: GetStartIndexForOffset,\n getStopIndexForStartIndex: GetStopIndexForStartIndex,\n initInstanceProps: InitInstanceProps,\n shouldResetStyleCacheOnItemSizeChange: boolean,\n validateProps: ValidateProps,\n|}) {\n return class List extends PureComponent, State> {\n _instanceProps: any = initInstanceProps(this.props, this);\n _outerRef: ?HTMLDivElement;\n _resetIsScrollingTimeoutId: TimeoutID | null = null;\n\n static defaultProps = {\n direction: 'ltr',\n itemData: undefined,\n layout: 'vertical',\n overscanCount: 2,\n useIsScrolling: false,\n };\n\n state: State = {\n instance: this,\n isScrolling: false,\n scrollDirection: 'forward',\n scrollOffset:\n typeof this.props.initialScrollOffset === 'number'\n ? this.props.initialScrollOffset\n : 0,\n scrollUpdateWasRequested: false,\n };\n\n // Always use explicit constructor for React components.\n // It produces less code after transpilation. (#26)\n // eslint-disable-next-line no-useless-constructor\n constructor(props: Props) {\n super(props);\n }\n\n static getDerivedStateFromProps(\n nextProps: Props,\n prevState: State\n ): $Shape | null {\n validateSharedProps(nextProps, prevState);\n validateProps(nextProps);\n return null;\n }\n\n scrollTo(scrollOffset: number): void {\n scrollOffset = Math.max(0, scrollOffset);\n\n this.setState(prevState => {\n if (prevState.scrollOffset === scrollOffset) {\n return null;\n }\n return {\n scrollDirection:\n prevState.scrollOffset < scrollOffset ? 'forward' : 'backward',\n scrollOffset: scrollOffset,\n scrollUpdateWasRequested: true,\n };\n }, this._resetIsScrollingDebounced);\n }\n\n scrollToItem(index: number, align: ScrollToAlign = 'auto'): void {\n const { itemCount, layout } = this.props;\n const { scrollOffset } = this.state;\n\n index = Math.max(0, Math.min(index, itemCount - 1));\n\n // The scrollbar size should be considered when scrolling an item into view, to ensure it's fully visible.\n // But we only need to account for its size when it's actually visible.\n // This is an edge case for lists; normally they only scroll in the dominant direction.\n let scrollbarSize = 0;\n if (this._outerRef) {\n const outerRef = ((this._outerRef: any): HTMLElement);\n if (layout === 'vertical') {\n scrollbarSize =\n outerRef.scrollWidth > outerRef.clientWidth\n ? getScrollbarSize()\n : 0;\n } else {\n scrollbarSize =\n outerRef.scrollHeight > outerRef.clientHeight\n ? getScrollbarSize()\n : 0;\n }\n }\n\n this.scrollTo(\n getOffsetForIndexAndAlignment(\n this.props,\n index,\n align,\n scrollOffset,\n this._instanceProps,\n scrollbarSize\n )\n );\n }\n\n componentDidMount() {\n const { direction, initialScrollOffset, layout } = this.props;\n\n if (typeof initialScrollOffset === 'number' && this._outerRef != null) {\n const outerRef = ((this._outerRef: any): HTMLElement);\n // TODO Deprecate direction \"horizontal\"\n if (direction === 'horizontal' || layout === 'horizontal') {\n outerRef.scrollLeft = initialScrollOffset;\n } else {\n outerRef.scrollTop = initialScrollOffset;\n }\n }\n\n this._callPropsCallbacks();\n }\n\n componentDidUpdate() {\n const { direction, layout } = this.props;\n const { scrollOffset, scrollUpdateWasRequested } = this.state;\n\n if (scrollUpdateWasRequested && this._outerRef != null) {\n const outerRef = ((this._outerRef: any): HTMLElement);\n\n // TODO Deprecate direction \"horizontal\"\n if (direction === 'horizontal' || layout === 'horizontal') {\n if (direction === 'rtl') {\n // TRICKY According to the spec, scrollLeft should be negative for RTL aligned elements.\n // This is not the case for all browsers though (e.g. Chrome reports values as positive, measured relative to the left).\n // So we need to determine which browser behavior we're dealing with, and mimic it.\n switch (getRTLOffsetType()) {\n case 'negative':\n outerRef.scrollLeft = -scrollOffset;\n break;\n case 'positive-ascending':\n outerRef.scrollLeft = scrollOffset;\n break;\n default:\n const { clientWidth, scrollWidth } = outerRef;\n outerRef.scrollLeft = scrollWidth - clientWidth - scrollOffset;\n break;\n }\n } else {\n outerRef.scrollLeft = scrollOffset;\n }\n } else {\n outerRef.scrollTop = scrollOffset;\n }\n }\n\n this._callPropsCallbacks();\n }\n\n componentWillUnmount() {\n if (this._resetIsScrollingTimeoutId !== null) {\n cancelTimeout(this._resetIsScrollingTimeoutId);\n }\n }\n\n render() {\n const {\n children,\n className,\n direction,\n height,\n innerRef,\n innerElementType,\n innerTagName,\n itemCount,\n itemData,\n itemKey = defaultItemKey,\n layout,\n outerElementType,\n outerTagName,\n style,\n useIsScrolling,\n width,\n } = this.props;\n const { isScrolling } = this.state;\n\n // TODO Deprecate direction \"horizontal\"\n const isHorizontal =\n direction === 'horizontal' || layout === 'horizontal';\n\n const onScroll = isHorizontal\n ? this._onScrollHorizontal\n : this._onScrollVertical;\n\n const [startIndex, stopIndex] = this._getRangeToRender();\n\n const items = [];\n if (itemCount > 0) {\n for (let index = startIndex; index <= stopIndex; index++) {\n items.push(\n createElement(children, {\n data: itemData,\n key: itemKey(index, itemData),\n index,\n isScrolling: useIsScrolling ? isScrolling : undefined,\n style: this._getItemStyle(index),\n })\n );\n }\n }\n\n // Read this value AFTER items have been created,\n // So their actual sizes (if variable) are taken into consideration.\n const estimatedTotalSize = getEstimatedTotalSize(\n this.props,\n this._instanceProps\n );\n\n return createElement(\n outerElementType || outerTagName || 'div',\n {\n className,\n onScroll,\n ref: this._outerRefSetter,\n style: {\n position: 'relative',\n height,\n width,\n overflow: 'auto',\n WebkitOverflowScrolling: 'touch',\n willChange: 'transform',\n direction,\n ...style,\n },\n },\n createElement(innerElementType || innerTagName || 'div', {\n children: items,\n ref: innerRef,\n style: {\n height: isHorizontal ? '100%' : estimatedTotalSize,\n pointerEvents: isScrolling ? 'none' : undefined,\n width: isHorizontal ? estimatedTotalSize : '100%',\n },\n })\n );\n }\n\n _callOnItemsRendered: (\n overscanStartIndex: number,\n overscanStopIndex: number,\n visibleStartIndex: number,\n visibleStopIndex: number\n ) => void;\n _callOnItemsRendered = memoizeOne(\n (\n overscanStartIndex: number,\n overscanStopIndex: number,\n visibleStartIndex: number,\n visibleStopIndex: number\n ) =>\n ((this.props.onItemsRendered: any): onItemsRenderedCallback)({\n overscanStartIndex,\n overscanStopIndex,\n visibleStartIndex,\n visibleStopIndex,\n })\n );\n\n _callOnScroll: (\n scrollDirection: ScrollDirection,\n scrollOffset: number,\n scrollUpdateWasRequested: boolean\n ) => void;\n _callOnScroll = memoizeOne(\n (\n scrollDirection: ScrollDirection,\n scrollOffset: number,\n scrollUpdateWasRequested: boolean\n ) =>\n ((this.props.onScroll: any): onScrollCallback)({\n scrollDirection,\n scrollOffset,\n scrollUpdateWasRequested,\n })\n );\n\n _callPropsCallbacks() {\n if (typeof this.props.onItemsRendered === 'function') {\n const { itemCount } = this.props;\n if (itemCount > 0) {\n const [\n overscanStartIndex,\n overscanStopIndex,\n visibleStartIndex,\n visibleStopIndex,\n ] = this._getRangeToRender();\n this._callOnItemsRendered(\n overscanStartIndex,\n overscanStopIndex,\n visibleStartIndex,\n visibleStopIndex\n );\n }\n }\n\n if (typeof this.props.onScroll === 'function') {\n const {\n scrollDirection,\n scrollOffset,\n scrollUpdateWasRequested,\n } = this.state;\n this._callOnScroll(\n scrollDirection,\n scrollOffset,\n scrollUpdateWasRequested\n );\n }\n }\n\n // Lazily create and cache item styles while scrolling,\n // So that pure component sCU will prevent re-renders.\n // We maintain this cache, and pass a style prop rather than index,\n // So that List can clear cached styles and force item re-render if necessary.\n _getItemStyle: (index: number) => Object;\n _getItemStyle = (index: number): Object => {\n const { direction, itemSize, layout } = this.props;\n\n const itemStyleCache = this._getItemStyleCache(\n shouldResetStyleCacheOnItemSizeChange && itemSize,\n shouldResetStyleCacheOnItemSizeChange && layout,\n shouldResetStyleCacheOnItemSizeChange && direction\n );\n\n let style;\n if (itemStyleCache.hasOwnProperty(index)) {\n style = itemStyleCache[index];\n } else {\n const offset = getItemOffset(this.props, index, this._instanceProps);\n const size = getItemSize(this.props, index, this._instanceProps);\n\n // TODO Deprecate direction \"horizontal\"\n const isHorizontal =\n direction === 'horizontal' || layout === 'horizontal';\n\n const isRtl = direction === 'rtl';\n const offsetHorizontal = isHorizontal ? offset : 0;\n itemStyleCache[index] = style = {\n position: 'absolute',\n left: isRtl ? undefined : offsetHorizontal,\n right: isRtl ? offsetHorizontal : undefined,\n top: !isHorizontal ? offset : 0,\n height: !isHorizontal ? size : '100%',\n width: isHorizontal ? size : '100%',\n };\n }\n\n return style;\n };\n\n _getItemStyleCache: (_: any, __: any, ___: any) => ItemStyleCache;\n _getItemStyleCache = memoizeOne((_: any, __: any, ___: any) => ({}));\n\n _getRangeToRender(): [number, number, number, number] {\n const { itemCount, overscanCount } = this.props;\n const { isScrolling, scrollDirection, scrollOffset } = this.state;\n\n if (itemCount === 0) {\n return [0, 0, 0, 0];\n }\n\n const startIndex = getStartIndexForOffset(\n this.props,\n scrollOffset,\n this._instanceProps\n );\n const stopIndex = getStopIndexForStartIndex(\n this.props,\n startIndex,\n scrollOffset,\n this._instanceProps\n );\n\n // Overscan by one item in each direction so that tab/focus works.\n // If there isn't at least one extra item, tab loops back around.\n const overscanBackward =\n !isScrolling || scrollDirection === 'backward'\n ? Math.max(1, overscanCount)\n : 1;\n const overscanForward =\n !isScrolling || scrollDirection === 'forward'\n ? Math.max(1, overscanCount)\n : 1;\n\n return [\n Math.max(0, startIndex - overscanBackward),\n Math.max(0, Math.min(itemCount - 1, stopIndex + overscanForward)),\n startIndex,\n stopIndex,\n ];\n }\n\n _onScrollHorizontal = (event: ScrollEvent): void => {\n const { clientWidth, scrollLeft, scrollWidth } = event.currentTarget;\n this.setState(prevState => {\n if (prevState.scrollOffset === scrollLeft) {\n // Scroll position may have been updated by cDM/cDU,\n // In which case we don't need to trigger another render,\n // And we don't want to update state.isScrolling.\n return null;\n }\n\n const { direction } = this.props;\n\n let scrollOffset = scrollLeft;\n if (direction === 'rtl') {\n // TRICKY According to the spec, scrollLeft should be negative for RTL aligned elements.\n // This is not the case for all browsers though (e.g. Chrome reports values as positive, measured relative to the left).\n // It's also easier for this component if we convert offsets to the same format as they would be in for ltr.\n // So the simplest solution is to determine which browser behavior we're dealing with, and convert based on it.\n switch (getRTLOffsetType()) {\n case 'negative':\n scrollOffset = -scrollLeft;\n break;\n case 'positive-descending':\n scrollOffset = scrollWidth - clientWidth - scrollLeft;\n break;\n }\n }\n\n // Prevent Safari's elastic scrolling from causing visual shaking when scrolling past bounds.\n scrollOffset = Math.max(\n 0,\n Math.min(scrollOffset, scrollWidth - clientWidth)\n );\n\n return {\n isScrolling: true,\n scrollDirection:\n prevState.scrollOffset < scrollOffset ? 'forward' : 'backward',\n scrollOffset,\n scrollUpdateWasRequested: false,\n };\n }, this._resetIsScrollingDebounced);\n };\n\n _onScrollVertical = (event: ScrollEvent): void => {\n const { clientHeight, scrollHeight, scrollTop } = event.currentTarget;\n this.setState(prevState => {\n if (prevState.scrollOffset === scrollTop) {\n // Scroll position may have been updated by cDM/cDU,\n // In which case we don't need to trigger another render,\n // And we don't want to update state.isScrolling.\n return null;\n }\n\n // Prevent Safari's elastic scrolling from causing visual shaking when scrolling past bounds.\n const scrollOffset = Math.max(\n 0,\n Math.min(scrollTop, scrollHeight - clientHeight)\n );\n\n return {\n isScrolling: true,\n scrollDirection:\n prevState.scrollOffset < scrollOffset ? 'forward' : 'backward',\n scrollOffset,\n scrollUpdateWasRequested: false,\n };\n }, this._resetIsScrollingDebounced);\n };\n\n _outerRefSetter = (ref: any): void => {\n const { outerRef } = this.props;\n\n this._outerRef = ((ref: any): HTMLDivElement);\n\n if (typeof outerRef === 'function') {\n outerRef(ref);\n } else if (\n outerRef != null &&\n typeof outerRef === 'object' &&\n outerRef.hasOwnProperty('current')\n ) {\n outerRef.current = ref;\n }\n };\n\n _resetIsScrollingDebounced = () => {\n if (this._resetIsScrollingTimeoutId !== null) {\n cancelTimeout(this._resetIsScrollingTimeoutId);\n }\n\n this._resetIsScrollingTimeoutId = requestTimeout(\n this._resetIsScrolling,\n IS_SCROLLING_DEBOUNCE_INTERVAL\n );\n };\n\n _resetIsScrolling = () => {\n this._resetIsScrollingTimeoutId = null;\n\n this.setState({ isScrolling: false }, () => {\n // Clear style cache after state update has been committed.\n // This way we don't break pure sCU for items that don't use isScrolling param.\n this._getItemStyleCache(-1, null);\n });\n };\n };\n}\n\n// NOTE: I considered further wrapping individual items with a pure ListItem component.\n// This would avoid ever calling the render function for the same index more than once,\n// But it would also add the overhead of a lot of components/fibers.\n// I assume people already do this (render function returning a class component),\n// So my doing it would just unnecessarily double the wrappers.\n\nconst validateSharedProps = (\n {\n children,\n direction,\n height,\n layout,\n innerTagName,\n outerTagName,\n width,\n }: Props,\n { instance }: State\n): void => {\n if (process.env.NODE_ENV !== 'production') {\n if (innerTagName != null || outerTagName != null) {\n if (devWarningsTagName && !devWarningsTagName.has(instance)) {\n devWarningsTagName.add(instance);\n console.warn(\n 'The innerTagName and outerTagName props have been deprecated. ' +\n 'Please use the innerElementType and outerElementType props instead.'\n );\n }\n }\n\n // TODO Deprecate direction \"horizontal\"\n const isHorizontal = direction === 'horizontal' || layout === 'horizontal';\n\n switch (direction) {\n case 'horizontal':\n case 'vertical':\n if (devWarningsDirection && !devWarningsDirection.has(instance)) {\n devWarningsDirection.add(instance);\n console.warn(\n 'The direction prop should be either \"ltr\" (default) or \"rtl\". ' +\n 'Please use the layout prop to specify \"vertical\" (default) or \"horizontal\" orientation.'\n );\n }\n break;\n case 'ltr':\n case 'rtl':\n // Valid values\n break;\n default:\n throw Error(\n 'An invalid \"direction\" prop has been specified. ' +\n 'Value should be either \"ltr\" or \"rtl\". ' +\n `\"${direction}\" was specified.`\n );\n }\n\n switch (layout) {\n case 'horizontal':\n case 'vertical':\n // Valid values\n break;\n default:\n throw Error(\n 'An invalid \"layout\" prop has been specified. ' +\n 'Value should be either \"horizontal\" or \"vertical\". ' +\n `\"${layout}\" was specified.`\n );\n }\n\n if (children == null) {\n throw Error(\n 'An invalid \"children\" prop has been specified. ' +\n 'Value should be a React component. ' +\n `\"${children === null ? 'null' : typeof children}\" was specified.`\n );\n }\n\n if (isHorizontal && typeof width !== 'number') {\n throw Error(\n 'An invalid \"width\" prop has been specified. ' +\n 'Horizontal lists must specify a number for width. ' +\n `\"${width === null ? 'null' : typeof width}\" was specified.`\n );\n } else if (!isHorizontal && typeof height !== 'number') {\n throw Error(\n 'An invalid \"height\" prop has been specified. ' +\n 'Vertical lists must specify a number for height. ' +\n `\"${height === null ? 'null' : typeof height}\" was specified.`\n );\n }\n }\n};\n","// @flow\n\nimport createListComponent from './createListComponent';\n\nimport type { Props, ScrollToAlign } from './createListComponent';\n\nconst DEFAULT_ESTIMATED_ITEM_SIZE = 50;\n\ntype VariableSizeProps = {|\n estimatedItemSize: number,\n ...Props,\n|};\n\ntype itemSizeGetter = (index: number) => number;\n\ntype ItemMetadata = {|\n offset: number,\n size: number,\n|};\ntype InstanceProps = {|\n itemMetadataMap: { [index: number]: ItemMetadata },\n estimatedItemSize: number,\n lastMeasuredIndex: number,\n|};\n\nconst getItemMetadata = (\n props: Props,\n index: number,\n instanceProps: InstanceProps\n): ItemMetadata => {\n const { itemSize } = ((props: any): VariableSizeProps);\n const { itemMetadataMap, lastMeasuredIndex } = instanceProps;\n\n if (index > lastMeasuredIndex) {\n let offset = 0;\n if (lastMeasuredIndex >= 0) {\n const itemMetadata = itemMetadataMap[lastMeasuredIndex];\n offset = itemMetadata.offset + itemMetadata.size;\n }\n\n for (let i = lastMeasuredIndex + 1; i <= index; i++) {\n let size = ((itemSize: any): itemSizeGetter)(i);\n\n itemMetadataMap[i] = {\n offset,\n size,\n };\n\n offset += size;\n }\n\n instanceProps.lastMeasuredIndex = index;\n }\n\n return itemMetadataMap[index];\n};\n\nconst findNearestItem = (\n props: Props,\n instanceProps: InstanceProps,\n offset: number\n) => {\n const { itemMetadataMap, lastMeasuredIndex } = instanceProps;\n\n const lastMeasuredItemOffset =\n lastMeasuredIndex > 0 ? itemMetadataMap[lastMeasuredIndex].offset : 0;\n\n if (lastMeasuredItemOffset >= offset) {\n // If we've already measured items within this range just use a binary search as it's faster.\n return findNearestItemBinarySearch(\n props,\n instanceProps,\n lastMeasuredIndex,\n 0,\n offset\n );\n } else {\n // If we haven't yet measured this high, fallback to an exponential search with an inner binary search.\n // The exponential search avoids pre-computing sizes for the full set of items as a binary search would.\n // The overall complexity for this approach is O(log n).\n return findNearestItemExponentialSearch(\n props,\n instanceProps,\n Math.max(0, lastMeasuredIndex),\n offset\n );\n }\n};\n\nconst findNearestItemBinarySearch = (\n props: Props,\n instanceProps: InstanceProps,\n high: number,\n low: number,\n offset: number\n): number => {\n while (low <= high) {\n const middle = low + Math.floor((high - low) / 2);\n const currentOffset = getItemMetadata(props, middle, instanceProps).offset;\n\n if (currentOffset === offset) {\n return middle;\n } else if (currentOffset < offset) {\n low = middle + 1;\n } else if (currentOffset > offset) {\n high = middle - 1;\n }\n }\n\n if (low > 0) {\n return low - 1;\n } else {\n return 0;\n }\n};\n\nconst findNearestItemExponentialSearch = (\n props: Props,\n instanceProps: InstanceProps,\n index: number,\n offset: number\n): number => {\n const { itemCount } = props;\n let interval = 1;\n\n while (\n index < itemCount &&\n getItemMetadata(props, index, instanceProps).offset < offset\n ) {\n index += interval;\n interval *= 2;\n }\n\n return findNearestItemBinarySearch(\n props,\n instanceProps,\n Math.min(index, itemCount - 1),\n Math.floor(index / 2),\n offset\n );\n};\n\nconst getEstimatedTotalSize = (\n { itemCount }: Props,\n { itemMetadataMap, estimatedItemSize, lastMeasuredIndex }: InstanceProps\n) => {\n let totalSizeOfMeasuredItems = 0;\n\n // Edge case check for when the number of items decreases while a scroll is in progress.\n // https://github.com/bvaughn/react-window/pull/138\n if (lastMeasuredIndex >= itemCount) {\n lastMeasuredIndex = itemCount - 1;\n }\n\n if (lastMeasuredIndex >= 0) {\n const itemMetadata = itemMetadataMap[lastMeasuredIndex];\n totalSizeOfMeasuredItems = itemMetadata.offset + itemMetadata.size;\n }\n\n const numUnmeasuredItems = itemCount - lastMeasuredIndex - 1;\n const totalSizeOfUnmeasuredItems = numUnmeasuredItems * estimatedItemSize;\n\n return totalSizeOfMeasuredItems + totalSizeOfUnmeasuredItems;\n};\n\nconst VariableSizeList = createListComponent({\n getItemOffset: (\n props: Props,\n index: number,\n instanceProps: InstanceProps\n ): number => getItemMetadata(props, index, instanceProps).offset,\n\n getItemSize: (\n props: Props,\n index: number,\n instanceProps: InstanceProps\n ): number => instanceProps.itemMetadataMap[index].size,\n\n getEstimatedTotalSize,\n\n getOffsetForIndexAndAlignment: (\n props: Props,\n index: number,\n align: ScrollToAlign,\n scrollOffset: number,\n instanceProps: InstanceProps,\n scrollbarSize: number\n ): number => {\n const { direction, height, layout, width } = props;\n\n // TODO Deprecate direction \"horizontal\"\n const isHorizontal = direction === 'horizontal' || layout === 'horizontal';\n const size = (((isHorizontal ? width : height): any): number);\n const itemMetadata = getItemMetadata(props, index, instanceProps);\n\n // Get estimated total size after ItemMetadata is computed,\n // To ensure it reflects actual measurements instead of just estimates.\n const estimatedTotalSize = getEstimatedTotalSize(props, instanceProps);\n\n const maxOffset = Math.max(\n 0,\n Math.min(estimatedTotalSize - size, itemMetadata.offset)\n );\n const minOffset = Math.max(\n 0,\n itemMetadata.offset - size + itemMetadata.size + scrollbarSize\n );\n\n if (align === 'smart') {\n if (\n scrollOffset >= minOffset - size &&\n scrollOffset <= maxOffset + size\n ) {\n align = 'auto';\n } else {\n align = 'center';\n }\n }\n\n switch (align) {\n case 'start':\n return maxOffset;\n case 'end':\n return minOffset;\n case 'center':\n return Math.round(minOffset + (maxOffset - minOffset) / 2);\n case 'auto':\n default:\n if (scrollOffset >= minOffset && scrollOffset <= maxOffset) {\n return scrollOffset;\n } else if (scrollOffset < minOffset) {\n return minOffset;\n } else {\n return maxOffset;\n }\n }\n },\n\n getStartIndexForOffset: (\n props: Props,\n offset: number,\n instanceProps: InstanceProps\n ): number => findNearestItem(props, instanceProps, offset),\n\n getStopIndexForStartIndex: (\n props: Props,\n startIndex: number,\n scrollOffset: number,\n instanceProps: InstanceProps\n ): number => {\n const { direction, height, itemCount, layout, width } = props;\n\n // TODO Deprecate direction \"horizontal\"\n const isHorizontal = direction === 'horizontal' || layout === 'horizontal';\n const size = (((isHorizontal ? width : height): any): number);\n const itemMetadata = getItemMetadata(props, startIndex, instanceProps);\n const maxOffset = scrollOffset + size;\n\n let offset = itemMetadata.offset + itemMetadata.size;\n let stopIndex = startIndex;\n\n while (stopIndex < itemCount - 1 && offset < maxOffset) {\n stopIndex++;\n offset += getItemMetadata(props, stopIndex, instanceProps).size;\n }\n\n return stopIndex;\n },\n\n initInstanceProps(props: Props, instance: any): InstanceProps {\n const { estimatedItemSize } = ((props: any): VariableSizeProps);\n\n const instanceProps = {\n itemMetadataMap: {},\n estimatedItemSize: estimatedItemSize || DEFAULT_ESTIMATED_ITEM_SIZE,\n lastMeasuredIndex: -1,\n };\n\n instance.resetAfterIndex = (\n index: number,\n shouldForceUpdate?: boolean = true\n ) => {\n instanceProps.lastMeasuredIndex = Math.min(\n instanceProps.lastMeasuredIndex,\n index - 1\n );\n\n // We could potentially optimize further by only evicting styles after this index,\n // But since styles are only cached while scrolling is in progress-\n // It seems an unnecessary optimization.\n // It's unlikely that resetAfterIndex() will be called while a user is scrolling.\n instance._getItemStyleCache(-1);\n\n if (shouldForceUpdate) {\n instance.forceUpdate();\n }\n };\n\n return instanceProps;\n },\n\n shouldResetStyleCacheOnItemSizeChange: false,\n\n validateProps: ({ itemSize }: Props): void => {\n if (process.env.NODE_ENV !== 'production') {\n if (typeof itemSize !== 'function') {\n throw Error(\n 'An invalid \"itemSize\" prop has been specified. ' +\n 'Value should be a function. ' +\n `\"${itemSize === null ? 'null' : typeof itemSize}\" was specified.`\n );\n }\n }\n },\n});\n\nexport default VariableSizeList;\n","import _objectWithoutPropertiesLoose from \"@babel/runtime/helpers/objectWithoutPropertiesLoose\";\nimport _extends from \"@babel/runtime/helpers/extends\";\nimport _assertThisInitialized from \"@babel/runtime/helpers/assertThisInitialized\";\nimport _inheritsLoose from \"@babel/runtime/helpers/inheritsLoose\";\nimport React from 'react';\nimport { VariableSizeList } from 'react-window';\nimport Tree, { createTreeComputer } from './Tree';\nimport { createBasicRecord, getIdByIndex } from './utils';\nvar computeTree = createTreeComputer({\n createRecord: function createRecord(data, _ref, parent, previousRecord) {\n var recomputeTree = _ref.recomputeTree,\n resetAfterId = _ref.resetAfterId;\n var record = createBasicRecord({\n data: data,\n height: previousRecord ? previousRecord.public.height : data.defaultHeight,\n isOpen: previousRecord ? previousRecord.public.isOpen : data.isOpenByDefault,\n resize: function resize(height, shouldForceUpdate) {\n record.public.height = height;\n resetAfterId(record.public.data.id, shouldForceUpdate);\n },\n setOpen: function setOpen(state) {\n var _recomputeTree;\n\n return recomputeTree((_recomputeTree = {}, _recomputeTree[data.id] = state, _recomputeTree));\n }\n }, parent);\n return record;\n }\n});\nexport var VariableSizeTree = /*#__PURE__*/function (_Tree) {\n _inheritsLoose(VariableSizeTree, _Tree);\n\n function VariableSizeTree(props, context) {\n var _this;\n\n _this = _Tree.call(this, props, context) || this;\n _this.getItemSize = _this.getItemSize.bind(_assertThisInitialized(_this));\n _this.state = _extends({}, _this.state, {\n computeTree: computeTree,\n resetAfterId: _this.resetAfterId.bind(_assertThisInitialized(_this))\n });\n return _this;\n }\n\n var _proto = VariableSizeTree.prototype;\n\n _proto.resetAfterId = function resetAfterId(id, shouldForceUpdate) {\n var _list$current;\n\n if (shouldForceUpdate === void 0) {\n shouldForceUpdate = false;\n }\n\n var _this$state = this.state,\n list = _this$state.list,\n order = _this$state.order;\n (_list$current = list.current) == null ? void 0 : _list$current.resetAfterIndex(order.indexOf(id), shouldForceUpdate);\n };\n\n _proto.recomputeTree = function recomputeTree(state) {\n var _this2 = this;\n\n return _Tree.prototype.recomputeTree.call(this, state).then(function () {\n var _this2$state$list$cur;\n\n (_this2$state$list$cur = _this2.state.list.current) == null ? void 0 : _this2$state$list$cur.resetAfterIndex(0, true);\n });\n };\n\n _proto.render = function render() {\n var _this$props = this.props,\n children = _this$props.children,\n placeholder = _this$props.placeholder,\n itemSize = _this$props.itemSize,\n rowComponent = _this$props.rowComponent,\n treeWalker = _this$props.treeWalker,\n rest = _objectWithoutPropertiesLoose(_this$props, [\"children\", \"placeholder\", \"itemSize\", \"rowComponent\", \"treeWalker\"]);\n\n var _this$state2 = this.state,\n attachRefs = _this$state2.attachRefs,\n order = _this$state2.order;\n return placeholder && order.length === 0 ? placeholder : /*#__PURE__*/React.createElement(VariableSizeList, Object.assign({}, rest, {\n itemCount: order.length,\n itemData: this.getItemData() // eslint-disable-next-line @typescript-eslint/unbound-method\n ,\n itemKey: getIdByIndex // eslint-disable-next-line @typescript-eslint/unbound-method\n ,\n itemSize: itemSize != null ? itemSize : this.getItemSize // eslint-disable-next-line @typescript-eslint/unbound-method\n ,\n ref: attachRefs\n }), rowComponent);\n };\n\n _proto.getItemSize = function getItemSize(index) {\n return this.getRecordData(index).height;\n };\n\n return 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vview.dynamicBlocks.contentBlocks[0]?.offsetPx\n const warnings = [] as { message: string; effect: string }[]\n ctx.lineWidth = lineWidth\n\n // we operate on snapshots of these attributes of the hview/vview because\n // it is significantly faster than accessing the mobx objects\n const { bpPerPx: hBpPerPx } = hview\n const { bpPerPx: vBpPerPx } = vview\n\n function clampWithWarnX(\n num: number,\n min: number,\n max: number,\n feature: Feature,\n ) {\n const strand = feature.get('strand') || 1\n if (strand === -1) {\n ;[max, min] = [min, max]\n }\n if (num < min - fudgeFactor) {\n let start = feature.get('start')\n let end = feature.get('end')\n const refName = feature.get('refName')\n if (strand === -1) {\n ;[end, start] = [start, end]\n }\n\n warnings.push({\n message: `feature at (X ${refName}:${start}-${end}) ${r} ${lt}`,\n effect: 'clipped the feature',\n })\n return min\n }\n if (num > max + fudgeFactor) {\n const strand = feature.get('strand') || 1\n const start = strand === 1 ? feature.get('start') : feature.get('end')\n const end = strand === 1 ? feature.get('end') : feature.get('start')\n const refName = feature.get('refName')\n\n warnings.push({\n message: `feature at (X ${refName}:${start}-${end}) ${r} ${gt}`,\n effect: 'clipped the feature',\n })\n return max\n }\n return num\n }\n\n function clampWithWarnY(\n num: number,\n min: number,\n max: number,\n feature: Feature,\n ) {\n if (num < min - fudgeFactor) {\n const mate = feature.get('mate')\n const { refName, start, end } = mate\n warnings.push({\n message: `feature at (Y ${refName}:${start}-${end}) ${r} ${lt}`,\n effect: 'clipped the feature',\n })\n return min\n }\n if (num > max + fudgeFactor) {\n const mate = feature.get('mate')\n const { refName, start, end } = mate\n\n warnings.push({\n message: `feature at (Y ${refName}:${start}-${end}) ${r} ${gt}`,\n effect: 'clipped the feature',\n })\n return max\n }\n return num\n }\n\n const hsnap = {\n ...getSnapshot(hview),\n staticBlocks: hview.staticBlocks,\n width: hview.width,\n }\n const vsnap = {\n ...getSnapshot(vview),\n staticBlocks: vview.staticBlocks,\n width: vview.width,\n }\n const t = createJBrowseTheme(theme)\n for (const feature of hview.features || []) {\n const strand = feature.get('strand') || 1\n const start = strand === 1 ? feature.get('start') : feature.get('end')\n const end = strand === 1 ? feature.get('end') : feature.get('start')\n const refName = feature.get('refName')\n const mate = feature.get('mate')\n const mateRef = mate.refName\n\n let r = 'black'\n if (colorBy === 'identity') {\n const identity = feature.get('identity')\n for (let i = 0; i < thresholds.length; i++) {\n if (identity > +thresholds[i]) {\n r = palette[i] || 'black'\n break\n }\n }\n } else if (colorBy === 'meanQueryIdentity') {\n r = `hsl(${feature.get('meanScore') * 200},100%,40%)`\n } else if (colorBy === 'mappingQuality') {\n r = `hsl(${feature.get('mappingQual')},100%,40%)`\n } else if (colorBy === 'strand') {\n r = strand === -1 ? negColor : posColor\n } else if (colorBy === 'default') {\n r = isCallback\n ? readConfObject(config, 'color', { feature })\n : color === '#f0f'\n ? t.palette.text.primary\n : color\n }\n ctx.fillStyle = r\n ctx.strokeStyle = r\n\n const b10 = bpToPx({ self: hsnap, refName, coord: start })\n const b20 = bpToPx({ self: hsnap, refName, coord: end })\n const e10 = bpToPx({ self: vsnap, refName: mateRef, coord: mate.start })\n const e20 = bpToPx({ self: vsnap, refName: mateRef, coord: mate.end })\n if (\n b10 !== undefined &&\n b20 !== undefined &&\n e10 !== undefined &&\n e20 !== undefined\n ) {\n const b1 = b10.offsetPx - db1!\n const b2 = b20.offsetPx - db1!\n const e1 = e10.offsetPx - db2!\n const e2 = e20.offsetPx - db2!\n if (Math.abs(b1 - b2) <= 4 && Math.abs(e1 - e2) <= 4) {\n drawCir(ctx, b1, height - e1, lineWidth)\n } else {\n let currX = b1\n let currY = e1\n const cigar = feature.get('CIGAR')\n if (drawCigar && cigar) {\n const cigarOps = parseCigar(cigar)\n\n ctx.beginPath()\n ctx.moveTo(currX, height - currY)\n\n let lastDrawnX = currX\n let lastDrawnY = currX\n for (let i = 0; i < cigarOps.length; i += 2) {\n const val = +cigarOps[i]!\n const op = cigarOps[i + 1]!\n if (op === 'M' || op === '=' || op === 'X') {\n currX += (val / hBpPerPx) * strand\n currY += val / vBpPerPx\n } else if (op === 'D' || op === 'N') {\n currX += (val / hBpPerPx) * strand\n } else if (op === 'I') {\n currY += val / vBpPerPx\n }\n currX = clampWithWarnX(currX, b1, b2, feature)\n currY = clampWithWarnY(currY, e1, e2, feature)\n\n // only draw a line segment if it is bigger than 0.5px\n if (\n Math.abs(currX - lastDrawnX) > 0.5 ||\n Math.abs(currY - lastDrawnY) > 0.5\n ) {\n ctx.lineTo(currX, height - currY)\n lastDrawnX = currX\n lastDrawnY = currY\n }\n }\n\n ctx.stroke()\n } else {\n ctx.beginPath()\n ctx.moveTo(b1, height - e1)\n ctx.lineTo(b2, height - e2)\n ctx.stroke()\n }\n }\n } else {\n if (warnings.length <= 5) {\n if (b10 === undefined || b20 === 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GridBookmarkModel } from '../../model'\n\nconst DeleteBookmarksDialog = observer(function ({\n onClose,\n model,\n}: {\n onClose: () => void\n model: GridBookmarkModel\n}) {\n const { selectedBookmarks } = model\n const deleteAll = selectedBookmarks.length === 0\n\n return (\n \n )\n})\n\nexport default DeleteBookmarksDialog\n"],"names":["observer","onClose","model","selectedBookmarks","deleteAll","length","React","Dialog","open","title","DialogContent","Alert","severity","DialogActions","Button","variant","color","onClick","clearAllBookmarks","clearSelectedBookmarks"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/1822.2cbe112a.chunk.js --- a/x/static/js/1822.2cbe112a.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[1822],{31822:(e,a,t)=>{t.r(a),t.d(a,{default:()=>u});var 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{\n BaseFeatureDataAdapter,\n BaseOptions,\n} from '@jbrowse/core/data_adapters/BaseAdapter'\nimport { AugmentedRegion as Region } from '@jbrowse/core/util/types'\nimport { ObservableCreate } from '@jbrowse/core/util/rxjs'\nimport { SimpleFeature, Feature, min, max } from '@jbrowse/core/util'\nimport { merge } from 'rxjs'\nimport { map } from 'rxjs/operators'\n\ninterface WiggleOptions extends BaseOptions {\n resolution?: number\n}\n\nfunction getFilename(uri: string) {\n const filename = uri.slice(uri.lastIndexOf('/') + 1)\n return filename.slice(0, filename.lastIndexOf('.'))\n}\n\ninterface AdapterEntry {\n dataAdapter: BaseFeatureDataAdapter\n source: string\n [key: string]: unknown\n}\n\ntype MaybeStats = { scoreMin: number; scoreMax: number } | undefined\n\nexport default class MultiWiggleAdapter extends BaseFeatureDataAdapter {\n public static capabilities = [\n 'hasResolution',\n 'hasLocalStats',\n 'hasGlobalStats',\n ]\n\n public async getAdapters(): Promise {\n const getSubAdapter = this.getSubAdapter\n if (!getSubAdapter) {\n throw new Error('no getSubAdapter available')\n }\n let subConfs = this.getConf('subadapters')\n if (!subConfs?.length) {\n const entries = this.getConf('bigWigs') as string[]\n subConfs = entries.map(entry => ({\n type: 'BigWigAdapter',\n source: getFilename(entry),\n bigWigLocation: {\n uri: entry,\n },\n }))\n }\n\n return Promise.all(\n subConfs.map(async (conf: any) => {\n const dataAdapter = (await getSubAdapter(conf))\n .dataAdapter as BaseFeatureDataAdapter\n return {\n source: conf.name || dataAdapter.id,\n ...conf,\n dataAdapter,\n }\n }),\n )\n }\n\n // note: can't really have dis-agreeing refNames\n public async getRefNames(opts?: BaseOptions) {\n const adapters = await this.getAdapters()\n const allNames = await Promise.all(\n adapters.map(a => a.dataAdapter.getRefNames(opts)),\n )\n return [...new Set(allNames.flat())]\n }\n\n public async getGlobalStats(opts?: BaseOptions) {\n const adapters = await this.getAdapters()\n const stats = (\n (await Promise.all(\n // @ts-expect-error\n adapters.map(adp => adp.dataAdapter.getGlobalStats?.(opts)),\n )) as MaybeStats[]\n ).filter(f => !!f)\n const scoreMin = min(stats.map(s => s.scoreMin))\n const scoreMax = max(stats.map(s => s.scoreMax))\n return { scoreMin, scoreMax }\n }\n\n public getFeatures(region: Region, opts: WiggleOptions = {}) {\n return ObservableCreate(async observer => {\n const adapters = await this.getAdapters()\n merge(\n ...adapters.map(adp =>\n adp.dataAdapter.getFeatures(region, opts).pipe(\n map(p =>\n // add source field if it does not exist\n p.get('source')\n ? p\n : new SimpleFeature({\n ...p.toJSON(),\n uniqueId: `${adp.source}-${p.id()}`,\n source: adp.source,\n }),\n ),\n ),\n ),\n ).subscribe(observer)\n }, opts.signal)\n }\n\n // always render bigwig instead of calculating a feature density for it\n async getMultiRegionFeatureDensityStats(_regions: Region[]) {\n return { featureDensity: 0 }\n }\n\n // in another adapter type, this could be dynamic depending on region or\n // something, but it is static for this particular multi-wiggle adapter type\n async getSources() {\n const adapters = await this.getAdapters()\n return adapters.map(({ dataAdapter, source, name, ...rest }) => ({\n name: source,\n __name: name,\n ...rest,\n }))\n }\n\n public freeResources(): void 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React, { useState } from 'react'\nimport { Button, Paper, TextField } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport {\n getSession,\n isElectron,\n isSessionModelWithWidgets,\n isSessionWithAddTracks,\n} from '@jbrowse/core/util'\nimport { storeBlobLocation } from '@jbrowse/core/util/tracks'\nimport { AddTrackModel } from '@jbrowse/plugin-data-management'\n\nconst useStyles = makeStyles()(theme => ({\n textbox: {\n width: '100%',\n },\n paper: {\n margin: theme.spacing(),\n padding: theme.spacing(),\n },\n submit: {\n marginTop: 25,\n marginBottom: 100,\n display: 'block',\n },\n}))\n\nexport default function MultiWiggleWidget({ model }: { model: AddTrackModel }) {\n const { classes } = useStyles()\n const [val, setVal] = useState('')\n const [trackName, setTrackName] = useState(`MultiWiggle${+Date.now()}`)\n return (\n \n

Enter list of URLs for bigwig files in the textbox
\n Or, use the button below the text box to select files from your\n computer\n

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Additional notes:

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(obj) => (Object.getPrototypeOf(obj)) : (obj) => (obj.__proto__);\nvar leafPrototypes;\n// create a fake namespace object\n// mode & 1: value is a module id, require it\n// mode & 2: merge all properties of value into the ns\n// mode & 4: return value when already ns object\n// mode & 16: return value when it's Promise-like\n// mode & 8|1: behave like require\n__webpack_require__.t = function(value, mode) {\n\tif(mode & 1) value = this(value);\n\tif(mode & 8) return value;\n\tif(typeof value === 'object' && value) {\n\t\tif((mode & 4) && value.__esModule) return value;\n\t\tif((mode & 16) && typeof value.then === 'function') return value;\n\t}\n\tvar ns = Object.create(null);\n\t__webpack_require__.r(ns);\n\tvar def = {};\n\tleafPrototypes = leafPrototypes || [null, getProto({}), getProto([]), getProto(getProto)];\n\tfor(var current = mode & 2 && value; typeof current == 'object' && !~leafPrototypes.indexOf(current); current = getProto(current)) {\n\t\tObject.getOwnPropertyNames(current).forEach((key) => (def[key] = () => (value[key])));\n\t}\n\tdef['default'] = () => (value);\n\t__webpack_require__.d(ns, def);\n\treturn ns;\n};","var next = __webpack_require__.x;\n__webpack_require__.x = () => {\n\treturn Promise.all([5255,3301,6837].map(__webpack_require__.e, __webpack_require__)).then(next);\n};","import { SnapshotIn } from 'mobx-state-tree'\nimport PluginManager from '../PluginManager'\nimport { AnyConfigurationSchemaType } from '../configuration'\nimport { AnyDataAdapter } from './BaseAdapter'\nimport idMaker from '../util/idMaker'\n\ntype ConfigSnap = SnapshotIn\n\nexport function adapterConfigCacheKey(conf: Record = {}) {\n return `${idMaker(conf)}`\n}\n\ninterface AdapterCacheEntry {\n dataAdapter: AnyDataAdapter\n sessionIds: Set\n}\n\nlet adapterCache: Record = {}\n\n/**\n * instantiate a data adapter, or return an already-instantiated one if we have\n * one with the same configuration\n *\n * @param pluginManager\n *\n * @param sessionId - session ID of the associated worker session. used for\n * reference counting\n *\n * @param adapterConfigSnapshot - plain-JS configuration snapshot for the\n * adapter\n */\nexport async function getAdapter(\n pluginManager: PluginManager,\n sessionId: string,\n adapterConfigSnapshot: SnapshotIn,\n): Promise {\n // cache the adapter object\n const cacheKey = adapterConfigCacheKey(adapterConfigSnapshot)\n if (!adapterCache[cacheKey]) {\n const adapterType = adapterConfigSnapshot?.type\n\n if (!adapterType) {\n throw new Error(\n `could not determine adapter type from adapter config snapshot ${JSON.stringify(\n adapterConfigSnapshot,\n )}`,\n )\n }\n const dataAdapterType = pluginManager.getAdapterType(adapterType)\n if (!dataAdapterType) {\n throw new Error(`unknown data adapter type ${adapterType}`)\n }\n\n // instantiate the data adapter's config schema so it gets its defaults,\n // callbacks, etc\n const adapterConfig = dataAdapterType.configSchema.create(\n adapterConfigSnapshot,\n { pluginManager },\n )\n\n const getSubAdapter = getAdapter.bind(null, pluginManager, sessionId)\n const CLASS = await dataAdapterType.getAdapterClass()\n const dataAdapter = new CLASS(adapterConfig, getSubAdapter, pluginManager)\n\n // store it in our cache\n adapterCache[cacheKey] = {\n dataAdapter,\n sessionIds: new Set([sessionId]),\n }\n }\n\n const cacheEntry = adapterCache[cacheKey]\n cacheEntry.sessionIds.add(sessionId)\n\n return cacheEntry\n}\n\n/**\n * this is a callback that is passed to adapters that\n * allows them to get any sub-adapters that they need\n * internally, staying with the same worker session ID\n */\nexport type getSubAdapterType = (\n adapterConfigSnap: ConfigSnap,\n) => ReturnType\n\nexport function freeAdapterResources(specification: Record) {\n let deleteCount = 0\n const specKeys = Object.keys(specification)\n\n // if we don't specify a range, delete any adapters that are only associated\n // with that session\n if (specKeys.length === 1 && specKeys[0] === 'sessionId') {\n const { sessionId } = specification\n Object.entries(adapterCache).forEach(([cacheKey, cacheEntry]) => {\n cacheEntry.sessionIds.delete(sessionId)\n if (cacheEntry.sessionIds.size === 0) {\n deleteCount += 1\n delete adapterCache[cacheKey]\n }\n })\n } else {\n // otherwise call freeResources on all the cached data adapters\n Object.values(adapterCache).forEach(cacheEntry => {\n const regions =\n specification.regions ||\n (specification.region ? [specification.region] : [])\n for (const region of regions) {\n if (region.refName !== undefined) {\n cacheEntry.dataAdapter.freeResources(region)\n }\n }\n })\n }\n\n return deleteCount\n}\n\nexport function clearAdapterCache() {\n adapterCache = {}\n}\n","/* ---------------- for the RPC client ----------------- */\n\nlet abortSignalCounter = 0\nexport interface RemoteAbortSignal {\n abortSignalId: number\n}\nconst abortSignalIds = new WeakMap() // map of abortsignal => numerical ID\n\n/**\n * assign an ID to the given abort signal and return a plain object\n * representation\n *\n * @param signal - the signal to serialize\n * @param callfunc - function used to call\n * a remote method, will be called like callfunc('signalAbort', signalId)\n */\nexport function serializeAbortSignal(\n signal: AbortSignal,\n callfunc: (name: string, abortSignalId: number) => void,\n): RemoteAbortSignal {\n let abortSignalId = abortSignalIds.get(signal)\n if (!abortSignalId) {\n abortSignalCounter += 1\n abortSignalIds.set(signal, abortSignalCounter)\n abortSignalId = abortSignalCounter\n signal.addEventListener('abort', () => {\n const signalId = abortSignalIds.get(signal)\n if (signalId !== undefined) {\n callfunc('signalAbort', signalId)\n }\n })\n }\n return { abortSignalId }\n}\n\n/* ---------------- for the RPC server ----------------- */\n\n/**\n * test whether a given object\n * @param thing - the thing to test\n * @returns true if the thing is a remote abort signal\n */\nexport function isRemoteAbortSignal(\n thing: unknown,\n): thing is RemoteAbortSignal {\n return (\n typeof thing === 'object' &&\n thing !== null &&\n 'abortSignalId' in thing &&\n typeof thing.abortSignalId === 'number'\n )\n}\n\n// the server side keeps a set of surrogate abort controllers that can be\n// aborted based on ID\nconst surrogateAbortControllers = new Map() // numerical ID => surrogate abort controller\n\n/**\n * deserialize the result of serializeAbortSignal into an AbortSignal\n *\n * @param signal -\n * @returns an abort signal that corresponds to the given ID\n */\nexport function deserializeAbortSignal({\n abortSignalId,\n}: RemoteAbortSignal): AbortSignal {\n let surrogateAbortController = surrogateAbortControllers.get(abortSignalId)\n if (!surrogateAbortController) {\n surrogateAbortController = new AbortController()\n surrogateAbortControllers.set(abortSignalId, surrogateAbortController)\n }\n return surrogateAbortController.signal\n}\n\n/**\n * fire an abort signal from a remote abort signal ID\n *\n * @param abortSignalId -\n */\nexport function remoteAbort(props: { signalId: number }) {\n const { signalId: abortSignalId } = props\n const surrogateAbortController = surrogateAbortControllers.get(abortSignalId)\n\n if (surrogateAbortController) {\n surrogateAbortController.abort()\n }\n}\n\nexport function remoteAbortRpcHandler() {\n return {\n signalAbort: remoteAbort,\n }\n}\n","/* eslint-disable @typescript-eslint/no-unsafe-function-type */\nimport React, { useContext, useMemo } from 'react'\nimport {\n Divider,\n ListItemIcon,\n ListItemText,\n ListSubheader,\n Menu,\n MenuItem,\n PopoverOrigin,\n SvgIconProps,\n} from '@mui/material'\nimport { MenuItem as JBMenuItem, MenuItemEndDecoration } from './Menu'\nimport {\n bindHover,\n bindFocus,\n bindMenu,\n usePopupState,\n PopupState,\n} from 'material-ui-popup-state/hooks'\nimport HoverMenu from 'material-ui-popup-state/HoverMenu'\nimport ChevronRight from '@mui/icons-material/ChevronRight'\n\nconst CascadingContext = React.createContext({\n parentPopupState: null,\n rootPopupState: null,\n} as { parentPopupState: PopupState | null; rootPopupState: PopupState | null })\n\nfunction CascadingMenuItem({\n onClick,\n closeAfterItemClick,\n ...props\n}: {\n closeAfterItemClick: boolean\n onClick?: Function\n disabled?: boolean\n children: React.ReactNode\n}) {\n const { rootPopupState } = useContext(CascadingContext)\n if (!rootPopupState) {\n throw new Error('must be used inside a CascadingMenu')\n }\n\n return (\n {\n if (closeAfterItemClick) {\n rootPopupState.close()\n }\n onClick?.(event)\n }}\n />\n )\n}\n\nfunction CascadingSubmenu({\n title,\n Icon,\n inset,\n popupId,\n ...props\n}: {\n children: React.ReactNode\n title: React.ReactNode\n onMenuItemClick: Function\n Icon: React.ComponentType | undefined\n\n inset: boolean\n menuItems: JBMenuItem[]\n popupId: string\n}) {\n const { parentPopupState } = useContext(CascadingContext)\n const popupState = usePopupState({\n popupId,\n variant: 'popover',\n parentPopupState,\n })\n return (\n <>\n \n {Icon ? (\n \n \n \n ) : null}\n \n \n \n \n \n )\n}\n\nfunction CascadingSubmenuHover({\n popupState,\n onMenuItemClick,\n menuItems,\n classes,\n ...props\n}: {\n classes?: Record\n popupState: PopupState\n anchorOrigin: PopoverOrigin\n transformOrigin: PopoverOrigin\n onMenuItemClick: Function\n menuItems: JBMenuItem[]\n}) {\n const { rootPopupState } = useContext(CascadingContext)\n const context = useMemo(\n () => ({\n rootPopupState: rootPopupState || popupState,\n parentPopupState: popupState,\n }),\n [rootPopupState, popupState],\n )\n\n return (\n \n \n \n )\n}\n\nfunction CascadingMenu({\n popupState,\n onMenuItemClick,\n menuItems,\n ...props\n}: {\n popupState: PopupState\n onMenuItemClick: Function\n menuItems: JBMenuItem[]\n}) {\n const { rootPopupState } = useContext(CascadingContext)\n const context = useMemo(\n () => ({\n rootPopupState: rootPopupState || popupState,\n parentPopupState: popupState,\n }),\n [rootPopupState, popupState],\n )\n\n return (\n \n \n \n )\n}\n\nfunction EndDecoration({ item }: { item: JBMenuItem }) {\n if ('subMenu' in item) {\n return \n } else if (item.type === 'checkbox' || item.type === 'radio') {\n return (\n \n )\n }\n return null\n}\n\nfunction CascadingMenuList({\n onMenuItemClick,\n closeAfterItemClick,\n menuItems,\n ...props\n}: {\n menuItems: JBMenuItem[]\n closeAfterItemClick: boolean\n onMenuItemClick: Function\n}) {\n function handleClick(callback: Function) {\n return (event: React.MouseEvent) => {\n onMenuItemClick(event, callback)\n }\n }\n\n const hasIcon = menuItems.some(m => 'icon' in m && m.icon)\n return (\n <>\n {menuItems\n .sort((a, b) => (b.priority || 0) - (a.priority || 0))\n .map((item, idx) => {\n return 'subMenu' in item ? (\n \n \n \n ) : item.type === 'divider' ? (\n \n ) : item.type === 'subHeader' ? (\n \n {item.label}\n \n ) : (\n \n {item.icon ? (\n \n \n \n ) : null}{' '}\n \n

\n \n \n )\n })}\n \n )\n}\n\nfunction CascadingMenuChildren(props: {\n onMenuItemClick: Function\n closeAfterItemClick?: boolean\n menuItems: JBMenuItem[]\n popupState: PopupState\n}) {\n const { closeAfterItemClick = true, ...rest } = props\n return (\n \n \n \n )\n}\n\nexport default CascadingMenuChildren\n","import React from 'react'\nimport {\n Dialog as MUIDialog,\n DialogTitle,\n DialogProps,\n Divider,\n IconButton,\n ScopedCssBaseline,\n ThemeProvider,\n createTheme,\n useTheme,\n} from '@mui/material'\nimport { observer } from 'mobx-react'\nimport { makeStyles } from 'tss-react/mui'\nimport { ErrorBoundary } from 'react-error-boundary'\n\n// icons\nimport CloseIcon from '@mui/icons-material/Close'\n// locals\nimport ErrorMessage from './ErrorMessage'\nimport SanitizedHTML from './SanitizedHTML'\n\nconst useStyles = makeStyles()(theme => ({\n closeButton: {\n position: 'absolute',\n right: theme.spacing(1),\n top: theme.spacing(1),\n color: theme.palette.grey[500],\n },\n}))\n\nfunction DialogError({ error }: { error: unknown }) {\n return (\n

\n \n

\n )\n}\n\ninterface Props extends DialogProps {\n header?: React.ReactNode\n}\n\nconst Dialog = observer(function (props: Props) {\n const { classes } = useStyles()\n const { title, header, children, onClose } = props\n const theme = useTheme()\n\n return (\n \n \n {React.isValidElement(header) ? (\n header\n ) : (\n \n \n {onClose ? (\n {\n // @ts-expect-error\n onClose()\n }}\n >\n \n \n ) : null}\n \n )}\n \n\n \n \n {children}\n \n \n \n \n )\n})\n\nexport default Dialog\n","import React, { useEffect, useState } from 'react'\nimport { InputBase, Typography, TypographyProps, useTheme } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport useMeasure from '@jbrowse/core/util/useMeasure'\n\ntype Variant = TypographyProps['variant']\n\ntype EditableTypographyClassKey =\n | 'input'\n | 'inputBase'\n | 'inputRoot'\n | 'inputFocused'\n\nconst useStyles = makeStyles()(theme => ({\n input: {},\n inputBase: {},\n typography: {\n top: 6,\n left: 2,\n position: 'absolute',\n whiteSpace: 'nowrap',\n visibility: 'hidden',\n },\n inputRoot: {\n padding: theme.spacing(0.5),\n },\n inputFocused: {\n borderStyle: 'solid',\n borderWidth: 2,\n },\n}))\n\ninterface Props {\n value: string\n setValue: (value: string) => void\n variant: Variant\n classes?: Partial>\n}\n\n// using forwardRef so that MUI Tooltip can wrap this component\nconst EditableTypography = React.forwardRef(\n function EditableTypography2(props, ref) {\n const { value, setValue, variant, ...other } = props\n const [ref2, { width }] = useMeasure()\n const [editedValue, setEditedValue] = useState()\n const [inputNode, setInputNode] = useState(null)\n const [blur, setBlur] = useState(false)\n\n useEffect(() => {\n if (blur) {\n inputNode?.blur()\n setBlur(false)\n }\n }, [blur, inputNode])\n\n // possibly tss-react does not understand the passing of props to\n // useStyles, but it appears to work\n // @ts-expect-error\n const { classes } = useStyles(props, { props })\n const theme = useTheme()\n\n const val = editedValue === undefined ? value : editedValue\n\n return (\n

\n \n {val}\n \n

\n {\n setInputNode(node)\n }}\n className={classes.inputBase}\n inputProps={{\n style: {\n width,\n ...(variant && variant !== 'inherit'\n ? theme.typography[variant]\n : {}),\n },\n }}\n classes={{\n input: classes.input,\n root: classes.inputRoot,\n focused: classes.inputFocused,\n }}\n value={val}\n onChange={event => {\n setEditedValue(event.target.value)\n }}\n onKeyDown={event => {\n if (event.key === 'Enter') {\n inputNode?.blur()\n } else if (event.key === 'Escape') {\n setEditedValue(undefined)\n setBlur(true)\n }\n }}\n onBlur={() => {\n setValue(editedValue || value || '')\n setEditedValue(undefined)\n }}\n />\n

\n )\n },\n)\n\nexport default EditableTypography\n","import React, { Suspense, lazy, useState } from 'react'\nimport { IconButton, Tooltip } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n\n// locals\nimport RedErrorMessageBox from './RedErrorMessageBox'\n\n// icons\nimport RefreshIcon from '@mui/icons-material/Refresh'\nimport ReportIcon from '@mui/icons-material/Report'\n\n// lazies\nconst ErrorMessageStackTraceDialog = lazy(\n () => import('./ErrorMessageStackTraceDialog'),\n)\n\nconst useStyles = makeStyles()(theme => ({\n bg: {\n background: theme.palette.divider,\n border: '1px solid black',\n margin: 20,\n },\n iconFloat: {\n float: 'right',\n marginLeft: 100,\n },\n}))\n\nfunction parseError(str: string) {\n let snapshotError = ''\n const findStr = 'is not assignable'\n const idx = str.indexOf(findStr)\n if (idx !== -1) {\n const trim = str.slice(0, idx + findStr.length)\n // best effort to make a better error message than the default\n // mobx-state-tree\n\n // case 1. element has a path\n const match = /.*at path \"(.*)\" snapshot `(.*)` is not assignable/m.exec(\n trim,\n )\n if (match) {\n str = `Failed to load element at ${match[1]}...Failed element had snapshot`\n snapshotError = match[2]!\n }\n\n // case 2. element has no path\n const match2 = /.*snapshot `(.*)` is not assignable/.exec(trim)\n if (match2) {\n str = 'Failed to load element...Failed element had snapshot'\n snapshotError = match2[1]!\n }\n }\n return snapshotError\n}\n\nfunction ErrorButtons({\n error,\n onReset,\n}: {\n error: unknown\n onReset?: () => void\n}) {\n const { classes } = useStyles()\n const [showStack, setShowStack] = useState(false)\n return (\n

\n {typeof error === 'object' && error && 'stack' in error ? (\n \n {\n setShowStack(true)\n }}\n color=\"primary\"\n >\n \n \n \n ) : null}\n {onReset ? (\n \n \n \n \n \n ) : null}\n {showStack ? (\n \n {\n setShowStack(false)\n }}\n />\n \n ) : null}\n

\n )\n}\n\nfunction ErrorMessage({\n error,\n onReset,\n}: {\n error: unknown\n onReset?: () => void\n}) {\n const { classes } = useStyles()\n const str = `${error}`\n const str2 = str.indexOf('expected an instance of')\n const str3 = str2 !== -1 ? str.slice(0, str2) : str\n const snapshotError = parseError(str)\n return (\n \n {str3.slice(0, 10000)}\n \n {snapshotError ? (\n

\n          {JSON.stringify(JSON.parse(snapshotError), null, 2)}\n

\n ) : null}\n \n )\n}\n\nexport default ErrorMessage\n","import React from 'react'\nimport {\n Button,\n DialogContent,\n DialogContentText,\n DialogActions,\n} from '@mui/material'\nimport Dialog from '@jbrowse/core/ui/Dialog'\n\nexport default function FactoryResetDialog({\n onClose,\n open,\n onFactoryReset,\n}: {\n onClose: () => void\n open: boolean\n onFactoryReset: () => void\n}) {\n function handleDialogClose(action?: string) {\n if (action === 'reset') {\n onFactoryReset()\n }\n onClose()\n }\n\n return (\n {\n handleDialogClose()\n }}\n open={open}\n >\n \n \n Are you sure you want to reset? This will restore the default\n configuration.\n \n \n \n {\n handleDialogClose()\n }}\n color=\"primary\"\n >\n Cancel\n \n {\n handleDialogClose('reset')\n }}\n color=\"primary\"\n variant=\"contained\"\n >\n OK\n \n \n \n )\n}\n","import SvgIcon, { SvgIconProps } from '@mui/material/SvgIcon'\nimport React from 'react'\n\n// Icons below come from https://material.io/resources/icons/?icon=line_style&style=baseline\nexport function ContentCopy(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\n// https://materialdesignicons.com/ text-search icon\nexport function Indexing(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\nexport function ContentCut(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\nexport function ContentPaste(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\n// format-list-checkbox from https://materialdesignicons.com/\nexport function TrackSelector(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\n// content-save-edit from https://materialdesignicons.com/\nexport function SaveAs(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\n// content-save from https://materialdesignicons.com/\nexport function Save(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\n// dna from https://materialdesignicons.com/\nexport function DNA(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\nexport function Cable(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n","import React from 'react'\n\ntype LogoVariant = 'color' | 'black' | 'white'\n\ninterface LogoProps {\n variant?: LogoVariant\n}\n\nfunction getColors(variant?: LogoVariant) {\n if (variant === 'black') {\n return {\n midnight: '#808080',\n forrest: '#666666',\n grape: '#4d4d4d',\n mandarin: '#333333',\n gray: '#1a1a1a',\n }\n }\n if (variant === 'white') {\n return {\n midnight: '#ffffff',\n forrest: '#e6e6e6',\n grape: '#cccccc',\n mandarin: '#b3b3b3',\n gray: '#999999',\n }\n }\n return {\n midnight: '#0d233f',\n forrest: '#135560',\n grape: '#721e63',\n mandarin: '#ffb11d',\n gray: '#dadada',\n }\n}\n\nexport function Logomark({ variant }: LogoProps) {\n return (\n \n )\n}\n\nexport function LogoFull({ variant }: LogoProps) {\n return (\n \n )\n}\n\nfunction Icon({ variant }: LogoProps) {\n const colors = getColors(variant)\n return (\n <>\n \n \n \n \n \n \n )\n}\n\nfunction Text({ variant }: LogoProps) {\n const colors = getColors(variant)\n return (\n \n \n \n \n \n \n \n \n \n )\n}\n","import React, { useEffect, useRef, useState } from 'react'\nimport {\n Divider,\n ListItemIcon,\n ListItemText,\n ListSubheader,\n MenuProps as MUIMenuProps,\n MenuItem as MUIMenuItem,\n MenuItemProps,\n MenuList,\n Paper,\n Popover,\n PopoverProps,\n SvgIconProps,\n Grow,\n} from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n// icons\nimport ArrowRightIcon from '@mui/icons-material/ArrowRight'\nimport CheckBoxIcon from '@mui/icons-material/CheckBox'\nimport CheckBoxOutlineBlankIcon from '@mui/icons-material/CheckBoxOutlineBlank'\nimport RadioButtonCheckedIcon from '@mui/icons-material/RadioButtonChecked'\nimport RadioButtonUncheckedIcon from '@mui/icons-material/RadioButtonUnchecked'\n\n// other\nimport { findLastIndex } from '../util'\n\nconst useStyles = makeStyles()({\n paper: {\n position: 'fixed',\n overflowY: 'auto',\n overflowX: 'hidden',\n // So we see the popover when it's empty.\n minWidth: 16,\n minHeight: 16,\n maxWidth: 'calc(100% - 32px)',\n maxHeight: 'calc(100% - 32px)',\n top: 0,\n left: 0,\n // We disable the focus ring for mouse, touch and keyboard users.\n outline: 0,\n },\n menuItemEndDecoration: {\n padding: 0,\n margin: 0,\n height: 16,\n },\n})\n\ninterface MenuItemEndDecorationSubMenuProps {\n type: 'subMenu'\n}\n\ninterface MenuItemEndDecorationSelectorProps {\n type: 'checkbox' | 'radio'\n checked: boolean\n disabled?: boolean\n}\n\ntype MenuItemEndDecorationProps =\n | MenuItemEndDecorationSubMenuProps\n | MenuItemEndDecorationSelectorProps\n\nexport function MenuItemEndDecoration(props: MenuItemEndDecorationProps) {\n const { classes } = useStyles()\n const { type } = props\n let checked: boolean | undefined\n let disabled: boolean | undefined\n if ('checked' in props) {\n ;({ checked, disabled } = props)\n }\n let icon: React.ReactElement\n switch (type) {\n case 'subMenu': {\n icon = \n break\n }\n case 'checkbox': {\n if (checked) {\n const color = disabled ? 'inherit' : undefined\n icon = \n } else {\n icon = \n }\n break\n }\n case 'radio': {\n if (checked) {\n const color = disabled ? 'inherit' : undefined\n icon = \n } else {\n icon = \n }\n break\n }\n // No default\n }\n return

{icon}

\n}\n\nexport interface MenuDivider {\n priority?: number\n type: 'divider'\n}\n\nexport interface MenuSubHeader {\n type: 'subHeader'\n priority?: number\n label: string\n}\n\nexport interface BaseMenuItem {\n id?: string // used as react key if provided\n label: React.ReactNode\n priority?: number\n subLabel?: string\n icon?: React.ComponentType\n disabled?: boolean\n}\n\nexport interface NormalMenuItem extends BaseMenuItem {\n type?: 'normal'\n onClick: (...args: any[]) => void\n}\n\nexport interface CheckboxMenuItem extends BaseMenuItem {\n type: 'checkbox'\n checked: boolean\n onClick: (...args: any[]) => void\n}\n\nexport interface RadioMenuItem extends BaseMenuItem {\n type: 'radio'\n checked: boolean\n onClick: (...args: any[]) => void\n}\n\nexport interface SubMenuItem extends BaseMenuItem {\n type?: 'subMenu'\n subMenu: MenuItem[]\n}\n\nexport type MenuItem =\n | MenuDivider\n | MenuSubHeader\n | NormalMenuItem\n | CheckboxMenuItem\n | RadioMenuItem\n | SubMenuItem\n\ntype AnchorElProp = MUIMenuProps['anchorEl']\ntype OpenProp = MUIMenuProps['open']\ntype OnCloseProp = MUIMenuProps['onClose']\n\ninterface MenuPageProps {\n menuItems: MenuItem[]\n onMenuItemClick: (\n event: React.MouseEvent,\n callback: (...args: any[]) => void,\n ) => void\n anchorEl?: AnchorElProp\n open: OpenProp\n onClose: OnCloseProp\n top?: boolean\n}\n\ntype MenuItemStyleProp = MenuItemProps['style']\n\nfunction checkIfValid(m: MenuItem) {\n return m.type !== 'divider' && m.type !== 'subHeader' && !m.disabled\n}\nfunction findNextValidIdx(menuItems: MenuItem[], currentIdx: number) {\n const idx = menuItems.slice(currentIdx + 1).findIndex(checkIfValid)\n if (idx === -1) {\n return idx\n }\n return currentIdx + 1 + idx\n}\n\nfunction findPreviousValidIdx(menuItems: MenuItem[], currentIdx: number) {\n return findLastIndex(menuItems.slice(0, currentIdx), checkIfValid)\n}\n\nconst MenuPage = React.forwardRef(\n function MenuPage2(props, ref) {\n const [subMenuAnchorEl, setSubMenuAnchorEl] = useState()\n const [openSubMenuIdx, setOpenSubMenuIdx] = useState()\n const [isSubMenuOpen, setIsSubMenuOpen] = useState(false)\n const [selectedMenuItemIdx, setSelectedMenuItemIdx] = useState()\n const [position, setPosition] = useState<{\n top?: number\n left?: number\n }>()\n const paperRef = useRef(null)\n const { classes } = useStyles()\n\n const {\n menuItems,\n onMenuItemClick,\n open,\n onClose,\n anchorEl,\n top = false,\n } = props\n\n useEffect(() => {\n if (!open) {\n setSubMenuAnchorEl(undefined)\n setOpenSubMenuIdx(undefined)\n }\n }, [open])\n\n useEffect(() => {\n const shouldSubMenuBeOpen = open && Boolean(subMenuAnchorEl)\n let timer: ReturnType\n if (shouldSubMenuBeOpen && !isSubMenuOpen) {\n timer = setTimeout(() => {\n setIsSubMenuOpen(true)\n }, 300)\n } else if (!shouldSubMenuBeOpen && isSubMenuOpen) {\n timer = setTimeout(() => {\n setIsSubMenuOpen(false)\n }, 300)\n }\n return () => {\n clearTimeout(timer)\n }\n }, [isSubMenuOpen, open, subMenuAnchorEl])\n\n useEffect(() => {\n if (anchorEl) {\n const rect = (anchorEl as HTMLElement).getBoundingClientRect()\n if (position) {\n if (\n rect.top !== position.top ||\n rect.left + rect.width !== position.left\n ) {\n setPosition({ top: rect.top, left: rect.left + rect.width })\n }\n } else {\n setPosition({ top: rect.top, left: rect.left + rect.width })\n }\n } else if (!position) {\n setPosition({})\n }\n }, [position, anchorEl])\n\n const hasIcon = menuItems.some(\n menuItem => 'icon' in menuItem && menuItem.icon,\n )\n const menuItemStyle: MenuItemStyleProp = {}\n\n function handleClick(callback: (...args: any[]) => void) {\n return (event: React.MouseEvent) => {\n onMenuItemClick(event, callback)\n }\n }\n\n const ListContents = (\n <>\n \n {menuItems\n .sort((a, b) => (b.priority || 0) - (a.priority || 0))\n .map((menuItem, idx) => {\n if (menuItem.type === 'divider') {\n return (\n \n )\n }\n if (menuItem.type === 'subHeader') {\n return (\n \n {menuItem.label}\n \n )\n }\n let icon = null\n let endDecoration = null\n if (menuItem.icon) {\n const Icon = menuItem.icon\n icon = (\n \n \n \n )\n }\n if ('subMenu' in menuItem) {\n endDecoration = \n } else if (\n menuItem.type === 'checkbox' ||\n menuItem.type === 'radio'\n ) {\n endDecoration = (\n \n )\n }\n const onClick =\n 'onClick' in menuItem\n ? handleClick(menuItem.onClick)\n : undefined\n return (\n {\n if (e.currentTarget !== document.activeElement) {\n e.currentTarget.focus()\n setSelectedMenuItemIdx(idx)\n }\n if ('subMenu' in menuItem) {\n if (openSubMenuIdx !== idx) {\n setSubMenuAnchorEl(e.currentTarget)\n setOpenSubMenuIdx(idx)\n }\n } else {\n setSubMenuAnchorEl(undefined)\n setOpenSubMenuIdx(undefined)\n }\n }}\n onKeyDown={e => {\n switch (e.key) {\n case 'ArrowLeft':\n case 'Escape': {\n onClose?.(e, 'escapeKeyDown')\n\n break\n }\n case 'ArrowUp': {\n setSelectedMenuItemIdx(\n findPreviousValidIdx(menuItems, idx),\n )\n\n break\n }\n case 'ArrowDown': {\n const a = findNextValidIdx(menuItems, idx)\n setSelectedMenuItemIdx(a)\n\n break\n }\n default: {\n if (\n 'subMenu' in menuItem &&\n (e.key === 'ArrowRight' || e.key === 'Enter')\n ) {\n setSubMenuAnchorEl(e.currentTarget)\n setOpenSubMenuIdx(idx)\n setIsSubMenuOpen(true)\n }\n }\n }\n }}\n disabled={Boolean(menuItem.disabled)}\n >\n {icon}\n \n {endDecoration}\n \n )\n })}\n \n {menuItems.map((menuItem, idx) => {\n let subMenu = null\n if ('subMenu' in menuItem) {\n subMenu = (\n {\n setIsSubMenuOpen(false)\n setSubMenuAnchorEl(undefined)\n }}\n onMenuItemClick={onMenuItemClick}\n menuItems={menuItem.subMenu}\n />\n )\n }\n return subMenu\n })}\n \n )\n\n return top ? (\n ListContents\n ) : (\n // Grow is required for cascading sub-menus\n \n \n {ListContents}\n \n \n )\n },\n)\n\ninterface MenuProps extends PopoverProps {\n menuItems: MenuItem[]\n onMenuItemClick: (\n event: React.MouseEvent,\n callback: (...args: any[]) => void,\n ) => void\n}\n\nfunction Menu(props: MenuProps) {\n const { open, onClose, menuItems, onMenuItemClick, ...other } = props\n\n return (\n \n \n \n )\n}\n\nexport default Menu\n","import React, { useEffect, useState, useRef } from 'react'\nimport { makeStyles } from 'tss-react/mui'\n\nconst useStyles = makeStyles()({\n horizontalHandle: {\n cursor: 'row-resize',\n width: '100%',\n },\n verticalHandle: {\n cursor: 'col-resize',\n height: '100%',\n },\n flexbox_verticalHandle: {\n cursor: 'col-resize',\n alignSelf: 'stretch', // the height: 100% is actually unable to function inside flexbox\n },\n flexbox_horizontalHandle: {\n cursor: 'row-resize',\n alignSelf: 'stretch', // similar to above\n },\n})\n\nfunction ResizeHandle({\n onDrag,\n vertical = false,\n flexbox = false,\n className: originalClassName,\n onMouseDown,\n ...props\n}: {\n onDrag: (\n lastFrameDistance: number,\n totalDistance: number,\n ) => number | undefined\n onMouseDown?: (event: React.MouseEvent) => void\n vertical?: boolean\n flexbox?: boolean\n className?: string\n [props: string]: unknown\n}) {\n const [mouseDragging, setMouseDragging] = useState(false)\n const initialPosition = useRef(0)\n const prevPos = useRef(0)\n const { classes, cx } = useStyles()\n\n useEffect(() => {\n function mouseMove(event: MouseEvent) {\n event.preventDefault()\n const pos = vertical ? event.clientX : event.clientY\n const totalDistance = initialPosition.current - pos\n const lastFrameDistance = pos - prevPos.current\n prevPos.current = pos\n onDrag(lastFrameDistance, totalDistance)\n }\n\n function mouseUp() {\n setMouseDragging(false)\n }\n if (mouseDragging) {\n window.addEventListener('mousemove', mouseMove, true)\n window.addEventListener('mouseup', mouseUp, true)\n return () => {\n window.removeEventListener('mousemove', mouseMove, true)\n window.removeEventListener('mouseup', mouseUp, true)\n }\n }\n return () => {}\n }, [mouseDragging, onDrag, vertical])\n\n let className: string\n if (flexbox) {\n className = vertical\n ? classes.flexbox_verticalHandle\n : classes.flexbox_horizontalHandle\n } else if (vertical) {\n className = classes.verticalHandle\n } else {\n className = classes.horizontalHandle\n }\n\n return (\n {\n event.preventDefault()\n const pos = vertical ? event.clientX : event.clientY\n initialPosition.current = pos\n prevPos.current = pos\n setMouseDragging(true)\n onMouseDown?.(event)\n }}\n className={cx(className, originalClassName)}\n {...props}\n />\n )\n}\n\nexport default ResizeHandle\n","import React from 'react'\nimport { observer } from 'mobx-react'\nimport { Button, DialogActions, DialogContent, Typography } from '@mui/material'\nimport Dialog from './Dialog'\n\nconst ReturnToImportFormDialog = observer(function ({\n model,\n handleClose,\n}: {\n model: { clearView: () => void }\n handleClose: () => void\n}) {\n return (\n \n )\n})\n\nexport default ReturnToImportFormDialog\n","import React from 'react'\nimport escapeHTML from 'escape-html'\nimport dompurify from 'dompurify'\nimport { linkify } from '../util'\n\n// source https://github.com/sindresorhus/html-tags/blob/master/html-tags.json\n// with some random uncommon ones removed. note: we just use this to run the content\n// through dompurify without escaping if we see an htmlTag from this list\n// otherwise we escape angle brackets and things prematurely because it might be\n// something like in VCF. Ref #657\nconst htmlTags = [\n 'a',\n 'b',\n 'br',\n 'code',\n 'div',\n 'em',\n 'h1',\n 'h2',\n 'h3',\n 'h4',\n 'h5',\n 'h6',\n 'i',\n 'img',\n 'li',\n 'p',\n 'pre',\n 'span',\n 'small',\n 'strong',\n 'table',\n 'tbody',\n 'sup',\n 'sub',\n 'td',\n 'tfoot',\n 'th',\n 'thead',\n 'tr',\n 'u',\n 'ul',\n]\n\nlet added = false\n\n// adapted from is-html\n// https://github.com/sindresorhus/is-html/blob/master/index.js\nconst full = new RegExp(htmlTags.map(tag => `<${tag}\\\\b[^>]*>`).join('|'), 'i')\nfunction isHTML(str: string) {\n return full.test(str)\n}\n\n// note this is mocked during testing, see\n// packages/__mocks__/@jbrowse/core/ui/SanitizedHTML something about dompurify\n// behavior causes errors during tests, was seen in\n// products/jbrowse-web/src/tests/Connection.test.tsx test (can delete mock to\n// see)\n//\nexport default function SanitizedHTML({\n html: pre,\n className,\n}: {\n className?: string\n html: string\n}) {\n // try to add links to the text first\n const html = linkify(pre)\n const value = isHTML(html) ? html : escapeHTML(html)\n if (!added) {\n added = true\n // see https://github.com/cure53/DOMPurify/issues/317\n // only have to add this once, and can't do it globally because dompurify\n // not yet initialized at global scope\n dompurify.addHook(\n 'afterSanitizeAttributes',\n (node: {\n tagName: string\n setAttribute: (arg0: string, arg1: string) => void\n }) => {\n if (node.tagName === 'A') {\n node.setAttribute('rel', 'noopener noreferrer')\n node.setAttribute('target', '_blank')\n }\n },\n )\n }\n\n return (\n \n )\n}\n","import { blue, green, red, grey, orange } from '@mui/material/colors'\nimport { createTheme, ThemeOptions } from '@mui/material/styles'\nimport type {\n PaletteAugmentColorOptions,\n PaletteColor,\n} from '@mui/material/styles/createPalette'\nimport deepmerge from 'deepmerge'\n\ndeclare module '@mui/material/styles/createPalette' {\n interface Palette {\n tertiary: Palette['primary']\n quaternary: Palette['primary']\n highlight: Palette['primary']\n stopCodon?: string\n startCodon?: string\n bases: {\n A: Palette['primary']\n C: Palette['primary']\n G: Palette['primary']\n T: Palette['primary']\n }\n frames: [\n null,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n ]\n framesCDS: [\n null,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n ]\n }\n interface PaletteOptions {\n tertiary?: PaletteOptions['primary']\n quaternary?: PaletteOptions['primary']\n highlight?: PaletteOptions['primary']\n stopCodon?: string\n startCodon?: string\n bases?: {\n A?: PaletteOptions['primary']\n C?: PaletteOptions['primary']\n G?: PaletteOptions['primary']\n T?: PaletteOptions['primary']\n }\n framesCDS?: [\n null,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n ]\n frames?: [\n null,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n Palette['primary'] | undefined,\n ]\n }\n}\n\ntype Frames = [\n null,\n PaletteColor,\n PaletteColor,\n PaletteColor,\n PaletteColor,\n PaletteColor,\n PaletteColor,\n]\n\nconst refTheme = createTheme()\nconst midnight = '#0D233F'\nconst grape = '#721E63'\nconst forest = refTheme.palette.augmentColor({ color: { main: '#135560' } })\nconst mandarin = refTheme.palette.augmentColor({ color: { main: '#FFB11D' } })\nconst bases = {\n A: refTheme.palette.augmentColor({ color: green }),\n C: refTheme.palette.augmentColor({ color: blue }),\n G: refTheme.palette.augmentColor({ color: orange }),\n T: refTheme.palette.augmentColor({ color: red }),\n}\nconst framesCDS = [\n null,\n refTheme.palette.augmentColor({ color: { main: '#FF8080' } }),\n refTheme.palette.augmentColor({ color: { main: '#80FF80' } }),\n refTheme.palette.augmentColor({ color: { main: '#8080FF' } }),\n refTheme.palette.augmentColor({ color: { main: '#8080FF' } }),\n refTheme.palette.augmentColor({ color: { main: '#80FF80' } }),\n refTheme.palette.augmentColor({ color: { main: '#FF8080' } }),\n] as Frames\nconst frames = [\n null,\n refTheme.palette.augmentColor({ color: { main: '#8f8f8f' } }),\n refTheme.palette.augmentColor({ color: { main: '#adadad' } }),\n refTheme.palette.augmentColor({ color: { main: '#d8d8d8' } }),\n refTheme.palette.augmentColor({ color: { main: '#d8d8d8' } }),\n refTheme.palette.augmentColor({ color: { main: '#adadad' } }),\n refTheme.palette.augmentColor({ color: { main: '#8f8f8f' } }),\n] as Frames\nconst stopCodon = '#e22'\nconst startCodon = '#3e3'\n\nfunction stockTheme() {\n return {\n palette: {\n mode: undefined,\n primary: { main: midnight },\n secondary: { main: grape },\n tertiary: forest,\n quaternary: mandarin,\n highlight: mandarin,\n stopCodon,\n startCodon,\n bases,\n frames,\n framesCDS,\n },\n components: {\n MuiLink: {\n styleOverrides: {\n // the default link color uses theme.palette.primary.main which is\n // very bad with dark mode+midnight primary\n root: ({ theme }) => ({\n color: theme.palette.tertiary.main,\n }),\n },\n },\n },\n } satisfies ThemeOptions\n}\n\nfunction getDefaultTheme() {\n return {\n ...stockTheme(),\n name: 'Default (from config)',\n }\n}\n\nfunction getLightStockTheme() {\n return {\n ...stockTheme(),\n name: 'Light (stock)',\n }\n}\n\nfunction getDarkStockTheme() {\n return {\n name: 'Dark (stock)',\n palette: {\n mode: 'dark',\n primary: { main: midnight },\n secondary: { main: grape },\n tertiary: forest,\n quaternary: mandarin,\n highlight: mandarin,\n stopCodon,\n startCodon,\n bases,\n frames,\n framesCDS,\n },\n components: {\n MuiAppBar: {\n defaultProps: {\n enableColorOnDark: true,\n },\n styleOverrides: {\n root: ({ theme }) => {\n return theme.palette.primary.main\n },\n },\n },\n },\n } satisfies ThemeOptions & { name: string }\n}\n\nfunction getDarkMinimalTheme() {\n return {\n name: 'Dark (minimal)',\n palette: {\n mode: 'dark' as const,\n primary: { main: grey[700] },\n secondary: { main: grey[800] },\n tertiary: refTheme.palette.augmentColor({ color: { main: grey[900] } }),\n quaternary: mandarin,\n highlight: mandarin,\n stopCodon,\n startCodon,\n bases,\n frames,\n framesCDS,\n },\n } satisfies ThemeOptions & { name: string }\n}\n\nfunction getMinimalTheme() {\n return {\n name: 'Light (minimal)',\n palette: {\n primary: { main: grey[900] },\n secondary: { main: grey[800] },\n tertiary: refTheme.palette.augmentColor({ color: { main: grey[900] } }),\n quaternary: mandarin,\n highlight: mandarin,\n stopCodon,\n startCodon,\n bases,\n frames,\n framesCDS,\n },\n } satisfies ThemeOptions & { name: string }\n}\n\nexport const defaultThemes = {\n default: getDefaultTheme(),\n lightStock: getLightStockTheme(),\n lightMinimal: getMinimalTheme(),\n darkMinimal: getDarkMinimalTheme(),\n darkStock: getDarkStockTheme(),\n} as ThemeMap\n\nfunction overwriteArrayMerge(_: unknown, sourceArray: unknown[]) {\n return sourceArray\n}\n\nexport function createJBrowseBaseTheme(theme?: ThemeOptions): ThemeOptions {\n const themeP: ThemeOptions = {\n palette: theme?.palette,\n typography: {\n fontSize: 12,\n },\n spacing: 4,\n components: {\n MuiButton: {\n defaultProps: {\n size: 'small' as const,\n },\n styleOverrides: {\n // the default button, especially when not using variant=contained,\n // uses theme.palette.primary.main for text which is very bad with\n // dark mode+midnight primary\n //\n // keeps text secondary for darkmode, uses\n // a text-like coloring to ensure contrast\n // xref https://stackoverflow.com/a/72546130/2129219\n root: ({ theme }) =>\n theme.palette.mode === 'dark'\n ? {\n color: theme.palette.text.primary,\n }\n : undefined,\n },\n },\n MuiAccordion: {\n defaultProps: {\n disableGutters: true,\n slotProps: {\n transition: {\n timeout: 150,\n unmountOnExit: true,\n },\n },\n },\n },\n MuiFilledInput: {\n defaultProps: {\n margin: 'dense' as const,\n },\n },\n MuiFormControl: {\n defaultProps: {\n margin: 'dense' as const,\n size: 'small' as const,\n },\n },\n MuiFormHelperText: {\n defaultProps: {\n margin: 'dense' as const,\n },\n },\n\n MuiIconButton: {\n defaultProps: {\n size: 'small' as const,\n },\n },\n MuiInputBase: {\n defaultProps: {\n margin: 'dense' as const,\n },\n },\n MuiAutocomplete: {\n defaultProps: {\n size: 'small' as const,\n },\n },\n MuiInputLabel: {\n defaultProps: {\n margin: 'dense' as const,\n },\n },\n MuiToolbar: {\n defaultProps: {\n variant: 'dense' as const,\n },\n },\n MuiListItem: {\n defaultProps: {\n dense: true,\n },\n },\n MuiOutlinedInput: {\n defaultProps: {\n margin: 'dense' as const,\n },\n },\n MuiFab: {\n defaultProps: {\n size: 'small' as const,\n },\n styleOverrides: {\n secondary: {\n // @ts-expect-error\n backgroundColor: theme?.palette?.quaternary?.main,\n },\n },\n },\n MuiTable: {\n defaultProps: {\n size: 'small' as const,\n },\n },\n MuiPopover: {\n defaultProps: {\n transitionDuration: 0,\n },\n },\n MuiMenu: {\n defaultProps: {\n transitionDuration: 0,\n },\n },\n MuiMenuItem: {\n defaultProps: {\n dense: true,\n },\n },\n\n MuiTextField: {\n defaultProps: {\n margin: 'dense' as const,\n variant: 'standard' as const,\n },\n },\n MuiLink: {\n styleOverrides: {\n // the default link color uses theme.palette.primary.main which is\n // very bad with dark mode+midnight primary\n root: ({ theme }) => ({\n color: theme.palette.text.secondary,\n }),\n },\n },\n MuiCheckbox: {\n styleOverrides: {\n // the default checkbox-when-checked color uses\n // theme.palette.primary.main which is very bad with dark\n // mode+midnight primary\n //\n // keeps the forest-green checkbox by default but for darkmode, uses\n // a text-like coloring to ensure contrast xref\n // https://stackoverflow.com/a/72546130/2129219\n root: ({ theme }) =>\n theme.palette.mode === 'dark'\n ? {\n color: theme.palette.text.secondary,\n '&.Mui-checked': {\n color: theme.palette.text.secondary,\n },\n }\n : undefined,\n },\n },\n MuiRadio: {\n styleOverrides: {\n // the default checkbox-when-checked color uses\n // theme.palette.primary.main which is very bad with dark\n // mode+midnight primary\n //\n // keeps the forest-green checkbox by default but for darkmode, uses\n // a text-like coloring to ensure contrast\n // xref https://stackoverflow.com/a/72546130/2129219\n root: ({ theme }) =>\n theme.palette.mode === 'dark'\n ? {\n color: theme.palette.text.secondary,\n '&.Mui-checked': {\n color: theme.palette.text.secondary,\n },\n }\n : undefined,\n },\n },\n MuiFormLabel: {\n styleOverrides: {\n // the default checkbox-when-checked color uses\n // theme.palette.primary.main which is very bad with dark\n // mode+midnight primary\n //\n // keeps the forest-green checkbox by default but for darkmode, uses\n // a text-like coloring to ensure contrast\n // xref https://stackoverflow.com/a/72546130/2129219\n //\n\n root: ({ theme }) =>\n theme.palette.mode === 'dark'\n ? {\n color: theme.palette.text.secondary,\n '&.Mui-focused': {\n color: theme.palette.text.secondary,\n },\n }\n : undefined,\n },\n },\n MuiAccordionSummary: {\n styleOverrides: {\n root: {\n // @ts-expect-error\n backgroundColor: theme?.palette?.tertiary?.main,\n },\n content: {\n // @ts-expect-error\n color: theme?.palette?.tertiary?.contrastText,\n },\n },\n },\n MuiToggleButtonGroup: {\n defaultProps: {\n size: 'small' as const,\n },\n },\n },\n }\n return deepmerge(themeP, theme || {}, { arrayMerge: overwriteArrayMerge })\n}\n\ntype ThemeMap = Record\n\nexport function createJBrowseTheme(\n configTheme: ThemeOptions = {},\n themes = defaultThemes,\n themeName = 'default',\n) {\n return createTheme(\n createJBrowseBaseTheme(\n themeName === 'default'\n ? deepmerge(themes.default!, augmentTheme(configTheme), {\n arrayMerge: overwriteArrayMerge,\n })\n : augmentThemePlus(themes[themeName]),\n ),\n )\n}\n\nfunction augmentTheme(theme: ThemeOptions = {}) {\n if (theme.palette?.tertiary) {\n theme = deepmerge(theme, {\n palette: {\n tertiary: refTheme.palette.augmentColor(\n 'color' in theme.palette.tertiary\n ? (theme.palette.tertiary as PaletteAugmentColorOptions)\n : { color: theme.palette.tertiary },\n ),\n },\n })\n }\n\n if (theme.palette?.quaternary) {\n theme = deepmerge(theme, {\n palette: {\n quaternary: refTheme.palette.augmentColor(\n 'color' in theme.palette.quaternary\n ? (theme.palette.quaternary as PaletteAugmentColorOptions)\n : { color: theme.palette.quaternary },\n ),\n },\n })\n }\n\n return theme\n}\n\n// creates some blank quaternary/tertiary colors if unsupplied by a user theme\nfunction augmentThemePlus(theme: ThemeOptions = {}) {\n theme = augmentTheme(theme)\n if (!theme.palette?.quaternary) {\n theme = deepmerge(theme, {\n palette: {\n quaternary: refTheme.palette.augmentColor({\n color: {\n main: '#aaa',\n },\n }),\n },\n })\n }\n if (!theme.palette?.tertiary) {\n theme = deepmerge(theme, {\n palette: {\n tertiary: refTheme.palette.augmentColor({\n color: {\n main: '#aaa',\n },\n }),\n },\n })\n }\n return theme\n}\n","import React, { useState, useEffect } from 'react'\nimport {\n TextField,\n MenuItem,\n InputProps as IIP,\n TextFieldProps as TFP,\n} from '@mui/material'\nimport { observer } from 'mobx-react'\nimport { makeStyles } from 'tss-react/mui'\n\n// locals\nimport { getConf } from '../configuration'\nimport { useLocalStorage, AbstractSessionModel } from '../util'\n\nconst useStyles = makeStyles()({\n importFormEntry: {\n minWidth: 180,\n },\n})\n\nconst AssemblySelector = observer(function ({\n session,\n onChange,\n selected,\n InputProps,\n TextFieldProps,\n localStorageKey,\n helperText = 'Select assembly to view',\n}: {\n session: AbstractSessionModel\n helperText?: string\n onChange: (arg: string) => void\n selected?: string\n localStorageKey?: string\n InputProps?: IIP\n TextFieldProps?: TFP\n}) {\n const { classes } = useStyles()\n const { assemblyNames, assemblyManager } = session\n\n // constructs a localstorage key based on host/path/config to help\n // remember. non-config assists usage with e.g. embedded apps\n const config = new URLSearchParams(window.location.search).get('config')\n const [lastSelected, setLastSelected] =\n typeof jest === 'undefined' && localStorageKey\n ? useLocalStorage(\n `lastAssembly-${[\n window.location.host + window.location.pathname,\n config,\n localStorageKey,\n ].join('-')}`,\n selected,\n )\n : useState(selected)\n\n const selection = assemblyNames.includes(lastSelected || '')\n ? lastSelected\n : selected\n\n useEffect(() => {\n if (selection && selection !== selected) {\n onChange(selection)\n }\n }, [selection, onChange, selected])\n\n const error = assemblyNames.length ? '' : 'No configured assemblies'\n return (\n {\n setLastSelected(event.target.value)\n }}\n error={!!error}\n InputProps={InputProps}\n disabled={!!error}\n className={classes.importFormEntry}\n {...TextFieldProps}\n >\n {assemblyNames.map(name => {\n const assembly = assemblyManager.get(name)\n const displayName = assembly ? getConf(assembly, 'displayName') : ''\n return (\n \n {displayName || name}\n \n )\n })}\n \n )\n})\n\nexport default AssemblySelector\n","import React, { useCallback, useEffect, useState } from 'react'\nimport { observer } from 'mobx-react'\nimport {\n Box,\n FormHelperText,\n InputLabel,\n Menu,\n MenuItem,\n Tooltip,\n ToggleButtonGroup,\n ToggleButton,\n ToggleButtonProps,\n} from '@mui/material'\n\n// locals\nimport {\n FileLocation,\n AbstractRootModel,\n isUriLocation,\n isAppRootModel,\n} from '../../util/types'\nimport LocalFileChooser from './LocalFileChooser'\nimport UrlChooser from './UrlChooser'\nimport { notEmpty, useLocalStorage } from '../../util'\n\n// icons\nimport ArrowDropDownIcon from '@mui/icons-material/ArrowDropDown'\n\nconst NUM_SHOWN = 2\n\nfunction ToggleButtonWithTooltip(props: ToggleButtonProps) {\n const { title, children, ...other } = props\n return (\n \n {children}\n \n )\n}\n\nfunction shorten(str: string, len: number) {\n if (typeof str === 'string' && str.length > len) {\n return `${str.slice(0, Math.max(0, len))}…`\n }\n return str\n}\n\nconst FileSelector = observer(function (props: {\n location?: FileLocation\n setLocation: (param: FileLocation) => void\n setName?: (str: string) => void\n name?: string\n description?: string\n rootModel?: AbstractRootModel\n}) {\n const { location, name, description, rootModel, setLocation } = props\n const fileOrUrl = !location || isUriLocation(location) ? 'url' : 'file'\n const [toggleButtonValue, setToggleButtonValue] = useState(\n location && 'internetAccountId' in location && location.internetAccountId\n ? location.internetAccountId\n : fileOrUrl,\n )\n const accounts = isAppRootModel(rootModel)\n ? rootModel.internetAccounts.filter(\n f => f.type !== 'HTTPBasicInternetAccount',\n )\n : []\n\n const [recentlyUsedInternetAccounts, setRecentlyUsedInternetAccounts] =\n useLocalStorage('fileSelector-recentlyUsedInternetAccounts', [] as string[])\n\n const map = Object.fromEntries(accounts.map(a => [a.internetAccountId, a]))\n const arr = [...new Set(accounts.map(s => s.internetAccountId))].sort(\n (a, b) =>\n recentlyUsedInternetAccounts.indexOf(a) -\n recentlyUsedInternetAccounts.indexOf(b),\n )\n const shownAccounts = arr.slice(0, NUM_SHOWN)\n const hiddenAccounts = arr.slice(NUM_SHOWN)\n const [anchorEl, setAnchorEl] = useState(null)\n const selectedAccount = map[toggleButtonValue]\n\n const setLocationWithAccount = useCallback(\n (location: FileLocation) => {\n setLocation({\n ...location,\n ...(selectedAccount && isUriLocation(location)\n ? { internetAccountId: selectedAccount.internetAccountId }\n : {}),\n })\n },\n [setLocation, selectedAccount],\n )\n\n useEffect(() => {\n // if you swap account selection after inputting url\n if (\n selectedAccount &&\n isUriLocation(location) &&\n location.internetAccountId !== selectedAccount.internetAccountId\n ) {\n setLocationWithAccount(location)\n }\n }, [location, selectedAccount, setLocationWithAccount])\n\n let locationInput = (\n \n )\n if (toggleButtonValue === 'file') {\n locationInput = \n }\n if (selectedAccount?.SelectorComponent) {\n const { SelectorComponent } = selectedAccount\n locationInput = (\n \n )\n }\n\n return (\n <>\n \n {name}\n \n \n \n {\n setRecentlyUsedInternetAccounts([\n ...new Set(\n [newState, ...recentlyUsedInternetAccounts].filter(notEmpty),\n ),\n ])\n if (newState) {\n setToggleButtonValue(newState)\n }\n if (isUriLocation(location)) {\n setLocationWithAccount(location)\n }\n }}\n aria-label=\"file, url, or account picker\"\n >\n {new URLSearchParams(window.location.search).get(\n 'adminKey',\n ) ? null : (\n \n File\n \n )}\n \n URL\n \n {shownAccounts.map(id => {\n const { internetAccountId, name, toggleContents } = map[id]!\n return (\n \n {typeof toggleContents === 'string'\n ? shorten(toggleContents, 5)\n : toggleContents || shorten(name, 5)}\n \n )\n })}\n {hiddenAccounts.length > 0 ? (\n // @ts-expect-error\n {\n setAnchorEl(event.target as HTMLElement)\n }}\n selected={false}\n >\n More\n \n \n ) : null}\n \n\n {\n setAnchorEl(null)\n }}\n anchorOrigin={{ vertical: 'bottom', horizontal: 'center' }}\n transformOrigin={{ vertical: 'top', horizontal: 'center' }}\n >\n {hiddenAccounts.map(id => {\n const { internetAccountId, name } = map[id]!\n return (\n {\n setRecentlyUsedInternetAccounts([\n ...new Set(\n [\n internetAccountId,\n ...recentlyUsedInternetAccounts,\n ].filter(notEmpty),\n ),\n ])\n\n setToggleButtonValue(internetAccountId)\n setAnchorEl(null)\n }}\n >\n {name}\n \n )\n })}\n

\n \n \n {locationInput}\n {description}\n \n )\n})\n\nexport default FileSelector\n","import React, { useState, useRef, useEffect } from 'react'\nimport { drawImageOntoCanvasContext } from '../util/offscreenCanvasPonyfill'\n\nfunction PrerenderedCanvas(props: {\n width: number\n height: number\n highResolutionScaling?: number\n style?: any\n imageData?: any\n showSoftClip?: boolean\n blockKey?: string\n}) {\n const {\n width,\n height,\n highResolutionScaling = 1,\n style = {},\n imageData,\n blockKey,\n showSoftClip,\n } = props\n const [done, setDone] = useState(false)\n\n const featureCanvas = useRef(null)\n\n useEffect(() => {\n if (!imageData) {\n return\n }\n const canvas = featureCanvas.current\n if (!canvas) {\n return\n }\n const context = canvas.getContext('2d')\n if (!context) {\n return\n }\n drawImageOntoCanvasContext(imageData, context)\n setDone(true)\n }, [imageData])\n\n return (\n !!f)\n .join('_')}\n ref={featureCanvas}\n width={width * highResolutionScaling}\n height={height * highResolutionScaling}\n style={{ width, height, ...style }}\n />\n )\n}\n\nexport default PrerenderedCanvas\n","// vendored from quick-lru@6.1.1, didn't like being compiled as a 'pure-esm' nodejs dependency\n// the license is reproduced below https://github.com/sindresorhus/quick-lru/blob/main/license\n// MIT License\n\n// Copyright (c) Sindre Sorhus (https://sindresorhus.com)\n\n// Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the \"Software\"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:\n\n// The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.\n\n// THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.\nexport default class QuickLRU extends Map {\n constructor(options = {}) {\n super()\n\n if (!(options.maxSize && options.maxSize > 0)) {\n throw new TypeError('`maxSize` must be a number greater than 0')\n }\n\n if (typeof options.maxAge === 'number' && options.maxAge === 0) {\n throw new TypeError('`maxAge` must be a number greater than 0')\n }\n\n // TODO: Use private class fields when ESLint supports them.\n this.maxSize = options.maxSize\n this.maxAge = options.maxAge || Number.POSITIVE_INFINITY\n this.onEviction = options.onEviction\n this.cache = new Map()\n this.oldCache = new Map()\n this._size = 0\n }\n\n // TODO: Use private class methods when targeting Node.js 16.\n _emitEvictions(cache) {\n if (typeof this.onEviction !== 'function') {\n return\n }\n\n for (const [key, item] of cache) {\n this.onEviction(key, item.value)\n }\n }\n\n _deleteIfExpired(key, item) {\n if (typeof item.expiry === 'number' && item.expiry <= Date.now()) {\n if (typeof this.onEviction === 'function') {\n this.onEviction(key, item.value)\n }\n\n return this.delete(key)\n }\n\n return false\n }\n\n _getOrDeleteIfExpired(key, item) {\n const deleted = this._deleteIfExpired(key, item)\n if (!deleted) {\n return item.value\n }\n }\n\n _getItemValue(key, item) {\n return item.expiry ? this._getOrDeleteIfExpired(key, item) : item.value\n }\n\n _peek(key, cache) {\n const item = cache.get(key)\n\n return this._getItemValue(key, item)\n }\n\n _set(key, value) {\n this.cache.set(key, value)\n this._size++\n\n if (this._size >= this.maxSize) {\n this._size = 0\n this._emitEvictions(this.oldCache)\n this.oldCache = this.cache\n this.cache = new Map()\n }\n }\n\n _moveToRecent(key, item) {\n this.oldCache.delete(key)\n this._set(key, item)\n }\n\n *_entriesAscending() {\n for (const item of this.oldCache) {\n const [key, value] = item\n if (!this.cache.has(key)) {\n const deleted = this._deleteIfExpired(key, value)\n if (!deleted) {\n yield item\n }\n }\n }\n\n for (const item of this.cache) {\n const [key, value] = item\n const deleted = this._deleteIfExpired(key, value)\n if (!deleted) {\n yield item\n }\n }\n }\n\n get(key) {\n if (this.cache.has(key)) {\n const item = this.cache.get(key)\n\n return this._getItemValue(key, item)\n }\n\n if (this.oldCache.has(key)) {\n const item = this.oldCache.get(key)\n if (!this._deleteIfExpired(key, item)) {\n this._moveToRecent(key, item)\n return item.value\n }\n }\n }\n\n set(key, value, { maxAge = this.maxAge } = {}) {\n const expiry =\n typeof maxAge === 'number' && maxAge !== Number.POSITIVE_INFINITY\n ? Date.now() + maxAge\n : undefined\n if (this.cache.has(key)) {\n this.cache.set(key, {\n value,\n expiry,\n })\n } else {\n this._set(key, { value, expiry })\n }\n }\n\n has(key) {\n if (this.cache.has(key)) {\n return !this._deleteIfExpired(key, this.cache.get(key))\n }\n\n if (this.oldCache.has(key)) {\n return !this._deleteIfExpired(key, this.oldCache.get(key))\n }\n\n return false\n }\n\n peek(key) {\n if (this.cache.has(key)) {\n return this._peek(key, this.cache)\n }\n\n if (this.oldCache.has(key)) {\n return this._peek(key, this.oldCache)\n }\n }\n\n delete(key) {\n const deleted = this.cache.delete(key)\n if (deleted) {\n this._size--\n }\n\n return this.oldCache.delete(key) || deleted\n }\n\n clear() {\n this.cache.clear()\n this.oldCache.clear()\n this._size = 0\n }\n\n resize(newSize) {\n if (!(newSize && newSize > 0)) {\n throw new TypeError('`maxSize` must be a number greater than 0')\n }\n\n const items = [...this._entriesAscending()]\n const removeCount = items.length - newSize\n if (removeCount < 0) {\n this.cache = new Map(items)\n this.oldCache = new Map()\n this._size = items.length\n } else {\n if (removeCount > 0) {\n this._emitEvictions(items.slice(0, removeCount))\n }\n\n this.oldCache = new Map(items.slice(removeCount))\n this.cache = new Map()\n this._size = 0\n }\n\n this.maxSize = newSize\n }\n\n *keys() {\n for (const [key] of this) {\n yield key\n }\n }\n\n *values() {\n for (const [, value] of this) {\n yield value\n }\n }\n\n *[Symbol.iterator]() {\n for (const item of this.cache) {\n const [key, value] = item\n const deleted = this._deleteIfExpired(key, value)\n if (!deleted) {\n yield [key, value.value]\n }\n }\n\n for (const item of this.oldCache) {\n const [key, value] = item\n if (!this.cache.has(key)) {\n const deleted = this._deleteIfExpired(key, value)\n if (!deleted) {\n yield [key, value.value]\n }\n }\n }\n }\n\n *entriesDescending() {\n let items = [...this.cache]\n for (let i = items.length - 1; i >= 0; --i) {\n const item = items[i]\n const [key, value] = item\n const deleted = this._deleteIfExpired(key, value)\n if (!deleted) {\n yield [key, value.value]\n }\n }\n\n items = [...this.oldCache]\n for (let i = items.length - 1; i >= 0; --i) {\n const item = items[i]\n const [key, value] = item\n if (!this.cache.has(key)) {\n const deleted = this._deleteIfExpired(key, value)\n if (!deleted) {\n yield [key, value.value]\n }\n }\n }\n }\n\n *entriesAscending() {\n for (const [key, value] of this._entriesAscending()) {\n yield [key, value.value]\n }\n }\n\n get size() {\n if (!this._size) {\n return this.oldCache.size\n }\n\n let oldCacheSize = 0\n for (const key of this.oldCache.keys()) {\n if (!this.cache.has(key)) {\n oldCacheSize++\n }\n }\n\n return Math.min(this._size + oldCacheSize, this.maxSize)\n }\n\n entries() {\n return this.entriesAscending()\n }\n\n forEach(callbackFunction, thisArgument = this) {\n for (const [key, value] of this.entriesAscending()) {\n callbackFunction.call(thisArgument, value, key, this)\n }\n }\n\n get [Symbol.toStringTag]() {\n return JSON.stringify([...this.entriesAscending()])\n }\n}\n","import React, { useEffect, useRef, useState } from 'react'\nimport isObject from 'is-object'\nimport PluginManager from '../PluginManager'\nimport type { Buffer } from 'buffer'\nimport {\n addDisposer,\n getParent,\n getSnapshot,\n getEnv as getEnvMST,\n isAlive,\n isStateTreeNode,\n hasParent,\n IAnyStateTreeNode,\n IStateTreeNode,\n Instance,\n} from 'mobx-state-tree'\nimport { reaction, IReactionPublic, IReactionOptions } from 'mobx'\nimport { Feature } from './simpleFeature'\nimport {\n isSessionModel,\n isDisplayModel,\n isViewModel,\n isTrackModel,\n AssemblyManager,\n Region,\n TypeTestedByPredicate,\n} from './types'\nimport type { Region as MUIRegion } from './types/mst'\nimport { isAbortException, checkAbortSignal } from './aborting'\nimport { BaseBlock } from './blockTypes'\nimport { isUriLocation } from './types'\n\n// has to be the full path and not the relative path to get the jest mock\nimport useMeasure from '@jbrowse/core/util/useMeasure'\nimport { colord } from './colord'\n// eslint-disable-next-line react/no-deprecated\nimport { flushSync, render } from 'react-dom'\nexport * from './types'\nexport * from './aborting'\nexport * from './when'\nexport * from './range'\nexport * from './dedupe'\n\nexport * from './offscreenCanvasPonyfill'\nexport * from './offscreenCanvasUtils'\n\nexport function useDebounce(value: T, delay: number) {\n const [debouncedValue, setDebouncedValue] = useState(value)\n\n useEffect(() => {\n const handle = setTimeout(() => {\n setDebouncedValue(value)\n }, delay)\n return () => {\n clearTimeout(handle)\n }\n }, [value, delay])\n\n return debouncedValue\n}\n\n// used in ViewContainer files to get the width\nexport function useWidthSetter(\n view: { setWidth: (arg: number) => void },\n padding: string,\n) {\n const [ref, { width }] = useMeasure()\n useEffect(() => {\n if (width && isAlive(view)) {\n // sets after a requestAnimationFrame\n // https://stackoverflow.com/a/58701523/2129219\n // avoids ResizeObserver loop error being shown during development\n requestAnimationFrame(() => {\n view.setWidth(width - Number.parseInt(padding, 10) * 2)\n })\n }\n }, [padding, view, width])\n return ref\n}\n\n// https://stackoverflow.com/questions/56283920/\nexport function useDebouncedCallback(\n callback: (...args: T[]) => void,\n wait = 400,\n) {\n // track args & timeout handle between calls\n const argsRef = useRef()\n const timeout = useRef>()\n\n // make sure our timeout gets cleared if our consuming component gets\n // unmounted\n useEffect(() => {\n if (timeout.current) {\n clearTimeout(timeout.current)\n }\n }, [])\n\n return function debouncedCallback(...args: T[]) {\n // capture latest args\n argsRef.current = args\n\n // clear debounce timer\n if (timeout.current) {\n clearTimeout(timeout.current)\n }\n\n // start waiting again\n timeout.current = setTimeout(() => {\n if (argsRef.current) {\n callback(...argsRef.current)\n }\n }, wait)\n }\n}\n\n/**\n * find the first node in the hierarchy that matches the given predicate\n */\nexport function findParentThat(\n node: IAnyStateTreeNode,\n predicate: (thing: IAnyStateTreeNode) => boolean,\n) {\n if (!hasParent(node)) {\n throw new Error('node does not have parent')\n }\n let currentNode: IAnyStateTreeNode | undefined = getParent(node)\n while (currentNode && isAlive(currentNode)) {\n if (predicate(currentNode)) {\n return currentNode\n }\n if (hasParent(currentNode)) {\n currentNode = getParent(currentNode)\n } else {\n break\n }\n }\n throw new Error('no matching node found')\n}\n\ninterface Animation {\n lastPosition: number\n lastTime?: number\n lastVelocity?: number\n}\n\n// based on https://github.com/react-spring/react-spring/blob/cd5548a987383b8023efd620f3726a981f9e18ea/src/animated/FrameLoop.ts\nexport function springAnimate(\n fromValue: number,\n toValue: number,\n setValue: (value: number) => void,\n onFinish = () => {},\n precision = 0,\n tension = 400,\n friction = 20,\n clamp = true,\n) {\n const mass = 1\n if (!precision) {\n precision = Math.abs(toValue - fromValue) / 1000\n }\n\n let animationFrameId: number\n\n function update(animation: Animation) {\n const time = Date.now()\n let position = animation.lastPosition\n let lastTime = animation.lastTime || time\n let velocity = animation.lastVelocity || 0\n // If we lost a lot of frames just jump to the end.\n if (time > lastTime + 64) {\n lastTime = time\n }\n // http://gafferongames.com/game-physics/fix-your-timestep/\n const numSteps = Math.floor(time - lastTime)\n for (let i = 0; i < numSteps; ++i) {\n const force = -tension * (position - toValue)\n const damping = -friction * velocity\n const acceleration = (force + damping) / mass\n velocity += (acceleration * 1) / 1000\n position += (velocity * 1) / 1000\n }\n const isVelocity = Math.abs(velocity) <= precision\n const isDisplacement =\n tension !== 0 ? Math.abs(toValue - position) <= precision : true\n const isOvershooting =\n clamp && tension !== 0\n ? fromValue < toValue\n ? position > toValue\n : position < toValue\n : false\n const endOfAnimation = isOvershooting || (isVelocity && isDisplacement)\n if (endOfAnimation) {\n setValue(toValue)\n onFinish()\n } else {\n setValue(position)\n animationFrameId = requestAnimationFrame(() => {\n update({\n lastPosition: position,\n lastTime: time,\n lastVelocity: velocity,\n })\n })\n }\n }\n\n return [\n () => {\n update({ lastPosition: fromValue })\n },\n () => {\n cancelAnimationFrame(animationFrameId)\n },\n ]\n}\n\n/**\n * find the first node in the hierarchy that matches the given 'is' typescript\n * type guard predicate\n */\nexport function findParentThatIs boolean>(\n node: IAnyStateTreeNode,\n predicate: T,\n): TypeTestedByPredicate {\n return findParentThat(node, predicate)\n}\n\n/**\n * get the current JBrowse session model, starting at any node in the state\n * tree\n */\nexport function getSession(node: IAnyStateTreeNode) {\n try {\n return findParentThatIs(node, isSessionModel)\n } catch (e) {\n throw new Error('no session model found!')\n }\n}\n\n/**\n * get the state model of the view in the state tree that contains the given\n * node\n */\nexport function getContainingView(node: IAnyStateTreeNode) {\n try {\n return findParentThatIs(node, isViewModel)\n } catch (e) {\n throw new Error('no containing view found')\n }\n}\n\n/**\n * get the state model of the view in the state tree that contains the given\n * node\n */\nexport function getContainingTrack(node: IAnyStateTreeNode) {\n try {\n return findParentThatIs(node, isTrackModel)\n } catch (e) {\n throw new Error('no containing track found')\n }\n}\n\n/**\n * get the state model of the display in the state tree that contains the given\n * node\n */\nexport function getContainingDisplay(node: IAnyStateTreeNode) {\n try {\n return findParentThatIs(node, isDisplayModel)\n } catch (e) {\n throw new Error('no containing display found')\n }\n}\n\n/**\n * Assemble a 1-based \"locString\" from an interbase genomic location\n * @param region - Region\n * @example\n * ```ts\n * assembleLocString({ refName: 'chr1', start: 0, end: 100 })\n * // ↳ 'chr1:1..100'\n * ```\n * @example\n * ```ts\n * assembleLocString({ assemblyName: 'hg19', refName: 'chr1', start: 0, end: 100 })\n * // ↳ '{hg19}chr1:1..100'\n * ```\n * @example\n * ```ts\n * assembleLocString({ refName: 'chr1' })\n * // ↳ 'chr1'\n * ```\n * @example\n * ```ts\n * assembleLocString({ refName: 'chr1', start: 0 })\n * // ↳ 'chr1:1..'\n * ```\n * @example\n * ```ts\n * assembleLocString({ refName: 'chr1', end: 100 })\n * // ↳ 'chr1:1..100'\n * ```\n * @example\n * ```ts\n * assembleLocString({ refName: 'chr1', start: 0, end: 1 })\n * // ↳ 'chr1:1'\n * ```\n */\nexport function assembleLocString(region: ParsedLocString) {\n return assembleLocStringFast(region, toLocale)\n}\n\n// same as assembleLocString above, but does not perform toLocaleString which\n// can slow down the speed of block calculations which use assembleLocString\n// for block.key\nexport function assembleLocStringFast(\n region: ParsedLocString,\n cb = (n: number): string | number => n,\n) {\n const { assemblyName, refName, start, end, reversed } = region\n const assemblyNameString = assemblyName ? `{${assemblyName}}` : ''\n let startString: string\n if (start !== undefined) {\n startString = `:${cb(start + 1)}`\n } else if (end !== undefined) {\n startString = ':1'\n } else {\n startString = ''\n }\n let endString: string\n if (end !== undefined) {\n endString = start !== undefined && start + 1 === end ? '' : `..${cb(end)}`\n } else {\n endString = start !== undefined ? '..' : ''\n }\n let rev = ''\n if (reversed) {\n rev = '[rev]'\n }\n return `${assemblyNameString}${refName}${startString}${endString}${rev}`\n}\n\nexport interface ParsedLocString {\n assemblyName?: string\n refName: string\n start?: number\n end?: number\n reversed?: boolean\n}\n\nexport function parseLocStringOneBased(\n locString: string,\n isValidRefName: (refName: string, assemblyName?: string) => boolean,\n): ParsedLocString {\n if (!locString) {\n throw new Error('no location string provided, could not parse')\n }\n let reversed = false\n if (locString.endsWith('[rev]')) {\n reversed = true\n locString = locString.replace(/\\[rev]$/, '')\n }\n // remove any whitespace\n locString = locString.replace(/\\s/, '')\n // refNames can have colons, refer to\n // https://samtools.github.io/hts-specs/SAMv1.pdf Appendix A\n const assemblyMatch = /({(.+)})?(.+)/.exec(locString)\n if (!assemblyMatch) {\n throw new Error(`invalid location string: \"${locString}\"`)\n }\n const [, , assemblyName2, location2] = assemblyMatch\n const assemblyName = assemblyName2!\n const location = location2!\n if (!assemblyName && location.startsWith('{}')) {\n throw new Error(`no assembly name was provided in location \"${location}\"`)\n }\n const lastColonIdx = location.lastIndexOf(':')\n if (lastColonIdx === -1) {\n if (isValidRefName(location, assemblyName)) {\n return {\n assemblyName,\n refName: location,\n reversed,\n }\n }\n throw new Error(`Unknown reference sequence \"${location}\"`)\n }\n const prefix = location.slice(0, lastColonIdx)\n const suffix = location.slice(lastColonIdx + 1)\n if (\n isValidRefName(prefix, assemblyName) &&\n isValidRefName(location, assemblyName)\n ) {\n throw new Error(`ambiguous location string: \"${locString}\"`)\n } else if (isValidRefName(prefix, assemblyName)) {\n if (suffix) {\n // see if it's a range\n const rangeMatch =\n /^(-?(\\d+|\\d{1,3}(,\\d{3})*))(\\.\\.|-)(-?(\\d+|\\d{1,3}(,\\d{3})*))$/.exec(\n suffix,\n )\n // see if it's a single point\n const singleMatch = /^(-?(\\d+|\\d{1,3}(,\\d{3})*))(\\.\\.|-)?$/.exec(suffix)\n if (rangeMatch) {\n const [, start, , , , end] = rangeMatch\n if (start !== undefined && end !== undefined) {\n return {\n assemblyName,\n refName: prefix,\n start: +start.replaceAll(',', ''),\n end: +end.replaceAll(',', ''),\n reversed,\n }\n }\n } else if (singleMatch) {\n const [, start, , , separator] = singleMatch\n if (start !== undefined) {\n if (separator) {\n // indefinite end\n return {\n assemblyName,\n refName: prefix,\n start: +start.replaceAll(',', ''),\n reversed,\n }\n }\n return {\n assemblyName,\n refName: prefix,\n start: +start.replaceAll(',', ''),\n end: +start.replaceAll(',', ''),\n reversed,\n }\n }\n } else {\n throw new Error(\n `could not parse range \"${suffix}\" on location \"${locString}\"`,\n )\n }\n } else {\n return {\n assemblyName,\n refName: prefix,\n reversed,\n }\n }\n } else if (isValidRefName(location, assemblyName)) {\n return {\n assemblyName,\n refName: location,\n reversed,\n }\n }\n throw new Error(`unknown reference sequence name in location \"${locString}\"`)\n}\n\n/**\n * Parse a 1-based location string into an interbase genomic location\n * @param locString - Location string\n * @param isValidRefName - Function that checks if a refName exists in the set\n * of all known refNames, or in the set of refNames for an assembly if\n * assemblyName is given\n * @example\n * ```ts\n * parseLocString('chr1:1..100', isValidRefName)\n * // ↳ { refName: 'chr1', start: 0, end: 100 }\n * ```\n * @example\n * ```ts\n * parseLocString('chr1:1-100', isValidRefName)\n * // ↳ { refName: 'chr1', start: 0, end: 100 }\n * ```\n * @example\n * ```ts\n * parseLocString(`{hg19}chr1:1..100`, isValidRefName)\n * // ↳ { assemblyName: 'hg19', refName: 'chr1', start: 0, end: 100 }\n * ```\n * @example\n * ```ts\n * parseLocString('chr1', isValidRefName)\n * // ↳ { refName: 'chr1' }\n * ```\n * @example\n * ```ts\n * parseLocString('chr1:1', isValidRefName)\n * // ↳ { refName: 'chr1', start: 0, end: 1 }\n * ```\n * @example\n * ```ts\n * parseLocString('chr1:1..', isValidRefName)\n * // ↳ { refName: 'chr1', start: 0}\n * ```\n */\nexport function parseLocString(\n locString: string,\n isValidRefName: (refName: string, assemblyName?: string) => boolean,\n) {\n const parsed = parseLocStringOneBased(locString, isValidRefName)\n if (typeof parsed.start === 'number') {\n parsed.start -= 1\n }\n return parsed\n}\n\nexport function compareLocs(locA: ParsedLocString, locB: ParsedLocString) {\n const assemblyComp =\n locA.assemblyName || locB.assemblyName\n ? (locA.assemblyName || '').localeCompare(locB.assemblyName || '')\n : 0\n if (assemblyComp) {\n return assemblyComp\n }\n\n const refComp =\n locA.refName || locB.refName\n ? (locA.refName || '').localeCompare(locB.refName || '')\n : 0\n if (refComp) {\n return refComp\n }\n\n if (locA.start !== undefined && locB.start !== undefined) {\n const startComp = locA.start - locB.start\n if (startComp) {\n return startComp\n }\n }\n if (locA.end !== undefined && locB.end !== undefined) {\n const endComp = locA.end - locB.end\n if (endComp) {\n return endComp\n }\n }\n return 0\n}\n\nexport function compareLocStrings(\n a: string,\n b: string,\n isValidRefName: (refName: string, assemblyName?: string) => boolean,\n) {\n const locA = parseLocString(a, isValidRefName)\n const locB = parseLocString(b, isValidRefName)\n return compareLocs(locA, locB)\n}\n\n/**\n * Ensure that a number is at least min and at most max.\n *\n * @param num -\n * @param min -\n * @param max -\n */\nexport function clamp(num: number, min: number, max: number) {\n if (num < min) {\n return min\n }\n if (num > max) {\n return max\n }\n return num\n}\n\nfunction roundToNearestPointOne(num: number) {\n return Math.round(num * 10) / 10\n}\n\n/**\n * @param bp -\n * @param region -\n * @param bpPerPx -\n */\nexport function bpToPx(\n bp: number,\n {\n reversed,\n end = 0,\n start = 0,\n }: { start?: number; end?: number; reversed?: boolean },\n bpPerPx: number,\n) {\n return roundToNearestPointOne((reversed ? end - bp : bp - start) / bpPerPx)\n}\n\nconst oneEightyOverPi = 180 / Math.PI\nconst piOverOneEighty = Math.PI / 180\nexport function radToDeg(radians: number) {\n return (radians * oneEightyOverPi) % 360\n}\nexport function degToRad(degrees: number) {\n return (degrees * piOverOneEighty) % (2 * Math.PI)\n}\n\n/**\n * @returns [x, y]\n */\nexport function polarToCartesian(rho: number, theta: number) {\n return [rho * Math.cos(theta), rho * Math.sin(theta)] as [number, number]\n}\n\n/**\n * @param x - the x\n * @param y - the y\n * @returns [rho, theta]\n */\nexport function cartesianToPolar(x: number, y: number) {\n const rho = Math.sqrt(x * x + y * y)\n const theta = Math.atan(y / x)\n return [rho, theta] as [number, number]\n}\n\nexport function featureSpanPx(\n feature: Feature,\n region: { start: number; end: number; reversed?: boolean },\n bpPerPx: number,\n): [number, number] {\n return bpSpanPx(feature.get('start'), feature.get('end'), region, bpPerPx)\n}\n\nexport function bpSpanPx(\n leftBp: number,\n rightBp: number,\n region: { start: number; end: number; reversed?: boolean },\n bpPerPx: number,\n): [number, number] {\n const start = bpToPx(leftBp, region, bpPerPx)\n const end = bpToPx(rightBp, region, bpPerPx)\n return region.reversed ? [end, start] : [start, end]\n}\n\n// do an array map of an iterable\nexport function iterMap(\n iter: Iterable,\n func: (arg: T) => U,\n sizeHint?: number,\n) {\n const results = Array.from({ length: sizeHint || 0 })\n let counter = 0\n for (const item of iter) {\n results[counter] = func(item)\n counter += 1\n }\n return results\n}\n\n/**\n * Returns the index of the last element in the array where predicate is true,\n * and -1 otherwise.\n * Based on https://stackoverflow.com/a/53187807\n *\n * @param array - The source array to search in\n *\n * @param predicate - find calls predicate once for each element of the array, in\n * descending order, until it finds one where predicate returns true.\n *\n * @returns findLastIndex returns element index where predicate is true.\n * Otherwise, findLastIndex returns -1.\n */\nexport function findLastIndex(\n array: T[],\n predicate: (value: T, index: number, obj: T[]) => boolean,\n): number {\n let l = array.length\n while (l--) {\n if (predicate(array[l]!, l, array)) {\n return l\n }\n }\n return -1\n}\n\nexport function findLast(\n array: T[],\n predicate: (value: T, index: number, obj: T[]) => boolean,\n): T | undefined {\n let l = array.length\n while (l--) {\n if (predicate(array[l]!, l, array)) {\n return array[l]\n }\n }\n return undefined\n}\n\n/**\n * makes a mobx reaction with the given functions, that calls actions on the\n * model for each stage of execution, and to abort the reaction function when\n * the model is destroyed.\n *\n * Will call startedFunction(signal), successFunction(result), and\n * errorFunction(error) when the async reaction function starts, completes, and\n * errors respectively.\n *\n * @param self -\n * @param dataFunction -\n * @param asyncReactionFunction -\n * @param reactionOptions -\n * @param startedFunction -\n * @param successFunction -\n * @param errorFunction -\n */\nexport function makeAbortableReaction(\n self: T,\n dataFunction: (arg: T) => U,\n asyncReactionFunction: (\n arg: U | undefined,\n signal: AbortSignal,\n model: T,\n handle: IReactionPublic,\n ) => Promise,\n // @ts-expect-error\n reactionOptions: IReactionOptions,\n startedFunction: (aborter: AbortController) => void,\n successFunction: (arg: V) => void,\n errorFunction: (err: unknown) => void,\n) {\n let inProgress: AbortController | undefined\n\n function handleError(error: unknown) {\n if (!isAbortException(error)) {\n if (isAlive(self)) {\n errorFunction(error)\n } else {\n console.error(error)\n }\n }\n }\n\n addDisposer(\n self,\n reaction(\n () => {\n try {\n return dataFunction(self)\n } catch (e) {\n handleError(e)\n return undefined\n }\n },\n async (data, mobxReactionHandle) => {\n if (inProgress && !inProgress.signal.aborted) {\n inProgress.abort()\n }\n\n if (!isAlive(self)) {\n return\n }\n inProgress = new AbortController()\n\n const thisInProgress = inProgress\n startedFunction(thisInProgress)\n try {\n const result = await asyncReactionFunction(\n data,\n thisInProgress.signal,\n self,\n // @ts-expect-error\n mobxReactionHandle,\n )\n checkAbortSignal(thisInProgress.signal)\n if (isAlive(self)) {\n successFunction(result)\n }\n } catch (e) {\n if (!thisInProgress.signal.aborted) {\n thisInProgress.abort()\n }\n handleError(e)\n }\n },\n reactionOptions,\n ),\n )\n addDisposer(self, () => {\n if (inProgress && !inProgress.signal.aborted) {\n inProgress.abort()\n }\n })\n}\n\nexport function renameRegionIfNeeded(\n refNameMap: Record | undefined,\n region: Region | Instance,\n): Region & { originalRefName?: string } {\n if (isStateTreeNode(region) && !isAlive(region)) {\n return region\n }\n\n if (refNameMap?.[region.refName]) {\n // clone the region so we don't modify it\n region = isStateTreeNode(region)\n ? { ...getSnapshot(region) }\n : { ...region }\n\n // modify it directly in the container\n const newRef = refNameMap[region.refName]\n if (newRef) {\n return { ...region, refName: newRef, originalRefName: region.refName }\n }\n }\n return region\n}\n\nexport async function renameRegionsIfNeeded<\n ARGTYPE extends {\n assemblyName?: string\n regions?: Region[]\n signal?: AbortSignal\n adapterConfig: Record\n sessionId: string\n statusCallback?: (arg: string) => void\n },\n>(assemblyManager: AssemblyManager, args: ARGTYPE) {\n const { regions = [], adapterConfig } = args\n if (!args.sessionId) {\n throw new Error('sessionId is required')\n }\n\n const assemblyNames = regions.map(region => region.assemblyName)\n const assemblyMaps = Object.fromEntries(\n await Promise.all(\n [...new Set(assemblyNames)].map(async assemblyName => {\n return [\n assemblyName,\n await assemblyManager.getRefNameMapForAdapter(\n adapterConfig,\n assemblyName,\n args,\n ),\n ]\n }),\n ),\n )\n\n return {\n ...args,\n regions: regions.map((region, i) =>\n // note: uses assemblyNames defined above since region could be dead now\n renameRegionIfNeeded(assemblyMaps[assemblyNames[i]!], region),\n ),\n }\n}\n\nexport function minmax(a: number, b: number) {\n return [Math.min(a, b), Math.max(a, b)] as const\n}\n\nexport function shorten(name: string, max = 70, short = 30) {\n return name.length > max\n ? `${name.slice(0, short)}...${name.slice(-short)}`\n : name\n}\n\nexport function stringify(\n {\n refName,\n coord,\n assemblyName,\n oob,\n }: {\n assemblyName?: string\n coord: number\n refName?: string\n oob?: boolean\n },\n useAssemblyName?: boolean,\n) {\n return [\n assemblyName && useAssemblyName ? `{${assemblyName}}` : '',\n refName\n ? `${shorten(refName)}:${toLocale(coord)}${oob ? ' (out of bounds)' : ''}`\n : '',\n ].join('')\n}\n\n// this is recommended in a later comment in\n// https://github.com/electron/electron/issues/2288 for detecting electron in a\n// renderer process, which is the one that has node enabled for us\n//\n// const isElectron = process.versions.electron\n// const i2 = process.versions.hasOwnProperty('electron')\nexport const isElectron = /electron/i.test(\n typeof navigator !== 'undefined' ? navigator.userAgent : '',\n)\n\nexport function revcom(seqString: string) {\n return reverse(complement(seqString))\n}\n\nexport function reverse(seqString: string) {\n return seqString.split('').reverse().join('')\n}\n\nexport const complement = (() => {\n const complementRegex = /[ACGT]/gi\n\n // from bioperl: tr/acgtrymkswhbvdnxACGTRYMKSWHBVDNX/tgcayrkmswdvbhnxTGCAYRKMSWDVBHNX/\n // generated with:\n // perl -MJSON -E '@l = split \"\",\"acgtrymkswhbvdnxACGTRYMKSWHBVDNX\"; print to_json({ map { my $in = $_; tr/acgtrymkswhbvdnxACGTRYMKSWHBVDNX/tgcayrkmswdvbhnxTGCAYRKMSWDVBHNX/; $in => $_ } @l})'\n const complementTable = {\n S: 'S',\n w: 'w',\n T: 'A',\n r: 'y',\n a: 't',\n N: 'N',\n K: 'M',\n x: 'x',\n d: 'h',\n Y: 'R',\n V: 'B',\n y: 'r',\n M: 'K',\n h: 'd',\n k: 'm',\n C: 'G',\n g: 'c',\n t: 'a',\n A: 'T',\n n: 'n',\n W: 'W',\n X: 'X',\n m: 'k',\n v: 'b',\n B: 'V',\n s: 's',\n H: 'D',\n c: 'g',\n D: 'H',\n b: 'v',\n R: 'Y',\n G: 'C',\n } as Record\n\n return (seqString: string) => {\n return seqString.replaceAll(complementRegex, m => complementTable[m] || '')\n }\n})()\n\n// requires immediate execution in jest environment, because (hypothesis) it\n// otherwise listens for prerendered_canvas but reads empty pixels, and doesn't\n// get the contents of the canvas\nexport const rIC =\n typeof jest === 'undefined'\n ? // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n typeof window !== 'undefined' && window.requestIdleCallback\n ? window.requestIdleCallback\n : (cb: () => void) =>\n setTimeout(() => {\n cb()\n }, 1)\n : (cb: () => void) => {\n cb()\n }\n\n// prettier-ignore\nconst widths = [0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2796875,0.2765625,0.3546875,0.5546875,0.5546875,0.8890625,0.665625,0.190625,0.3328125,0.3328125,0.3890625,0.5828125,0.2765625,0.3328125,0.2765625,0.3015625,0.5546875,0.5546875,0.5546875,0.5546875,0.5546875,0.5546875,0.5546875,0.5546875,0.5546875,0.5546875,0.2765625,0.2765625,0.584375,0.5828125,0.584375,0.5546875,1.0140625,0.665625,0.665625,0.721875,0.721875,0.665625,0.609375,0.7765625,0.721875,0.2765625,0.5,0.665625,0.5546875,0.8328125,0.721875,0.7765625,0.665625,0.7765625,0.721875,0.665625,0.609375,0.721875,0.665625,0.94375,0.665625,0.665625,0.609375,0.2765625,0.3546875,0.2765625,0.4765625,0.5546875,0.3328125,0.5546875,0.5546875,0.5,0.5546875,0.5546875,0.2765625,0.5546875,0.5546875,0.221875,0.240625,0.5,0.221875,0.8328125,0.5546875,0.5546875,0.5546875,0.5546875,0.3328125,0.5,0.2765625,0.5546875,0.5,0.721875,0.5,0.5,0.5,0.3546875,0.259375,0.353125,0.5890625]\n\n// xref https://gist.github.com/tophtucker/62f93a4658387bb61e4510c37e2e97cf\nexport function measureText(str: unknown, fontSize = 10) {\n const avg = 0.5279276315789471\n const s = String(str)\n let total = 0\n for (let i = 0; i < s.length; i++) {\n const code = s.charCodeAt(i)\n total += widths[code] ?? avg\n }\n return total * fontSize\n}\n\nexport type Frame = 1 | 2 | 3 | -1 | -2 | -3\n\nexport function getFrame(\n start: number,\n end: number,\n strand: 1 | -1,\n phase: 0 | 1 | 2,\n): Frame {\n return strand === 1\n ? ((((start + phase) % 3) + 1) as 1 | 2 | 3)\n : ((-1 * ((end - phase) % 3) - 1) as -1 | -2 | -3)\n}\n\nexport const defaultStarts = ['ATG']\nexport const defaultStops = ['TAA', 'TAG', 'TGA']\nexport const defaultCodonTable = {\n TCA: 'S',\n TCC: 'S',\n TCG: 'S',\n TCT: 'S',\n TTC: 'F',\n TTT: 'F',\n TTA: 'L',\n TTG: 'L',\n TAC: 'Y',\n TAT: 'Y',\n TAA: '*',\n TAG: '*',\n TGC: 'C',\n TGT: 'C',\n TGA: '*',\n TGG: 'W',\n CTA: 'L',\n CTC: 'L',\n CTG: 'L',\n CTT: 'L',\n CCA: 'P',\n CCC: 'P',\n CCG: 'P',\n CCT: 'P',\n CAC: 'H',\n CAT: 'H',\n CAA: 'Q',\n CAG: 'Q',\n CGA: 'R',\n CGC: 'R',\n CGG: 'R',\n CGT: 'R',\n ATA: 'I',\n ATC: 'I',\n ATT: 'I',\n ATG: 'M',\n ACA: 'T',\n ACC: 'T',\n ACG: 'T',\n ACT: 'T',\n AAC: 'N',\n AAT: 'N',\n AAA: 'K',\n AAG: 'K',\n AGC: 'S',\n AGT: 'S',\n AGA: 'R',\n AGG: 'R',\n GTA: 'V',\n GTC: 'V',\n GTG: 'V',\n GTT: 'V',\n GCA: 'A',\n GCC: 'A',\n GCG: 'A',\n GCT: 'A',\n GAC: 'D',\n GAT: 'D',\n GAA: 'E',\n GAG: 'E',\n GGA: 'G',\n GGC: 'G',\n GGG: 'G',\n GGT: 'G',\n}\n\n/**\n * take CodonTable above and generate larger codon table that includes all\n * permutations of upper and lower case nucleotides\n */\nexport function generateCodonTable(table: any) {\n const tempCodonTable: Record = {}\n Object.keys(table).forEach(codon => {\n const aa = table[codon]\n const nucs: string[][] = []\n for (let i = 0; i < 3; i++) {\n const nuc = codon.charAt(i)\n nucs[i] = []\n nucs[i]![0] = nuc.toUpperCase()\n nucs[i]![1] = nuc.toLowerCase()\n }\n for (let i = 0; i < 2; i++) {\n const n0 = nucs[0]![i]!\n for (let j = 0; j < 2; j++) {\n const n1 = nucs[1]![j]!\n for (let k = 0; k < 2; k++) {\n const n2 = nucs[2]![k]!\n const triplet = n0 + n1 + n2\n tempCodonTable[triplet] = aa\n }\n }\n }\n })\n return tempCodonTable\n}\n\n// call statusCallback with current status and clear when finished\nexport async function updateStatus(\n msg: string,\n cb: (arg: string) => void,\n fn: () => U | Promise,\n) {\n cb(msg)\n const res = await fn()\n cb('')\n return res\n}\n\nexport function hashCode(str: string) {\n let hash = 0\n if (str.length === 0) {\n return hash\n }\n for (let i = 0; i < str.length; i++) {\n const chr = str.charCodeAt(i)\n hash = (hash << 5) - hash + chr\n hash |= 0 // Convert to 32bit integer\n }\n return hash\n}\n\nexport function objectHash(obj: Record) {\n return `${hashCode(JSON.stringify(obj))}`\n}\n\ninterface VirtualOffset {\n blockPosition: number\n}\ninterface Block {\n minv: VirtualOffset\n maxv: VirtualOffset\n}\n\nexport async function bytesForRegions(\n regions: Region[],\n index: {\n blocksForRange: (\n ref: string,\n start: number,\n end: number,\n ) => Promise\n },\n) {\n const blockResults = await Promise.all(\n regions.map(r => index.blocksForRange(r.refName, r.start, r.end)),\n )\n\n return blockResults\n .flat()\n .map(block => ({\n start: block.minv.blockPosition,\n end: block.maxv.blockPosition + 65535,\n }))\n .reduce((a, b) => a + b.end - b.start, 0)\n}\n\nexport interface ViewSnap {\n bpPerPx: number\n interRegionPaddingWidth: number\n minimumBlockWidth: number\n width: number\n offsetPx: number\n staticBlocks: { contentBlocks: BaseBlock[]; blocks: BaseBlock[] }\n displayedRegions: (IStateTreeNode & {\n start: number\n end: number\n refName: string\n reversed?: boolean\n assemblyName: string\n })[]\n}\n\n// supported adapter types by text indexer ensure that this matches the method\n// found in @jbrowse/text-indexing/util\nexport function isSupportedIndexingAdapter(type = '') {\n return [\n 'Gff3TabixAdapter',\n 'VcfTabixAdapter',\n 'Gff3Adapter',\n 'VcfAdapter',\n ].includes(type)\n}\n\nexport function getBpDisplayStr(totalBp: number) {\n if (Math.floor(totalBp / 1_000_000) > 0) {\n return `${Number.parseFloat((totalBp / 1_000_000).toPrecision(3))}Mbp`\n } else if (Math.floor(totalBp / 1_000) > 0) {\n return `${Number.parseFloat((totalBp / 1_000).toPrecision(3))}Kbp`\n } else {\n return `${toLocale(Math.floor(totalBp))}bp`\n }\n}\n\nexport function toLocale(n: number) {\n return n.toLocaleString('en-US')\n}\n\nexport function getTickDisplayStr(totalBp: number, bpPerPx: number) {\n return Math.floor(bpPerPx / 1_000) > 0\n ? `${toLocale(Number.parseFloat((totalBp / 1_000_000).toFixed(2)))}M`\n : toLocale(Math.floor(totalBp))\n}\n\nexport function getViewParams(model: IAnyStateTreeNode, exportSVG?: boolean) {\n // @ts-expect-error\n const { dynamicBlocks, staticBlocks, offsetPx } = getContainingView(model)\n const b = dynamicBlocks?.contentBlocks[0] || {}\n const staticblock = staticBlocks?.contentBlocks[0] || {}\n const staticblock1 = staticBlocks?.contentBlocks[1] || {}\n return {\n offsetPx: exportSVG ? 0 : offsetPx - staticblock.offsetPx,\n offsetPx1: exportSVG ? 0 : offsetPx - staticblock1.offsetPx,\n start: b.start as number,\n end: b.end as number,\n }\n}\n\nexport function getLayoutId({\n sessionId,\n layoutId,\n}: {\n sessionId: string\n layoutId: string\n}) {\n return `${sessionId}-${layoutId}`\n}\n\n// Hook from https://usehooks.com/useLocalStorage/\nexport function useLocalStorage(key: string, initialValue: T) {\n const [storedValue, setStoredValue] = useState(() => {\n if (typeof window === 'undefined') {\n return initialValue\n }\n try {\n const item = window.localStorage.getItem(key)\n return item ? JSON.parse(item) : initialValue\n } catch (error) {\n console.error(error)\n return initialValue\n }\n })\n const setValue = (value: T | ((val: T) => T)) => {\n try {\n const valueToStore =\n value instanceof Function ? value(storedValue) : value\n setStoredValue(valueToStore)\n if (typeof window !== 'undefined') {\n window.localStorage.setItem(key, JSON.stringify(valueToStore))\n }\n } catch (error) {\n console.error(error)\n }\n }\n return [storedValue, setValue] as const\n}\n\nexport function getUriLink(value: { uri: string; baseUri?: string }) {\n const { uri, baseUri = '' } = value\n let href: string\n try {\n href = new URL(uri, baseUri).href\n } catch (e) {\n href = uri\n }\n return href\n}\n\nexport function getStr(obj: unknown) {\n return isObject(obj)\n ? isUriLocation(obj)\n ? getUriLink(obj)\n : JSON.stringify(obj)\n : String(obj)\n}\n\n// tries to measure grid width without HTML tags included\nexport function coarseStripHTML(s: string) {\n return s.replaceAll(/(<([^>]+)>)/gi, '')\n}\n\n// based on autolink-js, license MIT\n// https://github.com/bryanwoods/autolink-js/blob/1418049970152c56ced73d43dcc62d80b320fb71/autolink.js#L9\nexport function linkify(s: string) {\n const pattern =\n /(^|[\\s\\n]|<[A-Za-z]*\\/?>)((?:https?|ftp):\\/\\/[-A-Z0-9+\\u0026\\u2019@#/%?=()~_|!:,.;]*[-A-Z0-9+\\u0026@#/%=~()_|])/gi\n return s.replaceAll(pattern, '$1$2')\n}\n\n// heuristic measurement for a column of a @mui/x-data-grid, pass in\n// values from a column\nexport function measureGridWidth(\n elements: unknown[],\n args?: {\n minWidth?: number\n fontSize?: number\n maxWidth?: number\n padding?: number\n stripHTML?: boolean\n },\n) {\n const {\n padding = 30,\n minWidth = 80,\n fontSize = 12,\n maxWidth = 1000,\n stripHTML = false,\n } = args || {}\n return max(\n elements\n .map(element => getStr(element))\n .map(str => (stripHTML ? coarseStripHTML(str) : str))\n .map(str => measureText(str, fontSize))\n .map(n => Math.min(Math.max(n + padding, minWidth), maxWidth)),\n )\n}\n\nexport function getEnv(obj: any) {\n return getEnvMST<{ pluginManager: PluginManager }>(obj)\n}\n\nexport function localStorageGetItem(item: string) {\n return typeof localStorage !== 'undefined'\n ? localStorage.getItem(item)\n : undefined\n}\n\nexport function localStorageSetItem(str: string, item: string) {\n if (typeof localStorage !== 'undefined') {\n localStorage.setItem(str, item)\n }\n}\n\nexport function max(arr: number[], init = Number.NEGATIVE_INFINITY) {\n let max = init\n for (const entry of arr) {\n max = entry > max ? entry : max\n }\n return max\n}\n\nexport function min(arr: number[], init = Number.POSITIVE_INFINITY) {\n let min = init\n for (const entry of arr) {\n min = entry < min ? entry : min\n }\n return min\n}\n\nexport function sum(arr: number[]) {\n let sum = 0\n for (const entry of arr) {\n sum += entry\n }\n return sum\n}\n\nexport function avg(arr: number[]) {\n return sum(arr) / arr.length\n}\n\nexport function groupBy(array: Iterable, predicate: (v: T) => string) {\n const result = {} as Record\n for (const value of array) {\n const t = predicate(value)\n if (!result[t]) {\n result[t] = []\n }\n result[t].push(value)\n }\n return result\n}\n\nexport function notEmpty(value: T | null | undefined): value is T {\n return value !== null && value !== undefined\n}\n\nexport function mergeIntervals(\n intervals: T[],\n w = 5000,\n) {\n // test if there are at least 2 intervals\n if (intervals.length <= 1) {\n return intervals\n }\n\n const stack = [] as T[]\n let top = null\n\n // sort the intervals based on their start values\n intervals = intervals.sort((a, b) => a.start - b.start)\n\n // push the 1st interval into the stack\n stack.push(intervals[0]!)\n\n // start from the next interval and merge if needed\n for (let i = 1; i < intervals.length; i++) {\n // get the top element\n top = stack.at(-1)!\n\n // if the current interval doesn't overlap with the\n // stack top element, push it to the stack\n if (top.end + w < intervals[i]!.start - w) {\n stack.push(intervals[i]!)\n }\n // otherwise update the end value of the top element\n // if end of current interval is higher\n else if (top.end < intervals[i]!.end) {\n top.end = Math.max(top.end, intervals[i]!.end)\n stack.pop()\n stack.push(top)\n }\n }\n\n return stack\n}\n\ninterface BasicFeature {\n end: number\n start: number\n refName: string\n assemblyName?: string\n}\n\n// returns new array non-overlapping features\nexport function gatherOverlaps(regions: BasicFeature[], w = 5000) {\n const memo = {} as Record\n for (const x of regions) {\n if (!memo[x.refName]) {\n memo[x.refName] = []\n }\n memo[x.refName]!.push(x)\n }\n\n return Object.values(memo).flatMap(group =>\n mergeIntervals(\n group.sort((a, b) => a.start - b.start),\n w,\n ),\n )\n}\n\nexport function stripAlpha(str: string) {\n return colord(str).alpha(1).toHex()\n}\n\nexport function getStrokeProps(str: string) {\n const c = colord(str)\n return {\n strokeOpacity: c.alpha(),\n stroke: c.alpha(1).toHex(),\n }\n}\n\nexport function getFillProps(str: string) {\n const c = colord(str)\n return {\n fillOpacity: c.alpha(),\n fill: c.alpha(1).toHex(),\n }\n}\n\n// https://react.dev/reference/react-dom/server/renderToString#removing-rendertostring-from-the-client-code\nexport function renderToStaticMarkup(\n node: React.ReactElement,\n createRootFn?: (elt: Element | DocumentFragment) => {\n render: (node: React.ReactElement) => unknown\n },\n) {\n const div = document.createElement('div')\n flushSync(() => {\n if (createRootFn) {\n createRootFn(div).render(node)\n } else {\n // eslint-disable-next-line @typescript-eslint/no-deprecated\n render(node, div)\n }\n })\n return div.innerHTML.replaceAll(/\\brgba\$(.+?),[^,]+?\$/g, 'rgb($1)')\n}\n\nexport function isGzip(buf: Buffer) {\n return buf[0] === 31 && buf[1] === 139 && buf[2] === 8\n}\n\nexport {\n default as SimpleFeature,\n type Feature,\n type SimpleFeatureSerialized,\n isFeature,\n} from './simpleFeature'\n\nexport { blobToDataURL } from './blobToDataURL'\n","import { getParent, isRoot, IAnyStateTreeNode } from 'mobx-state-tree'\nimport { getSession, objectHash, getEnv } from './index'\nimport { PreFileLocation, FileLocation } from './types'\nimport { readConfObject, AnyConfigurationModel } from '../configuration'\n\n/* utility functions for use by track models and so forth */\n\nexport function getTrackAssemblyNames(\n track: IAnyStateTreeNode & { configuration: AnyConfigurationModel },\n) {\n return getConfAssemblyNames(track.configuration)\n}\n\nexport function getConfAssemblyNames(conf: AnyConfigurationModel) {\n const trackAssemblyNames = readConfObject(conf, 'assemblyNames') as\n | string[]\n | undefined\n if (!trackAssemblyNames) {\n // Check if it's an assembly sequence track\n const parent = getParent(conf)\n if ('sequence' in parent) {\n return [readConfObject(parent, 'name') as string]\n } else {\n throw new Error('unknown assembly names')\n }\n }\n return trackAssemblyNames\n}\n\n/**\n * return the rpcSessionId of the highest parent node in the tree that has an\n * rpcSessionId */\n\nexport function getRpcSessionId(thisNode: IAnyStateTreeNode) {\n interface NodeWithRpcSessionId extends IAnyStateTreeNode {\n rpcSessionId: string\n }\n let highestRpcSessionId: string | undefined\n\n for (let node = thisNode; !isRoot(node); node = getParent(node)) {\n if ('rpcSessionId' in node) {\n highestRpcSessionId = (node as NodeWithRpcSessionId).rpcSessionId\n }\n }\n if (!highestRpcSessionId) {\n throw new Error(\n 'getRpcSessionId failed, no parent node in the state tree has an `rpcSessionId` attribute',\n )\n }\n return highestRpcSessionId\n}\n\n/**\n * given an MST node, get the renderprops of the first parent container that\n * has renderProps\n * @param node -\n * @returns renderprops, or empty object if none found\n */\nexport function getParentRenderProps(node: IAnyStateTreeNode) {\n for (\n let currentNode = getParent(node);\n !isRoot(currentNode);\n currentNode = getParent(currentNode)\n ) {\n if ('renderProps' in currentNode) {\n return currentNode.renderProps()\n }\n }\n\n return {}\n}\n\nexport const UNKNOWN = 'UNKNOWN'\nexport const UNSUPPORTED = 'UNSUPPORTED'\n\nlet blobMap: Record = {}\n\n// get a specific blob\nexport function getBlob(id: string) {\n return blobMap[id]\n}\n\n// used to export entire context to webworker\nexport function getBlobMap() {\n return blobMap\n}\n\n// used in new contexts like webworkers\nexport function setBlobMap(map: Record) {\n blobMap = map\n}\n\nlet counter = 0\n\n// blob files are stored in a global map. the blobId is based on a combination\n// of timestamp plus counter to be unique across sessions and fast repeated\n// calls\nexport function storeBlobLocation(location: PreFileLocation) {\n if ('blob' in location) {\n const blobId = `b${+Date.now()}-${counter++}`\n blobMap[blobId] = location.blob\n return { name: location.blob.name, blobId, locationType: 'BlobLocation' }\n }\n return location\n}\n\n/**\n * creates a new location from the provided location including the appropriate suffix and location type\n * @param location - the FileLocation\n * @param suffix - the file suffix (e.g. .bam)\n * @returns the constructed location object from the provided parameters\n */\nexport function makeIndex(location: FileLocation, suffix: string) {\n if ('uri' in location) {\n return { uri: location.uri + suffix, locationType: 'UriLocation' }\n }\n\n if ('localPath' in location) {\n return {\n localPath: location.localPath + suffix,\n locationType: 'LocalPathLocation',\n }\n }\n\n return location\n}\n\n/**\n * constructs a potential index file (with suffix) from the provided file name\n * @param name - the name of the index file\n * @param typeA - one option of a potential two file suffix (e.g. CSI, BAI)\n * @param typeB - the second option of a potential two file suffix (e.g. CSI, BAI)\n * @returns a likely name of the index file for a given filename\n */\nexport function makeIndexType(\n name: string | undefined,\n typeA: string,\n typeB: string,\n) {\n return name?.toUpperCase().endsWith(typeA) ? typeA : typeB\n}\n\nexport interface AdapterConfig {\n type: string\n [key: string]: unknown\n}\n\nexport type AdapterGuesser = (\n file: FileLocation,\n index?: FileLocation,\n adapterHint?: string,\n) => AdapterConfig | undefined\n\nexport type TrackTypeGuesser = (adapterName: string) => string | undefined\n\nexport function getFileName(track: FileLocation) {\n const uri = 'uri' in track ? track.uri : undefined\n const localPath = 'localPath' in track ? track.localPath : undefined\n const blob = 'blobId' in track ? track : undefined\n return (\n blob?.name ||\n uri?.slice(uri.lastIndexOf('/') + 1) ||\n localPath?.slice(localPath.replace(/\\\\/g, '/').lastIndexOf('/') + 1) ||\n ''\n )\n}\n\nexport function guessAdapter(\n file: FileLocation,\n index: FileLocation | undefined,\n adapterHint?: string,\n model?: IAnyStateTreeNode,\n) {\n if (model) {\n const { pluginManager } = getEnv(model)\n const adapterGuesser = pluginManager.evaluateExtensionPoint(\n 'Core-guessAdapterForLocation',\n (\n _file: FileLocation,\n _index?: FileLocation,\n _adapterHint?: string,\n ): AdapterConfig | undefined => {\n return undefined\n },\n ) as AdapterGuesser\n\n const adapter = adapterGuesser(file, index, adapterHint)\n\n if (adapter) {\n return adapter\n }\n }\n\n return {\n type: UNKNOWN,\n }\n}\n\nexport function guessTrackType(\n adapterType: string,\n model?: IAnyStateTreeNode,\n): string {\n if (model) {\n const session = getSession(model)\n\n const trackTypeGuesser = getEnv(\n session,\n ).pluginManager.evaluateExtensionPoint(\n 'Core-guessTrackTypeForLocation',\n (_adapterName: string): AdapterConfig | undefined => {\n return undefined\n },\n ) as TrackTypeGuesser\n\n const trackType = trackTypeGuesser(adapterType)\n\n if (trackType) {\n return trackType\n }\n }\n return 'FeatureTrack'\n}\n\nexport function generateUnsupportedTrackConf(\n trackName: string,\n trackUrl: string,\n categories: string[] | undefined,\n) {\n const conf = {\n type: 'FeatureTrack',\n name: `${trackName} (Unsupported)`,\n description: `Support not yet implemented for \"${trackUrl}\"`,\n category: categories,\n trackId: '',\n }\n conf.trackId = objectHash(conf)\n return conf\n}\n\nexport function generateUnknownTrackConf(\n trackName: string,\n trackUrl: string,\n categories: string[] | undefined,\n) {\n const conf = {\n type: 'FeatureTrack',\n name: `${trackName} (Unknown)`,\n description: `Could not determine track type for \"${trackUrl}\"`,\n category: categories,\n trackId: '',\n }\n conf.trackId = objectHash(conf)\n return conf\n}\n\nexport function getTrackName(\n conf: AnyConfigurationModel,\n session: { assemblies: AnyConfigurationModel[] },\n) {\n const trackName = readConfObject(conf, 'name') as string\n if (!trackName && readConfObject(conf, 'type') === 'ReferenceSequenceTrack') {\n const asm = session.assemblies.find(a => a.sequence === conf)\n return asm\n ? `Reference sequence (${\n readConfObject(asm, 'displayName') || readConfObject(asm, 'name')\n })`\n : 'Reference sequence'\n }\n return trackName\n}\n","import { types } from 'mobx-state-tree'\nimport { nanoid } from '../nanoid'\n\nexport const ElementId = types.optional(types.identifier, () => nanoid())\n\nexport const NoAssemblyRegion = types\n .model('NoAssemblyRegion', {\n refName: types.string,\n start: types.number,\n end: types.number,\n reversed: types.optional(types.boolean, false),\n })\n .actions(self => ({\n setRefName(newRefName: string): void {\n self.refName = newRefName\n },\n }))\n\nexport const Region = types.compose(\n 'Region',\n NoAssemblyRegion,\n types.model({\n assemblyName: types.string,\n }),\n)\n\nexport const LocalPathLocation = types.model('LocalPathLocation', {\n locationType: types.literal('LocalPathLocation'),\n localPath: types.string,\n})\n\n// like how blobId is used to get a blob map\nexport const BlobLocation = types.model('BlobLocation', {\n locationType: types.literal('BlobLocation'),\n name: types.string,\n blobId: types.string,\n})\n\nexport const UriLocationRaw = types.model('UriLocation', {\n locationType: types.literal('UriLocation'),\n uri: types.string,\n baseUri: types.maybe(types.string),\n\n internetAccountId: types.maybe(types.string),\n\n // auths information (such as tokens) needed for using this resource.\n // if provided, these must be completely sufficient for using it\n internetAccountPreAuthorization: types.maybe(\n types.model('InternetAccountPreAuthorization', {\n internetAccountType: types.string,\n authInfo: types.frozen(),\n }),\n ),\n})\n\nexport const UriLocation = types.snapshotProcessor(UriLocationRaw, {\n postProcessor: snap => {\n // xref https://github.com/mobxjs/mobx-state-tree/issues/1524 for Omit\n const { baseUri, ...rest } = snap as Omit\n if (!baseUri) {\n return rest\n }\n return snap\n },\n})\n\nexport const FileLocation = types.snapshotProcessor(\n types.union(LocalPathLocation, UriLocation, BlobLocation),\n {\n // @ts-expect-error\n preProcessor(snap) {\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n if (!snap) {\n return undefined\n }\n\n // @ts-expect-error\n // xref https://github.com/mobxjs/mobx-state-tree/issues/1524 for Omit\n const { locationType, ...rest } = snap as Omit\n if (!locationType) {\n // @ts-expect-error\n const { uri, localPath, blob } = rest\n let locationType = ''\n if (uri !== undefined) {\n locationType = 'UriLocation'\n } else if (localPath !== undefined) {\n locationType = 'LocalPathLocation'\n } else if (blob !== undefined) {\n locationType = 'BlobLocation'\n }\n\n return { ...rest, locationType }\n }\n return snap\n },\n },\n)\n","import { lazy } from 'react'\nimport Plugin from '@jbrowse/core/Plugin'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport UCSCTrackHubConnectionF from './ucsc-trackhub'\nimport AddTrackWidgetF from './AddTrackWidget'\n\nimport AddConnectionWidgetF from './AddConnectionWidget'\nimport PluginStoreWidgetF from './PluginStoreWidget'\nimport HierarchicalTrackSelectorWidgetF from './HierarchicalTrackSelectorWidget'\n\nconst AssemblyManager = lazy(() => import('./AssemblyManager'))\n\nexport default class DataManagementPlugin extends Plugin {\n name = 'DataManagementPlugin'\n\n exports = {\n AssemblyManager,\n }\n\n install(pluginManager: PluginManager) {\n UCSCTrackHubConnectionF(pluginManager)\n AddTrackWidgetF(pluginManager)\n HierarchicalTrackSelectorWidgetF(pluginManager)\n AddConnectionWidgetF(pluginManager)\n PluginStoreWidgetF(pluginManager)\n }\n\n configure(_pluginManager: PluginManager) {}\n}\n\nexport { AssemblyManager }\n\nexport { type AddTrackModel } from './AddTrackWidget/model'\nexport { type HierarchicalTrackSelectorModel } from './HierarchicalTrackSelectorWidget'\n","import domLoadScript from 'load-script'\n\n// locals\nimport Plugin, { PluginConstructor } from './Plugin'\nimport ReExports from './ReExports'\nimport { isElectron } from './util'\n\nexport interface UMDLocPluginDefinition {\n umdLoc: {\n uri: string\n baseUri?: string\n }\n name: string\n}\n\nexport interface UMDUrlPluginDefinition {\n umdUrl: string\n name: string\n}\n\nexport interface LegacyUMDPluginDefinition {\n url: string\n name: string\n}\n\ntype UMDPluginDefinition = UMDLocPluginDefinition | UMDUrlPluginDefinition\n\nexport function isUMDPluginDefinition(\n def: PluginDefinition,\n): def is UMDPluginDefinition | LegacyUMDPluginDefinition {\n return (\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n ((def as UMDUrlPluginDefinition).umdUrl !== undefined ||\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n (def as LegacyUMDPluginDefinition).url !== undefined ||\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n (def as UMDLocPluginDefinition).umdLoc !== undefined) &&\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n (def as LegacyUMDPluginDefinition | UMDPluginDefinition).name !== undefined\n )\n}\n\nexport interface ESMLocPluginDefinition {\n esmLoc: {\n uri: string\n baseUri?: string\n }\n}\nexport interface ESMUrlPluginDefinition {\n esmUrl: string\n}\n\nexport type ESMPluginDefinition =\n | ESMLocPluginDefinition\n | ESMUrlPluginDefinition\n\nexport function isESMPluginDefinition(\n def: PluginDefinition,\n): def is ESMPluginDefinition {\n return (\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n (def as ESMUrlPluginDefinition).esmUrl !== undefined ||\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n (def as ESMLocPluginDefinition).esmLoc !== undefined\n )\n}\n\nexport interface CJSPluginDefinition {\n cjsUrl: string\n}\n\nfunction promisifiedLoadScript(src: string) {\n return new Promise((resolve, reject) => {\n domLoadScript(src, (err, script) => {\n if (err) {\n reject(err)\n } else {\n resolve(script.src)\n }\n })\n })\n}\n\nasync function loadScript(scriptUrl: string) {\n if (!isInWebWorker()) {\n return promisifiedLoadScript(scriptUrl)\n }\n\n // @ts-expect-error\n if (globalThis.importScripts) {\n // @ts-expect-error\n await globalThis.importScripts(scriptUrl)\n return\n }\n throw new Error(\n 'cannot figure out how to load external JS scripts in this environment',\n )\n}\n\nexport function isCJSPluginDefinition(\n def: PluginDefinition,\n): def is CJSPluginDefinition {\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n return (def as CJSPluginDefinition).cjsUrl !== undefined\n}\n\nexport type PluginDefinition =\n | UMDUrlPluginDefinition\n | UMDLocPluginDefinition\n | LegacyUMDPluginDefinition\n | ESMLocPluginDefinition\n | ESMUrlPluginDefinition\n | CJSPluginDefinition\n\nexport interface PluginRecord {\n plugin: PluginConstructor\n definition: PluginDefinition\n}\n\nexport interface LoadedPlugin {\n default: PluginConstructor\n}\n\nexport function pluginDescriptionString(pluginDefinition: PluginDefinition) {\n if (isUMDPluginDefinition(pluginDefinition)) {\n return `UMD plugin ${pluginDefinition.name}`\n }\n if (isESMPluginDefinition(pluginDefinition)) {\n return `ESM plugin ${\n (pluginDefinition as ESMUrlPluginDefinition).esmUrl ||\n (pluginDefinition as ESMLocPluginDefinition).esmLoc.uri\n }`\n }\n if (isCJSPluginDefinition(pluginDefinition)) {\n return `CJS plugin ${pluginDefinition.cjsUrl}`\n }\n return 'unknown plugin'\n}\n\nfunction isInWebWorker() {\n return Boolean('WorkerGlobalScope' in globalThis)\n}\n\nexport default class PluginLoader {\n definitions: PluginDefinition[] = []\n\n fetchESM?: (url: string) => Promise\n fetchCJS?: (url: string) => Promise\n\n constructor(\n defs: PluginDefinition[] = [],\n args?: {\n fetchESM?: (url: string) => Promise\n fetchCJS?: (url: string) => Promise\n },\n ) {\n this.fetchESM = args?.fetchESM\n this.fetchCJS = args?.fetchCJS\n this.definitions = JSON.parse(JSON.stringify(defs))\n }\n\n async loadCJSPlugin(def: CJSPluginDefinition, baseUri?: string) {\n const parsedUrl = new URL(def.cjsUrl, baseUri)\n if (parsedUrl.protocol !== 'http:' && parsedUrl.protocol !== 'https:') {\n throw new Error(\n `Cannot load plugins using protocol \"${parsedUrl.protocol}\"`,\n )\n }\n if (!this.fetchCJS) {\n throw new Error('No fetchCJS callback provided')\n }\n\n return this.fetchCJS(parsedUrl.href)\n }\n\n async loadESMPlugin(def: ESMPluginDefinition, baseUri?: string) {\n const parsedUrl =\n 'esmUrl' in def\n ? new URL(def.esmUrl, baseUri)\n : new URL(def.esmLoc.uri, def.esmLoc.baseUri)\n\n if (parsedUrl.protocol !== 'http:' && parsedUrl.protocol !== 'https:') {\n throw new Error(\n `cannot load plugins using protocol \"${parsedUrl.protocol}\"`,\n )\n }\n\n if (!this.fetchESM) {\n throw new Error('No ESM fetcher installed')\n }\n const plugin = await this.fetchESM(parsedUrl.href)\n\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n if (!plugin) {\n throw new Error(`Could not load ESM plugin: ${parsedUrl}`)\n }\n return plugin\n }\n\n async loadUMDPlugin(\n def: UMDPluginDefinition | LegacyUMDPluginDefinition,\n baseUri?: string,\n ) {\n const parsedUrl =\n 'url' in def\n ? new URL(def.url, baseUri)\n : 'umdUrl' in def\n ? new URL(def.umdUrl, baseUri)\n : new URL(def.umdLoc.uri, def.umdLoc.baseUri)\n\n if (parsedUrl.protocol !== 'http:' && parsedUrl.protocol !== 'https:') {\n throw new Error(\n `cannot load plugins using protocol \"${parsedUrl.protocol}\"`,\n )\n }\n const moduleName = def.name\n const umdName = `JBrowsePlugin${moduleName}`\n if (typeof jest === 'undefined') {\n await loadScript(parsedUrl.href)\n } else {\n // @ts-expect-error\n globalThis[umdName] = { default: Plugin }\n }\n\n // @ts-expect-error\n const plugin = globalThis[umdName] as\n | { default: PluginConstructor }\n | undefined\n if (!plugin) {\n throw new Error(\n `Failed to load UMD bundle for ${moduleName}, ${umdName} is undefined`,\n )\n }\n return plugin\n }\n\n async loadPlugin(def: PluginDefinition, baseUri?: string) {\n let plugin: LoadedPlugin\n if (isElectron && isCJSPluginDefinition(def)) {\n plugin = await this.loadCJSPlugin(def, baseUri)\n } else if (isESMPluginDefinition(def)) {\n plugin = await this.loadESMPlugin(def, baseUri)\n } else if (isUMDPluginDefinition(def)) {\n plugin = await this.loadUMDPlugin(def, baseUri)\n } else if (!isElectron && isCJSPluginDefinition(def)) {\n throw new Error(\n `CommonJS plugin found, but not in a NodeJS environment: ${JSON.stringify(\n def,\n )}`,\n )\n } else {\n throw new Error(`Could not determine plugin type: ${JSON.stringify(def)}`)\n }\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n if (!plugin.default) {\n throw new Error(\n `${pluginDescriptionString(\n def,\n )} does not have a default export, cannot load`,\n )\n }\n return plugin.default\n }\n\n installGlobalReExports(target: WindowOrWorkerGlobalScope) {\n // @ts-expect-error\n target.JBrowseExports = Object.fromEntries(\n Object.entries(ReExports).map(([moduleName, module]) => {\n return [moduleName, module]\n }),\n )\n return this\n }\n\n async load(baseUri?: string) {\n return Promise.all(\n this.definitions.map(async definition => ({\n plugin: await this.loadPlugin(definition, baseUri),\n definition,\n })),\n )\n }\n}\n","import './workerPolyfill'\nimport { initializeWorker } from '@jbrowse/product-core'\nimport { enableStaticRendering } from 'mobx-react'\n\n// locals\nimport corePlugins from './corePlugins'\n\n// static rendering is used for \"SSR\" style rendering which is done on the\n// worker\nenableStaticRendering(true)\n\n// eslint-disable-next-line @typescript-eslint/no-floating-promises\ninitializeWorker(corePlugins, {\n fetchESM: url => import(/* webpackIgnore:true */ url),\n})\n\nexport default function doNothing() {\n /* do nothing */\n}\n","import RpcServer from 'librpc-web-mod'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { remoteAbortRpcHandler } from '@jbrowse/core/rpc/remoteAbortSignals'\nimport PluginLoader, {\n LoadedPlugin,\n PluginDefinition,\n} from '@jbrowse/core/PluginLoader'\nimport { PluginConstructor } from '@jbrowse/core/Plugin'\nimport { serializeError } from 'serialize-error'\n\ninterface WorkerConfiguration {\n plugins: PluginDefinition[]\n windowHref: string\n}\n\n// waits for a message from the main thread containing our configuration, which\n// must be sent on boot\nfunction receiveConfiguration() {\n const configurationP = new Promise(resolve => {\n function listener(e: MessageEvent) {\n if (e.data.message === 'config') {\n resolve(e.data.config as WorkerConfiguration)\n removeEventListener('message', listener)\n }\n }\n self.addEventListener('message', listener)\n })\n postMessage({ message: 'readyForConfig' })\n return configurationP\n}\n\nasync function getPluginManager(\n corePlugins: PluginConstructor[],\n opts: { fetchESM?: (url: string) => Promise },\n) {\n // Load runtime plugins\n const config = await receiveConfiguration()\n const pluginLoader = new PluginLoader(\n config.plugins,\n opts,\n ).installGlobalReExports(self)\n return new PluginManager(\n [\n ...corePlugins.map(p => ({ plugin: p })),\n ...(await pluginLoader.load(config.windowHref)),\n ].map(P => new P.plugin()),\n )\n .createPluggableElements()\n .configure()\n}\n\ninterface WrappedFuncArgs {\n rpcDriverClassName: string\n channel: string\n [key: string]: unknown\n}\n\ntype RpcFunc = (args: unknown, rpcDriverClassName: string) => unknown\n\nfunction wrapForRpc(func: RpcFunc) {\n return (args: WrappedFuncArgs) => {\n const { channel, rpcDriverClassName } = args\n return func(\n {\n ...args,\n statusCallback: (message: string) => {\n // @ts-expect-error\n self.rpcServer.emit(channel, message)\n },\n },\n rpcDriverClassName,\n )\n }\n}\n\nexport async function initializeWorker(\n corePlugins: PluginConstructor[],\n opts: {\n fetchESM?: (url: string) => Promise\n fetchCJS?: (url: string) => Promise\n },\n) {\n try {\n const pluginManager = await getPluginManager(corePlugins, opts)\n const rpcConfig = Object.fromEntries(\n pluginManager\n .getRpcElements()\n .map(e => [e.name, wrapForRpc(e.execute.bind(e))]),\n )\n\n // @ts-expect-error\n self.rpcServer = new RpcServer.Server({\n ...rpcConfig,\n ...remoteAbortRpcHandler(),\n ping: async () => {\n // the ping method is required by the worker driver for checking the\n // health of the worker\n },\n })\n postMessage({ message: 'ready' })\n } catch (e) {\n postMessage({ message: 'error', error: serializeError(e) })\n }\n /* do nothing */\n}\n","// this is a little polyfill for running in workers that\n// contains just enough stubbing to make webpack style-loader\n// think that it is actually inserting styles into the DOM\n\nself.window = {\n addEventListener() {},\n fetch: self.fetch.bind(self),\n location: self.location,\n Date: self.Date,\n requestIdleCallback: cb => {\n cb()\n },\n cancelIdleCallback: () => {},\n requestAnimationFrame: cb => {\n cb()\n },\n cancelAnimationFrame: () => {},\n navigator: {},\n}\nself.document = {\n createTextNode() {},\n querySelector() {\n return { appendChild() {} }\n },\n documentElement: {},\n querySelectorAll: () => [],\n createElement() {\n return {\n style: {},\n setAttribute() {},\n removeAttribute() {},\n appendChild() {},\n }\n },\n}\n","// The module cache\nvar __webpack_module_cache__ = {};\n\n// The require function\nfunction __webpack_require__(moduleId) {\n\t// Check if module is in cache\n\tvar cachedModule = __webpack_module_cache__[moduleId];\n\tif (cachedModule !== undefined) {\n\t\treturn cachedModule.exports;\n\t}\n\t// Create a new module (and put it into the cache)\n\tvar module = __webpack_module_cache__[moduleId] = {\n\t\t// no module.id needed\n\t\t// no module.loaded needed\n\t\texports: {}\n\t};\n\n\t// Execute the module 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* as React from 'react';\n/**\n * Provides information about the current step in Stepper.\n */\nconst StepContext = /*#__PURE__*/React.createContext({});\nif (process.env.NODE_ENV !== 'production') {\n StepContext.displayName = 'StepContext';\n}\n\n/**\n * Returns the current StepContext or an empty object if no StepContext\n * has been defined in the component tree.\n */\nexport function useStepContext() {\n return React.useContext(StepContext);\n}\nexport default StepContext;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getStepButtonUtilityClass(slot) {\n return generateUtilityClass('MuiStepButton', slot);\n}\nconst stepButtonClasses = generateUtilityClasses('MuiStepButton', ['root', 'horizontal', 'vertical', 'touchRipple']);\nexport default stepButtonClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport StepLabel from \"../StepLabel/index.js\";\nimport isMuiElement from \"../utils/isMuiElement.js\";\nimport StepperContext from \"../Stepper/StepperContext.js\";\nimport StepContext from \"../Step/StepContext.js\";\nimport stepButtonClasses, { getStepButtonUtilityClass } from \"./stepButtonClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n orientation\n } = ownerState;\n const slots = {\n root: ['root', orientation],\n touchRipple: ['touchRipple']\n };\n return composeClasses(slots, getStepButtonUtilityClass, classes);\n};\nconst StepButtonRoot = styled(ButtonBase, {\n name: 'MuiStepButton',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [{\n [`& .${stepButtonClasses.touchRipple}`]: styles.touchRipple\n }, styles.root, styles[ownerState.orientation]];\n }\n})({\n width: '100%',\n padding: '24px 16px',\n margin: '-24px -16px',\n boxSizing: 'content-box',\n [`& .${stepButtonClasses.touchRipple}`]: {\n color: 'rgba(0, 0, 0, 0.3)'\n },\n variants: [{\n props: {\n orientation: 'vertical'\n },\n style: {\n justifyContent: 'flex-start',\n padding: '8px',\n margin: '-8px'\n }\n }]\n});\nconst StepButton = /*#__PURE__*/React.forwardRef(function StepButton(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiStepButton'\n });\n const {\n children,\n className,\n icon,\n optional,\n ...other\n } = props;\n const {\n disabled,\n active\n } = React.useContext(StepContext);\n const {\n orientation\n } = React.useContext(StepperContext);\n const ownerState = {\n ...props,\n orientation\n };\n const classes = useUtilityClasses(ownerState);\n const childProps = {\n icon,\n optional\n };\n const child = isMuiElement(children, ['StepLabel']) ? (/*#__PURE__*/React.cloneElement(children, childProps)) : /*#__PURE__*/_jsx(StepLabel, {\n ...childProps,\n children: children\n });\n return /*#__PURE__*/_jsx(StepButtonRoot, {\n focusRipple: true,\n disabled: disabled,\n TouchRippleProps: {\n className: classes.touchRipple\n },\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n \"aria-current\": active ? 'step' : undefined,\n ...other,\n children: child\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? StepButton.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Can be a `StepLabel` or a node to place inside `StepLabel` as children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The icon displayed by the step label.\n */\n icon: PropTypes.node,\n /**\n * The optional node to display.\n */\n optional: PropTypes.node,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default StepButton;","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M12 0a12 12 0 1 0 0 24 12 12 0 0 0 0-24zm-2 17l-5-5 1.4-1.4 3.6 3.6 7.6-7.6L19 8l-9 9z\"\n}), 'CheckCircle');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M1 21h22L12 2 1 21zm12-3h-2v-2h2v2zm0-4h-2v-4h2v4z\"\n}), 'Warning');","'use client';\n\nvar _circle;\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport CheckCircle from \"../internal/svg-icons/CheckCircle.js\";\nimport Warning from \"../internal/svg-icons/Warning.js\";\nimport SvgIcon from \"../SvgIcon/index.js\";\nimport stepIconClasses, { getStepIconUtilityClass } from \"./stepIconClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n active,\n completed,\n error\n } = ownerState;\n const slots = {\n root: ['root', active && 'active', completed && 'completed', error && 'error'],\n text: ['text']\n };\n return composeClasses(slots, getStepIconUtilityClass, classes);\n};\nconst StepIconRoot = styled(SvgIcon, {\n name: 'MuiStepIcon',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => ({\n display: 'block',\n transition: theme.transitions.create('color', {\n duration: theme.transitions.duration.shortest\n }),\n color: (theme.vars || theme).palette.text.disabled,\n [`&.${stepIconClasses.completed}`]: {\n color: (theme.vars || theme).palette.primary.main\n },\n [`&.${stepIconClasses.active}`]: {\n color: (theme.vars || theme).palette.primary.main\n },\n [`&.${stepIconClasses.error}`]: {\n color: (theme.vars || theme).palette.error.main\n }\n})));\nconst StepIconText = styled('text', {\n name: 'MuiStepIcon',\n slot: 'Text',\n overridesResolver: (props, styles) => styles.text\n})(memoTheme(({\n theme\n}) => ({\n fill: (theme.vars || theme).palette.primary.contrastText,\n fontSize: theme.typography.caption.fontSize,\n fontFamily: theme.typography.fontFamily\n})));\nconst StepIcon = /*#__PURE__*/React.forwardRef(function StepIcon(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiStepIcon'\n });\n const {\n active = false,\n className: classNameProp,\n completed = false,\n error = false,\n icon,\n ...other\n } = props;\n const ownerState = {\n ...props,\n active,\n completed,\n error\n };\n const classes = useUtilityClasses(ownerState);\n if (typeof icon === 'number' || typeof icon === 'string') {\n const className = clsx(classNameProp, classes.root);\n if (error) {\n return /*#__PURE__*/_jsx(StepIconRoot, {\n as: Warning,\n className: className,\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n }\n if (completed) {\n return /*#__PURE__*/_jsx(StepIconRoot, {\n as: CheckCircle,\n className: className,\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n }\n return /*#__PURE__*/_jsxs(StepIconRoot, {\n className: className,\n ref: ref,\n ownerState: ownerState,\n ...other,\n children: [_circle || (_circle = /*#__PURE__*/_jsx(\"circle\", {\n cx: \"12\",\n cy: \"12\",\n r: \"12\"\n })), /*#__PURE__*/_jsx(StepIconText, {\n className: classes.text,\n x: \"12\",\n y: \"12\",\n textAnchor: \"middle\",\n dominantBaseline: \"central\",\n ownerState: ownerState,\n children: icon\n })]\n });\n }\n return icon;\n});\nprocess.env.NODE_ENV !== \"production\" ? StepIcon.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Whether this step is active.\n * @default false\n */\n active: PropTypes.bool,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * Mark the step as completed. Is passed to child components.\n * @default false\n */\n completed: PropTypes.bool,\n /**\n * If `true`, the step is marked as failed.\n * @default false\n */\n error: PropTypes.bool,\n /**\n * The label displayed in the step icon.\n */\n icon: PropTypes.node,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default StepIcon;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getStepIconUtilityClass(slot) {\n return generateUtilityClass('MuiStepIcon', slot);\n}\nconst stepIconClasses = generateUtilityClasses('MuiStepIcon', ['root', 'active', 'completed', 'error', 'text']);\nexport default stepIconClasses;","'use client';\n\nimport composeClasses from '@mui/utils/composeClasses';\nimport clsx from 'clsx';\nimport PropTypes from 'prop-types';\nimport * as React from 'react';\nimport StepContext from \"../Step/StepContext.js\";\nimport StepIcon from \"../StepIcon/index.js\";\nimport StepperContext from \"../Stepper/StepperContext.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport stepLabelClasses, { getStepLabelUtilityClass } from \"./stepLabelClasses.js\";\nimport useSlot from \"../utils/useSlot.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n orientation,\n active,\n completed,\n error,\n disabled,\n alternativeLabel\n } = ownerState;\n const slots = {\n root: ['root', orientation, error && 'error', disabled && 'disabled', alternativeLabel && 'alternativeLabel'],\n label: ['label', active && 'active', completed && 'completed', error && 'error', disabled && 'disabled', alternativeLabel && 'alternativeLabel'],\n iconContainer: ['iconContainer', active && 'active', completed && 'completed', error && 'error', disabled && 'disabled', alternativeLabel && 'alternativeLabel'],\n labelContainer: ['labelContainer', alternativeLabel && 'alternativeLabel']\n };\n return composeClasses(slots, getStepLabelUtilityClass, classes);\n};\nconst StepLabelRoot = styled('span', {\n name: 'MuiStepLabel',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.orientation]];\n }\n})({\n display: 'flex',\n alignItems: 'center',\n [`&.${stepLabelClasses.alternativeLabel}`]: {\n flexDirection: 'column'\n },\n [`&.${stepLabelClasses.disabled}`]: {\n cursor: 'default'\n },\n variants: [{\n props: {\n orientation: 'vertical'\n },\n style: {\n textAlign: 'left',\n padding: '8px 0'\n }\n }]\n});\nconst StepLabelLabel = styled('span', {\n name: 'MuiStepLabel',\n slot: 'Label',\n overridesResolver: (props, styles) => styles.label\n})(memoTheme(({\n theme\n}) => ({\n ...theme.typography.body2,\n display: 'block',\n transition: theme.transitions.create('color', {\n duration: theme.transitions.duration.shortest\n }),\n [`&.${stepLabelClasses.active}`]: {\n color: (theme.vars || theme).palette.text.primary,\n fontWeight: 500\n },\n [`&.${stepLabelClasses.completed}`]: {\n color: (theme.vars || theme).palette.text.primary,\n fontWeight: 500\n },\n [`&.${stepLabelClasses.alternativeLabel}`]: {\n marginTop: 16\n },\n [`&.${stepLabelClasses.error}`]: {\n color: (theme.vars || theme).palette.error.main\n }\n})));\nconst StepLabelIconContainer = styled('span', {\n name: 'MuiStepLabel',\n slot: 'IconContainer',\n overridesResolver: (props, styles) => styles.iconContainer\n})({\n flexShrink: 0,\n display: 'flex',\n paddingRight: 8,\n [`&.${stepLabelClasses.alternativeLabel}`]: {\n paddingRight: 0\n }\n});\nconst StepLabelLabelContainer = styled('span', {\n name: 'MuiStepLabel',\n slot: 'LabelContainer',\n overridesResolver: (props, styles) => styles.labelContainer\n})(memoTheme(({\n theme\n}) => ({\n width: '100%',\n color: (theme.vars || theme).palette.text.secondary,\n [`&.${stepLabelClasses.alternativeLabel}`]: {\n textAlign: 'center'\n }\n})));\nconst StepLabel = /*#__PURE__*/React.forwardRef(function StepLabel(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiStepLabel'\n });\n const {\n children,\n className,\n componentsProps = {},\n error = false,\n icon: iconProp,\n optional,\n slots = {},\n slotProps = {},\n StepIconComponent: StepIconComponentProp,\n StepIconProps,\n ...other\n } = props;\n const {\n alternativeLabel,\n orientation\n } = React.useContext(StepperContext);\n const {\n active,\n disabled,\n completed,\n icon: iconContext\n } = React.useContext(StepContext);\n const icon = iconProp || iconContext;\n let StepIconComponent = StepIconComponentProp;\n if (icon && !StepIconComponent) {\n StepIconComponent = StepIcon;\n }\n const ownerState = {\n ...props,\n active,\n alternativeLabel,\n completed,\n disabled,\n error,\n orientation\n };\n const classes = useUtilityClasses(ownerState);\n const externalForwardedProps = {\n slots,\n slotProps: {\n stepIcon: StepIconProps,\n ...componentsProps,\n ...slotProps\n }\n };\n const [LabelSlot, labelProps] = useSlot('label', {\n elementType: StepLabelLabel,\n externalForwardedProps,\n ownerState\n });\n const [StepIconSlot, stepIconProps] = useSlot('stepIcon', {\n elementType: StepIconComponent,\n externalForwardedProps,\n ownerState\n });\n return /*#__PURE__*/_jsxs(StepLabelRoot, {\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other,\n children: [icon || StepIconSlot ? /*#__PURE__*/_jsx(StepLabelIconContainer, {\n className: classes.iconContainer,\n ownerState: ownerState,\n children: /*#__PURE__*/_jsx(StepIconSlot, {\n completed: completed,\n active: active,\n error: error,\n icon: icon,\n ...stepIconProps\n })\n }) : null, /*#__PURE__*/_jsxs(StepLabelLabelContainer, {\n className: classes.labelContainer,\n ownerState: ownerState,\n children: [children ? /*#__PURE__*/_jsx(LabelSlot, {\n ...labelProps,\n className: clsx(classes.label, labelProps?.className),\n children: children\n }) : null, optional]\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? StepLabel.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * In most cases will simply be a string containing a title for the label.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The props used for each slot inside.\n * @default {}\n * @deprecated use the `slotProps` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n */\n componentsProps: PropTypes.shape({\n label: PropTypes.object\n }),\n /**\n * If `true`, the step is marked as failed.\n * @default false\n */\n error: PropTypes.bool,\n /**\n * Override the default label of the step icon.\n */\n icon: PropTypes.node,\n /**\n * The optional node to display.\n */\n optional: PropTypes.node,\n /**\n * The props used for each slot inside.\n * @default {}\n */\n slotProps: PropTypes.shape({\n label: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n stepIcon: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside.\n * @default {}\n */\n slots: PropTypes.shape({\n label: PropTypes.elementType,\n stepIcon: PropTypes.elementType\n }),\n /**\n * The component to render in place of the [`StepIcon`](https://mui.com/material-ui/api/step-icon/).\n */\n StepIconComponent: PropTypes.elementType,\n /**\n * Props applied to the [`StepIcon`](https://mui.com/material-ui/api/step-icon/) element.\n */\n StepIconProps: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nif (StepLabel) {\n StepLabel.muiName = 'StepLabel';\n}\nexport default StepLabel;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getStepLabelUtilityClass(slot) {\n return generateUtilityClass('MuiStepLabel', slot);\n}\nconst stepLabelClasses = generateUtilityClasses('MuiStepLabel', ['root', 'horizontal', 'vertical', 'label', 'active', 'completed', 'error', 'disabled', 'iconContainer', 'alternativeLabel', 'labelContainer']);\nexport default stepLabelClasses;","import * as React from 'react';\n/**\n * Provides information about the current step in Stepper.\n */\nconst StepperContext = /*#__PURE__*/React.createContext({});\nif (process.env.NODE_ENV !== 'production') {\n StepperContext.displayName = 'StepperContext';\n}\n\n/**\n * Returns the current StepperContext or an empty object if no StepperContext\n * has been defined in the component tree.\n */\nexport function useStepperContext() {\n return React.useContext(StepperContext);\n}\nexport default StepperContext;"],"names":["StepContext","useStepContext","getStepButtonUtilityClass","slot","generateUtilityClass","generateUtilityClasses","StepButtonRoot","styled","ButtonBase","name","overridesResolver","props","styles","ownerState","touchRipple","root","orientation","width","padding","margin","boxSizing","color","variants","style","justifyContent","inProps","ref","children","className","icon","optional","other","disabled","active","StepperContext","classes","slots","composeClasses","useUtilityClasses","childProps","child","isMuiElement","StepLabel","focusRipple","TouchRippleProps","clsx","undefined","createSvgIcon","d","_circle","StepIconRoot","SvgIcon","memoTheme","theme","display","transition","transitions","create","duration","shortest","vars","palette","text","stepIconClasses","completed","primary","main","error","StepIconText","fill","contrastText","fontSize","typography","caption","fontFamily","classNameProp","as","Warning","CheckCircle","cx","cy","r","x","y","textAnchor","dominantBaseline","getStepIconUtilityClass","StepLabelRoot","alignItems","alternativeLabel","flexDirection","cursor","textAlign","StepLabelLabel","label","body2","fontWeight","marginTop","StepLabelIconContainer","iconContainer","flexShrink","paddingRight","StepLabelLabelContainer","labelContainer","secondary","componentsProps","iconProp","slotProps","StepIconComponent","StepIconComponentProp","StepIconProps","iconContext","externalForwardedProps","stepIcon","LabelSlot","labelProps","elementType","StepIconSlot","stepIconProps","muiName","getStepLabelUtilityClass","useStepperContext"],"sourceRoot":""} 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client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getCardMediaUtilityClass } from \"./cardMediaClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n isMediaComponent,\n isImageComponent\n } = ownerState;\n const slots = {\n root: ['root', isMediaComponent && 'media', isImageComponent && 'img']\n };\n return composeClasses(slots, getCardMediaUtilityClass, classes);\n};\nconst CardMediaRoot = styled('div', {\n name: 'MuiCardMedia',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n const {\n isMediaComponent,\n isImageComponent\n } = ownerState;\n return [styles.root, isMediaComponent && styles.media, isImageComponent && styles.img];\n }\n})({\n display: 'block',\n backgroundSize: 'cover',\n backgroundRepeat: 'no-repeat',\n backgroundPosition: 'center',\n variants: [{\n props: {\n isMediaComponent: true\n },\n style: {\n width: '100%'\n }\n }, {\n props: {\n isImageComponent: true\n },\n style: {\n objectFit: 'cover'\n }\n }]\n});\nconst MEDIA_COMPONENTS = ['video', 'audio', 'picture', 'iframe', 'img'];\nconst IMAGE_COMPONENTS = ['picture', 'img'];\nconst CardMedia = /*#__PURE__*/React.forwardRef(function CardMedia(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCardMedia'\n });\n const {\n children,\n className,\n component = 'div',\n image,\n src,\n style,\n ...other\n } = props;\n const isMediaComponent = MEDIA_COMPONENTS.includes(component);\n const composedStyle = !isMediaComponent && image ? {\n backgroundImage: `url(\"${image}\")`,\n ...style\n } : style;\n const ownerState = {\n ...props,\n component,\n isMediaComponent,\n isImageComponent: IMAGE_COMPONENTS.includes(component)\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(CardMediaRoot, {\n className: clsx(classes.root, className),\n as: component,\n role: !isMediaComponent && image ? 'img' : undefined,\n ref: ref,\n style: composedStyle,\n ownerState: ownerState,\n src: isMediaComponent ? image || src : undefined,\n ...other,\n children: children\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CardMedia.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: chainPropTypes(PropTypes.node, props => {\n if (!props.children && !props.image && !props.src && !props.component) {\n return new Error('MUI: Either `children`, `image`, `src` or `component` prop must be specified.');\n }\n return null;\n }),\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * Image to be displayed as a background image.\n * Either `image` or `src` prop must be specified.\n * Note that caller must specify height otherwise the image will not be visible.\n */\n image: PropTypes.string,\n /**\n * An alias for `image` property.\n * Available only with media components.\n * Media components: `video`, `audio`, `picture`, `iframe`, `img`.\n */\n src: PropTypes.string,\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default CardMedia;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCardMediaUtilityClass(slot) {\n return generateUtilityClass('MuiCardMedia', slot);\n}\nconst cardMediaClasses = generateUtilityClasses('MuiCardMedia', ['root', 'media', 'img']);\nexport default cardMediaClasses;"],"names":["CardMediaRoot","name","slot","overridesResolver","props","styles","ownerState","isMediaComponent","isImageComponent","root","media","img","display","backgroundSize","backgroundRepeat","backgroundPosition","variants","style","width","objectFit","MEDIA_COMPONENTS","IMAGE_COMPONENTS","inProps","ref","children","className","component","image","src","other","includes","composedStyle","backgroundImage","classes","slots","useUtilityClasses","as","role","undefined","getCardMediaUtilityClass"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/2189.3c65daf8.chunk.js --- a/x/static/js/2189.3c65daf8.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use 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",S="data:image/png;base64,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rcesContent":["export const emptyIcon =\n 'data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAMgAAACWCAMAAACsAjcrAAAAA3NCSVQICAjb4U/gAAAACXBIWXMAAHsIAAB7CAF4JB2hAAAAGXRFWHRTb2Z0d2FyZQB3d3cuaW5rc2NhcGUub3Jnm+48GgAAAEVQTFRFAAAACSRAElJkdhtk/60bDCQ/ElRgch5j/7EeEUFUSzRim3UsxHM7UTBjr4IoEUJUUjBi1oYwEURVDSM/E1Vgch5j/7Edkdc3HwAAABN0Uk5TABwcHBxVVVVVenp6er+/wMDAxLY4CkUAAAEKSURBVHja7ddbUsJAEEDRiBCiCIpI9r9URR6S+ZuuwmqGc3dwPm/XSZIkSVJ7zfqi2Z1C+q+iHgQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBOSBIE+L2l5KyOuytucbQBa76t6njvW+umUOyFQScKSBXEsijjyQP0nIkQhylsQcmSBHSdCRCnKQRB25ILvPj30bkM22DchmHLctQH4ccUkiyK8jLMkDOTmikjSQiyMoyQK5csQkSSATR0hyC0j9WK3GorcUY1XfUEKGO312EBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQEBAQkP9pPhTNO0mSJElqr2+Mch/wyKIo2gAAAABJRU5ErkJggg=='\n\nexport const linearGenomeViewIcon =\n 'data:image/png;base64,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const svInspectorIcon =\n 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OG8mSiJMFQ1MrdcqlDtesvlcgvNSmYn2qyQY6RNVGcjFVRzHSWTBI9S5cuTDzLV0ZDaFAsjUEojgKFgHb7Kx2QymTtSXIzb02PrjXHyqjwDQBDMSNEIgZGcgv7GYUWgCKajDLEapw3BSm3WzvUWDQv6Wbigt1J7VJhIEWAwd6v8jkNS21cQAQLRb1wEQQJ2NX0CfBRvwbJ/oTtXRX6zpdpigddfvCK/fPLHWCebeehspbdxprp1aXAh+c5BaBu+4VR+nJkTT+WIDu7x1l69Cb7jK3FWaoVeAGcdl8ogs/wo98QGo//3pT3Sr8DEf579++teMPHxX75++Yf/Ptr68vmTnlL4MNkSlRm66Yc1yy2eOH9zg5hTeNNDwbggN9hSvee5UsHec/P3YHDEb9lkUXGUbDG+ffj8FfoiChIrH/WuXwHto4715aE1fdMn956JXj2OcQ4zE6sslcFAMGex/f16C3mf3mo5fLYgq/LVn2+NgJNRAM4N69d7wTadrcvLN/X68Y3Bk+df/vYRdJgq31NcbAjguM6SbhJC3TX5VZ4ts9Z0YrJYqD4mgtTZKt+ClsQMLf6WUD0P46p4ACJwmNFpsnNysuWXa81OBlFayFscoYejLfI7cVf6ogxGTUNFGap01cv8hJBPOPkmJ4GaeWKpVl0SObS3JI+3Pu8//5OLcCIOg+HZaGsv6Fh1tB5fXos23V45Hh3/4QetANh/vTNESnjwwbzFk26mm4RQyFbIW9gUwaFcUg0aMC1k1rcYxckyMkRqUMroVdXZhAChaG8JN6mst8oIfhILagifp8YE5XvLSJEzNRZVVRDd9ZZ8QUFtBlVdNtpbMaqB9pb0jbdcOqfxcCs2f4LBVy9/cCU+cudeL4h2gKvTJ5p6QWLU0bTk2IjrN6aXHWfb+tsB+OeTxy9Sn8w6TxzIW7gE9UV2dArjBbxllyW9RgPJUmL8pObBd7xl1HmbdVO6pGjXW8f+2pjxViDlrZkp1Xxfgw8v4C3SMiP0BD1VtoxOg74p7wJFzlv6bB4zJ+Q26y6RXINb7trUHspb3z56DcCJs03R69M/DwN9O3CszOmv0NkK65eGPj1x4u5qeNERnkuAjvDQN1vNHFDfNWXaJ1uVqgbUSXsr4FWnvVXhzM+WVa6sIjHC7hMJNVZlJJutUEsj4ddJdao6TSggHcAHMFDk70nyM2OLMyBWVahcGq2sQcLMm4mGUImMoEijSi5LZ6tEpVLY3ELE1FynUWAUVSu0KYw2T53CZk8epsoznz7/Zg6Ak0th/eS1n44Ceg62rfXHJ0DHaJt+6frGnOPeeHh4LkzXM/3pxaGJz79QN05Z96vyDRT9kBaz8d3+LxOG8qs8LIYZNIUQjphVAjIgo7OFwEyIKQACiJ5lYo6/E4KYLIgO5VZ5BIboM1Pf8cir8kyIlhjCEsDVyO4LEASCEISmCFRSymDQZwgYrFJJubgIIIfxFvRiZfoyPcvmzkRPrd7YSPS2gqY74bl2usr3R6+fudk/eHfk8vgJxzqAw1fH9E1XRx8++iVyMG9le6fFSP73ApGS3d/A98TTz6b2REO5QVbRnhMETPitx/QLci8P9rwxDB/cWxz633V6bZweXB1nw/rFlXvRdj1oX1vu3wYTo6eiZ8+stA3fWBwf7A+3gytjg0MTjtnWHz/7VcV+/UQ81X018LKPd/WWOBdRnH28JcjzVvV78BYUI+hsbc9eGKQHV3wx7rhw66NEFHTcHJrsoLOlj49dvRCe3Vg890F4MgEmR4ZOxacd64OX/7ZVs89MlFmCwT5jRabhXgwd3FsF48ySA3sLzvcW653Wt2C/M9XAfPq71tSR484qPbgSZ4fi5+5ubMcBuLAUToD11fX4yOWLp1cuDp/TD82BiY8mj/euDm+HR6LrDNFT+O33xFgFz9pn4PKTnWlBWPn5Vb5cabDiPLS0Wa32syPlmWyJMVZNhQATi/jsGo6TDZjdZTADN/Cqc7JFM02qRbqrC+m02qUVqyG1tjjC322p8TEuF/N47Eq1WomrtTyDdgBzlbHQnkaGfz9vVW/6KHr+vh4b6aCPtq/dHqN/6kfmFj/9RVv0R2B2jM5WdLU9Pty2Nnbj9uyHTcf1YHmxf/L4xaboSFifODn5EGMeoJ/IJT/r3skWoirorZ4ujPSqpginkfKGsquE3jIqJFT4NZo+ZUguBEWalLdmyKy3StWmS0RQg/lEnXj+PdGko4QzJovZFoxkvWUj7wfNXoXxkhKT19Lech0L4a4+lQ7V7eMt+5Rv4RLjHwC0D19OHZ+enaYHF/hkafnmrY+jCXDtfLgDzI0nTo1Gb47fnb091DQ4of9wbqj/gmN7aSy6nejXMzF8n141l/bWwOZnEe73r2/xqyxdxuBCrVnTaa6bV+71lq7S4tT5dBZ011veB7neEigM813K+aC2kLd8NsuMqrYSpWQZbwV8Xd7/UXNuv2lkdxw/DDDcbJOBCLC9viX4AgRmPY4xa3wbYgWoHduT2OBJ4mFtGGwMhA7Bsa0Fz8TmEstxvE7snXTV1W6brXjYPmSb9qH71JeV+lypVaX2YVv1qf0nCja+Bexot1WljsQDI84Z6avf+Z7P/H6/wxhBbHR2EqN6pHZEZbzVLxlw97c+bn4Hb416NlW/++qfawCY02ThOx9JhVcBYMLUk/1PqDkQTgdvAioM2HXsUejpw0cs7Rv35+LZ9QxDzlNrc0PsHJDKL+StuwZDx6al68rGtZJaytpytVxNKqKlvm7UXd9Zf9U7eqKWvqr9WjNq86psVptn2CWeHARQx+CS6zi2xIsNKqXbZr1CXDaVsTw8YNMQs0Y3qmrpL2UDZSoVaiTqZXf0KpQwNBHD7n6rt765lTCalpTv8C255PPBr/7EhRkAyL0CSAH//E4xuBKZvZfbEQDsoTgPkh+C4Dq58tmL3Qc0e59KYtRK+h5fCC1Ak6sH5gef7/KjVqPRqhdL1NpS55RIJCx3c5FaoEEgtUghU9fAasGpvJdUIBcoRAUy6hapq2cb5XIRDAmO342LviUViiB5A4BEFXxLAEmFQNhQJaguPRSWw7AQgoWF1S/sViJIlRxSIBpdr1gtk8IX8RZUPDEjEn/zbcbBzTNg7n7YLAXs8nqs4Fyr0diLJytrYCtlxgAXAHjYnnq+v+2nE5z/JpZ+VADYaG6Vd4wfblPN2nNj6/A61awmAOBtCCrb+47uyyrsIALZqV8c4NPJqDLekp400BwNeKu95vR1kVqzHx3UgL/7F5UhuRgDxjNZzOkMB1LFJUmHtp/ubIHlEE87Y6TUx2Xs2y93ArR9nV/N7JIJNhdmGMfNw5nWvmttOI+3lAOFS/sDeUvxn/EW8t/jLRHaNI0WlTYHSX+Ci/WBvpiDHt/CF4rrEmR/8iycYtIZjDZH+nh7NpPdLrwmsik7cOxGWYr1U+NBpiQW/+M3tYWQ6boiKI8tW2eBt5p0J4cDvg9vyd51E5af5auz2/NhbJ11MvkP4y3E3f75K/j3fy4Ag4P1J6Pz94AjSmNUJpDKzRVgYuenMS62i2M89cBJUvZsaP/ZHh7b+9gRCSeSbCI8FeSPxHKamWttUKv1C3UFl5/oGuiZtoiNnhJBCJTKcpfvHlUqdTUGxKBztVVNdB+rCLdDA9Vwu2xRWeXSTCiAtFctEtaIJcgp37ozPNM8KbiEVOIt5PIk7BKZDFWD2iPe0vZ0d7dPTNTMmkyjOtNkdY3B1TgqgRZ7uiDD+bwllc68mtV+SfZJAZZgfb4MR+XtlJlOJxZiWNHonz2Pr2zz5il/xknhifju8xe7Mc4+v0f58GScs5Pmw3mYvjzGgL98Lfa8uiaqRBDV1VqPRfnqVukMjdzWX6l/a2bTQKDuTeMw2mTVH6uovV3TUqsnFtGmurvXrTYAoUXe2njPdFLz6ZlZ6vBY28Y6BsTlNR9TXYv+satT1e+9cUQQxNiI6lPPe5tG6y29wdha4C399FVLrceGTlzIWwIIev2HKTLuLMhF5raiuSTLYXzYF124ny8E1yc/j1CkdA2LBeKsb2pq5xdP9/cyKykay+QoajlQEuummcHGpfSP3nyNNJzHW1qvRXd3U6U+l7cgV4tnzOheqttoUqrqm8/ktyav13mnR9ENdLrjiLduf2o6VU9EWiwbt+5uoBV5a4nofDw8jDY32Y55a3rp9kdjhHFs+oOWG63w9RE3cYsQ9xIj+rHZi3nr0l/XsTxLMgW5KDKZIe9HuXF/lIrFcoyTjvxs3cn0rQZDeIJNAjyym05vhyIBaTBGZXML2OEM4xiPrTqHSMfy60uVeWu0sdHwgUVpXRotqaW9WoG3iPqmJhNa6+33uO96TuW3bFWNzTfq3F73COr2tCoVhmsAutzx+CS2ujq6R7QtbtRmvTFZVquGe90KYytaGE4cVV9lbrfHa2zqbnO76+oXjfX6/vq6affgMGFtfKy9mLfkfGaHWsUS9CpNFZiTI6n1LLmO27O+QCJI7W9TwJz3LeRyFMss4KGQPZvI5czBjN/vzx5O4MQwfm68YGthWvJreSXeqvWiqPe9Golp8oi3yr1bAMuVkKIKVoh0GuWARgmdqIWIICGkk9cgiFiurKltEwpFMAwdn+k84C1EIIOrD/y7zLfksBQBmuoaSIscDdBoEFkDAiChTNLbrRALZboqde8di7Jb1HAuQcguKw/EXs3tfOhkyCBD5wJ0Mpewp5IpbsG35R8Czp2nUcqML3BJykcOPRhPh/AMFV/msb1ILkMfzDJHx6fmpnK4z86svf/tNxV5q3gC4tS/mvxvcxDS75WDOFetib/9agR+U4TLeCjNA4yKk1mczZnJWGolHKbwgCMPuH3ch+PhPbYPZ+5n+dQTny+ey8YdoRjFHWIpRvJrbJLMJvJxbv6PrwUVeEtX7JFX/n/nt0S96Bc2wy/fv1fgdmb+IQnGWSrJkYng3BD3dAfP53P2AMO+SGOOYCjG0PG1SIJKf5Zcxsw+vz2SJu2HkRVg6SGKtbN8Mhb1xX7zjwqxddXj9Xrqa87EVnnutMKOfcDyJ19PAf5bLH/E5tLKLC8tcftZli97XvFzHm9Vvdq8IbM1OFmqsCNKkyv2OcAkYjGWwhg+8oChaR6ncuz2i4Q9k2Fxng6sJxL+Jwtcnvb7yNTDaJbnzTRlp/MMSXIOPBIOLC9k/w5Vcvlml6mt01LdrC/5lqBaUu7ymjsal07dLmtU6Ho1M3C1uLQSkZlul1I9WAWgO+rj6qu6YHGnVqKr2WXoEemElXgLXjRBWqmlB5mRHPGWxIIgXTNt6kGLZUJi6alS91gGJhSCxi6xoPEc3oJMi9cufVkEAJKK5wH7aLmY1kpHcriZD+wyIG8O2nE28zLAPiIZP8XtbfF0ZicUxTAqyIZ3QgHabGYp/qY5kOUS/lhgK8Kx+XMzNgXeGvitt9QcKFeV928JJ602FWpEhwnCOk3U6T3/Jub8fhJLzzjOLwUUVGCjqKjoODrgAPEIRwRUwIlK8BeOAu+ohy5yFAQk53hETgY5zCgcnfFHZmWWcWcme9Hd2KSbpr3oxbZ7s+lN08umbdJf6UX3tv0behx+zHRg5mJn055EE0/iuXjyfZ/38zzv93mXiu9VaodU7XSLWdOjjpKLt864ayzviWzumGruo0G4c3ehsYqnecDddeegyets9+hf85ax94HX4dXBx0aVWirVuY3u3qEZtxRWvY+3vvjTRv66OwMIHNMcRpgyJh8KZpJWJGFjQuenbHT6WTxy6ENswc0sumEPRy7NmIWyQVQsYYcohlhRnA6s4gzWxjY3mJKR/MtP3hkt1Y9n7xQJYqySt2pru1qXBp27PXrYO6cYXJzrai6859xZWhtUto2z2MrSPUE8jn7uNUEIdQ6JSzt33HqgXlis4t9a7PY+0PeqlfCNMm8NLs4uLrp0i+5jhre4PY5Rx6yrYVhtNO72vIe3vqOIAE3l58llisKtwUOGoKhIJp1dD2WvGzF+ANlPL6IEU+ZsIxE6SWToy2weA9YNLHlEWCAMJUkKCdjCiDnyKE/O51H0X0ZB5Uq8ZTLdHdSO3d8tn772VmpLBSsUapP7I1cX7OmE76lhQ4FatxZVCljZ1Sq+O7dU0hbn44+fv+6d9s8Y2rW6bh2jnlvcCm1Nd9fonB6Fu729NF0gHHUde2EdX9Xl8ji2YKfR5XQfS5f07W19z4fe2zudtwAGpVBIg1MoHo4DkvTFN/BMjooiqCWVR/AnLzKBZDqW29xM4lA2f5LGNBhuI5mFS0MrKT9K/yictoa3CQjFUcskyVZ0VPBWr5fJ8q4GcedCibfqKpmfK5kWDoklNRxTB1/LbeQ1NJSclH1yLV9iGu5V9WlL0aptrpVx38hbPBGno7lR0MGtkre4zTwRq75xTDggKh/XikQGmYhVKzFo+2QNQxJDU418TWUyidnidxDE9cb0anPwYxRiRzXMuiI2ookg8igeJbM5DW2DMAsUCOZ+dhqLprdXM6gVRZKWy2CeFAACo/aRwCqC2jPnO9FAKAag5atXXUHWxECFtvgNcrn81WXWxSbEB/PWB3lsvgdvSZ575X/+XYh41Z4iUYKRVx6iAJHLAPNDJBzHQdgHKHM0GHv6dIUgoGwM0vgD4Y39hJ+ptlFgC1P5rI/OJCKAjiDzxa9OYei3X1XyVsm39YPx1v/avyW7oYRlv7k4u4wg+SmSKV/Q5TyK27PmeAihY7GYHUXCudw6oJKJsyiB46thesr/KBvY/pRkCQg7sPusFJ4PXcSjsR0ftUJRYMOWfOQzB/7+jeC2Z433prb0TOXTJm241lbRGygQVHoDC8fG5V/FO2XrhIVTZOYvQfmW2TpJ0cl3/dRyeGWaquINlPCKvFX+dyGnwGYliCuh2quf6rwlVyzV/PaXq9HEUyZgNhxFAWKFcAqYk7HzZO7J4xUECZvxPAEyubMdoLFl8ahFsx4A1kt7CkWoKzpJUUTkyIfvhR7ZaOZBwAq6jKUs6Dei2X9/Xv9fWX7i7tr4iHbModsq8Cmvw1CZt2qbOPVCQxOHzxHwBYbmIROvsOi4d/mNMjZTpNU1dZRXYoekmfPGStQuaYe1Ahmn2krk9mvZYkHNENdUzltDw83DjfV9fPGQpLlRLu6TsbRyGU8sF4j4qtZq0Vrbdd/+9d+eJLbTkU+ffRJCsKmUFZ0nWX4cDYcyJ1HCDDC7BkwStO3ZCZVMJy1U1BpFoPmEj8pS1DLhA3uZwxzii6HFL5IYI04cR38x1rf1eht/s2OzNacsZK46haOyY6P3TMAzE23KkemmB/WzN45b2YX3qlllm+vmaB1rustZ3hN7j3vLZz5stnz8YGIEHri/xRdW8ta0Vz0xp/U4nJ7SDJnEPapzw23dDMkpHG4FPDrQ53XqOnVfj80ODlal02v1tv4qBfbOT4/OL8/OjgKpSXQlhaVwm+3o5dOHEAlNoTROBTRU9AUdiEfNIBDOgLx/fwfDUysIfRgKp2NINERj5NTk8rUsAWW1UhT1VV+VbiC/xT0k6/MWrZSCpir9rZ4Rx9aERNF4UwUfSD+TtqsLvMUZ1rng3bnBNVbdQk+Zt1oP5sq8Vat2Nru0i179QffCrLySt2a73Qcz0m6lTl+cxZAcj+ruu71tPUaOXjrq8MBjpi7pjVnjA/Vn3t139k6/+ytT3qSovfMnO/uffHkSswV8NjtAmAx+9jArmEchG6MmMI9d7BPrmaidSIfSFNi/hKjJK5A53w8kQpvx7aTPt+4LIADX5K8hQqP56a0K3mIqjAHvkMx1U1aaLjBW6TR7xpeUN9pE91T6g5sjXXqdrHgq61TM6KRtMx3Tu2tlbU3o/9FfCgdH1WpwDblhGPa26oWVLK/Tero8RveoQ1dXjJanf9gDw93jsNHpMA6OtC/dlg6ufd0JH3h0x+872Z9KQajGAjLx0OHls32I1DC1C47YjxK51SurVRNLBhi+z50dIshjWkBlwkl8/XIdQEjsMJjZPg9uhqEUhi1rmCVIbSAIQpvNgW+/eJu3pNeuEXUDv688FcWVVZIC18SWGAbGrwtAsUDY0TQmKDL+mqFF1Hy3U7pw21TmLZGkUfg6bwnYfK5MZOLJJFXylrCexxc0mPoNSzXlOpHFrReZFlq0/UyJaGpZUHb2j7FbOPwGcaOy9V3RKnyXvMqjEP44tBM/uYhpLJN+q30vGY3nMhSgg8kriGSBFy9t1DJCWINmgCOhIEYEQDaZ3dmmw6CYs/JWgk4mEbBB2P7487e1VdOi1Wob3rjT4nt5mgX/T09zHZt7659kSWJM4lk9TDx5erJnRZepuAbfO9pMph8CewrTkNDZSSbPIunYJuJHM5mjLIFeEYH9XIbOQsv+61gxFSMCrJQdQQD6+3u8t/zyhef984nNP9R8Yv2HzSdW5a3aW7sjNX9YpZENPF9AS0Zhtsjp2cXpdn4lNEUg6dNwLGtH7QIUUC+/pMGVBvWFCIz1H+bO7Smt/Yrjm/tFQEEGMEoEgycHIjKiEITIxTgqo2hIItutcVtFFARkuIgY2UIUNmBUKoKcZKJN7ERn2hlfmj5kcl46/Q/a0zPTmb60f0Snj+Xm5QQ87fSpW8fBH+NiZvn7rfX5rb2+v20IZayPhgBoKbQCawzzefn4RD86q0kUHOWbGJov/u++nltzpTv7DAL9Uv9aW/t6rcUgVzSul9rX0uvieakV6QT1a+0rGbjir2rtK7li7oYWg1zSXuBLJ6+Sy4aB8sfU7A3Erf59jPu9TQ/BifALAyQt9iKtD0r7s4e5w3TMXkhwsCPX74ULm0g55Fz7zu1bmBiKuFDI53Y40oPAeMDvyEpRKO+NOLMedNE2Mf4zXSMDyzpBqpMw2l45PgNPrFWX52GYOAoDw6cCCjKF2KioLDq8Ak+nARwsicJvpPKo5UEKjnizLk8YJnSSgJIasLou300i8wEagcq7qsszFVQqjVdP1NJoaj6NhCMSFHVqJsCgccjdtaI8eWbkSd0PhgBUSPoFCC9ktYi3tKa2kpn9D2kNnLBas0jea4DjMGTXH7yx2fReCIWydn0WCqE2mwaxr8CeBBpfcgf0+fWbpvnkqg7wxmIH+PD2y4o+kcqqPuEAO2phK9lt4Ldd6s5txaRKJsGVc2K3Sd0noa82WfqEyscydjkntlsG1FdhiNwoeNWTUjakntOw1byl7pIIVuvvNLPAqcue5hFTU9vYpFBpkYBGcWufSAiywBGtDjS2PlTWnFsvTcbGH+L2bAyJ2e1rbveax2kNyKVSCLXmLj7sbkVfT8udLl8knAhH3Zp4LgDYYGgtbNDEs/lfRCFnzO9wOJ02H5oYBOYnbHLv+vrQuXcz/0j6j0+Y2uoC9dvPHZWKzXANb01NGnWPOS1akbh1u/1V89MUsTznMGae1qh627INSjbExntlb029XL3mrb4WjrDbBLaNNT+xEKp5q0sIbguMfWzZ3CVvSVKm3rGUcdICmsyjIkqPWSJKGevFsqmWyfaa9a1GPEBR/bmIEI/0AcPsmivmCPodK2HUE9kKvjv7mF6AJqBgTA9BqAMNw0cOMmCI2Te90E5wIZCctR8lowbN60WD3Kv35fOFfVNhnvrk0nx+808tVXNLzOA1WDqfjW303H73FUezCMRzPTL+wLLqLWuj1wLyK7nS2Glp69kGLRKxiS0Ulb3Vdu9X17wlaFcUvaW0pKZU/Bq102FL8WZ0Xwt4yVutktUNMPWwo0sGsnSSAVarqndDpBawLLr36tvqW/ibWrChiekFV+hg7wBBkKg1fXbmRw1hQ8jp9bn80LoteOiTu13WvM+GhvzuvR10xblkXYp5Fos7zIBPLpf7iry1GPHJf/fpa94yFnjLIuMR2FNXcYtRY594l6po/GaUTmcC9XgFfeZhhbcAnmJUh6E3LnMZ2rontHLcovPVnOu4hcFwKQzSMypDUasPgoTnYrpnxKSOzqs+CG4nV1sP8Bt5z0frH4pJ9csP7s6xxTo1bvi/6wBfP7cFIlLIebx/aI+iCU3m4qPHGo8jSwsxVHMOLOZCr+EoUghiAasngKQdLo11BzmwDxX5tlgf2xw8Hz+fkE9Hfvml6esoz2hQq9X1pOunl/4fa/Zv79+i/rXiqcG8XB9YtE0nrFGXPzsb21pZScdOTz0GFPGHYhrUIPdlvnOvBDWLem8/HIxDmd34BARF447ZRf2jwfV5r62UVYu2xr8IboJkibfK55FdX7XOg1DcwluK/zT48+dBEKt5TcH8n86DWP4DvIBa3c4Vuz2GII50MuTYCsUDrmA4seNPpz+c7brDW4cIOhsLhpLvHE6H04AWAG2pfzqYcUYWd1Ab6grDkU1ysQBrkw/Ol6z+UzylkhFuajE6SsoVxtWjhBlYTNWFYxZ+FPCo+FUmpuJvGAyWUxwvfVeGLwcvLybuxjsYDIf6U8P8sp2y4as/uPowfMV65QXmlrNGyMP0L3/zxGcLWBmOb6UPjvf8QQQ5OHLDETQKSQ1wxJm8yKHZ4FHM41/rf5HJOV1x1OpcS3gM8JuPLwppUWODNQGvLRDwFSuwg3LbRJEk7nHBz+87fhLlVQJ2T6qTJBi9qstja+h8iFgCHVdHpmEpHCaPw6HQGMUnRBTGyXwKto6MxzEJNB6/vBKxGOxNnQ+NR6MrysLp6r5TkgIgAkwF/rKSj6PiKBgMpbGRSmAyeRRKAb4UFA6PCNCYOHLtLt1u869T2k8TPoM7FtrNZDK7e+mgP3l8up9B7PFodueFOwzZZt+dfNjLJkNRjdS3dehMPBrKw46oG40c5WK+hB+xQhpNODKdsG+5ov22fGFB5wepIxTF/XpODcXdzOrqk0r/FqtGDaKhlzvQawQHwBGzZFnSqmzVWTpKvNWrNbe2gw/u9TWbxZKWck4cULZpr8MQn/1qKqXkWp5x8NW8pe2V6EwEZZ/ozmV9i6LqnWNvWFrNFqHS/NxsHjDKWLJmrRg09jVIanqL+142x/njcWb/4/7hkT/mdLujS57gfi4UTAY9bk8oZHe6slHnu5OL3cOQ50UiL88krXkAsAVgpzuw5zi26p1R1LX38fTiw+npxdnJ2dnFfi65Ff3L9+Rb1JzfrL4SleM8/n41bxGxElony8wem7sDmhp6BAXeaiGVGF9Yr+0jqNqeKo0yettMxVtvTde8xWLxhd29dx6PjTxR0qt5CzSD2x1m4ygouOItU2pyrKslJbuzYZwTcZqEsoHeEa4ObDPeUdXkLfLdEWX97/91EFxK+PLn6+vz63l9/Djmm9YgjuK+B0l6PPbCOsydHL4Ovgk5YGn6MBsB1mEvAG+tJWGPPxA83t/ffYMkUF9hTw4Z4kgod3py8psfq+++PicRui3dJNZn8e3qAiJgrhPdN5pBoVn3dNio7QKfs8jlbjeujM1W6lKr30oEzcQKb6mueQvXJFK0ap92SUympmZatbdSM10pcGCyAPOXvCVRjq1aNsSCDRBU6VpHWUJR6qmoW6ea7Hj/oDZviVbFuN/+KL/c3m1CVuQouimXjhuS9ugsvLMSN0Sh19kl17+Zu7afRLI0XhSIXNoLaLw23SK0F1okoiKKt6LdEaOjogJW9zSsUjAgYoWLNGbEYmwK0EEIeEGm1axO2yY9nc7szDzNvm1nXzb7tJenfd3n/Qv2YatApBW0k0k22S88UOfUOSQf5zv1O9/lV+93A15XzKe3Jw4MZjPkANb83nBIGfacxVFTEkbRdSgb0F/TYN98+CkvnjjQIakjq9DbKrMIgtNeQFvl9D5K+0TFQmd1D6+dMtRUVJxpH2Q/amkQlDI7VQ0lmXJrGrWG3dSds0Qqq4/TWTZE7ywpVOdTRlOBzUMt1U9UWbzV1/dY1VMOsEsHpwWDrS1lfQ1NSyON0wuzzLlb8BZI/EvF2f8nGXqx5/PZnaZ+p8K3acRhs7nfLkV8PoMJ8J9FXC4C6HtSKTeZ9IZhhkQcMe6fepF1+LOpfgR/gbo3Rhcvp1Ix89ZWGUly2vlRPPH/Em9lIkefqiFbvHAqbLY94uSD2zZdsZ3dlDflsy2HFIa9wLbT3L8WiO749mwW6/F7D+IPOp2Y4TBuSXgjB1bbJqKH1v1+xTIKDYs3phgF8+VLL6mFc8Kk5gmzm1pQCrZfa+RxrvXdo1+/917e6BsDrsudTHiLn0kJcI4Gwt4d6+ZO9OxwN3oeSSWi+9Ho+enpzjejGxBswiPxuHVvObR/5FUYNcROn9hLRBXh3RUbbjRNXThDxnV0Ew0SpyCp5qJA7SvJzHI/DVJLi4tIxyBZq3tDqFWZ+l1K5pLyUTsl20C5dnNWOHRWBmJlLnng9Yl5LMrlBNnhVfTMT6RbbnxYxXdoi/59cMXq83i93sOz82jEY4fcuP5iNKmAtnFXLHV2GPGhz8QhJHKcivnEgQMf6rI4AfHx/pkxsBkNu7xhPJQEHCazFPP7cRwZ/uc7VoEcm7HaWuFWdXHzbGnDXEm6zqdAXTXAotyrYnEACoNGYXDInDSyTJrAWxwG0UUaFId2ZYkUxtV78kjD4tzj8Jjp+wvUVXczARYAMoEsGRYBTknqmqoqWjcIskGQSToIqWwQ4IAs4K61tfjDfwK++P756dGx1TBMrgtlkDjCXEAhiwINIlYEjx/ubqKK4Xg84vLbY1Zo2xK2B3ffhqEg5nMpIVKBiDQphZ0bMGaCfvvH14wC2srgrZrercbVmfJ0feKjfLw1qKsWznN1rXWDI8JZCcn22jFIenKatEvNuhFJO9AuykXIGusrO3PaYk68HOkVlUp6iAdifs1+B79JW8IfqL2KkDEf6dqmO3QP72sHHvLn6tWNXJlcpB58IBkfr+bfHvMZmvvlQ+LsaHd3xzCcqdeR+sWjGqfeGrPhsRV802NEXnh3o5EQthPZ2Vwxumwmsd6VOj0JwtBiKPJCw1AQG55FoXQ+gzeeKTfWfv7XHdWcbdoBYQe5uGjPxwvkb8nYZePqxi7uA9UYTy2T9cq/bSa1tfA1VzIj0jUCTIH6KkImeNV7hbeoAnm3aFArm5jkTqvZ+QhCopa8HBJxu3QtV3hrpkP7Usv9XCSZGa+Us5+K6mp7udUNuif1Iu5t+VvUrX9v0T5EPctWXHzp/LzA12G9W4+uIMPbRqNU71NgsOKLvcMz14v9SCoe8rhMjhCy+fYkgBgXHWjqi7VRCA6hVotR73SbNOafBH+7NTews2JaK9fOkOQst+EtwfP6gemR5tLxcrX86czAdwtpL+FWnfbb1tVWRg2Xf6Wtrvsf4S05l8Bbk1vq1a+6RBUFst2GemfquubH5Tm8JZlcnV9tWZjU6uTT6jauWkDgrZo5+XzD75pv82+BY1oh+w9/suw5sz4usQ0lTMqJQJg+6FQY3YrtILBGQFV74uhw93A/YfEQBrutD7w93bFZFVLCDs2Axi2Wmi2eZb/Zbd74fXuhfHm+ViaTzJeVqCoH+YJMHoSqgLaamQ9AlYAzyOaoqgU1syqGik1aaKmgHZwtbmvmto1kR9Go7UVtFTlL5IAPeI/LK3k9NfknHya7nDLLbK1sVAmeZ3kDZ2fnns89AIrbeybkqrYn5bNd0w3y2oanS1UtdzB4ts6MUf/+l0tfy4UJxm3JxVF3yEE8BvVSgy1k0tgwE+ZcA/TowdHRUSLsiiYCfkPs7WFsBV0OGfzxALxowhzSpHLPFVg3/+N1Nbczf211zrW2tval34GWcXH9GrzF4rH+t3grQ8dxO96ifPWIApSrMilvThjTG6aAJAKvLbph2zO9cd0ED9shxpqJ0KQ+lDh7c3p+cHC8kjSFT85jFtwD6W1o2AZdYKa1frFDv+xDfygS/fhjxU1tFRWlizlLr6SGDuYJkwcWFDrvU41VzGt93dRrl9Qb14TwmODtcsczEUyTyJHeFhOMJZ1BBwND+olTUAjHlW43pA9pnH5AE1xH1ldsdvTozfv9/UTYDIRPEl5UuRzbRvxxq1EhhsUEiEgmf/Pnd4BKJqvO09ZcmnmYUFNRadFt2sopgPVrtMW6TVtgd97oa+pl3fhS/ClPM+1CimH9a1JD0gG5SbOEUXx7GDN/4YQdo19CiuC23Y4sI27f8Zs357uxQDJ+ErfFEDiw8iUOxe2QUanUAAyN9K8/M68OENf2LQlfKL9P4K3yx0U9nWm8lV+lS1giCLCIDgoTpDBpBICkpRM9aZftBGLKlfwSICw3A2lYVAIwZWgDC/AG0skeyuUEmZAaSc0MUgF6OjmO+BkWjcKhAGTa3CeZh2u+x4jDtdQgNq2n9/tRiyKo1JswLOl2TAVwB4ZMjcI+FIdDqben+5EwkjoJI+gLKIQie3hwJwgHFcRZGxh913dL9DWHt3pepX02LEF+zT44K2sbkzMl0/X8sfol7XT9/SYhi9zlmyTTY+O1oiHRUwZjZOTymVgpb6vOeQPBJ5MjWn6Juq9AVRS9el7dLLs3NlYpmsiy8deKlloldQ+F2vGxh03jA5UCvlCtHuwTceWl9Z9iz6C8/gUAnAonsb2ns5wNuJRYW6NSbEPf78aNBPIkNi6vC3ZLsfOT/aMdz/HJAWJE9Hq7UWm1BXyIW280bACMgi90/xhvNXSU8OWktmit+dlu1Aq+YEg38aqv6alI3fj5UA9/S1tKalEoE6lEEol8bozBuBxHA4XfaXN4a0HIFpXrRAuTwiFuN70AW5nk5ZJELtC1XeGtVa3ua52QzJj/L23XG5RGesZXREUU1MUR+aMssCis/IlKcBWVIFTdA9QFAuLFdVDQROMxcCY5qhVSDjiv6XWSS+vdnPGSay7OmJtMc0k+9C5fkjEznUw+tp3rXTNtp/1207lv/dIv3V0UjYJi5rpf3H0RduaZ93ne3/M87/v7gRDIlRu8sk6Ub/fYcRw7in+Ly1M0nDJOBzJUBWS4bgvMxCYBcq0zn/FFzvui5KIYfu9idCmomVv7/KNr762tX0kFpsLT5pn0QujsVXLSTafmuvN39um5ReGt1ooe+jxnbjZ+3FbbivzeL+bPIgqrFIOkBjvN7dYpFkMdQ3akEQC2cRqJt0S7eKsUAxuQ3sSiaMgp85blOM0JrQzp7KMg6s2yw+oSQ61DMlli1Iuqe9wgbiXxVkkj7PHfdB3ONcJGP4VL7k8FAvQRadZqLG72hdJkXIhENuaXBoLnNECwHyB+lWwj+oLG5Gcffn7j3vpHc33zmo1Yar7POHX9GtEdOPHiz9F81uIhXhxHOqs4HXqekubCY1a6clSa0WYrxG7iq5gmRRc6K9G7QA4Vz8rtWole6+8y6K21ZY3beKtrVxuFDEOVxarK8WYBz93LzsHT3Fw0e1IpUIyDpixPs0ptGlEB3MEmK9ZskTfPwn6BzWpBoUrBEXGr8VMUav/q0fc06opqIoElIj1PumQ0EomcDQ4QSR+wujp5/lIs5fP1pYLn79xYu7e59jNfigDCkaS5L068e3Uh+vI+N//c6lKTV3PZtlTfa9e3mBWV/0+8lRk+or5VA6qcVsDt/gt9jFWTXpggiAUKrEZiS/FwLJIOACT6fKdv4FJak15qW77y2W/ubd66miKMYWD51KUIYYy9c+WlrB3Ia62SEoqtbA/eylWxKa1j57yKc40XN+x52C7AZCs0r1ZsGPsrOAe+8Op1JILw6Ei/q2NRB6TDRDC+1P0LKtqH3zSa08G+KJECBoJLb68CxlB4wRgEiLVfr23duREirUQis+kZjTk9/fFf/wAcYq1GmUymV9XXZze95aoGNuSpBuYaLz2kGnhyXzXwYDWxofx1q4H07MpUuBlhTT8RJJLhPoIuPi/ENWYSGcTi0cnI9dAGELwYjiWDwEDoztrm5rV3J95PDwCTq4G57qWXzx7UsfJbi2cwYBjeyefwe0tc1Zy8nkjrfTMpWmY2i2aFZu44HX1fVASw6CHWQU+kioGsfJ6Y+YSVVdvY9kQmrZTBZmV+nXwn/Q+F8gZyb397IhacO60x08tbcJ4YmPeR0CLeD/RdNEaB6PXu2Bw5nyIfr29u3no7Hl8iU6JJzVTq37/TMnU84Kg1UVvfOgo5HVrqnI/MfhBvdXlNIj2EzEpMMOb2mrAxCKmis2qca0NrEZeuVo6rDE1AuQhmMNSC2fo9u0YsF8a8okpxew7Wn9J6L1bd04DaRqQ7HbJSv2jcJTXgMi8KSsZRbMQiktvwXj4OWzniAtlhJ9vvPwjPBE9HCHp1SydPL89tkFab6gaMP6emW8gcmSL/RlO3ttbXr0ylKBYzcul8ep9cujCJkpXfWtt4y99arXZQ+5qLTDlOF4w4rLpWr9WJ6LwiC3k/6ha7aW43Ya/L0AzCi1Yp6hRgQAul5wP/VrirfmSycgyDQgQakpvGanKx8RsSKi8Me0d22fi9Ogpv9eicsFLcDus8slYFX++xS2w9hfKdVpQJnqaHNT76cEV/MgBMT1H1wYkg8NYMtXc5mYwYSe8jXXJr8876vDGZokAH4+63VOs7H0v/q3ir2jl2iPoRAg7pUBTxUHgLAS+o8BraQ3u4MNSC8/0rQtAB24AukZTH1kv34C0JpX502YklFu0r3BxsZfqVBOIfhVFdFm8JE0OdCYX1cqsXVGIdaM9YqxPltMAey82mArl02ZKVhi9u/305M7V8yTejU2byRpOKDJ9LknCedWYmtpRepRgRPtj6YPOXxESIyGrksBiHeKLBYLPhK3xOs1yZkFAavcyKHLoYVVijSaXCuZYuNdiIuUwqBaKlrWWqElpBZBz1W8TNuFJgAvXs4uZ2NOuJRcyScjXPpELr1R2lOXTI3GyozAKDJizriUqlxe9XA3yXCcVdctANgVZYZBXY9DywrLC4VSRcBJUlXfATemoNxM8st6Uo0jLN+7HgubiGNBIxb04TVCbZFtq8d+/OVDoUuvufo8jTKWt12C0WizsjAllyDLxFR/3STIjeeQ+jquJH3S+/y9xVwwAKj/JFOsSdqATKv6J/61TSN7xgpgy3GvCZQ2QaCAyQqJUgIsOU3a5t3Vr/cOHpo6+LgaOtVVJ2AG/l2JFUV5TzOjDOPLAjqXTvx3RH7JDn3R1Jua9C1Y/YJ53b0aSj95+BQHB1gaDi0qp5en4itUFZK3J2Oq2hxrrPUpHrkbIAWUqq+9pCqU2O031Xbr7ua82P1H0t3dd93f9MIbDDuq+F62JUbmcW3LHHT79ffiNIUH2gbvPCW+YJ2lr95/uMYWq+sQLrW/99+oOrIGtReaJUSqlN1vPLWrT5PZH1+p39PVx4BXni3pOce26A19Mh4919fPvJd3S8J7H6+QUjabdhYnLGnNpomyTf9c3zP30DCL5ECrJWFm95vCZHa1U+tcl2gwqsNeEuUdP4SC8+jo4xQC7NDY43omMjWAemBFgQtF2DUEFNr6hNOmQGsEFez8qpNglWoTVWtEk0spNV23A1AlsQlUA8q0LlAknHSVChrxzDa/QKRHB87QK4vGZQ//gJda5jlZg4+8ZPyFxo4wSQik999+AuzAcAKqsc/MeXlYVZa0dtslOLXc5Y6yDeYqsdAp3HCy9KvEOo/IIQw+2ftND1LQRxG4QGcARnsbZVKpmvqk26ZFxhx+Fqk27PHrXJOqFgEZE4MFNPC4iPjunAamWnXooabvo/Wek8/tzquMDAeeSvAkCj+OGz58+fvPiBAfS/UD179MfHchV3Z01BpcWFzy1KbbK1CU50HYK3sIROLjY4Rw2eRY9NuvK3WrqH7cBkflXCAo7vrW/lUZtczKU2qdivNnmhR/bTRQMCifgoKBtdwev5Vg90E3IMDXkcx1fWAh2DiQyAYlfwx+9+cfvhw3pg4Gtl4784x1XczahNwrCYUptEVZ04N5/apBZXqdVqhC9o9GOQVImhDZZ2mscGbh5V9MJNKwJott60Xd9qGuzZVZtkaGv8HGjE1mVvasipNqnXKkARhO8ws5Rb2BzlCGgwoZgaAsUoAsswkCcts4AWq+74nljH8Tt34KZWOFi9Cz1tncXHt9a4XC5XmGgGLu6hapPMTFZNZ8DZg5ssqgVBJtlFpb1aZq4oX6ja5L6smsXOvItFooHybO/ltfQT/9fe2fSmqm5xXFFECoKgQaxvlBcVNJJGQGqiDnQgURuxRBuTDpw676Qd7XTkVzh3sHeyp2dyz+x8mvtVLuBrW9w93adW98n5t2kjrZKswPLv86y1fsHA+unmkzzYXlDXf3TeHS0P2uRrnwMQ3v5n57jTEefxz/Bz+/SyAvy1j3vtt9bV4+/wW3uU+m5+L2weMQ+t90YrjtXntmpv0CbVw9AmXz0+LG0SaceEnYXRwPvzVswca9r5GIdA+z6k/6VNvpXll/NOMVlGuBHorth4fKqm2qrOVuIQecNwtXSCTwJJaDmlH+nMRLJqZ2QeGBaWeeJOrEV28hYzmZk83N9DmxSgZKjP1cgtbTLZrHJpUjT7faPWF7KiwChGBdHb5cz0ROjeFYhbRK+/gPtok9ygPmrLUlKSW9JEajyyWWeEvB2t2+5QHhr6/UxK2ZZq7bd2aJP1NW1Syc/30yZ7u7RJbUubTIku3XtJm+Sk06F7j/VvX7sRb78FpM8bzPheS8u3ef3mMceMB38yy3p5iGljqSq7kPnFfy5Wfmvy9V20ydQPaJOgS5tMO7TJ5E/RJj84WoaiCLbfyhtNZpzYQ5sEuhrD92Zal2vJjQpZ4g1aqLvR6lcHQmNiGbwu4UxxeSeKWXlbSQl3qSSozMw7bh7xoE3GA3yB7F0oF8KaNjmdpkm+E64zrJmzjAbDpQzToU2SCfnoTOHInCTJdBy0s3wkslrf8q4a8fudEhEfAPudDs11Qg+HAyHnUNip7wivTdgL2qRD+dlLm7S/7FcMbKpGdmiTsN/+SxgI+mEoA/wkbfJDo7WlTYL7aZMA7E3bPiPeOviXaZN7nrCLDf9J2uQHRiuONe9sHY42Sf1wOtln0CY/8tpyaJNOnw9k34ZLwPc/izb50Vne7SGrYFKu9iS5O2R3HlUjIFfti5GyP5qvWHCRnur5TsalTc4y/WGBw/RWIQ9y9DLLlwpRZCdaQ6lIsntok0i6jTJAma1yG9rkDUPTM57L9spDsj5k6wW2xZA4NS1aRP9U/BaoL+bfZHwPbRJQRqRyLkvorXzZSS7oqJYbWS6zc1GKy0xDv5/HpabJrfzWLm2SbjWvrPOcQ5ssnHn5LZc2aezSJnM7tMnyhjY51dh30iYP6bduS+y106LoRZsEpk+8eHklj7/cD7THCd9iUk/zld9qKTEj2tGqBpVazYNQbr+9oE3+ds8/XO6hTS4e0v1x33hGm1w8mcbD1W1jpiOdHu/SJtPSe2mTh4jWuc4w7KISsczsYuHsJ4axtsdetcwZvbYsDklesi8mJTaVC260ks1HwRxbhg6yd1p5Ga2WdRXdXFvoDSXQ/DQ3JMu4B20yCafFhkObJLe0STOV1s9qLLekTeoNUzPbwkWqeXX8LF82Gw1Tsf0WDVUT+2mTRBgGHCRd0J3AbzsuYlVNEsxkCBSAnVoSauW3PGiTwYDPsws96LfP5g/A4U1X1KqBzKFNhpCA410IIIAmEMJ2fKfit5yN19WQgx/SJr2PPxux/g7aZPBgtMkD+S26UqrVav8w2uTh7sSeMzdQXtKPwBOnTZ6A3xJpPGr7rUYKl/pOyPzd+mu/hfSxYVYV1X6iMCREot70iapbkdQiyla0H1HEaM3XTSz9VrWZeEab7LU6xbM71StvqUKREs+sItavr7fU6iIUabXbUcGyhKpVTDSL+TmHheJiLVQ+Gb/VWyT/MJyL60zw8FvsY5qTc+ZMliZXxm10NMeX61v0oJQ8Zy9sv9WWiPX6FvmQ2vqtmFUaLGmTpaonbTL9ijZpurRJ06FNXrQ3tElBjssn4Ldiq/UtY3B/s6c/EUh+4cSrxbkxGV2NbseTkXz7fbjyW1YHNUq8VOkpS+q37bcWz2iT1JI2Od5Lm9TZSdzs7dAm77e0ScqlTaYiTcPk3qRNfoLfms7nxUUlJubE+4XT6BOmPTpXmIluNKbneV5paElZMHNZ6c79SCg0R53GOG/0MA7SO8toFecbTHbgDBIzOp7mtXYj3vWgTfJUI55zaJOpLW1Ssw1+KMvrmilemJ3eijaZ675Jmzx0tIYII0maxtMgXQVLUWeHLJOJES9FETiFIRRNgHAMhGkiEgMoOBSCqZBKVSp0M4ahsBqA3f0amMoQm7lQFBEAQiihZqBABgZCmRebOBkiA6sACmFEQl0/AUVVFVUDFKWC0VgMozJ0LBK9qeJISD32amBcpWOJtsImk4rifHsriyIoYsv9sfm1EmoL+ZtCEa+XWL0uujpHrFY/cpYnMbLS1Mk3ZP3tcHyEYl9SR87yJFKmf5loXTBHvhNNEMebrbdUo/GTUOnId6JJ424NJfbjeCROQnjhyNHighk+zpiMfuPOotlOnDlF+SE2EQjY75ufpZ2SEPu8sI8N0uw5LrE9M5RWGlNGiPNpFThRnYFsHcWhxL637o/WlIE2SZMuIYiPt206i5kRXcpMUuTl9Z+L3AA/O+FoYWSz+ua70kcpuYkWmv9fF/XxQexaaLXq2pQQrEknZejJy5OOVqycOEq0ShJmX1vBAIrC7qCGEOB2G8LU6SYuiI2qqgplb7KfopsSoq7lfMDw/e5b8Yt2+k/CJyuExdx960/T8x173+9h3y8klIWO6iD+q6K/kGgxcbyTI8j/AYfFBGh0utYZAAAAAElFTkSuQmCC'\n","import React, { useState } from 'react'\nimport { Card, CardMedia, Container, Typography } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n\nimport { emptyIcon, linearGenomeViewIcon, svInspectorIcon } from './img'\n\nconst useStyles = makeStyles()({\n card: {\n width: 200,\n height: 150,\n cursor: 'pointer',\n },\n name: {\n marginTop: 4, // theme.spacing(),\n textAlign: 'center',\n maxWidth: 200,\n },\n media: {\n height: 150,\n },\n})\n\nconst emptySessionSnapshot = {\n name: `New session ${new Date().toLocaleString()}`,\n connections: {},\n}\n\nfunction NewSessionCard({\n name,\n onClick = () => {},\n image,\n}: {\n name: string\n onClick: () => void\n image?: string\n}) {\n const { classes } = useStyles()\n const [hovered, setHovered] = useState(false)\n return (\n \n {\n setHovered(true)\n }}\n onMouseOut={() => {\n setHovered(false)\n }}\n onClick={onClick}\n raised={Boolean(hovered)}\n >\n \n \n \n {name}\n \n \n )\n}\n\ninterface RootModel {\n setSession: (arg: unknown) => void\n}\n\nexport function NewEmptySession({ rootModel }: { rootModel: RootModel }) {\n return (\n {\n rootModel.setSession(emptySessionSnapshot)\n }}\n />\n )\n}\n\nexport function NewLinearGenomeViewSession({\n rootModel,\n}: {\n rootModel: RootModel\n}) {\n return (\n {\n rootModel.setSession({\n ...emptySessionSnapshot,\n name: `New session ${new Date().toLocaleString()}`,\n views: [{ type: 'LinearGenomeView' }],\n })\n }}\n />\n )\n}\n\nexport function NewSVInspectorSession({ rootModel }: { rootModel: RootModel }) {\n return (\n {\n rootModel.setSession({\n ...emptySessionSnapshot,\n name: `New session ${new Date().toLocaleString()}`,\n views: [{ type: 'SvInspectorView' }],\n })\n }}\n />\n )\n}\n","import React, { useState } from 'react'\nimport {\n IconButton,\n ListItem,\n ListItemButton,\n ListItemIcon,\n Menu,\n MenuItem,\n Tooltip,\n Typography,\n} from '@mui/material'\n\n// icons\nimport DeleteIcon from '@mui/icons-material/Delete'\nimport MoreVertIcon from '@mui/icons-material/MoreVert'\n\nfunction RecentSessionCard({\n sessionName,\n onClick,\n onDelete,\n}: {\n sessionName: string\n onClick: (arg: string) => void\n onDelete?: (arg: string) => void\n}) {\n const [menuAnchorEl, setMenuAnchorEl] = useState(null)\n\n return (\n <>\n {\n event.stopPropagation()\n setMenuAnchorEl(event.currentTarget)\n }}\n >\n \n \n }\n >\n {\n onClick(sessionName)\n }}\n >\n \n \n {sessionName}\n \n \n \n \n {\n setMenuAnchorEl(null)\n }}\n >\n {\n setMenuAnchorEl(null)\n onDelete?.(sessionName)\n }}\n disabled={!onDelete}\n >\n \n \n \n Delete\n \n \n \n )\n}\n\nexport default RecentSessionCard\n","import React, { lazy, useEffect, useState } from 'react'\nimport {\n Container,\n Grid,\n IconButton,\n List,\n ListItemIcon,\n ListSubheader,\n Menu,\n MenuItem,\n Typography,\n} from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport { LogoFull, ErrorMessage } from '@jbrowse/core/ui'\nimport { localStorageGetItem, notEmpty } from '@jbrowse/core/util'\n\n// icons\nimport WarningIcon from '@mui/icons-material/Warning'\nimport SettingsIcon from '@mui/icons-material/Settings'\n\n// locals\nimport {\n NewEmptySession,\n NewLinearGenomeViewSession,\n NewSVInspectorSession,\n} from './NewSessionCards'\nimport RecentSessionCard from './RecentSessionCard'\nimport type { WebRootModel } from '../rootModel/rootModel'\n\n// lazies\nconst DeleteSessionDialog = lazy(() => import('./DeleteSessionDialog'))\nconst FactoryResetDialog = lazy(\n () => import('@jbrowse/core/ui/FactoryResetDialog'),\n)\n\nconst useStyles = makeStyles()(theme => ({\n newSession: {\n backgroundColor: theme.palette.grey['300'],\n padding: 8,\n marginTop: 8,\n },\n header: {\n margin: 8, // theme.spacing(2),\n },\n settings: {\n float: 'right',\n },\n list: {\n overflow: 'auto',\n maxHeight: 200,\n },\n}))\n\nexport default function StartScreen({\n rootModel,\n onFactoryReset,\n}: {\n rootModel: WebRootModel\n onFactoryReset: () => void\n}) {\n const { classes } = useStyles()\n\n const [sessionNames, setSessionNames] = useState([])\n const [sessionToDelete, setSessionToDelete] = useState()\n const [sessionToLoad, setSessionToLoad] = useState()\n const [error, setError] = useState()\n const [updateSessionsList, setUpdateSessionsList] = useState(true)\n const [menuAnchorEl, setMenuAnchorEl] = useState(null)\n const [reset, setReset] = useState(false)\n\n useEffect(() => {\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n ;(async () => {\n try {\n if (sessionToLoad) {\n rootModel.activateSession(sessionToLoad)\n }\n } catch (e) {\n setError(e)\n }\n })()\n }, [rootModel, sessionToLoad])\n\n useEffect(() => {\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n ;(async () => {\n try {\n if (updateSessionsList) {\n setUpdateSessionsList(false)\n\n setSessionNames(\n rootModel.savedSessions.map(s => s.name).filter(notEmpty),\n )\n }\n } catch (e) {\n setError(e)\n }\n })()\n }, [rootModel.savedSessions, updateSessionsList])\n\n const lastAutosavedSession = JSON.parse(\n localStorageGetItem(rootModel.previousAutosaveId) || '{}',\n ).session\n\n return (\n <>\n {reset ? (\n \n {\n setReset(false)\n }}\n />\n \n ) : null}\n {sessionToDelete ? (\n \n {\n setSessionToDelete(undefined)\n setUpdateSessionsList(update)\n }}\n />\n \n ) : null}\n {\n event.stopPropagation()\n setMenuAnchorEl(event.currentTarget)\n }}\n >\n \n \n \n \n

\n \n Start a new session\n \n \n \n \n \n \n \n \n \n \n \n \n

\n \n Recent sessions\n \n \n {sessionNames.map(name => (\n {\n setSessionToLoad(name)\n }}\n onDelete={() => {\n setSessionToDelete(name)\n }}\n />\n ))}\n \n {lastAutosavedSession ? (\n <>\n \n Last autosave session\n \n \n {\n rootModel.loadAutosaveSession()\n }}\n />\n \n \n ) : null}\n {error ? : null}\n

\n \n\n {\n setMenuAnchorEl(null)\n }}\n >\n Advanced Settings\n {\n setReset(true)\n setMenuAnchorEl(null)\n }}\n >\n \n \n \n Reset\n \n \n \n )\n}\n"],"names":["emptyIcon","linearGenomeViewIcon","svInspectorIcon","useStyles","makeStyles","card","width","height","cursor","name","marginTop","textAlign","maxWidth","media","emptySessionSnapshot","Date","toLocaleString","connections","NewSessionCard","onClick","image","classes","hovered","setHovered","useState","React","Container","Card","className","onMouseOver","onMouseOut","raised","Boolean","CardMedia","Typography","variant","style","NewEmptySession","rootModel","setSession","NewLinearGenomeViewSession","views","type","NewSVInspectorSession","sessionName","onDelete","menuAnchorEl","setMenuAnchorEl","ListItem","secondaryAction","IconButton","event","stopPropagation","currentTarget","MoreVertIcon","ListItemButton","Tooltip","title","enterDelay","noWrap","Menu","anchorEl","open","onClose","MenuItem","disabled","ListItemIcon","DeleteIcon","DeleteSessionDialog","lazy","FactoryResetDialog","theme","newSession","backgroundColor","palette","grey","padding","header","margin","settings","float","list","overflow","maxHeight","StartScreen","onFactoryReset","sessionNames","setSessionNames","sessionToDelete","setSessionToDelete","sessionToLoad","setSessionToLoad","error","setError","updateSessionsList","setUpdateSessionsList","reset","setReset","useEffect","activateSession","e","savedSessions","map","s","filter","notEmpty","lastAutosavedSession","JSON","parse","localStorageGetItem","previousAutosaveId","session","fallback","update","undefined","SettingsIcon","LogoFull","Grid","container","spacing","item","List","RecentSessionCard","key","loadAutosaveSession","ErrorMessage","keepMounted","ListSubheader","WarningIcon"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/2197.a5134ce4.chunk.js --- a/x/static/js/2197.a5134ce4.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[2197],{22197:(e,s,l)=>{l.r(s),l.d(s,{alertClasses:()=>b.A,default:()=>a.A,getAlertUtilityClass:()=>b.X});var a=l(9937),b=l(67015)}}]); \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/2212.116fbbf4.chunk.js --- a/x/static/js/2212.116fbbf4.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[2212],{12212:(e,a,b)=>{b.r(a),b.d(a,{default:()=>s.FeatureDetails});var s=b(68984)}}]); \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/2241.3d359b22.chunk.js --- a/x/static/js/2241.3d359b22.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[2241],{72241:(e,t,l)=>{l.r(t),l.d(t,{default:()=>c});var n=l(7552),r=l(49823),a=l(68446),s=l(9236);const u=n.forwardRef((function({message:e},t){return n.createElement("div",{ref:t},n.isValidElement(e)?e:e?n.createElement(r.SanitizedHTML,{html:String(e)}):null)})),c=(0,a.observer)((function({contents:e}){return e?n.createElement(n.Suspense,{fallback:null},n.createElement(s.default,null,n.createElement(u,{message:e}))):null}))}}]); -//# sourceMappingURL=2241.3d359b22.chunk.js.map \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/2241.3d359b22.chunk.js.map --- a/x/static/js/2241.3d359b22.chunk.js.map Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"version":3,"file":"static/js/2241.3d359b22.chunk.js","mappings":"qMAQA,MAAMA,EAAkBC,EAAAA,YACtB,UAA0B,QAAEC,GAAWC,GACrC,OACEF,EAAAA,cAAA,OAAKE,IAAKA,GACPF,EAAAA,eAAqBC,GACpBA,EACEA,EACFD,EAAAA,cAACG,EAAAA,cAAa,CAACC,KAAMC,OAAOJ,KAC1B,KAGV,IAaF,GAVmBK,EAAAA,EAAAA,WAAS,UAAU,SAAEC,IACtC,OAAOA,EACLP,EAAAA,cAACQ,EAAAA,SAAQ,CAACC,SAAU,MAClBT,EAAAA,cAACU,EAAAA,QAAW,KACVV,EAAAA,cAACD,EAAe,CAACE,QAASM,MAG5B,IACN,G","sources":["../../../plugins/arc/src/ArcTooltip.tsx"],"sourcesContent":["import React, { Suspense } from 'react'\nimport { SanitizedHTML } from '@jbrowse/core/ui'\nimport { observer } from 'mobx-react'\nimport BaseTooltip from '@jbrowse/core/ui/BaseTooltip'\n\ninterface Props {\n message: React.ReactNode | string\n}\nconst TooltipContents = React.forwardRef(\n function TooltipContents2({ message }, ref) {\n return (\n

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client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { elementAcceptingRef, exactProp, unstable_ownerDocument as ownerDocument, unstable_useForkRef as useForkRef, unstable_useEventCallback as useEventCallback } from '@mui/utils';\nimport getReactNodeRef from '@mui/utils/getReactNodeRef';\n\n// TODO: return `EventHandlerName extends `on${infer EventName}` ? Lowercase : never` once generatePropTypes runs with TS 4.1\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nfunction mapEventPropToEvent(eventProp) {\n return eventProp.substring(2).toLowerCase();\n}\nfunction clickedRootScrollbar(event, doc) {\n return doc.documentElement.clientWidth < event.clientX || doc.documentElement.clientHeight < event.clientY;\n}\n/**\n * Listen for click events that occur somewhere in the document, outside of the element itself.\n * For instance, if you need to hide a menu when people click anywhere else on your page.\n *\n * Demos:\n *\n * - [Click-Away Listener](https://mui.com/material-ui/react-click-away-listener/)\n * - [Menu](https://mui.com/material-ui/react-menu/)\n *\n * API:\n *\n * - [ClickAwayListener API](https://mui.com/material-ui/api/click-away-listener/)\n */\nfunction ClickAwayListener(props) {\n const {\n children,\n disableReactTree = false,\n mouseEvent = 'onClick',\n onClickAway,\n touchEvent = 'onTouchEnd'\n } = props;\n const movedRef = React.useRef(false);\n const nodeRef = React.useRef(null);\n const activatedRef = React.useRef(false);\n const syntheticEventRef = React.useRef(false);\n React.useEffect(() => {\n // Ensure that this component is not \"activated\" synchronously.\n // https://github.com/facebook/react/issues/20074\n setTimeout(() => {\n activatedRef.current = true;\n }, 0);\n return () => {\n activatedRef.current = false;\n };\n }, []);\n const handleRef = useForkRef(getReactNodeRef(children), nodeRef);\n\n // The handler doesn't take event.defaultPrevented into account:\n //\n // event.preventDefault() is meant to stop default behaviors like\n // clicking a checkbox to check it, hitting a button to submit a form,\n // and hitting left arrow to move the cursor in a text input etc.\n // Only special HTML elements have these default behaviors.\n const handleClickAway = useEventCallback(event => {\n // Given developers can stop the propagation of the synthetic event,\n // we can only be confident with a positive value.\n const insideReactTree = syntheticEventRef.current;\n syntheticEventRef.current = false;\n const doc = ownerDocument(nodeRef.current);\n\n // 1. IE11 support, which trigger the handleClickAway even after the unbind\n // 2. The child might render null.\n // 3. Behave like a blur listener.\n if (!activatedRef.current || !nodeRef.current || 'clientX' in event && clickedRootScrollbar(event, doc)) {\n return;\n }\n\n // Do not act if user performed touchmove\n if (movedRef.current) {\n movedRef.current = false;\n return;\n }\n let insideDOM;\n\n // If not enough, can use https://github.com/DieterHolvoet/event-propagation-path/blob/master/propagationPath.js\n if (event.composedPath) {\n insideDOM = event.composedPath().includes(nodeRef.current);\n } else {\n insideDOM = !doc.documentElement.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target) || nodeRef.current.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target);\n }\n if (!insideDOM && (disableReactTree || !insideReactTree)) {\n onClickAway(event);\n }\n });\n\n // Keep track of mouse/touch events that bubbled up through the portal.\n const createHandleSynthetic = handlerName => event => {\n syntheticEventRef.current = true;\n const childrenPropsHandler = children.props[handlerName];\n if (childrenPropsHandler) {\n childrenPropsHandler(event);\n }\n };\n const childrenProps = {\n ref: handleRef\n };\n if (touchEvent !== false) {\n childrenProps[touchEvent] = createHandleSynthetic(touchEvent);\n }\n React.useEffect(() => {\n if (touchEvent !== false) {\n const mappedTouchEvent = mapEventPropToEvent(touchEvent);\n const doc = ownerDocument(nodeRef.current);\n const handleTouchMove = () => {\n movedRef.current = true;\n };\n doc.addEventListener(mappedTouchEvent, handleClickAway);\n doc.addEventListener('touchmove', handleTouchMove);\n return () => {\n doc.removeEventListener(mappedTouchEvent, handleClickAway);\n doc.removeEventListener('touchmove', handleTouchMove);\n };\n }\n return undefined;\n }, [handleClickAway, touchEvent]);\n if (mouseEvent !== false) {\n childrenProps[mouseEvent] = createHandleSynthetic(mouseEvent);\n }\n React.useEffect(() => {\n if (mouseEvent !== false) {\n const mappedMouseEvent = mapEventPropToEvent(mouseEvent);\n const doc = ownerDocument(nodeRef.current);\n doc.addEventListener(mappedMouseEvent, handleClickAway);\n return () => {\n doc.removeEventListener(mappedMouseEvent, handleClickAway);\n };\n }\n return undefined;\n }, [handleClickAway, mouseEvent]);\n return /*#__PURE__*/_jsx(React.Fragment, {\n children: /*#__PURE__*/React.cloneElement(children, childrenProps)\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? ClickAwayListener.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the TypeScript types and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The wrapped element.\n */\n children: elementAcceptingRef.isRequired,\n /**\n * If `true`, the React tree is ignored and only the DOM tree is considered.\n * This prop changes how portaled elements are handled.\n * @default false\n */\n disableReactTree: PropTypes.bool,\n /**\n * The mouse event to listen to. You can disable the listener by providing `false`.\n * @default 'onClick'\n */\n mouseEvent: PropTypes.oneOf(['onClick', 'onMouseDown', 'onMouseUp', 'onPointerDown', 'onPointerUp', false]),\n /**\n * Callback fired when a \"click away\" event is detected.\n */\n onClickAway: PropTypes.func.isRequired,\n /**\n * The touch event to listen to. You can disable the listener by providing `false`.\n * @default 'onTouchEnd'\n */\n touchEvent: PropTypes.oneOf(['onTouchEnd', 'onTouchStart', false])\n} : void 0;\nif (process.env.NODE_ENV !== 'production') {\n // eslint-disable-next-line\n ClickAwayListener['propTypes' + ''] = exactProp(ClickAwayListener.propTypes);\n}\nexport { ClickAwayListener };","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport composeClasses from '@mui/utils/composeClasses';\nimport useSlotProps from '@mui/utils/useSlotProps';\nimport useSnackbar from \"./useSnackbar.js\";\nimport ClickAwayListener from \"../ClickAwayListener/index.js\";\nimport { styled, useTheme } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport Grow from \"../Grow/index.js\";\nimport SnackbarContent from \"../SnackbarContent/index.js\";\nimport { getSnackbarUtilityClass } from \"./snackbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n anchorOrigin\n } = ownerState;\n const slots = {\n root: ['root', `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}`]\n };\n return composeClasses(slots, getSnackbarUtilityClass, classes);\n};\nconst SnackbarRoot = styled('div', {\n name: 'MuiSnackbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[`anchorOrigin${capitalize(ownerState.anchorOrigin.vertical)}${capitalize(ownerState.anchorOrigin.horizontal)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n zIndex: (theme.vars || theme).zIndex.snackbar,\n position: 'fixed',\n display: 'flex',\n left: 8,\n right: 8,\n justifyContent: 'center',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top',\n style: {\n top: 8,\n [theme.breakpoints.up('sm')]: {\n top: 24\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical !== 'top',\n style: {\n bottom: 8,\n [theme.breakpoints.up('sm')]: {\n bottom: 24\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.horizontal === 'left',\n style: {\n justifyContent: 'flex-start',\n [theme.breakpoints.up('sm')]: {\n left: 24,\n right: 'auto'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.horizontal === 'right',\n style: {\n justifyContent: 'flex-end',\n [theme.breakpoints.up('sm')]: {\n right: 24,\n left: 'auto'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.horizontal === 'center',\n style: {\n [theme.breakpoints.up('sm')]: {\n left: '50%',\n right: 'auto',\n transform: 'translateX(-50%)'\n }\n }\n }]\n})));\nconst Snackbar = /*#__PURE__*/React.forwardRef(function Snackbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiSnackbar'\n });\n const theme = useTheme();\n const defaultTransitionDuration = {\n enter: theme.transitions.duration.enteringScreen,\n exit: theme.transitions.duration.leavingScreen\n };\n const {\n action,\n anchorOrigin: {\n vertical,\n horizontal\n } = {\n vertical: 'bottom',\n horizontal: 'left'\n },\n autoHideDuration = null,\n children,\n className,\n ClickAwayListenerProps,\n ContentProps,\n disableWindowBlurListener = false,\n message,\n onBlur,\n onClose,\n onFocus,\n onMouseEnter,\n onMouseLeave,\n open,\n resumeHideDuration,\n TransitionComponent = Grow,\n transitionDuration = defaultTransitionDuration,\n TransitionProps: {\n onEnter,\n onExited,\n ...TransitionProps\n } = {},\n ...other\n } = props;\n const ownerState = {\n ...props,\n anchorOrigin: {\n vertical,\n horizontal\n },\n autoHideDuration,\n disableWindowBlurListener,\n TransitionComponent,\n transitionDuration\n };\n const classes = useUtilityClasses(ownerState);\n const {\n getRootProps,\n onClickAway\n } = useSnackbar({\n ...ownerState\n });\n const [exited, setExited] = React.useState(true);\n const rootProps = useSlotProps({\n elementType: SnackbarRoot,\n getSlotProps: getRootProps,\n externalForwardedProps: other,\n ownerState,\n additionalProps: {\n ref\n },\n className: [classes.root, className]\n });\n const handleExited = node => {\n setExited(true);\n if (onExited) {\n onExited(node);\n }\n };\n const handleEnter = (node, isAppearing) => {\n setExited(false);\n if (onEnter) {\n onEnter(node, isAppearing);\n }\n };\n\n // So we only render active snackbars.\n if (!open && exited) {\n return null;\n }\n return /*#__PURE__*/_jsx(ClickAwayListener, {\n onClickAway: onClickAway,\n ...ClickAwayListenerProps,\n children: /*#__PURE__*/_jsx(SnackbarRoot, {\n ...rootProps,\n children: /*#__PURE__*/_jsx(TransitionComponent, {\n appear: true,\n in: open,\n timeout: transitionDuration,\n direction: vertical === 'top' ? 'down' : 'up',\n onEnter: handleEnter,\n onExited: handleExited,\n ...TransitionProps,\n children: children || /*#__PURE__*/_jsx(SnackbarContent, {\n message: message,\n action: action,\n ...ContentProps\n })\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Snackbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The action to display. It renders after the message, at the end of the snackbar.\n */\n action: PropTypes.node,\n /**\n * The anchor of the `Snackbar`.\n * On smaller screens, the component grows to occupy all the available width,\n * the horizontal alignment is ignored.\n * @default { vertical: 'bottom', horizontal: 'left' }\n */\n anchorOrigin: PropTypes.shape({\n horizontal: PropTypes.oneOf(['center', 'left', 'right']).isRequired,\n vertical: PropTypes.oneOf(['bottom', 'top']).isRequired\n }),\n /**\n * The number of milliseconds to wait before automatically calling the\n * `onClose` function. `onClose` should then set the state of the `open`\n * prop to hide the Snackbar. This behavior is disabled by default with\n * the `null` value.\n * @default null\n */\n autoHideDuration: PropTypes.number,\n /**\n * Replace the `SnackbarContent` component.\n */\n children: PropTypes.element,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * Props applied to the `ClickAwayListener` element.\n */\n ClickAwayListenerProps: PropTypes.object,\n /**\n * Props applied to the [`SnackbarContent`](https://mui.com/material-ui/api/snackbar-content/) element.\n */\n ContentProps: PropTypes.object,\n /**\n * If `true`, the `autoHideDuration` timer will expire even if the window is not focused.\n * @default false\n */\n disableWindowBlurListener: PropTypes.bool,\n /**\n * When displaying multiple consecutive snackbars using a single parent-rendered\n * ``, add the `key` prop to ensure independent treatment of each message.\n * For instance, use ``. Otherwise, messages might update\n * in place, and features like `autoHideDuration` could be affected.\n */\n key: () => null,\n /**\n * The message to display.\n */\n message: PropTypes.node,\n /**\n * @ignore\n */\n onBlur: PropTypes.func,\n /**\n * Callback fired when the component requests to be closed.\n * Typically `onClose` is used to set state in the parent component,\n * which is used to control the `Snackbar` `open` prop.\n * The `reason` parameter can optionally be used to control the response to `onClose`,\n * for example ignoring `clickaway`.\n *\n * @param {React.SyntheticEvent | Event} event The event source of the callback.\n * @param {string} reason Can be: `\"timeout\"` (`autoHideDuration` expired), `\"clickaway\"`, or `\"escapeKeyDown\"`.\n */\n onClose: PropTypes.func,\n /**\n * @ignore\n */\n onFocus: PropTypes.func,\n /**\n * @ignore\n */\n onMouseEnter: PropTypes.func,\n /**\n * @ignore\n */\n onMouseLeave: PropTypes.func,\n /**\n * If `true`, the component is shown.\n */\n open: PropTypes.bool,\n /**\n * The number of milliseconds to wait before dismissing after user interaction.\n * If `autoHideDuration` prop isn't specified, it does nothing.\n * If `autoHideDuration` prop is specified but `resumeHideDuration` isn't,\n * we default to `autoHideDuration / 2` ms.\n */\n resumeHideDuration: PropTypes.number,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The component used for the transition.\n * [Follow this guide](https://mui.com/material-ui/transitions/#transitioncomponent-prop) to learn more about the requirements for this component.\n * @default Grow\n */\n TransitionComponent: PropTypes.elementType,\n /**\n * The duration for the transition, in milliseconds.\n * You may specify a single timeout for all transitions, or individually with an object.\n * @default {\n * enter: theme.transitions.duration.enteringScreen,\n * exit: theme.transitions.duration.leavingScreen,\n * }\n */\n transitionDuration: PropTypes.oneOfType([PropTypes.number, PropTypes.shape({\n appear: PropTypes.number,\n enter: PropTypes.number,\n exit: PropTypes.number\n })]),\n /**\n * Props applied to the transition element.\n * By default, the element is based on this [`Transition`](https://reactcommunity.org/react-transition-group/transition/) component.\n * @default {}\n */\n TransitionProps: PropTypes.object\n} : void 0;\nexport default Snackbar;","'use client';\n\nimport * as React from 'react';\nimport { unstable_useEventCallback as useEventCallback, unstable_useTimeout as useTimeout } from '@mui/utils';\nimport extractEventHandlers from '@mui/utils/extractEventHandlers';\n/**\n * The basic building block for creating custom snackbar.\n *\n * Demos:\n *\n * - [Snackbar](https://mui.com/base-ui/react-snackbar/#hook)\n *\n * API:\n *\n * - [useSnackbar API](https://mui.com/base-ui/react-snackbar/hooks-api/#use-snackbar)\n */\nfunction useSnackbar(parameters = {}) {\n const {\n autoHideDuration = null,\n disableWindowBlurListener = false,\n onClose,\n open,\n resumeHideDuration\n } = parameters;\n const timerAutoHide = useTimeout();\n React.useEffect(() => {\n if (!open) {\n return undefined;\n }\n\n /**\n * @param {KeyboardEvent} nativeEvent\n */\n function handleKeyDown(nativeEvent) {\n if (!nativeEvent.defaultPrevented) {\n if (nativeEvent.key === 'Escape') {\n // not calling `preventDefault` since we don't know if people may ignore this event e.g. a permanently open snackbar\n onClose?.(nativeEvent, 'escapeKeyDown');\n }\n }\n }\n document.addEventListener('keydown', handleKeyDown);\n return () => {\n document.removeEventListener('keydown', handleKeyDown);\n };\n }, [open, onClose]);\n const handleClose = useEventCallback((event, reason) => {\n onClose?.(event, reason);\n });\n const setAutoHideTimer = useEventCallback(autoHideDurationParam => {\n if (!onClose || autoHideDurationParam == null) {\n return;\n }\n timerAutoHide.start(autoHideDurationParam, () => {\n handleClose(null, 'timeout');\n });\n });\n React.useEffect(() => {\n if (open) {\n setAutoHideTimer(autoHideDuration);\n }\n return timerAutoHide.clear;\n }, [open, autoHideDuration, setAutoHideTimer, timerAutoHide]);\n const handleClickAway = event => {\n onClose?.(event, 'clickaway');\n };\n\n // Pause the timer when the user is interacting with the Snackbar\n // or when the user hide the window.\n const handlePause = timerAutoHide.clear;\n\n // Restart the timer when the user is no longer interacting with the Snackbar\n // or when the window is shown back.\n const handleResume = React.useCallback(() => {\n if (autoHideDuration != null) {\n setAutoHideTimer(resumeHideDuration != null ? resumeHideDuration : autoHideDuration * 0.5);\n }\n }, [autoHideDuration, resumeHideDuration, setAutoHideTimer]);\n const createHandleBlur = otherHandlers => event => {\n const onBlurCallback = otherHandlers.onBlur;\n onBlurCallback?.(event);\n handleResume();\n };\n const createHandleFocus = otherHandlers => event => {\n const onFocusCallback = otherHandlers.onFocus;\n onFocusCallback?.(event);\n handlePause();\n };\n const createMouseEnter = otherHandlers => event => {\n const onMouseEnterCallback = otherHandlers.onMouseEnter;\n onMouseEnterCallback?.(event);\n handlePause();\n };\n const createMouseLeave = otherHandlers => event => {\n const onMouseLeaveCallback = otherHandlers.onMouseLeave;\n onMouseLeaveCallback?.(event);\n handleResume();\n };\n React.useEffect(() => {\n // TODO: window global should be refactored here\n if (!disableWindowBlurListener && open) {\n window.addEventListener('focus', handleResume);\n window.addEventListener('blur', handlePause);\n return () => {\n window.removeEventListener('focus', handleResume);\n window.removeEventListener('blur', handlePause);\n };\n }\n return undefined;\n }, [disableWindowBlurListener, open, handleResume, handlePause]);\n const getRootProps = (externalProps = {}) => {\n const externalEventHandlers = {\n ...extractEventHandlers(parameters),\n ...extractEventHandlers(externalProps)\n };\n return {\n // ClickAwayListener adds an `onClick` prop which results in the alert not being announced.\n // See https://github.com/mui/material-ui/issues/29080\n role: 'presentation',\n ...externalProps,\n ...externalEventHandlers,\n onBlur: createHandleBlur(externalEventHandlers),\n onFocus: createHandleFocus(externalEventHandlers),\n onMouseEnter: createMouseEnter(externalEventHandlers),\n onMouseLeave: createMouseLeave(externalEventHandlers)\n };\n };\n return {\n getRootProps,\n onClickAway: handleClickAway\n };\n}\nexport default useSnackbar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getSnackbarUtilityClass(slot) {\n return generateUtilityClass('MuiSnackbar', slot);\n}\nconst snackbarClasses = generateUtilityClasses('MuiSnackbar', ['root', 'anchorOriginTopCenter', 'anchorOriginBottomCenter', 'anchorOriginTopRight', 'anchorOriginBottomRight', 'anchorOriginTopLeft', 'anchorOriginBottomLeft']);\nexport default snackbarClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { emphasize } from '@mui/system/colorManipulator';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Paper from \"../Paper/index.js\";\nimport { getSnackbarContentUtilityClass } from \"./snackbarContentClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root'],\n action: ['action'],\n message: ['message']\n };\n return composeClasses(slots, getSnackbarContentUtilityClass, classes);\n};\nconst SnackbarContentRoot = styled(Paper, {\n name: 'MuiSnackbarContent',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})(memoTheme(({\n theme\n}) => {\n const emphasis = theme.palette.mode === 'light' ? 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React, { useCallback } from 'react'\nimport { observer } from 'mobx-react'\nimport { getContainingView } from '@jbrowse/core/util'\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\n\n// local\nimport { LinearReadArcsDisplayModel } from '../model'\nimport BaseDisplayComponent from '../../shared/BaseDisplayComponent'\n\ntype LGV = LinearGenomeViewModel\n\nconst Arcs = observer(function ({\n model,\n}: {\n model: LinearReadArcsDisplayModel\n}) {\n const view = getContainingView(model) as LGV\n const width = Math.round(view.dynamicBlocks.totalWidthPx)\n const height = model.height\n // biome-ignore lint/correctness/useExhaustiveDependencies:\n const cb = useCallback(\n (ref: HTMLCanvasElement) => {\n model.setRef(ref)\n },\n // eslint-disable-next-line react-hooks/exhaustive-deps\n [model, width, height],\n )\n\n // note: the position absolute below avoids scrollbar from appearing on track\n return (\n \n )\n})\n\nconst LinearReadArcsReactComponent = observer(function ({\n model,\n}: {\n model: LinearReadArcsDisplayModel\n}) {\n return (\n \n \n \n )\n})\n\nexport default LinearReadArcsReactComponent\n","import React from 'react'\nimport { LoadingEllipses } from '@jbrowse/core/ui'\nimport {\n BlockMsg,\n LinearGenomeViewModel,\n} from '@jbrowse/plugin-linear-genome-view'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { getContainingView } from '@jbrowse/core/util'\nimport { Button, Tooltip } from '@mui/material'\n\n// local\nimport { LinearReadCloudDisplayModel } from '../LinearReadCloudDisplay/model'\nimport { LinearReadArcsDisplayModel } from '../LinearReadArcsDisplay/model'\n\nconst useStyles = makeStyles()(theme => ({\n loading: {\n backgroundColor: theme.palette.background.default,\n backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${theme.palette.action.disabledBackground} 5px, ${theme.palette.action.disabledBackground} 10px)`,\n position: 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{children}

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...props,\n color,\n disableShrink,\n size,\n thickness,\n value,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n const circleStyle = {};\n const rootStyle = {};\n const rootProps = {};\n if (variant === 'determinate') {\n const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n circleStyle.strokeDasharray = circumference.toFixed(3);\n rootProps['aria-valuenow'] = Math.round(value);\n circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n rootStyle.transform = 'rotate(-90deg)';\n }\n return /*#__PURE__*/_jsx(CircularProgressRoot, {\n className: clsx(classes.root, className),\n style: {\n width: size,\n height: size,\n ...rootStyle,\n ...style\n },\n ownerState: ownerState,\n ref: ref,\n role: \"progressbar\",\n ...rootProps,\n ...other,\n children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n className: classes.svg,\n ownerState: ownerState,\n viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n className: classes.circle,\n style: circleStyle,\n ownerState: ownerState,\n cx: SIZE,\n cy: SIZE,\n r: (SIZE - thickness) / 2,\n fill: \"none\",\n strokeWidth: thickness\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the shrink animation is disabled.\n * This only works if variant is `indeterminate`.\n * @default false\n */\n disableShrink: chainPropTypes(PropTypes.bool, props => {\n if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n }\n return null;\n }),\n /**\n * The size of the component.\n * If using a number, the pixel unit is assumed.\n * If using a string, you need to provide the CSS unit, for example '3rem'.\n * @default 40\n */\n size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The thickness of the circle.\n * @default 3.6\n */\n thickness: PropTypes.number,\n /**\n * The value of the progress indicator for the determinate variant.\n * Value between 0 and 100.\n * @default 0\n */\n value: PropTypes.number,\n /**\n * The variant to use.\n * Use indeterminate when there is no progress value.\n * @default 'indeterminate'\n */\n variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { elementAcceptingRef, exactProp, unstable_ownerDocument as ownerDocument, unstable_useForkRef as useForkRef, unstable_useEventCallback as useEventCallback } from '@mui/utils';\nimport getReactNodeRef from '@mui/utils/getReactNodeRef';\n\n// TODO: return `EventHandlerName extends `on${infer EventName}` ? Lowercase : never` once generatePropTypes runs with TS 4.1\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nfunction mapEventPropToEvent(eventProp) {\n return eventProp.substring(2).toLowerCase();\n}\nfunction clickedRootScrollbar(event, doc) {\n return doc.documentElement.clientWidth < event.clientX || doc.documentElement.clientHeight < event.clientY;\n}\n/**\n * Listen for click events that occur somewhere in the document, outside of the element itself.\n * For instance, if you need to hide a menu when people click anywhere else on your page.\n *\n * Demos:\n *\n * - [Click-Away Listener](https://mui.com/material-ui/react-click-away-listener/)\n * - [Menu](https://mui.com/material-ui/react-menu/)\n *\n * API:\n *\n * - [ClickAwayListener API](https://mui.com/material-ui/api/click-away-listener/)\n */\nfunction ClickAwayListener(props) {\n const {\n children,\n disableReactTree = false,\n mouseEvent = 'onClick',\n onClickAway,\n touchEvent = 'onTouchEnd'\n } = props;\n const movedRef = React.useRef(false);\n const nodeRef = React.useRef(null);\n const activatedRef = React.useRef(false);\n const syntheticEventRef = React.useRef(false);\n React.useEffect(() => {\n // Ensure that this component is not \"activated\" synchronously.\n // https://github.com/facebook/react/issues/20074\n setTimeout(() => {\n activatedRef.current = true;\n }, 0);\n return () => {\n activatedRef.current = false;\n };\n }, []);\n const handleRef = useForkRef(getReactNodeRef(children), nodeRef);\n\n // The handler doesn't take event.defaultPrevented into account:\n //\n // event.preventDefault() is meant to stop default behaviors like\n // clicking a checkbox to check it, hitting a button to submit a form,\n // and hitting left arrow to move the cursor in a text input etc.\n // Only special HTML elements have these default behaviors.\n const handleClickAway = useEventCallback(event => {\n // Given developers can stop the propagation of the synthetic event,\n // we can only be confident with a positive value.\n const insideReactTree = syntheticEventRef.current;\n syntheticEventRef.current = false;\n const doc = ownerDocument(nodeRef.current);\n\n // 1. IE11 support, which trigger the handleClickAway even after the unbind\n // 2. The child might render null.\n // 3. Behave like a blur listener.\n if (!activatedRef.current || !nodeRef.current || 'clientX' in event && clickedRootScrollbar(event, doc)) {\n return;\n }\n\n // Do not act if user performed touchmove\n if (movedRef.current) {\n movedRef.current = false;\n return;\n }\n let insideDOM;\n\n // If not enough, can use https://github.com/DieterHolvoet/event-propagation-path/blob/master/propagationPath.js\n if (event.composedPath) {\n insideDOM = event.composedPath().includes(nodeRef.current);\n } else {\n insideDOM = !doc.documentElement.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target) || nodeRef.current.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target);\n }\n if (!insideDOM && (disableReactTree || !insideReactTree)) {\n onClickAway(event);\n }\n });\n\n // Keep track of mouse/touch events that bubbled up through the portal.\n const createHandleSynthetic = handlerName => event => {\n syntheticEventRef.current = true;\n const childrenPropsHandler = children.props[handlerName];\n if (childrenPropsHandler) {\n childrenPropsHandler(event);\n }\n };\n const childrenProps = {\n ref: handleRef\n };\n if (touchEvent !== false) {\n childrenProps[touchEvent] = createHandleSynthetic(touchEvent);\n }\n React.useEffect(() => {\n if (touchEvent !== false) {\n const mappedTouchEvent = mapEventPropToEvent(touchEvent);\n const doc = ownerDocument(nodeRef.current);\n const handleTouchMove = () => {\n movedRef.current = true;\n };\n doc.addEventListener(mappedTouchEvent, handleClickAway);\n doc.addEventListener('touchmove', handleTouchMove);\n return () => {\n doc.removeEventListener(mappedTouchEvent, handleClickAway);\n doc.removeEventListener('touchmove', handleTouchMove);\n };\n }\n return undefined;\n }, [handleClickAway, touchEvent]);\n if (mouseEvent !== false) {\n childrenProps[mouseEvent] = createHandleSynthetic(mouseEvent);\n }\n React.useEffect(() => {\n if (mouseEvent !== false) {\n const mappedMouseEvent = mapEventPropToEvent(mouseEvent);\n const doc = ownerDocument(nodeRef.current);\n doc.addEventListener(mappedMouseEvent, handleClickAway);\n return () => {\n doc.removeEventListener(mappedMouseEvent, handleClickAway);\n };\n }\n return undefined;\n }, [handleClickAway, mouseEvent]);\n return /*#__PURE__*/_jsx(React.Fragment, {\n children: /*#__PURE__*/React.cloneElement(children, childrenProps)\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? ClickAwayListener.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the TypeScript types and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The wrapped element.\n */\n children: elementAcceptingRef.isRequired,\n /**\n * If `true`, the React tree is ignored and only the DOM tree is considered.\n * This prop changes how portaled elements are handled.\n * @default false\n */\n disableReactTree: PropTypes.bool,\n /**\n * The mouse event to listen to. You can disable the listener by providing `false`.\n * @default 'onClick'\n */\n mouseEvent: PropTypes.oneOf(['onClick', 'onMouseDown', 'onMouseUp', 'onPointerDown', 'onPointerUp', false]),\n /**\n * Callback fired when a \"click away\" event is detected.\n */\n onClickAway: PropTypes.func.isRequired,\n /**\n * The touch event to listen to. You can disable the listener by providing `false`.\n * @default 'onTouchEnd'\n */\n touchEvent: PropTypes.oneOf(['onTouchEnd', 'onTouchStart', false])\n} : void 0;\nif (process.env.NODE_ENV !== 'production') {\n // eslint-disable-next-line\n ClickAwayListener['propTypes' + ''] = exactProp(ClickAwayListener.propTypes);\n}\nexport { ClickAwayListener };","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getToolbarUtilityClass } from \"./toolbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n disableGutters,\n variant\n } = ownerState;\n const slots = {\n root: ['root', !disableGutters && 'gutters', variant]\n };\n return composeClasses(slots, getToolbarUtilityClass, classes);\n};\nconst ToolbarRoot = styled('div', {\n name: 'MuiToolbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, !ownerState.disableGutters && styles.gutters, styles[ownerState.variant]];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disableGutters,\n style: {\n paddingLeft: theme.spacing(2),\n paddingRight: theme.spacing(2),\n [theme.breakpoints.up('sm')]: {\n paddingLeft: theme.spacing(3),\n paddingRight: theme.spacing(3)\n }\n }\n }, {\n props: {\n variant: 'dense'\n },\n style: {\n minHeight: 48\n }\n }, {\n props: {\n variant: 'regular'\n },\n style: theme.mixins.toolbar\n }]\n})));\nconst Toolbar = /*#__PURE__*/React.forwardRef(function Toolbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiToolbar'\n });\n const {\n className,\n component = 'div',\n disableGutters = false,\n variant = 'regular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableGutters,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ToolbarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Toolbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.\n * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, disables gutter padding.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'regular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dense', 'regular']), PropTypes.string])\n} : void 0;\nexport default Toolbar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getToolbarUtilityClass(slot) {\n return generateUtilityClass('MuiToolbar', slot);\n}\nconst toolbarClasses = generateUtilityClasses('MuiToolbar', ['root', 'gutters', 'regular', 'dense']);\nexport default 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theme).palette[color].main\n }\n }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n name: 'MuiCircularProgress',\n slot: 'Svg',\n overridesResolver: (props, styles) => styles.svg\n})({\n display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n name: 'MuiCircularProgress',\n slot: 'Circle',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n }\n})(memoTheme(({\n theme\n}) => ({\n stroke: 'currentColor',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('stroke-dashoffset')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: {\n // Some default value that looks fine waiting for the animation to kicks in.\n strokeDasharray: '80px, 200px',\n strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n style: dashAnimation || {\n // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n }\n }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCircularProgress'\n });\n const {\n className,\n color = 'primary',\n disableShrink = false,\n size = 40,\n style,\n thickness = 3.6,\n value = 0,\n variant = 'indeterminate',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n disableShrink,\n size,\n thickness,\n value,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n const circleStyle = {};\n const rootStyle = {};\n const rootProps = {};\n if (variant === 'determinate') {\n const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n circleStyle.strokeDasharray = circumference.toFixed(3);\n rootProps['aria-valuenow'] = Math.round(value);\n circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n rootStyle.transform = 'rotate(-90deg)';\n }\n return /*#__PURE__*/_jsx(CircularProgressRoot, {\n className: clsx(classes.root, className),\n style: {\n width: size,\n height: size,\n ...rootStyle,\n ...style\n },\n ownerState: ownerState,\n ref: ref,\n role: \"progressbar\",\n ...rootProps,\n ...other,\n children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n className: classes.svg,\n ownerState: ownerState,\n viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n className: classes.circle,\n style: circleStyle,\n ownerState: ownerState,\n cx: SIZE,\n cy: SIZE,\n r: (SIZE - thickness) / 2,\n fill: \"none\",\n strokeWidth: thickness\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the shrink animation is disabled.\n * This only works if variant is `indeterminate`.\n * @default false\n */\n disableShrink: chainPropTypes(PropTypes.bool, props => {\n if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n }\n return null;\n }),\n /**\n * The size of the component.\n * If using a number, the pixel unit is assumed.\n * If using a string, you need to provide the CSS unit, for example '3rem'.\n * @default 40\n */\n size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The thickness of the circle.\n * @default 3.6\n */\n thickness: PropTypes.number,\n /**\n * The value of the progress indicator for the determinate variant.\n * Value between 0 and 100.\n * @default 0\n */\n value: PropTypes.number,\n /**\n * The variant to use.\n * Use indeterminate when there is no progress value.\n * @default 'indeterminate'\n */\n variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { elementAcceptingRef, exactProp, unstable_ownerDocument as ownerDocument, unstable_useForkRef as useForkRef, unstable_useEventCallback as useEventCallback } from '@mui/utils';\nimport getReactNodeRef from '@mui/utils/getReactNodeRef';\n\n// TODO: return `EventHandlerName extends `on${infer EventName}` ? Lowercase : never` once generatePropTypes runs with TS 4.1\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nfunction mapEventPropToEvent(eventProp) {\n return eventProp.substring(2).toLowerCase();\n}\nfunction clickedRootScrollbar(event, doc) {\n return doc.documentElement.clientWidth < event.clientX || doc.documentElement.clientHeight < event.clientY;\n}\n/**\n * Listen for click events that occur somewhere in the document, outside of the element itself.\n * For instance, if you need to hide a menu when people click anywhere else on your page.\n *\n * Demos:\n *\n * - [Click-Away Listener](https://mui.com/material-ui/react-click-away-listener/)\n * - [Menu](https://mui.com/material-ui/react-menu/)\n *\n * API:\n *\n * - [ClickAwayListener API](https://mui.com/material-ui/api/click-away-listener/)\n */\nfunction ClickAwayListener(props) {\n const {\n children,\n disableReactTree = false,\n mouseEvent = 'onClick',\n onClickAway,\n touchEvent = 'onTouchEnd'\n } = props;\n const movedRef = React.useRef(false);\n const nodeRef = React.useRef(null);\n const activatedRef = React.useRef(false);\n const syntheticEventRef = React.useRef(false);\n React.useEffect(() => {\n // Ensure that this component is not \"activated\" synchronously.\n // https://github.com/facebook/react/issues/20074\n setTimeout(() => {\n activatedRef.current = true;\n }, 0);\n return () => {\n activatedRef.current = false;\n };\n }, []);\n const handleRef = useForkRef(getReactNodeRef(children), nodeRef);\n\n // The handler doesn't take event.defaultPrevented into account:\n //\n // event.preventDefault() is meant to stop default behaviors like\n // clicking a checkbox to check it, hitting a button to submit a form,\n // and hitting left arrow to move the cursor in a text input etc.\n // Only special HTML elements have these default behaviors.\n const handleClickAway = useEventCallback(event => {\n // Given developers can stop the propagation of the synthetic event,\n // we can only be confident with a positive value.\n const insideReactTree = syntheticEventRef.current;\n syntheticEventRef.current = false;\n const doc = ownerDocument(nodeRef.current);\n\n // 1. IE11 support, which trigger the handleClickAway even after the unbind\n // 2. The child might render null.\n // 3. Behave like a blur listener.\n if (!activatedRef.current || !nodeRef.current || 'clientX' in event && clickedRootScrollbar(event, doc)) {\n return;\n }\n\n // Do not act if user performed touchmove\n if (movedRef.current) {\n movedRef.current = false;\n return;\n }\n let insideDOM;\n\n // If not enough, can use https://github.com/DieterHolvoet/event-propagation-path/blob/master/propagationPath.js\n if (event.composedPath) {\n insideDOM = event.composedPath().includes(nodeRef.current);\n } else {\n insideDOM = !doc.documentElement.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target) || nodeRef.current.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target);\n }\n if (!insideDOM && (disableReactTree || !insideReactTree)) {\n onClickAway(event);\n }\n });\n\n // Keep track of mouse/touch events that bubbled up through the portal.\n const createHandleSynthetic = handlerName => event => {\n syntheticEventRef.current = true;\n const childrenPropsHandler = children.props[handlerName];\n if (childrenPropsHandler) {\n childrenPropsHandler(event);\n }\n };\n const childrenProps = {\n ref: handleRef\n };\n if (touchEvent !== false) {\n childrenProps[touchEvent] = createHandleSynthetic(touchEvent);\n }\n React.useEffect(() => {\n if (touchEvent !== false) {\n const mappedTouchEvent = mapEventPropToEvent(touchEvent);\n const doc = ownerDocument(nodeRef.current);\n const handleTouchMove = () => {\n movedRef.current = true;\n };\n doc.addEventListener(mappedTouchEvent, handleClickAway);\n doc.addEventListener('touchmove', handleTouchMove);\n return () => {\n doc.removeEventListener(mappedTouchEvent, handleClickAway);\n doc.removeEventListener('touchmove', handleTouchMove);\n };\n }\n return undefined;\n }, [handleClickAway, touchEvent]);\n if (mouseEvent !== false) {\n childrenProps[mouseEvent] = createHandleSynthetic(mouseEvent);\n }\n React.useEffect(() => {\n if (mouseEvent !== false) {\n const mappedMouseEvent = mapEventPropToEvent(mouseEvent);\n const doc = ownerDocument(nodeRef.current);\n doc.addEventListener(mappedMouseEvent, handleClickAway);\n return () => {\n doc.removeEventListener(mappedMouseEvent, handleClickAway);\n };\n }\n return undefined;\n }, [handleClickAway, mouseEvent]);\n return /*#__PURE__*/_jsx(React.Fragment, {\n children: /*#__PURE__*/React.cloneElement(children, childrenProps)\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? ClickAwayListener.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the TypeScript types and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The wrapped element.\n */\n children: elementAcceptingRef.isRequired,\n /**\n * If `true`, the React tree is ignored and only the DOM tree is considered.\n * This prop changes how portaled elements are handled.\n * @default false\n */\n disableReactTree: PropTypes.bool,\n /**\n * The mouse event to listen to. You can disable the listener by providing `false`.\n * @default 'onClick'\n */\n mouseEvent: PropTypes.oneOf(['onClick', 'onMouseDown', 'onMouseUp', 'onPointerDown', 'onPointerUp', false]),\n /**\n * Callback fired when a \"click away\" event is detected.\n */\n onClickAway: PropTypes.func.isRequired,\n /**\n * The touch event to listen to. You can disable the listener by providing `false`.\n * @default 'onTouchEnd'\n */\n touchEvent: PropTypes.oneOf(['onTouchEnd', 'onTouchStart', false])\n} : void 0;\nif (process.env.NODE_ENV !== 'production') {\n // eslint-disable-next-line\n ClickAwayListener['propTypes' + ''] = exactProp(ClickAwayListener.propTypes);\n}\nexport { ClickAwayListener };","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getToolbarUtilityClass } from \"./toolbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n disableGutters,\n variant\n } = ownerState;\n const slots = {\n root: ['root', !disableGutters && 'gutters', variant]\n };\n return composeClasses(slots, getToolbarUtilityClass, classes);\n};\nconst ToolbarRoot = styled('div', {\n name: 'MuiToolbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, !ownerState.disableGutters && styles.gutters, styles[ownerState.variant]];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disableGutters,\n style: {\n paddingLeft: theme.spacing(2),\n paddingRight: theme.spacing(2),\n [theme.breakpoints.up('sm')]: {\n paddingLeft: theme.spacing(3),\n paddingRight: theme.spacing(3)\n }\n }\n }, {\n props: {\n variant: 'dense'\n },\n style: {\n minHeight: 48\n }\n }, {\n props: {\n variant: 'regular'\n },\n style: theme.mixins.toolbar\n }]\n})));\nconst Toolbar = /*#__PURE__*/React.forwardRef(function Toolbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiToolbar'\n });\n const {\n className,\n component = 'div',\n disableGutters = false,\n variant = 'regular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableGutters,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ToolbarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Toolbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.\n * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, disables gutter padding.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'regular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dense', 'regular']), PropTypes.string])\n} : void 0;\nexport default Toolbar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getToolbarUtilityClass(slot) {\n return generateUtilityClass('MuiToolbar', slot);\n}\nconst toolbarClasses = generateUtilityClasses('MuiToolbar', ['root', 'gutters', 'regular', 'dense']);\nexport default toolbarClasses;"],"names":["circularRotateKeyframe","circularDashKeyframe","rotateAnimation","dashAnimation","CircularProgressRoot","name","slot","overridesResolver","props","styles","ownerState","root","variant","color","theme","display","variants","style","transition","transitions","create","animation","Object","entries","palette","filter","map","vars","main","CircularProgressSVG","svg","CircularProgressCircle","circle","disableShrink","circleDisableShrink","stroke","strokeDasharray","strokeDashoffset","inProps","ref","className","size","thickness","value","other","classes","slots","useUtilityClasses","circleStyle","rootStyle","rootProps","circumference","Math","PI","toFixed","round","transform","width","height","role","children","viewBox","cx","cy","r","fill","strokeWidth","getCircularProgressUtilityClass","mapEventPropToEvent","eventProp","substring","toLowerCase","ClickAwayListener","disableReactTree","mouseEvent","onClickAway","touchEvent","movedRef","nodeRef","activatedRef","syntheticEventRef","setTimeout","current","handleRef","handleClickAway","event","insideReactTree","doc","documentElement","clientWidth","clientX","clientHeight","clientY","clickedRootScrollbar","insideDOM","composedPath","includes","contains","target","createHandleSynthetic","handlerName","childrenPropsHandler","childrenProps","mappedTouchEvent","handleTouchMove","addEventListener","removeEventListener","mappedMouseEvent","ToolbarRoot","disableGutters","gutters","position","alignItems","paddingLeft","spacing","paddingRight","breakpoints","up","minHeight","mixins","toolbar","component","as","getToolbarUtilityClass"],"sourceRoot":""} 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Fast, low-level functions for parsing and formatting GFF3.\n// JavaScript port of Robert Buels's Bio::GFF3::LowLevel Perl module.\n\n/**\n * Unescape a string value used in a GFF3 attribute.\n *\n * @param stringVal - Escaped GFF3 string value\n * @returns An unescaped string value\n */\nexport function unescape(stringVal: string): string {\n return stringVal.replaceAll(/%([0-9A-Fa-f]{2})/g, (_match, seq) =>\n String.fromCharCode(parseInt(seq, 16)),\n )\n}\n\nfunction _escape(regex: RegExp, s: string | number) {\n return String(s).replace(regex, ch => {\n const hex = ch.charCodeAt(0).toString(16).toUpperCase().padStart(2, '0')\n return `%${hex}`\n })\n}\n\n/**\n * Escape a value for use in a GFF3 attribute value.\n *\n * @param rawVal - Raw GFF3 attribute value\n * @returns An escaped string value\n */\nexport function escape(rawVal: string | number): string {\n return _escape(/[\\n;\\r\\t=%&,\\u0000-\\u001f\\u007f-\\u00ff]/g, rawVal)\n}\n\n/**\n * Escape a value for use in a GFF3 column value.\n *\n * @param rawVal - Raw GFF3 column value\n * @returns An escaped column value\n */\nexport function escapeColumn(rawVal: string | number): string {\n return _escape(/[\\n\\r\\t%\\u0000-\\u001f\\u007f-\\u00ff]/g, rawVal)\n}\n\n/**\n * Parse the 9th column (attributes) of a GFF3 feature line.\n *\n * @param attrString - String of GFF3 9th column\n * @returns Parsed attributes\n */\nexport function parseAttributes(attrString: string): GFF3Attributes {\n if (!attrString.length || attrString === '.') {\n return {}\n }\n\n const attrs: GFF3Attributes = {}\n\n attrString\n .replace(/\\r?\\n$/, '')\n .split(';')\n .forEach(a => {\n const nv = a.split('=', 2)\n if (!nv[1]?.length) {\n return\n }\n\n nv[0] = nv[0].trim()\n let arec = attrs[nv[0].trim()]\n if (!arec) {\n arec = []\n attrs[nv[0]] = arec\n }\n\n arec.push(\n ...nv[1]\n .split(',')\n .map(s => s.trim())\n .map(unescape),\n )\n })\n return attrs\n}\n\n/**\n * Parse a GFF3 feature line\n *\n * @param line - GFF3 feature line\n * @returns The parsed feature\n */\nexport function parseFeature(line: string): GFF3FeatureLine {\n // split the line into columns and replace '.' with null in each column\n const f = line.split('\\t').map(a => (a === '.' || a === '' ? null : a))\n\n // unescape only the ref, source, and type columns\n const parsed: GFF3FeatureLine = {\n seq_id: f[0] && unescape(f[0]),\n source: f[1] && unescape(f[1]),\n type: f[2] && unescape(f[2]),\n start: f[3] === null ? null : parseInt(f[3], 10),\n end: f[4] === null ? null : parseInt(f[4], 10),\n score: f[5] === null ? null : parseFloat(f[5]),\n strand: f[6],\n phase: f[7],\n attributes: f[8] === null ? null : parseAttributes(f[8]),\n }\n return parsed\n}\n\n/**\n * Parse a GFF3 directive line.\n *\n * @param line - GFF3 directive line\n * @returns The parsed directive\n */\nexport function parseDirective(\n line: string,\n):\n | GFF3Directive\n | GFF3SequenceRegionDirective\n | GFF3GenomeBuildDirective\n | null {\n const match = /^\\s*##\\s*(\\S+)\\s*(.*)/.exec(line)\n if (!match) {\n return null\n }\n\n const [, name] = match\n let [, , contents] = match\n\n const parsed: GFF3Directive = { directive: name }\n if (contents.length) {\n contents = contents.replace(/\\r?\\n$/, '')\n parsed.value = contents\n }\n\n // do a little additional parsing for sequence-region and genome-build directives\n if (name === 'sequence-region') {\n const c = contents.split(/\\s+/, 3)\n return {\n ...parsed,\n seq_id: c[0],\n start: c[1]?.replaceAll(/\\D/g, ''),\n end: c[2]?.replaceAll(/\\D/g, ''),\n } as GFF3SequenceRegionDirective\n } else if (name === 'genome-build') {\n const [source, buildName] = contents.split(/\\s+/, 2)\n return {\n ...parsed,\n source,\n buildName,\n } as GFF3GenomeBuildDirective\n }\n\n return parsed\n}\n\n/**\n * Format an attributes object into a string suitable for the 9th column of GFF3.\n *\n * @param attrs - Attributes\n * @returns GFF3 9th column string\n */\nexport function formatAttributes(attrs: GFF3Attributes): string {\n const attrOrder: string[] = []\n Object.entries(attrs).forEach(([tag, val]) => {\n if (!val) {\n return\n }\n let valstring\n if (val.hasOwnProperty('toString')) {\n valstring = escape(val.toString())\n // } else if (Array.isArray(val.values)) {\n // valstring = val.values.map(escape).join(',')\n } else if (Array.isArray(val)) {\n valstring = val.map(escape).join(',')\n } else {\n valstring = escape(val)\n }\n attrOrder.push(`${escape(tag)}=${valstring}`)\n })\n return attrOrder.length ? attrOrder.join(';') : '.'\n}\n\nfunction _formatSingleFeature(\n f: GFF3FeatureLine | GFF3FeatureLineWithRefs,\n seenFeature: Record,\n) {\n const attrString =\n f.attributes === null || f.attributes === undefined\n ? '.'\n : formatAttributes(f.attributes)\n\n const fields = [\n f.seq_id === null ? '.' : escapeColumn(f.seq_id),\n f.source === null ? '.' : escapeColumn(f.source),\n f.type === null ? '.' : escapeColumn(f.type),\n f.start === null ? '.' : escapeColumn(f.start),\n f.end === null ? '.' : escapeColumn(f.end),\n f.score === null ? '.' : escapeColumn(f.score),\n f.strand === null ? '.' : escapeColumn(f.strand),\n f.phase === null ? 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feature object or array of feature objects\n * @returns A string of one or more GFF3 lines\n */\nexport function formatFeature(\n featureOrFeatures:\n | GFF3FeatureLine\n | GFF3FeatureLineWithRefs\n | (GFF3FeatureLine | GFF3FeatureLineWithRefs)[],\n): string {\n const seen = {}\n return _formatFeature(featureOrFeatures, seen)\n}\n\n/**\n * Format a directive into a line of GFF3.\n *\n * @param directive - A directive object\n * @returns A directive line string\n */\nexport function formatDirective(directive: GFF3Directive): string {\n let str = `##${directive.directive}`\n if (directive.value) {\n str += ` ${directive.value}`\n }\n str += '\\n'\n return str\n}\n\n/**\n * Format a comment into a GFF3 comment.\n * Yes I know this is just adding a # and a newline.\n *\n * @param comment - A comment object\n * @returns A comment line string\n */\nexport function formatComment(comment: GFF3Comment): string {\n return `# ${comment.comment}\\n`\n}\n\n/**\n * Format a sequence object as FASTA\n *\n * @param seq - A sequence object\n * @returns Formatted single FASTA sequence string\n */\nexport function formatSequence(seq: GFF3Sequence): string {\n return `>${seq.id}${seq.description ? ` ${seq.description}` : ''}\\n${\n seq.sequence\n }\\n`\n}\n\n/**\n * Format a directive, comment, sequence, or feature, or array of such items,\n * into one or more lines of GFF3.\n *\n * @param itemOrItems - A comment, sequence, or feature, or array of such items\n * @returns A formatted string or array of strings\n */\nexport function formatItem(\n itemOrItems:\n | GFF3FeatureLineWithRefs\n | GFF3Directive\n | GFF3Comment\n | GFF3Sequence\n | (GFF3FeatureLineWithRefs | GFF3Directive | GFF3Comment | GFF3Sequence)[],\n): string | string[] {\n function formatSingleItem(\n item: GFF3FeatureLineWithRefs | GFF3Directive | GFF3Comment | GFF3Sequence,\n ) {\n if ('attributes' in item) {\n return formatFeature(item)\n }\n if ('directive' in item) {\n return formatDirective(item)\n }\n if ('sequence' in item) {\n return formatSequence(item)\n }\n if ('comment' in item) {\n return formatComment(item)\n }\n return '# (invalid item found during format)\\n'\n }\n\n if (Array.isArray(itemOrItems)) {\n return itemOrItems.map(formatSingleItem)\n }\n return formatSingleItem(itemOrItems)\n}\n\n/** A record of GFF3 attribute identifiers and the values of those identifiers */\nexport type GFF3Attributes = Record\n\n/** A representation of a single line of a GFF3 file */\nexport interface GFF3FeatureLine {\n /** The ID of the landmark used to establish the coordinate system for the current feature */\n seq_id: string | null\n /** A free text qualifier intended to describe the algorithm or operating procedure that generated this feature */\n source: string | null\n /** The type of the feature */\n type: string | null\n /** The start coordinates of the feature */\n start: number | null\n /** The end coordinates of the feature */\n end: number | null\n /** The score of the feature */\n score: number | null\n /** The strand of the feature */\n strand: string | null\n /** For features of type \"CDS\", the phase indicates where the next codon begins relative to the 5' end of the current CDS feature */\n phase: string | null\n /** Feature attributes */\n attributes: GFF3Attributes | null\n}\n\n/**\n * A GFF3 Feature line that includes references to other features defined in\n * their \"Parent\" or \"Derives_from\" attributes\n */\nexport interface GFF3FeatureLineWithRefs extends GFF3FeatureLine {\n /** An array of child features */\n child_features: GFF3Feature[]\n /** An array of features derived from this feature */\n derived_features: GFF3Feature[]\n}\n\nfunction _isFeatureLineWithRefs(\n featureLine: GFF3FeatureLine | GFF3FeatureLineWithRefs,\n): featureLine is GFF3FeatureLineWithRefs {\n return (\n (featureLine as GFF3FeatureLineWithRefs).child_features !== undefined &&\n (featureLine as GFF3FeatureLineWithRefs).derived_features !== undefined\n )\n}\n\n/**\n * A GFF3 feature, which may include multiple individual feature lines\n */\nexport type GFF3Feature = GFF3FeatureLineWithRefs[]\n\n/** A GFF3 directive */\nexport interface GFF3Directive {\n /** The name of the directive */\n directive: string\n /** The string value of the directive */\n value?: string\n}\n\n/** A GFF3 sequence-region directive */\nexport interface GFF3SequenceRegionDirective extends GFF3Directive {\n /** The string value of the directive */\n value: string\n /** The sequence ID parsed from the directive */\n seq_id: string\n /** The sequence start parsed from the directive */\n start: string\n /** The sequence end parsed from the directive */\n end: string\n}\n\n/** A GFF3 genome-build directive */\nexport interface GFF3GenomeBuildDirective extends GFF3Directive {\n /** The string value of the directive */\n value: string\n /** The genome build source parsed from the directive */\n source: string\n /** The genome build name parsed from the directive */\n buildName: string\n}\n\n/** A GFF3 comment */\nexport interface GFF3Comment {\n /** The text of the comment */\n comment: string\n}\n\n/** A GFF3 FASTA single sequence */\nexport interface GFF3Sequence {\n /** The ID of the sequence */\n id: string\n /** The description of the sequence */\n description?: string\n /** The sequence */\n sequence: string\n}\n\nexport type GFF3Item = GFF3Feature | GFF3Directive | GFF3Comment | GFF3Sequence\n","import * as GFF3 from './util'\n\nconst containerAttributes = {\n Parent: 'child_features' as const,\n Derives_from: 'derived_features' as const,\n}\n\nexport class FASTAParser {\n seqCallback: (sequence: GFF3.GFF3Sequence) => void\n currentSequence:\n | { id: string; sequence: string; description?: string }\n | undefined\n\n constructor(seqCallback: (sequence: GFF3.GFF3Sequence) => void) {\n this.seqCallback = seqCallback\n this.currentSequence = undefined\n }\n\n addLine(line: string): void {\n const defMatch = /^>\\s*(\\S+)\\s*(.*)/.exec(line)\n if (defMatch) {\n this._flush()\n this.currentSequence = { id: defMatch[1], sequence: '' }\n if (defMatch[2]) {\n this.currentSequence.description = defMatch[2].trim()\n }\n } else if (this.currentSequence && /\\S/.test(line)) {\n this.currentSequence.sequence += line.replaceAll(/\\s/g, '')\n }\n }\n\n private _flush() {\n if (this.currentSequence) {\n this.seqCallback(this.currentSequence)\n }\n }\n\n finish(): void {\n this._flush()\n }\n}\n\ninterface ParserArgs {\n featureCallback?(feature: GFF3.GFF3Feature): void\n endCallback?(): void\n commentCallback?(comment: GFF3.GFF3Comment): void\n errorCallback?(error: string): void\n directiveCallback?(directive: GFF3.GFF3Directive): void\n sequenceCallback?(sequence: GFF3.GFF3Sequence): void\n bufferSize?: number\n disableDerivesFromReferences?: boolean\n}\n\ninterface References {\n Parent: GFF3.GFF3Feature[]\n Derives_from: GFF3.GFF3Feature[]\n}\n\nexport default class Parser {\n featureCallback: (feature: GFF3.GFF3Feature) => void\n endCallback: () => void\n commentCallback: (comment: GFF3.GFF3Comment) => void\n errorCallback: (error: string) => void\n disableDerivesFromReferences: boolean\n directiveCallback: (directive: GFF3.GFF3Directive) => void\n sequenceCallback: (sequence: GFF3.GFF3Sequence) => void\n bufferSize: number\n fastaParser: FASTAParser | undefined = undefined\n // if this is true, the parser ignores the\n // rest of the lines in the file. currently\n // set when the file switches over to FASTA\n eof = false\n lineNumber = 0\n // features that we have to keep on hand for now because they\n // might be referenced by something else\n private _underConstructionTopLevel: GFF3.GFF3Feature[] = []\n // index of the above by ID\n private _underConstructionById: Record =\n {}\n private _completedReferences: Record<\n string,\n Record | undefined\n > = {}\n // features that reference something we have not seen yet\n // structured as:\n // { 'some_id' : {\n // 'Parent' : [ orphans that have a Parent attr referencing it ],\n // 'Derives_from' : [ orphans that have a Derives_from attr referencing it ],\n // }\n // }\n private _underConstructionOrphans: Record = {}\n\n constructor(args: ParserArgs) {\n // eslint-disable-next-line @typescript-eslint/no-empty-function\n const nullFunc = () => {}\n\n this.featureCallback = args.featureCallback || nullFunc\n this.endCallback = args.endCallback || nullFunc\n this.commentCallback = args.commentCallback || nullFunc\n this.errorCallback = args.errorCallback || nullFunc\n this.directiveCallback = args.directiveCallback || nullFunc\n this.sequenceCallback = args.sequenceCallback || nullFunc\n this.disableDerivesFromReferences =\n args.disableDerivesFromReferences || false\n\n // number of lines to buffer\n this.bufferSize = args.bufferSize === undefined ? 1000 : args.bufferSize\n }\n\n addLine(line: string): void {\n // if we have transitioned to a fasta section, just delegate to that parser\n if (this.fastaParser) {\n this.fastaParser.addLine(line)\n return\n }\n if (this.eof) {\n // otherwise, if we are done, ignore this line\n return\n }\n\n this.lineNumber += 1\n\n if (/^\\s*[^#\\s>]/.test(line)) {\n // feature line, most common case\n this._bufferLine(line)\n return\n }\n\n const match = /^\\s*(#+)(.*)/.exec(line)\n if (match) {\n // directive or comment\n const [, hashsigns] = match\n let [, , contents] = match\n\n if (hashsigns.length === 3) {\n // sync directive, all forward-references are resolved.\n this._emitAllUnderConstructionFeatures()\n } else if (hashsigns.length === 2) {\n const directive = GFF3.parseDirective(line)\n if (directive) {\n if (directive.directive === 'FASTA') {\n this._emitAllUnderConstructionFeatures()\n this.eof = true\n this.fastaParser = new FASTAParser(this.sequenceCallback)\n } else {\n this._emitItem(directive)\n }\n }\n } else {\n contents = contents.replace(/\\s*/, '')\n this._emitItem({ comment: contents })\n }\n } else if (/^\\s*$/.test(line)) {\n // blank line, do nothing\n } else if (/^\\s*>/.test(line)) {\n // implicit beginning of a FASTA section\n this._emitAllUnderConstructionFeatures()\n this.eof = true\n this.fastaParser = new FASTAParser(this.sequenceCallback)\n this.fastaParser.addLine(line)\n } else {\n // it's a parse error\n const errLine = line.replaceAll(/\\r?\\n?$/g, '')\n throw new Error(`GFF3 parse error. Cannot parse '${errLine}'.`)\n }\n }\n\n finish(): void {\n this._emitAllUnderConstructionFeatures()\n if (this.fastaParser) {\n this.fastaParser.finish()\n }\n this.endCallback()\n }\n\n private _emitItem(\n i: GFF3.GFF3Feature | GFF3.GFF3Directive | GFF3.GFF3Comment,\n ) {\n if (Array.isArray(i)) {\n this.featureCallback(i)\n } else if ('directive' in i) {\n this.directiveCallback(i)\n } else if ('comment' in i) {\n this.commentCallback(i)\n }\n }\n\n private _enforceBufferSizeLimit(additionalItemCount = 0) {\n const _unbufferItem = (item?: GFF3.GFF3Feature) => {\n if (item && Array.isArray(item) && item[0].attributes?.ID?.[0]) {\n const ids = item[0].attributes.ID\n ids.forEach(id => {\n delete this._underConstructionById[id]\n delete this._completedReferences[id]\n })\n item.forEach(i => {\n if (i.child_features) {\n i.child_features.forEach(c => _unbufferItem(c))\n }\n if (i.derived_features) {\n i.derived_features.forEach(d => _unbufferItem(d))\n }\n })\n }\n }\n\n while (\n this._underConstructionTopLevel.length + additionalItemCount >\n this.bufferSize\n ) {\n const item = this._underConstructionTopLevel.shift()\n if (item) {\n this._emitItem(item)\n _unbufferItem(item)\n }\n }\n }\n\n /**\n * return all under-construction features, called when we know\n * there will be no additional data to attach to them\n */\n private _emitAllUnderConstructionFeatures() {\n this._underConstructionTopLevel.forEach(this._emitItem.bind(this))\n\n this._underConstructionTopLevel = []\n this._underConstructionById = {}\n this._completedReferences = {}\n\n // if we have any orphans hanging around still, this is a\n // problem. die with a parse error\n if (Array.from(Object.values(this._underConstructionOrphans)).length) {\n throw new Error(\n `some features reference other features that do not exist in the file (or in the same '###' scope). ${Object.keys(\n this._underConstructionOrphans,\n ).join(',')}`,\n )\n }\n }\n\n // do the right thing with a newly-parsed feature line\n private _bufferLine(line: string) {\n const rawFeatureLine = GFF3.parseFeature(line)\n const featureLine: GFF3.GFF3FeatureLineWithRefs = {\n ...rawFeatureLine,\n child_features: [],\n derived_features: [],\n }\n // featureLine._lineNumber = this.lineNumber //< debugging aid\n\n // NOTE: a feature is an arrayref of one or more feature lines.\n const ids = featureLine.attributes?.ID || []\n const parents = featureLine.attributes?.Parent || []\n const derives = this.disableDerivesFromReferences\n ? []\n : featureLine.attributes?.Derives_from || []\n\n if (!ids.length && !parents.length && !derives.length) {\n // if it has no IDs and does not refer to anything, we can just\n // output it\n this._emitItem([featureLine])\n return\n }\n\n let feature: GFF3.GFF3Feature | undefined = undefined\n ids.forEach(id => {\n const existing = this._underConstructionById[id]\n if (existing) {\n // another location of the same feature\n if (existing[existing.length - 1].type !== featureLine.type) {\n this._parseError(\n `multi-line feature \"${id}\" has inconsistent types: \"${\n featureLine.type\n }\", \"${existing[existing.length - 1].type}\"`,\n )\n }\n existing.push(featureLine)\n feature = existing\n } else {\n // haven't seen it yet, so buffer it so we can attach\n // child features to it\n feature = [featureLine]\n\n this._enforceBufferSizeLimit(1)\n if (!parents.length && !derives.length) {\n this._underConstructionTopLevel.push(feature)\n }\n this._underConstructionById[id] = feature\n\n // see if we have anything buffered that refers to it\n this._resolveReferencesTo(feature, id)\n }\n })\n\n // try to resolve all its references\n this._resolveReferencesFrom(\n feature || [featureLine],\n { Parent: parents, Derives_from: derives },\n ids,\n )\n }\n\n private _resolveReferencesTo(feature: GFF3.GFF3Feature, id: string) {\n const references = this._underConstructionOrphans[id]\n // references is of the form\n // {\n // 'Parent' : [ orphans that have a Parent attr referencing this feature ],\n // 'Derives_from' : [ orphans that have a Derives_from attr referencing this feature ],\n // }\n if (!references) {\n return\n }\n feature.forEach(loc => {\n loc.child_features.push(...references.Parent)\n })\n feature.forEach(loc => {\n loc.derived_features.push(...references.Derives_from)\n })\n delete this._underConstructionOrphans[id]\n }\n\n private _parseError(message: string) {\n this.eof = true\n this.errorCallback(`${this.lineNumber}: ${message}`)\n }\n\n private _resolveReferencesFrom(\n feature: GFF3.GFF3Feature,\n references: { Parent: string[]; Derives_from: string[] },\n ids: string[],\n ) {\n // this is all a bit more awkward in javascript than it was in perl\n function postSet(\n obj: Record | undefined>,\n slot1: string,\n slot2: string,\n ) {\n let subObj = obj[slot1]\n if (!subObj) {\n subObj = {}\n obj[slot1] = subObj\n }\n const returnVal = subObj[slot2] || false\n subObj[slot2] = true\n return returnVal\n }\n\n references.Parent.forEach(toId => {\n const otherFeature = this._underConstructionById[toId]\n if (otherFeature) {\n const pname = containerAttributes.Parent\n if (\n !ids.filter(id =>\n postSet(this._completedReferences, id, `Parent,${toId}`),\n ).length\n ) {\n otherFeature.forEach(location => {\n location[pname].push(feature)\n })\n }\n } else {\n let ref = this._underConstructionOrphans[toId]\n if (!ref) {\n ref = {\n Parent: [],\n Derives_from: [],\n }\n this._underConstructionOrphans[toId] = ref\n }\n ref.Parent.push(feature)\n }\n })\n\n references.Derives_from.forEach(toId => {\n const otherFeature = this._underConstructionById[toId]\n if (otherFeature) {\n const pname = containerAttributes.Derives_from\n if (\n !ids.filter(id =>\n postSet(this._completedReferences, id, `Derives_from,${toId}`),\n ).length\n ) {\n otherFeature.forEach(location => {\n location[pname].push(feature)\n })\n }\n } else {\n let ref = this._underConstructionOrphans[toId]\n if (!ref) {\n ref = {\n Parent: [],\n Derives_from: [],\n }\n this._underConstructionOrphans[toId] = ref\n }\n ref.Derives_from.push(feature)\n }\n })\n }\n}\n","import Parser from './parse'\nimport { GFF3Feature } from './util'\n\n/**\n * Synchronously parse a string containing GFF3 and return an array of the\n * parsed items.\n *\n * @param str - GFF3 string\n * @param inputOptions - Parsing options\n * @returns array of parsed features, directives, comments and/or sequences\n */\nexport function parseStringSync(str: string): GFF3Feature[] {\n const items: GFF3Feature[] = []\n const parser = new Parser({\n featureCallback: arg => items.push(arg),\n disableDerivesFromReferences: true,\n errorCallback: err => {\n throw err\n },\n })\n\n for (const line of str.split(/\\r?\\n/)) {\n parser.addLine(line)\n }\n parser.finish()\n\n return items\n}\n\nexport {\n type GFF3FeatureLine,\n type GFF3Comment,\n type GFF3FeatureLineWithRefs,\n type GFF3Directive,\n type GFF3Sequence,\n type GFF3Feature,\n type GFF3Item,\n} from 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client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport elementTypeAcceptingRef from '@mui/utils/elementTypeAcceptingRef';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport isHostComponent from \"../utils/isHostComponent.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport isMuiElement from \"../utils/isMuiElement.js\";\nimport useForkRef from \"../utils/useForkRef.js\";\nimport ListContext from \"../List/ListContext.js\";\nimport { getListItemUtilityClass } from \"./listItemClasses.js\";\nimport { listItemButtonClasses } from \"../ListItemButton/index.js\";\nimport ListItemSecondaryAction from \"../ListItemSecondaryAction/index.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nexport const overridesResolver = (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, ownerState.dense && styles.dense, ownerState.alignItems === 'flex-start' && styles.alignItemsFlexStart, ownerState.divider && styles.divider, !ownerState.disableGutters && styles.gutters, !ownerState.disablePadding && styles.padding, ownerState.hasSecondaryAction && styles.secondaryAction];\n};\nconst useUtilityClasses = ownerState => {\n const {\n alignItems,\n classes,\n dense,\n disableGutters,\n disablePadding,\n divider,\n hasSecondaryAction\n } = ownerState;\n const slots = {\n root: ['root', dense && 'dense', !disableGutters && 'gutters', !disablePadding && 'padding', divider && 'divider', alignItems === 'flex-start' && 'alignItemsFlexStart', hasSecondaryAction && 'secondaryAction'],\n container: ['container']\n };\n return composeClasses(slots, getListItemUtilityClass, classes);\n};\nexport const ListItemRoot = styled('div', {\n name: 'MuiListItem',\n slot: 'Root',\n overridesResolver\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n justifyContent: 'flex-start',\n alignItems: 'center',\n position: 'relative',\n textDecoration: 'none',\n width: '100%',\n boxSizing: 'border-box',\n textAlign: 'left',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disablePadding,\n style: {\n paddingTop: 8,\n paddingBottom: 8\n }\n }, {\n props: ({\n ownerState\n }) => !ownerState.disablePadding && ownerState.dense,\n style: {\n paddingTop: 4,\n paddingBottom: 4\n }\n }, {\n props: ({\n ownerState\n }) => !ownerState.disablePadding && !ownerState.disableGutters,\n style: {\n paddingLeft: 16,\n paddingRight: 16\n }\n }, {\n props: ({\n ownerState\n }) => !ownerState.disablePadding && !!ownerState.secondaryAction,\n style: {\n // Add some space to avoid collision as `ListItemSecondaryAction`\n // is absolutely positioned.\n paddingRight: 48\n }\n }, {\n props: ({\n ownerState\n }) => !!ownerState.secondaryAction,\n style: {\n [`& > .${listItemButtonClasses.root}`]: {\n paddingRight: 48\n }\n }\n }, {\n props: {\n alignItems: 'flex-start'\n },\n style: {\n alignItems: 'flex-start'\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.divider,\n style: {\n borderBottom: `1px solid ${(theme.vars || theme).palette.divider}`,\n backgroundClip: 'padding-box'\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.button,\n style: {\n transition: theme.transitions.create('background-color', {\n duration: theme.transitions.duration.shortest\n }),\n '&:hover': {\n textDecoration: 'none',\n backgroundColor: (theme.vars || theme).palette.action.hover,\n // Reset on touch devices, it doesn't add specificity\n '@media (hover: none)': {\n backgroundColor: 'transparent'\n }\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.hasSecondaryAction,\n style: {\n // Add some space to avoid collision as `ListItemSecondaryAction`\n // is absolutely positioned.\n paddingRight: 48\n }\n }]\n})));\nconst ListItemContainer = styled('li', {\n name: 'MuiListItem',\n slot: 'Container',\n overridesResolver: (props, styles) => styles.container\n})({\n position: 'relative'\n});\n\n/**\n * Uses an additional container component if `ListItemSecondaryAction` is the last child.\n */\nconst ListItem = /*#__PURE__*/React.forwardRef(function ListItem(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiListItem'\n });\n const {\n alignItems = 'center',\n children: childrenProp,\n className,\n component: componentProp,\n components = {},\n componentsProps = {},\n ContainerComponent = 'li',\n ContainerProps: {\n className: ContainerClassName,\n ...ContainerProps\n } = {},\n dense = false,\n disableGutters = false,\n disablePadding = false,\n divider = false,\n secondaryAction,\n slotProps = {},\n slots = {},\n ...other\n } = props;\n const context = React.useContext(ListContext);\n const childContext = React.useMemo(() => ({\n dense: dense || context.dense || false,\n alignItems,\n disableGutters\n }), [alignItems, context.dense, dense, disableGutters]);\n const listItemRef = React.useRef(null);\n const children = React.Children.toArray(childrenProp);\n\n // v4 implementation, deprecated in v6, will be removed in v7\n const hasSecondaryAction = children.length && isMuiElement(children[children.length - 1], ['ListItemSecondaryAction']);\n const ownerState = {\n ...props,\n alignItems,\n dense: childContext.dense,\n disableGutters,\n disablePadding,\n divider,\n hasSecondaryAction\n };\n const classes = useUtilityClasses(ownerState);\n const handleRef = useForkRef(listItemRef, ref);\n const Root = slots.root || components.Root || ListItemRoot;\n const rootProps = slotProps.root || componentsProps.root || {};\n const componentProps = {\n className: clsx(classes.root, rootProps.className, className),\n ...other\n };\n let Component = componentProp || 'li';\n\n // v4 implementation, deprecated in v6, will be removed in v7\n if (hasSecondaryAction) {\n // Use div by default.\n Component = !componentProps.component && !componentProp ? 'div' : Component;\n\n // Avoid nesting of li > li.\n if (ContainerComponent === 'li') {\n if (Component === 'li') {\n Component = 'div';\n } else if (componentProps.component === 'li') {\n componentProps.component = 'div';\n }\n }\n return /*#__PURE__*/_jsx(ListContext.Provider, {\n value: childContext,\n children: /*#__PURE__*/_jsxs(ListItemContainer, {\n as: ContainerComponent,\n className: clsx(classes.container, ContainerClassName),\n ref: handleRef,\n ownerState: ownerState,\n ...ContainerProps,\n children: [/*#__PURE__*/_jsx(Root, {\n ...rootProps,\n ...(!isHostComponent(Root) && {\n as: Component,\n ownerState: {\n ...ownerState,\n ...rootProps.ownerState\n }\n }),\n ...componentProps,\n children: children\n }), children.pop()]\n })\n });\n }\n return /*#__PURE__*/_jsx(ListContext.Provider, {\n value: childContext,\n children: /*#__PURE__*/_jsxs(Root, {\n ...rootProps,\n as: Component,\n ref: handleRef,\n ...(!isHostComponent(Root) && {\n ownerState: {\n ...ownerState,\n ...rootProps.ownerState\n }\n }),\n ...componentProps,\n children: [children, secondaryAction && /*#__PURE__*/_jsx(ListItemSecondaryAction, {\n children: secondaryAction\n })]\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? ListItem.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Defines the `align-items` style property.\n * @default 'center'\n */\n alignItems: PropTypes.oneOf(['center', 'flex-start']),\n /**\n * The content of the component if a `ListItemSecondaryAction` is used it must\n * be the last child.\n */\n children: chainPropTypes(PropTypes.node, props => {\n const children = React.Children.toArray(props.children);\n\n // React.Children.toArray(props.children).findLastIndex(isListItemSecondaryAction)\n let secondaryActionIndex = -1;\n for (let i = children.length - 1; i >= 0; i -= 1) {\n const child = children[i];\n if (isMuiElement(child, ['ListItemSecondaryAction'])) {\n secondaryActionIndex = i;\n break;\n }\n }\n\n // is ListItemSecondaryAction the last child of ListItem\n if (secondaryActionIndex !== -1 && secondaryActionIndex !== children.length - 1) {\n return new Error('MUI: You used an element after ListItemSecondaryAction. ' + 'For ListItem to detect that it has a secondary action ' + 'you must pass it as the last child to ListItem.');\n }\n return null;\n }),\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The components used for each slot inside.\n *\n * @deprecated Use the `slots` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n * @default {}\n */\n components: PropTypes.shape({\n Root: PropTypes.elementType\n }),\n /**\n * The extra props for the slot components.\n * You can override the existing props or add new ones.\n *\n * @deprecated Use the `slotProps` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n * @default {}\n */\n componentsProps: PropTypes.shape({\n root: PropTypes.object\n }),\n /**\n * The container component used when a `ListItemSecondaryAction` is the last child.\n * @default 'li'\n * @deprecated Use the `component` or `slots.root` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n */\n ContainerComponent: elementTypeAcceptingRef,\n /**\n * Props applied to the container component if used.\n * @default {}\n * @deprecated Use the `slotProps.root` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n */\n ContainerProps: PropTypes.object,\n /**\n * If `true`, compact vertical padding designed for keyboard and mouse input is used.\n * The prop defaults to the value inherited from the parent List component.\n * @default false\n */\n dense: PropTypes.bool,\n /**\n * If `true`, the left and right padding is removed.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * If `true`, all padding is removed.\n * @default false\n */\n disablePadding: PropTypes.bool,\n /**\n * If `true`, a 1px light border is added to the bottom of the list item.\n * @default false\n */\n divider: PropTypes.bool,\n /**\n * The element to display at the end of ListItem.\n */\n secondaryAction: PropTypes.node,\n /**\n * The extra props for the slot components.\n * You can override the existing props or add new ones.\n *\n * @default {}\n */\n slotProps: PropTypes.shape({\n root: PropTypes.object\n }),\n /**\n * The components used for each slot inside.\n *\n * @default {}\n */\n slots: PropTypes.shape({\n root: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default ListItem;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getListItemUtilityClass(slot) {\n return generateUtilityClass('MuiListItem', slot);\n}\nconst listItemClasses = generateUtilityClasses('MuiListItem', ['root', 'container', 'dense', 'alignItemsFlexStart', 'divider', 'gutters', 'padding', 'secondaryAction']);\nexport default listItemClasses;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getListItemButtonUtilityClass(slot) {\n return generateUtilityClass('MuiListItemButton', slot);\n}\nconst listItemButtonClasses = generateUtilityClasses('MuiListItemButton', ['root', 'focusVisible', 'dense', 'alignItemsFlexStart', 'disabled', 'divider', 'gutters', 'selected']);\nexport default listItemButtonClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport ListContext from \"../List/ListContext.js\";\nimport { getListItemSecondaryActionClassesUtilityClass } from \"./listItemSecondaryActionClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n disableGutters,\n classes\n } = ownerState;\n const slots = {\n root: ['root', disableGutters && 'disableGutters']\n };\n return composeClasses(slots, getListItemSecondaryActionClassesUtilityClass, classes);\n};\nconst ListItemSecondaryActionRoot = styled('div', {\n name: 'MuiListItemSecondaryAction',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, ownerState.disableGutters && styles.disableGutters];\n }\n})({\n position: 'absolute',\n right: 16,\n top: '50%',\n transform: 'translateY(-50%)',\n variants: [{\n props: ({\n ownerState\n }) => ownerState.disableGutters,\n style: {\n right: 0\n }\n }]\n});\n\n/**\n * Must be used as the last child of ListItem to function properly.\n *\n * @deprecated Use the `secondaryAction` prop in the `ListItem` component instead. This component will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n */\nconst ListItemSecondaryAction = /*#__PURE__*/React.forwardRef(function ListItemSecondaryAction(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiListItemSecondaryAction'\n });\n const {\n className,\n ...other\n } = props;\n const context = React.useContext(ListContext);\n const ownerState = {\n ...props,\n disableGutters: context.disableGutters\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ListItemSecondaryActionRoot, {\n className: clsx(classes.root, className),\n ownerState: ownerState,\n ref: ref,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? ListItemSecondaryAction.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component, normally an `IconButton` or selection control.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nListItemSecondaryAction.muiName = 'ListItemSecondaryAction';\nexport default ListItemSecondaryAction;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getListItemSecondaryActionClassesUtilityClass(slot) {\n return generateUtilityClass('MuiListItemSecondaryAction', slot);\n}\nconst listItemSecondaryActionClasses = generateUtilityClasses('MuiListItemSecondaryAction', ['root', 'disableGutters']);\nexport default listItemSecondaryActionClasses;"],"names":["ListItemRoot","name","slot","overridesResolver","props","styles","ownerState","root","dense","alignItems","alignItemsFlexStart","divider","disableGutters","gutters","disablePadding","padding","hasSecondaryAction","secondaryAction","theme","display","justifyContent","position","textDecoration","width","boxSizing","textAlign","variants","style","paddingTop","paddingBottom","paddingLeft","paddingRight","borderBottom","vars","palette","backgroundClip","button","transition","transitions","create","duration","shortest","backgroundColor","action","hover","ListItemContainer","container","inProps","ref","children","childrenProp","className","component","componentProp","components","componentsProps","ContainerComponent","ContainerProps","ContainerClassName","slotProps","slots","other","context","childContext","listItemRef","toArray","length","classes","useUtilityClasses","handleRef","Root","rootProps","componentProps","Component","Provider","value","as","pop","getListItemUtilityClass","getListItemButtonUtilityClass","ListItemSecondaryActionRoot","right","top","transform","ListItemSecondaryAction","g","muiName","getListItemSecondaryActionClassesUtilityClass"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/2697.4ab94d07.chunk.js --- a/x/static/js/2697.4ab94d07.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[2697],{32697:(e,t,a)=>{a.r(t),a.d(t,{default:()=>m});var o=a(7552),n=a(68446),r=a(29499),l=a(36715),c=a(1343),s=a(58507),u=a(5401),i=a(49823);const m=(0,n.observer)((function(e){const{model:t,handleClose:a}=e,[n,m]=(0,o.useState)(""),d=/^[A-Za-z][A-Za-z0-9]$/.exec(n);return o.createElement(i.Dialog,{open:!0,onClose:a,title:"Sort by tag"},o.createElement(r.A,null,o.createElement(l.A,null,"Set the tag to sort by"),o.createElement(l.A,{color:"textSecondary"},"Examples: HP for haplotype, RG for read group, etc."),o.createElement(c.A,{value:n,onChange:e=>{m(e.target.value)},placeholder:"Enter tag name",inputProps:{maxLength:2,"data-testid":"sort-tag-name-input"},error:2===n.length&&!d,helperText:2!==n.length||d?"":"Not a valid tag",autoComplete:"off","data-testid":"sort-tag-name"}),o.createElement(s.A,null,o.createElement(u.A,{variant:"contained",color:"primary",type:"submit",autoFocus:!0,onClick:()=>{t.setSortedBy("tag",n),a()}},"Submit"),o.createElement(u.A,{variant:"contained",color:"secondary",onClick:()=>{a()}},"Cancel"))))}))}}]); 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props;\n let children = null;\n\n // Use a hook instead of onError on the img element to support server-side rendering.\n const loaded = useLoaded({\n ...imgProps,\n src,\n srcSet\n });\n const hasImg = src || srcSet;\n const hasImgNotFailing = hasImg && loaded !== 'error';\n const ownerState = {\n ...props,\n colorDefault: !hasImgNotFailing,\n component,\n variant\n };\n // This issue explains why this is required: https://github.com/mui/material-ui/issues/42184\n delete ownerState.ownerState;\n const classes = useUtilityClasses(ownerState);\n const [ImgSlot, imgSlotProps] = useSlot('img', {\n className: classes.img,\n elementType: AvatarImg,\n externalForwardedProps: {\n slots,\n slotProps: {\n img: {\n ...imgProps,\n ...slotProps.img\n }\n }\n },\n additionalProps: {\n alt,\n src,\n srcSet,\n sizes\n },\n ownerState\n });\n if (hasImgNotFailing) {\n children = /*#__PURE__*/_jsx(ImgSlot, {\n ...imgSlotProps\n });\n // We only render valid children, non valid children are rendered 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Avatar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Used in combination with `src` or `srcSet` to\n * provide an alt attribute for the rendered `img` element.\n */\n alt: PropTypes.string,\n /**\n * Used to render icon or text elements inside the Avatar if `src` is not set.\n * This can be an element, or just a string.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * [Attributes](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/img#attributes) applied to the `img` element if the component is used to display an image.\n * It can be used to listen for the loading error event.\n */\n imgProps: PropTypes.object,\n /**\n * The `sizes` attribute for the `img` element.\n */\n sizes: PropTypes.string,\n /**\n * The props used for each slot inside.\n * @default {}\n */\n slotProps: PropTypes.shape({\n img: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside.\n * @default {}\n */\n slots: PropTypes.shape({\n img: PropTypes.elementType\n }),\n /**\n * The `src` attribute for the `img` element.\n */\n src: PropTypes.string,\n /**\n * The `srcSet` attribute for the `img` element.\n * Use this attribute for responsive image display.\n */\n srcSet: PropTypes.string,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The shape of the avatar.\n * @default 'circular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['circular', 'rounded', 'square']), PropTypes.string])\n} : void 0;\nexport default Avatar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAvatarUtilityClass(slot) {\n return generateUtilityClass('MuiAvatar', slot);\n}\nconst avatarClasses = generateUtilityClasses('MuiAvatar', ['root', 'colorDefault', 'circular', 'rounded', 'square', 'img', 'fallback']);\nexport default 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client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M12 17.27L18.18 21l-1.64-7.03L22 9.24l-7.19-.61L12 2 9.19 8.63 2 9.24l5.46 4.73L5.82 21z\"\n}), 'Star');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M22 9.24l-7.19-.62L12 2 9.19 8.63 2 9.24l5.46 4.73L5.82 21 12 17.27 18.18 21l-1.63-7.03L22 9.24zM12 15.4l-3.76 2.27 1-4.28-3.32-2.88 4.38-.38L12 6.1l1.71 4.04 4.38.38-3.32 2.88 1 4.28L12 15.4z\"\n}), 'StarBorder');","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getRatingUtilityClass(slot) {\n return generateUtilityClass('MuiRating', slot);\n}\nconst ratingClasses = generateUtilityClasses('MuiRating', ['root', 'sizeSmall', 'sizeMedium', 'sizeLarge', 'readOnly', 'disabled', 'focusVisible', 'visuallyHidden', 'pristine', 'label', 'labelEmptyValueActive', 'icon', 'iconEmpty', 'iconFilled', 'iconHover', 'iconFocus', 'iconActive', 'decimal']);\nexport default ratingClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport clamp from '@mui/utils/clamp';\nimport visuallyHidden from '@mui/utils/visuallyHidden';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { useRtl } from '@mui/system/RtlProvider';\nimport isFocusVisible from '@mui/utils/isFocusVisible';\nimport { capitalize, useForkRef, useControlled, unstable_useId as useId } from \"../utils/index.js\";\nimport Star from \"../internal/svg-icons/Star.js\";\nimport StarBorder from \"../internal/svg-icons/StarBorder.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport slotShouldForwardProp from \"../styles/slotShouldForwardProp.js\";\nimport ratingClasses, { getRatingUtilityClass } from \"./ratingClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nfunction getDecimalPrecision(num) {\n const decimalPart = num.toString().split('.')[1];\n return decimalPart ? decimalPart.length : 0;\n}\nfunction roundValueToPrecision(value, precision) {\n if (value == null) {\n return value;\n }\n const nearest = Math.round(value / precision) * precision;\n return Number(nearest.toFixed(getDecimalPrecision(precision)));\n}\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n size,\n readOnly,\n disabled,\n emptyValueFocused,\n focusVisible\n } = ownerState;\n const slots = {\n root: ['root', `size${capitalize(size)}`, disabled && 'disabled', focusVisible && 'focusVisible', readOnly && 'readOnly'],\n label: ['label', 'pristine'],\n labelEmptyValue: [emptyValueFocused && 'labelEmptyValueActive'],\n icon: ['icon'],\n iconEmpty: ['iconEmpty'],\n iconFilled: ['iconFilled'],\n iconHover: ['iconHover'],\n iconFocus: ['iconFocus'],\n iconActive: ['iconActive'],\n decimal: ['decimal'],\n visuallyHidden: ['visuallyHidden']\n };\n return composeClasses(slots, getRatingUtilityClass, classes);\n};\nconst RatingRoot = styled('span', {\n name: 'MuiRating',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [{\n [`& .${ratingClasses.visuallyHidden}`]: styles.visuallyHidden\n }, styles.root, styles[`size${capitalize(ownerState.size)}`], ownerState.readOnly && styles.readOnly];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'inline-flex',\n // Required to position the pristine input absolutely\n position: 'relative',\n fontSize: theme.typography.pxToRem(24),\n color: '#faaf00',\n cursor: 'pointer',\n textAlign: 'left',\n width: 'min-content',\n WebkitTapHighlightColor: 'transparent',\n [`&.${ratingClasses.disabled}`]: {\n opacity: (theme.vars || theme).palette.action.disabledOpacity,\n pointerEvents: 'none'\n },\n [`&.${ratingClasses.focusVisible} .${ratingClasses.iconActive}`]: {\n outline: '1px solid #999'\n },\n [`& .${ratingClasses.visuallyHidden}`]: visuallyHidden,\n variants: [{\n props: {\n size: 'small'\n },\n style: {\n fontSize: theme.typography.pxToRem(18)\n }\n }, {\n props: {\n size: 'large'\n },\n style: {\n fontSize: theme.typography.pxToRem(30)\n }\n }, {\n // TODO v6: use the .Mui-readOnly global state class\n props: ({\n ownerState\n }) => ownerState.readOnly,\n style: {\n pointerEvents: 'none'\n }\n }]\n})));\nconst RatingLabel = styled('label', {\n name: 'MuiRating',\n slot: 'Label',\n overridesResolver: ({\n ownerState\n }, styles) => [styles.label, ownerState.emptyValueFocused && styles.labelEmptyValueActive]\n})({\n cursor: 'inherit',\n variants: [{\n props: ({\n ownerState\n }) => ownerState.emptyValueFocused,\n style: {\n top: 0,\n bottom: 0,\n position: 'absolute',\n outline: '1px solid #999',\n width: '100%'\n }\n }]\n});\nconst RatingIcon = styled('span', {\n name: 'MuiRating',\n slot: 'Icon',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.icon, ownerState.iconEmpty && styles.iconEmpty, ownerState.iconFilled && styles.iconFilled, ownerState.iconHover && styles.iconHover, ownerState.iconFocus && styles.iconFocus, ownerState.iconActive && styles.iconActive];\n }\n})(memoTheme(({\n theme\n}) => ({\n // Fit wrapper to actual icon size.\n display: 'flex',\n transition: theme.transitions.create('transform', {\n duration: theme.transitions.duration.shortest\n }),\n // Fix mouseLeave issue.\n // https://github.com/facebook/react/issues/4492\n pointerEvents: 'none',\n variants: [{\n props: ({\n ownerState\n }) => ownerState.iconActive,\n style: {\n transform: 'scale(1.2)'\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.iconEmpty,\n style: {\n color: (theme.vars || theme).palette.action.disabled\n }\n }]\n})));\nconst RatingDecimal = styled('span', {\n name: 'MuiRating',\n slot: 'Decimal',\n shouldForwardProp: prop => slotShouldForwardProp(prop) && prop !== 'iconActive',\n overridesResolver: (props, styles) => {\n const {\n iconActive\n } = props;\n return [styles.decimal, iconActive && styles.iconActive];\n }\n})({\n position: 'relative',\n variants: [{\n props: ({\n iconActive\n }) => iconActive,\n style: {\n transform: 'scale(1.2)'\n }\n }]\n});\nfunction IconContainer(props) {\n const {\n value,\n ...other\n } = props;\n return /*#__PURE__*/_jsx(\"span\", {\n ...other\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? IconContainer.propTypes = {\n value: PropTypes.number.isRequired\n} : void 0;\nfunction RatingItem(props) {\n const {\n classes,\n disabled,\n emptyIcon,\n focus,\n getLabelText,\n highlightSelectedOnly,\n hover,\n icon,\n IconContainerComponent,\n isActive,\n itemValue,\n labelProps,\n name,\n onBlur,\n onChange,\n onClick,\n onFocus,\n readOnly,\n ownerState,\n ratingValue,\n ratingValueRounded\n } = props;\n const isFilled = highlightSelectedOnly ? itemValue === ratingValue : itemValue <= ratingValue;\n const isHovered = itemValue <= hover;\n const isFocused = itemValue <= focus;\n const isChecked = itemValue === ratingValueRounded;\n const id = useId();\n const container = /*#__PURE__*/_jsx(RatingIcon, {\n as: IconContainerComponent,\n value: itemValue,\n className: clsx(classes.icon, isFilled ? classes.iconFilled : classes.iconEmpty, isHovered && classes.iconHover, isFocused && classes.iconFocus, isActive && classes.iconActive),\n ownerState: {\n ...ownerState,\n iconEmpty: !isFilled,\n iconFilled: isFilled,\n iconHover: isHovered,\n iconFocus: isFocused,\n iconActive: isActive\n },\n children: emptyIcon && !isFilled ? emptyIcon : icon\n });\n if (readOnly) {\n return /*#__PURE__*/_jsx(\"span\", {\n ...labelProps,\n children: container\n });\n }\n return /*#__PURE__*/_jsxs(React.Fragment, {\n children: [/*#__PURE__*/_jsxs(RatingLabel, {\n ownerState: {\n ...ownerState,\n emptyValueFocused: undefined\n },\n htmlFor: id,\n ...labelProps,\n children: [container, /*#__PURE__*/_jsx(\"span\", {\n className: classes.visuallyHidden,\n children: getLabelText(itemValue)\n })]\n }), /*#__PURE__*/_jsx(\"input\", {\n className: classes.visuallyHidden,\n onFocus: onFocus,\n onBlur: onBlur,\n onChange: onChange,\n onClick: onClick,\n disabled: disabled,\n value: itemValue,\n id: id,\n type: \"radio\",\n name: name,\n checked: isChecked\n })]\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? RatingItem.propTypes = {\n classes: PropTypes.object.isRequired,\n disabled: PropTypes.bool.isRequired,\n emptyIcon: PropTypes.node,\n focus: PropTypes.number.isRequired,\n getLabelText: PropTypes.func.isRequired,\n highlightSelectedOnly: PropTypes.bool.isRequired,\n hover: PropTypes.number.isRequired,\n icon: PropTypes.node,\n IconContainerComponent: PropTypes.elementType.isRequired,\n isActive: PropTypes.bool.isRequired,\n itemValue: PropTypes.number.isRequired,\n labelProps: PropTypes.object,\n name: PropTypes.string,\n onBlur: PropTypes.func.isRequired,\n onChange: PropTypes.func.isRequired,\n onClick: PropTypes.func.isRequired,\n onFocus: PropTypes.func.isRequired,\n ownerState: PropTypes.object.isRequired,\n ratingValue: PropTypes.number,\n ratingValueRounded: PropTypes.number,\n readOnly: PropTypes.bool.isRequired\n} : void 0;\nconst defaultIcon = /*#__PURE__*/_jsx(Star, {\n fontSize: \"inherit\"\n});\nconst defaultEmptyIcon = /*#__PURE__*/_jsx(StarBorder, {\n fontSize: \"inherit\"\n});\nfunction defaultLabelText(value) {\n return `${value || '0'} Star${value !== 1 ? 's' : ''}`;\n}\nconst Rating = /*#__PURE__*/React.forwardRef(function Rating(inProps, ref) {\n const props = useDefaultProps({\n name: 'MuiRating',\n props: inProps\n });\n const {\n className,\n defaultValue = null,\n disabled = false,\n emptyIcon = defaultEmptyIcon,\n emptyLabelText = 'Empty',\n getLabelText = defaultLabelText,\n highlightSelectedOnly = false,\n icon = defaultIcon,\n IconContainerComponent = IconContainer,\n max = 5,\n name: nameProp,\n onChange,\n onChangeActive,\n onMouseLeave,\n onMouseMove,\n precision = 1,\n readOnly = false,\n size = 'medium',\n value: valueProp,\n ...other\n } = props;\n const name = useId(nameProp);\n const [valueDerived, setValueState] = useControlled({\n controlled: valueProp,\n default: defaultValue,\n name: 'Rating'\n });\n const valueRounded = roundValueToPrecision(valueDerived, precision);\n const isRtl = useRtl();\n const [{\n hover,\n focus\n }, setState] = React.useState({\n hover: -1,\n focus: -1\n });\n let value = valueRounded;\n if (hover !== -1) {\n value = hover;\n }\n if (focus !== -1) {\n value = focus;\n }\n const [focusVisible, setFocusVisible] = React.useState(false);\n const rootRef = React.useRef();\n const handleRef = useForkRef(rootRef, ref);\n const handleMouseMove = event => {\n if (onMouseMove) {\n onMouseMove(event);\n }\n const rootNode = rootRef.current;\n const {\n right,\n left,\n width: containerWidth\n } = rootNode.getBoundingClientRect();\n let percent;\n if (isRtl) {\n percent = (right - event.clientX) / containerWidth;\n } else {\n percent = (event.clientX - left) / containerWidth;\n }\n let newHover = roundValueToPrecision(max * percent + precision / 2, precision);\n newHover = clamp(newHover, precision, max);\n setState(prev => prev.hover === newHover && prev.focus === newHover ? prev : {\n hover: newHover,\n focus: newHover\n });\n setFocusVisible(false);\n if (onChangeActive && hover !== newHover) {\n onChangeActive(event, newHover);\n }\n };\n const handleMouseLeave = event => {\n if (onMouseLeave) {\n onMouseLeave(event);\n }\n const newHover = -1;\n setState({\n hover: newHover,\n focus: newHover\n });\n if (onChangeActive && hover !== newHover) {\n onChangeActive(event, newHover);\n }\n };\n const handleChange = event => {\n let newValue = event.target.value === '' ? null : parseFloat(event.target.value);\n\n // Give mouse priority over keyboard\n // Fix https://github.com/mui/material-ui/issues/22827\n if (hover !== -1) {\n newValue = hover;\n }\n setValueState(newValue);\n if (onChange) {\n onChange(event, newValue);\n }\n };\n const handleClear = event => {\n // Ignore keyboard events\n // https://github.com/facebook/react/issues/7407\n if (event.clientX === 0 && event.clientY === 0) {\n return;\n }\n setState({\n hover: -1,\n focus: -1\n });\n setValueState(null);\n if (onChange && parseFloat(event.target.value) === valueRounded) {\n onChange(event, null);\n }\n };\n const handleFocus = event => {\n if (isFocusVisible(event.target)) {\n setFocusVisible(true);\n }\n const newFocus = parseFloat(event.target.value);\n setState(prev => ({\n hover: prev.hover,\n focus: newFocus\n }));\n };\n const handleBlur = event => {\n if (hover !== -1) {\n return;\n }\n if (!isFocusVisible(event.target)) {\n setFocusVisible(false);\n }\n const newFocus = -1;\n setState(prev => ({\n hover: prev.hover,\n focus: newFocus\n }));\n };\n const [emptyValueFocused, setEmptyValueFocused] = React.useState(false);\n const ownerState = {\n ...props,\n defaultValue,\n disabled,\n emptyIcon,\n emptyLabelText,\n emptyValueFocused,\n focusVisible,\n getLabelText,\n icon,\n IconContainerComponent,\n max,\n precision,\n readOnly,\n size\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsxs(RatingRoot, {\n ref: handleRef,\n onMouseMove: handleMouseMove,\n onMouseLeave: handleMouseLeave,\n className: clsx(classes.root, className, readOnly && 'MuiRating-readOnly'),\n ownerState: ownerState,\n role: readOnly ? 'img' : null,\n \"aria-label\": readOnly ? getLabelText(value) : null,\n ...other,\n children: [Array.from(new Array(max)).map((_, index) => {\n const itemValue = index + 1;\n const ratingItemProps = {\n classes,\n disabled,\n emptyIcon,\n focus,\n getLabelText,\n highlightSelectedOnly,\n hover,\n icon,\n IconContainerComponent,\n name,\n onBlur: handleBlur,\n onChange: handleChange,\n onClick: handleClear,\n onFocus: handleFocus,\n ratingValue: value,\n ratingValueRounded: valueRounded,\n readOnly,\n ownerState\n };\n const isActive = itemValue === Math.ceil(value) && (hover !== -1 || focus !== -1);\n if (precision < 1) {\n const items = Array.from(new Array(1 / precision));\n return /*#__PURE__*/_jsx(RatingDecimal, {\n className: clsx(classes.decimal, isActive && classes.iconActive),\n ownerState: ownerState,\n iconActive: isActive,\n children: items.map(($, indexDecimal) => {\n const itemDecimalValue = roundValueToPrecision(itemValue - 1 + (indexDecimal + 1) * precision, precision);\n return /*#__PURE__*/_jsx(RatingItem, {\n ...ratingItemProps,\n // The icon is already displayed as active\n isActive: false,\n itemValue: itemDecimalValue,\n labelProps: {\n style: items.length - 1 === indexDecimal ? {} : {\n width: itemDecimalValue === value ? `${(indexDecimal + 1) * precision * 100}%` : '0%',\n overflow: 'hidden',\n position: 'absolute'\n }\n }\n }, itemDecimalValue);\n })\n }, itemValue);\n }\n return /*#__PURE__*/_jsx(RatingItem, {\n ...ratingItemProps,\n isActive: isActive,\n itemValue: itemValue\n }, itemValue);\n }), !readOnly && !disabled && /*#__PURE__*/_jsxs(RatingLabel, {\n className: clsx(classes.label, classes.labelEmptyValue),\n ownerState: ownerState,\n children: [/*#__PURE__*/_jsx(\"input\", {\n className: classes.visuallyHidden,\n value: \"\",\n id: `${name}-empty`,\n type: \"radio\",\n name: name,\n checked: valueRounded == null,\n onFocus: () => setEmptyValueFocused(true),\n onBlur: () => setEmptyValueFocused(false),\n onChange: handleChange\n }), /*#__PURE__*/_jsx(\"span\", {\n className: classes.visuallyHidden,\n children: emptyLabelText\n })]\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Rating.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The default value. Use when the component is not controlled.\n * @default null\n */\n defaultValue: PropTypes.number,\n /**\n * If `true`, the component is disabled.\n * @default false\n */\n disabled: PropTypes.bool,\n /**\n * The icon to display when empty.\n * @default \n */\n emptyIcon: PropTypes.node,\n /**\n * The label read when the rating input is empty.\n * @default 'Empty'\n */\n emptyLabelText: PropTypes.node,\n /**\n * Accepts a function which returns a string value that provides a user-friendly name for the current value of the rating.\n * This is important for screen reader users.\n *\n * For localization purposes, you can use the provided [translations](https://mui.com/material-ui/guides/localization/).\n * @param {number} value The rating label's value to format.\n * @returns {string}\n * @default function defaultLabelText(value) {\n * return `${value || '0'} Star${value !== 1 ? 's' : ''}`;\n * }\n */\n getLabelText: PropTypes.func,\n /**\n * If `true`, only the selected icon will be highlighted.\n * @default false\n */\n highlightSelectedOnly: PropTypes.bool,\n /**\n * The icon to display.\n * @default \n */\n icon: PropTypes.node,\n /**\n * The component containing the icon.\n * @default function IconContainer(props) {\n * const { value, ...other } = props;\n * return ;\n * }\n */\n IconContainerComponent: PropTypes.elementType,\n /**\n * Maximum rating.\n * @default 5\n */\n max: PropTypes.number,\n /**\n * The name attribute of the radio `input` elements.\n * This input `name` should be unique within the page.\n * Being unique within a form is insufficient since the `name` is used to generated IDs.\n */\n name: PropTypes.string,\n /**\n * Callback fired when the value changes.\n * @param {React.SyntheticEvent} event The event source of the callback.\n * @param {number|null} value The new value.\n */\n onChange: PropTypes.func,\n /**\n * Callback function 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React, { Suspense } from 'react'\nimport { AppBar, IconButton, Paper, Toolbar, Typography } from '@mui/material'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { getEnv } from 'mobx-state-tree'\nimport { SessionWithWidgets } from '@jbrowse/core/util'\n\n// icons\nimport CloseIcon from '@mui/icons-material/Close'\n\nconst useStyles = makeStyles()(theme => ({\n paper: {\n overflow: 'auto',\n minWidth: 800,\n },\n closeButton: {\n position: 'absolute',\n right: theme.spacing(1),\n top: theme.spacing(1),\n color: theme.palette.grey[500],\n },\n}))\n\nconst DrawerAppBar = observer(function DrawerAppBar({\n session,\n onClose,\n}: {\n session: SessionWithWidgets\n onClose: () => void\n}) {\n const { classes } = useStyles()\n const { visibleWidget } = session\n const { pluginManager } = getEnv(session)\n\n if (!visibleWidget) {\n return null\n }\n const { HeadingComponent, heading } = pluginManager.getWidgetType(\n visibleWidget.type,\n )\n\n return (\n \n \n \n \n )\n})\n\nconst ModalWidget = observer(function ({\n session,\n onClose,\n}: {\n session: SessionWithWidgets\n onClose: () => void\n}) {\n const { classes } = useStyles()\n const { visibleWidget } = session\n const { pluginManager } = getEnv(session)\n\n if (!visibleWidget) {\n return null\n }\n const { ReactComponent } = pluginManager.getWidgetType(visibleWidget.type)\n const Component = pluginManager.evaluateExtensionPoint(\n 'Core-replaceWidget',\n ReactComponent,\n {\n session,\n model: visibleWidget,\n },\n ) as React.FC | undefined\n return (\n

\n model.vview.scroll(100)}\n >\n \n \n

\n\n model.hview.scroll(-100)}\n >\n \n \n

\n model.hview.scroll(100)}\n >\n \n \n\n

\n model.vview.scroll(-100)}\n >\n \n \n

\n {\n model.hview.zoomIn()\n model.vview.zoomIn()\n }}\n >\n \n \n

\n {\n model.hview.zoomOut()\n model.vview.zoomOut()\n }}\n >\n \n \n \n )\n})\n\nexport default PanButtons\n","import SvgIcon, { SvgIconProps } from '@mui/material/SvgIcon'\nimport React from 'react'\n\nexport function CursorMove(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n\nexport function CursorMouse(props: SvgIconProps) {\n return (\n \n \n \n )\n}\n","import React from 'react'\nimport { IconButton } from '@mui/material'\nimport { observer } from 'mobx-react'\nimport CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton'\n\n// icons\nimport ZoomOut from '@mui/icons-material/ZoomOut'\nimport ZoomIn from '@mui/icons-material/ZoomIn'\nimport MoreVert from '@mui/icons-material/MoreVert'\nimport { CursorMouse, CursorMove } from './CursorIcon'\nimport { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons'\n\n// locals\nimport { DotplotViewModel } from '../model'\n\nconst DotplotControls = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n return (\n

\n \n \n \n\n \n \n \n\n model.activateTrackSelector()}\n title=\"Open track selector\"\n >\n \n \n\n {\n model.squareView()\n },\n label: 'Square view - same base pairs per pixel',\n },\n {\n onClick: () => {\n model.squareViewProportional()\n },\n label: 'Rectanglularize view - same total bp',\n },\n {\n onClick: () => {\n model.showAllRegions()\n },\n label: 'Show all regions',\n },\n {\n onClick: () => {\n model.setDrawCigar(!model.drawCigar)\n },\n type: 'checkbox',\n label: 'Draw CIGAR',\n checked: model.drawCigar,\n },\n {\n onClick: () => {\n model.setShowPanButtons(!model.showPanButtons)\n },\n label: 'Show pan buttons',\n type: 'checkbox',\n checked: model.showPanButtons,\n },\n {\n label: 'Click and drag mode',\n subMenu: [\n {\n onClick: () => {\n model.setCursorMode('move')\n },\n label:\n 'Pan by default, select region when ctrl/cmd key is held',\n icon: CursorMove,\n type: 'radio',\n checked: model.cursorMode === 'move',\n },\n {\n onClick: () => {\n model.setCursorMode('crosshair')\n },\n label:\n 'Select region by default, pan when ctrl/cmd key is held',\n icon: CursorMouse,\n type: 'radio',\n checked: model.cursorMode === 'crosshair',\n },\n ],\n },\n {\n label: 'Wheel scroll mode',\n subMenu: [\n {\n onClick: () => {\n model.setWheelMode('pan')\n },\n label: 'Pans view',\n type: 'radio',\n checked: model.wheelMode === 'pan',\n },\n {\n onClick: () => {\n model.setWheelMode('zoom')\n },\n label: 'Zooms view',\n type: 'radio',\n checked: model.wheelMode === 'zoom',\n },\n {\n onClick: () => {\n model.setWheelMode('none')\n },\n label: 'Disable',\n type: 'radio',\n checked: model.wheelMode === 'none',\n },\n ],\n },\n ]}\n >\n \n \n

\n )\n})\n\nexport default DotplotControls\n","import React from 'react'\nimport { Typography } from '@mui/material'\nimport { observer } from 'mobx-react'\nimport { makeStyles } from 'tss-react/mui'\nimport { getBpDisplayStr } from '@jbrowse/core/util'\n\n// locals\nimport { DotplotViewModel } from '../model'\nimport DotplotWarnings from './DotplotWarnings'\nimport PanButtons from './PanButtons'\nimport DotplotControls from './DotplotControls'\n\nconst useStyles = makeStyles()({\n bp: {\n display: 'flex',\n alignItems: 'center',\n marginLeft: 10,\n },\n spacer: {\n flexGrow: 1,\n },\n headerBar: {\n display: 'flex',\n position: 'relative',\n },\n})\n\nconst DotplotHeader = observer(function ({\n model,\n selection,\n}: {\n model: DotplotViewModel\n selection?: { width: number; height: number }\n}) {\n const { classes } = useStyles()\n const { hview, vview, showPanButtons } = model\n return (\n

\n \n \n x: {hview.assemblyNames.join(',')} {getBpDisplayStr(hview.currBp)}\n
\n y: {vview.assemblyNames.join(',')} {getBpDisplayStr(vview.currBp)}\n \n {selection ? (\n \n {`width:${getBpDisplayStr(hview.bpPerPx * selection.width)}`}
\n {`height:${getBpDisplayStr(vview.bpPerPx * selection.height)}`}\n \n ) : null}\n

\n \n {showPanButtons ? : null}\n

\n )\n})\n\nexport default DotplotHeader\n","import React, { useState, useEffect, useRef, lazy, Suspense } from 'react'\nimport { LoadingEllipses, Menu, ResizeHandle } from '@jbrowse/core/ui'\nimport { observer } from 'mobx-react'\nimport { transaction } from 'mobx'\nimport { makeStyles } from 'tss-react/mui'\n\n// locals\nimport { DotplotViewModel } from '../model'\nimport ImportForm from './ImportForm'\nimport Header from './Header'\nimport Grid from './Grid'\nimport { VerticalAxis, HorizontalAxis } from './Axes'\n\nconst TooltipWhereClicked = lazy(() => import('./DotplotTooltipClick'))\nconst TooltipWhereMouseovered = lazy(() => import('./DotplotTooltipMouseover'))\n\nconst blank = { left: 0, top: 0, width: 0, height: 0 }\n\nconst useStyles = makeStyles()(theme => ({\n spacer: {\n gridColumn: '1/2',\n gridRow: '2/2',\n },\n root: {\n position: 'relative',\n marginBottom: theme.spacing(1),\n overflow: 'hidden',\n },\n\n container: {\n display: 'grid',\n padding: 5,\n position: 'relative',\n },\n overlay: {\n pointerEvents: 'none',\n overflow: 'hidden',\n display: 'flex',\n width: '100%',\n gridRow: '1/2',\n gridColumn: '2/2',\n zIndex: 100, // needs to be below controls\n '& path': {\n cursor: 'crosshair',\n fill: 'none',\n },\n },\n\n content: {\n position: 'relative',\n gridColumn: '2/2',\n gridRow: '1/2',\n },\n\n resizeHandle: {\n height: 4,\n background: '#ccc',\n boxSizing: 'border-box',\n borderTop: '1px solid #fafafa',\n },\n}))\n\ntype Coord = [number, number] | undefined\ninterface Rect {\n left: number\n top: number\n}\n\n// produces offsetX/offsetY coordinates from a clientX and an element's\n// getBoundingClientRect\nfunction getOffset(coord: Coord, rect: Rect) {\n return coord && ([coord[0] - rect.left, coord[1] - rect.top] as Coord)\n}\n\nconst RenderedComponent = observer(({ model }: { model: DotplotViewModel }) => {\n const { classes } = useStyles()\n return (\n

\n {model.tracks.map(track => {\n const [display] = track.displays\n const { RenderingComponent } = display\n return RenderingComponent ? (\n \n ) : null\n })}\n

\n )\n})\n\nconst DotplotViewInternal = observer(function ({\n model,\n}: {\n model: DotplotViewModel\n}) {\n const { classes } = useStyles()\n const [mousecurrClient, setMouseCurrClient] = useState()\n const [mousedownClient, setMouseDownClient] = useState()\n const [mouseOvered, setMouseOvered] = useState(false)\n const [mouseupClient, setMouseUpClient] = useState()\n const ref = useRef(null)\n const root = useRef(null)\n const distanceX = useRef(0)\n const distanceY = useRef(0)\n const scheduled = useRef(false)\n const [ctrlKeyWasUsed, setCtrlKeyWasUsed] = useState(false)\n const [ctrlKeyDown, setCtrlKeyDown] = useState(false)\n const svg = ref.current?.getBoundingClientRect() || blank\n const rootRect = ref.current?.getBoundingClientRect() || blank\n const mousedown = getOffset(mousedownClient, svg)\n const mousecurr = getOffset(mousecurrClient, svg)\n const mouseup = getOffset(mouseupClient, svg)\n const mouserect = mouseup || mousecurr\n const mouserectClient = mouseupClient || mousecurrClient\n const xdistance = mousedown && mouserect ? mouserect[0] - mousedown[0] : 0\n const ydistance = mousedown && mouserect ? mouserect[1] - mousedown[1] : 0\n const { hview, vview, wheelMode, cursorMode } = model\n\n const validPan =\n (cursorMode === 'move' && !ctrlKeyWasUsed) ||\n (cursorMode === 'crosshair' && ctrlKeyWasUsed)\n\n const validSelect =\n (cursorMode === 'move' && ctrlKeyWasUsed) ||\n (cursorMode === 'crosshair' && !ctrlKeyWasUsed)\n\n // use non-React wheel handler to properly prevent body scrolling\n useEffect(() => {\n function onWheel(event: WheelEvent) {\n event.preventDefault()\n\n distanceX.current += event.deltaX\n distanceY.current -= event.deltaY\n if (!scheduled.current) {\n scheduled.current = true\n\n window.requestAnimationFrame(() => {\n transaction(() => {\n if (wheelMode === 'pan') {\n hview.scroll(distanceX.current / 3)\n vview.scroll(distanceY.current / 10)\n } else if (wheelMode === 'zoom') {\n if (\n Math.abs(distanceY.current) > Math.abs(distanceX.current) * 2 &&\n mousecurr\n ) {\n const val = distanceY.current < 0 ? 1.1 : 0.9\n hview.zoomTo(hview.bpPerPx * val, mousecurr[0])\n vview.zoomTo(\n vview.bpPerPx * val,\n rootRect.height - mousecurr[1],\n )\n }\n }\n })\n scheduled.current = false\n distanceX.current = 0\n distanceY.current = 0\n })\n }\n }\n if (ref.current) {\n const curr = ref.current\n curr.addEventListener('wheel', onWheel)\n return () => {\n curr.removeEventListener('wheel', onWheel)\n }\n }\n return () => {}\n }, [hview, vview, wheelMode, mousecurr, rootRect.height])\n\n useEffect(() => {\n function globalMouseMove(event: MouseEvent) {\n setMouseCurrClient([event.clientX, event.clientY])\n\n if (mousecurrClient && mousedownClient && validPan && !mouseupClient) {\n hview.scroll(-event.clientX + mousecurrClient[0])\n vview.scroll(event.clientY - mousecurrClient[1])\n }\n }\n\n window.addEventListener('mousemove', globalMouseMove)\n return () => {\n window.removeEventListener('mousemove', globalMouseMove)\n }\n }, [validPan, mousecurrClient, mousedownClient, mouseupClient, hview, vview])\n\n useEffect(() => {\n function globalCtrlKeyDown(event: KeyboardEvent) {\n if (event.metaKey || event.ctrlKey) {\n setCtrlKeyDown(true)\n }\n }\n function globalCtrlKeyUp(event: KeyboardEvent) {\n if (!event.metaKey && !event.ctrlKey) {\n setCtrlKeyDown(false)\n }\n }\n window.addEventListener('keydown', globalCtrlKeyDown)\n window.addEventListener('keyup', globalCtrlKeyUp)\n return () => {\n window.removeEventListener('keydown', globalCtrlKeyDown)\n window.addEventListener('keyup', globalCtrlKeyUp)\n }\n }, [])\n\n // detect a mouseup after a mousedown was submitted, autoremoves mouseup once\n // that single mouseup is set\n useEffect(() => {\n function globalMouseUp(event: MouseEvent) {\n if (Math.abs(xdistance) > 3 && Math.abs(ydistance) > 3 && validSelect) {\n setMouseUpClient([event.clientX, event.clientY])\n } else {\n setMouseDownClient(undefined)\n }\n }\n if (mousedown && !mouseup) {\n window.addEventListener('mouseup', globalMouseUp, true)\n return () => {\n window.removeEventListener('mouseup', globalMouseUp, true)\n }\n }\n return () => {}\n }, [validSelect, mousedown, mouseup, xdistance, ydistance])\n\n return (\n

\n \n {\n setMouseOvered(false)\n }}\n onMouseEnter={() => {\n setMouseOvered(true)\n }}\n >\n

\n \n \n

\n {mouseOvered && validSelect ? (\n \n \n \n ) : null}\n {validSelect ? (\n \n \n \n ) : null}\n {\n if (event.button === 0) {\n const { clientX, clientY } = event\n setMouseDownClient([clientX, clientY])\n setMouseCurrClient([clientX, clientY])\n setCtrlKeyWasUsed(ctrlKeyDown)\n }\n }}\n >\n \n {validSelect && mousedown && mouserect ? (\n \n ) : null}\n \n

\n \n {\n callback()\n setMouseUpClient(undefined)\n setMouseDownClient(undefined)\n }}\n onClose={() => {\n setMouseUpClient(undefined)\n setMouseDownClient(undefined)\n }}\n anchorReference=\"anchorPosition\"\n anchorPosition={\n mouseupClient\n ? {\n top: mouseupClient[1] + 50,\n left: mouseupClient[0] + 50,\n }\n : undefined\n }\n style={{ zIndex: 10000 }}\n menuItems={[\n {\n label: 'Zoom in',\n onClick: () => {\n if (mousedown && mouseup) {\n model.zoomIn(mousedown, mouseup)\n }\n // below line is needed to prevent tooltip from sticking\n setMouseOvered(false)\n },\n },\n {\n label: 'Open linear synteny view',\n onClick: () => {\n if (mousedown && mouseup) {\n model.onDotplotView(mousedown, mouseup)\n }\n // below line is needed to prevent tooltip from sticking\n setMouseOvered(false)\n },\n },\n ]}\n />\n

\n model.setHeight(model.height + n)}\n className={classes.resizeHandle}\n />\n

\n )\n})\nconst DotplotView = observer(function ({ model }: { model: DotplotViewModel }) {\n const { initialized, loading, error } = model\n\n if ((!initialized && !loading) || error) {\n return \n }\n\n if (loading) {\n return \n }\n\n return \n})\n\nexport default DotplotView\n","import React from 'react'\nimport { observer } from 'mobx-react'\nimport { useTheme } from '@mui/material'\n\n// locals\nimport { DotplotViewModel } from '../model'\nimport { getFillProps, getStrokeProps } from '@jbrowse/core/util'\n\nexport const GridRaw = observer(function ({\n model,\n children,\n}: {\n model: DotplotViewModel\n children?: React.ReactNode\n}) {\n const { viewWidth, viewHeight, hview, vview } = model\n const hblocks = hview.dynamicBlocks.contentBlocks\n const vblocks = vview.dynamicBlocks.contentBlocks\n if (!hblocks.length || !vblocks.length) {\n return null\n }\n const htop = hview.displayedRegionsTotalPx - hview.offsetPx\n const vtop = vview.displayedRegionsTotalPx - vview.offsetPx\n const hbottom = hblocks[0]!.offsetPx - hview.offsetPx\n const vbottom = vblocks[0]!.offsetPx - vview.offsetPx\n const theme = useTheme()\n const stroke = theme.palette.divider\n\n // Uses math.max/min avoid making very large SVG rect offscreen element,\n // which can sometimes fail to draw\n const rx = Math.max(hbottom, 0)\n const ry = Math.max(viewHeight - vtop, 0)\n const w = Math.min(htop - hbottom, viewWidth)\n const h = Math.min(viewHeight - vbottom - ry, viewHeight)\n\n let lastx = Number.POSITIVE_INFINITY\n let lasty = Number.POSITIVE_INFINITY\n return (\n <>\n \n \n {hblocks.map(region => {\n const x = region.offsetPx - hview.offsetPx\n const render = Math.floor(x) !== Math.floor(lastx)\n if (render) {\n lastx = x\n }\n return render ? (\n \n ) : null\n })}\n {vblocks.map(region => {\n const y = viewHeight - (region.offsetPx - vview.offsetPx)\n const render = Math.floor(y) !== Math.floor(lasty)\n if (render) {\n lasty = y\n }\n return render ? (\n \n ) : null\n })}\n \n \n \n {children}\n \n )\n})\n\nexport default function Grid({\n model,\n children,\n}: {\n model: DotplotViewModel\n children?: React.ReactNode\n}) {\n const { viewWidth, viewHeight } = model\n return (\n \n {children}\n \n 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IAnyStateTreeNode } from 'mobx-state-tree'\n\nexport function doAfterAttach(self: T) {\n createAutorun(\n self,\n async () => {\n await fetchChains(self)\n },\n { delay: 1000 },\n )\n}\n","import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter'\nimport { Feature, AugmentedRegion } from '@jbrowse/core/util'\nimport { toArray } from 'rxjs/operators'\nimport { firstValueFrom } from 'rxjs'\nimport { IAnyStateTreeNode, addDisposer, isAlive } from 'mobx-state-tree'\nimport { IAutorunOptions, autorun } from 'mobx'\n\n// get tag from BAM or CRAM feature, where CRAM uses feature.get('tags') and\n// BAM does not\nexport function getTag(feature: Feature, tag: string) {\n const tags = feature.get('tags')\n return tags !== undefined ? tags[tag] : feature.get(tag)\n}\n\n// use fallback alt tag, used in situations where upper case/lower case tags\n// exist e.g. Mm/MM for base modifications\nexport function getTagAlt(feature: Feature, tag: string, alt: string) {\n return getTag(feature, tag) ?? getTag(feature, alt)\n}\n\n// orientation definitions from igv.js, see also\n// https://software.broadinstitute.org/software/igv/interpreting_pair_orientations\nexport const orientationTypes = {\n fr: {\n F1R2: 'LR',\n F2R1: 'LR',\n\n F1F2: 'LL',\n F2F1: 'LL',\n\n R1R2: 'RR',\n R2R1: 'RR',\n\n R1F2: 'RL',\n R2F1: 'RL',\n } as Record,\n\n rf: {\n R1F2: 'LR',\n R2F1: 'LR',\n\n R1R2: 'LL',\n R2R1: 'LL',\n\n F1F2: 'RR',\n F2F1: 'RR',\n\n F1R2: 'RL',\n F2R1: 'RL',\n } as Record,\n\n ff: {\n F2F1: 'LR',\n R1R2: 'LR',\n\n F2R1: 'LL',\n R1F2: 'LL',\n\n R2F1: 'RR',\n F1R2: 'RR',\n\n R2R1: 'RL',\n F1F2: 'RL',\n } as Record,\n}\n\nexport const pairMap = {\n LR: 'color_pair_lr',\n LL: 'color_pair_ll',\n RR: 'color_pair_rr',\n RL: 'color_pair_rl',\n} as const\n\nexport function getColorWGBS(strand: number, base: string) {\n if (strand === 1) {\n if (base === 'C') {\n return '#f00'\n }\n if (base === 'T') {\n return '#00f'\n }\n } else if (strand === -1) {\n if (base === 'G') {\n return '#f00'\n }\n if (base === 'A') {\n return '#00f'\n }\n }\n return '#888'\n}\n\n// fetches region sequence augmenting by +/- 1bp for CpG on either side of\n// requested region\nexport async function fetchSequence(\n region: AugmentedRegion,\n adapter: BaseFeatureDataAdapter,\n) {\n const { start, end, originalRefName, refName } = region\n\n const feats = await firstValueFrom(\n adapter\n .getFeatures({\n ...region,\n refName: originalRefName || refName,\n end: end + 1,\n start: Math.max(0, start - 1),\n })\n .pipe(toArray()),\n )\n return feats[0]?.get('seq')\n}\n\n// has to check underlying C-G (aka CpG) on the reference sequence\nexport function shouldFetchReferenceSequence(type?: string) {\n return type === 'methylation'\n}\n\n// adapted from IGV\n// https://github.com/igvteam/igv/blob/e803e3af2d8c9ea049961dfd4628146bdde9a574/src/main/java/org/broad/igv/sam/mods/BaseModificationColors.java#L27\nexport const modificationColors = {\n m: 'rgb(255,0,0)',\n h: 'rgb(11, 132, 165)',\n o: 'rgb(111, 78, 129)',\n f: 'rgb(246, 200, 95)',\n c: 'rgb(157, 216, 102)',\n g: 'rgb(255, 160, 86)',\n e: 'rgb(141, 221, 208)',\n b: 'rgb(202, 71, 47)',\n} as Record\n\ntype DisplayModel = IAnyStateTreeNode & { setError: (arg: unknown) => void }\n\nexport function createAutorun(\n self: DisplayModel,\n cb: () => Promise,\n opts?: IAutorunOptions,\n) {\n addDisposer(\n self,\n autorun(async () => {\n try {\n await cb()\n } catch (e) {\n if (isAlive(self)) {\n self.setError(e)\n }\n }\n }, opts),\n )\n}\nexport function randomColor() {\n return `hsl(${Math.random() * 200}, 50%, 50%)`\n}\n","import {\n dedupe,\n Feature,\n getContainingTrack,\n getContainingView,\n getSession,\n} from '@jbrowse/core/util'\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport { LinearArcDisplayModel } from './model'\n\ntype LGV = LinearGenomeViewModel\n\nexport interface ReducedFeature {\n name: string\n strand: number\n refName: string\n start: number\n end: 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resolve from '@jridgewell/resolve-uri'\n\nexport async function readJSON(url, readFile, options = {}) {\n const { defaultContent = {} } = options\n let str\n try {\n str = await readFile(url, { encoding: 'utf8' })\n return JSON.parse(str)\n } catch (error) {\n if (\n error.code === 'ENOENT' ||\n error.status === 404 ||\n error.message.includes('404') ||\n error.message.includes('ENOENT')\n ) {\n return defaultContent\n }\n throw error\n }\n}\n\nexport function foo() {}\n\nexport function newURL(arg: string, base?: string = '.') {\n return resolve(arg, base)\n}\n","//@ts-nocheck\nimport QuickLRU from 'quick-lru'\nimport AbortablePromiseCache from '@gmod/abortable-promise-cache'\nimport { newURL, readJSON } from './util'\n\nexport default class NCList {\n constructor({ readFile, cacheSize = 100 }) {\n this.topList = []\n this.chunkCache = new AbortablePromiseCache({\n cache: new QuickLRU({ maxSize: cacheSize }),\n fill: this.readChunkItems.bind(this),\n })\n this.readFile = readFile\n if (!this.readFile) {\n throw new Error(`must provide a \"readFile\" function`)\n }\n }\n\n importExisting(nclist, attrs, baseURL, lazyUrlTemplate, lazyClass) {\n this.topList = nclist\n this.attrs = attrs\n this.start = attrs.makeFastGetter('Start')\n this.end = attrs.makeFastGetter('End')\n this.lazyClass = lazyClass\n this.baseURL = baseURL\n this.lazyUrlTemplate = lazyUrlTemplate\n }\n\n binarySearch(arr, item, getter) {\n let low = -1\n let high = arr.length\n let mid\n\n while (high - low > 1) {\n mid = (low + high) >>> 1\n if (getter(arr[mid]) >= item) {\n high = mid\n } else {\n low = mid\n }\n }\n\n // if we're iterating rightward, return the high index;\n // if leftward, the low index\n if (getter === this.end) {\n return high\n }\n return low\n }\n\n readChunkItems(chunkNum) {\n const url = newURL(\n this.lazyUrlTemplate.replace(/\\{Chunk\\}/gi, chunkNum),\n this.baseURL,\n )\n return readJSON(url, this.readFile, { defaultContent: [] })\n }\n\n async *iterateSublist(arr, from, to, inc, searchGet, testGet, path) {\n const getChunk = this.attrs.makeGetter('Chunk')\n const getSublist = this.attrs.makeGetter('Sublist')\n\n const pendingPromises = []\n for (\n let i = this.binarySearch(arr, from, searchGet);\n i < arr.length && i >= 0 && inc * testGet(arr[i]) < inc * to;\n i += inc\n ) {\n if (arr[i][0] === this.lazyClass) {\n // this is a lazily-loaded chunk of the nclist\n const chunkNum = getChunk(arr[i])\n const chunkItemsP = this.chunkCache\n .get(chunkNum, chunkNum)\n .then(item => [item, chunkNum])\n pendingPromises.push(chunkItemsP)\n } else {\n // this is just a regular feature\n yield [arr[i], path.concat(i)]\n }\n\n // if this node has a contained sublist, process that too\n const sublist = getSublist(arr[i])\n if (sublist) {\n yield* this.iterateSublist(\n sublist,\n from,\n to,\n inc,\n searchGet,\n testGet,\n path.concat(i),\n )\n }\n }\n\n for (let i = 0; i < pendingPromises.length; i += 1) {\n const [item, chunkNum] = await pendingPromises[i]\n if (item) {\n yield* this.iterateSublist(item, from, to, inc, searchGet, testGet, [\n ...path,\n chunkNum,\n ])\n }\n }\n }\n\n async *iterate(from, to) {\n // calls the given function once for each of the\n // intervals that overlap the given interval\n // if from <= to, iterates left-to-right, otherwise iterates right-to-left\n\n // inc: iterate leftward or rightward\n const inc = from > to ? -1 : 1\n // searchGet: search on start or end\n const searchGet = from > to ? this.start : this.end\n // testGet: test on start or end\n const testGet = from > to ? this.end : this.start\n\n if (this.topList.length > 0) {\n yield* this.iterateSublist(\n this.topList,\n from,\n to,\n inc,\n searchGet,\n testGet,\n [0],\n )\n }\n }\n\n async histogram(from, to, numBins) {\n // calls callback with a histogram of the feature density\n // in the given interval\n\n const result = new Array(numBins)\n result.fill(0)\n const binWidth = (to - from) / numBins\n for await (const feat of this.iterate(from, to)) {\n const firstBin = Math.max(0, ((this.start(feat) - from) / binWidth) | 0)\n const lastBin = Math.min(\n numBins,\n ((this.end(feat) - from) / binWidth) | 0,\n )\n for (let bin = firstBin; bin <= lastBin; bin += 1) {\n result[bin] += 1\n }\n }\n return result\n }\n}\n","//@ts-nocheck\n/**\n * @class ArrayRepr\n *\n * Class for operating on indexed array representations of objects.\n *\n * For example, if we have a lot of objects with similar attributes, e.g.:\n *\n *

\n *     [\n *         {start: 1, end: 2, strand: -1},\n *         {start: 5, end: 6, strand: 1},\n *         ...\n *     ]\n *

\n *\n * @description\n * we can represent them more compactly (e.g., in JSON) something like this:\n *\n *

\n *     class = [\"start\", \"end\", \"strand\"]\n *     [\n *         [1, 2, -1],\n *         [5, 6, 1],\n *         ...\n *     ]\n *

\n *\n * If we want to represent a few different kinds of objects in our big list,\n * we can have multiple \"class\" arrays, and tag each object to identify\n * which \"class\" array describes it.\n *\n * For example, if we have a lot of instances of a few types of objects,\n * like this:\n *\n *

\n *     [\n *         {start: 1, end: 2, strand: 1, id: 1},\n *         {start: 5, end: 6, strand: 1, id: 2},\n *         ...\n *         {start: 10, end: 20, chunk: 1},\n *         {start: 30, end: 40, chunk: 2},\n *         ...\n *     ]\n *

\n *\n * We could use the first array position to indicate the \"class\" for the\n * object, like this:\n *\n *

\n *     classes = [[\"start\", \"end\", \"strand\", \"id\"], [\"start\", \"end\", \"chunk\"]]\n *     [\n *         [0, 1, 2, 1, 1],\n *         [0, 5, 6, 1, 2],\n *         ...\n *         [1, 10, 20, 1],\n *         [1, 30, 40, 1]\n *     ]\n *

\n *\n * Also, if we occasionally want to add an ad-hoc attribute, we could just\n * stick an optional dictionary onto the end:\n *\n *

\n *     classes = [[\"start\", \"end\", \"strand\", \"id\"], [\"start\", \"end\", \"chunk\"]]\n *     [\n *         [0, 1, 2, 1, 1],\n *         [0, 5, 6, 1, 2, {foo: 1}]\n *     ]\n *

\n *\n * Given that individual objects are being represented by arrays, generic\n * code needs some way to differentiate arrays that are meant to be objects\n * from arrays that are actually meant to be arrays.\n * So for each class, we include a dict with : true mappings\n * for each attribute that is meant to be an array.\n *\n * Also, in cases where some attribute values are the same for all objects\n * in a particular set, it may be convenient to define a \"prototype\"\n * with default values for all objects in the set\n *\n * In the end, we get something like this:\n *\n *

\n *     classes=[\n *         {'attributes': ['Start', 'End', 'Subfeatures'],\n *          'proto': {'Chrom': 'chr1'},\n *          'isArrayAttr': {Subfeatures: true}}\n *         ]\n *

\n *\n * That's what this class facilitates.\n */\nclass ArrayRepr {\n constructor(classes) {\n this.classes = classes\n this.fields = []\n for (let cl = 0; cl < classes.length; cl += 1) {\n this.fields[cl] = {}\n for (let f = 0; f < classes[cl].attributes.length; f += 1) {\n this.fields[cl][classes[cl].attributes[f]] = f + 1\n }\n if (classes[cl].proto === undefined) {\n classes[cl].proto = {}\n }\n if (classes[cl].isArrayAttr === undefined) {\n classes[cl].isArrayAttr = {}\n }\n }\n }\n\n /**\n * @private\n */\n attrIndices(attr) {\n return this.classes.map(\n x =>\n x.attributes.indexOf(attr) + 1 ||\n x.attributes.indexOf(attr.toLowerCase()) + 1 ||\n undefined,\n )\n }\n\n get(obj, attr) {\n if (attr in this.fields[obj[0]]) {\n return obj[this.fields[obj[0]][attr]]\n }\n\n // try lowercase\n const lcattr = attr.toLowerCase()\n if (lcattr in this.fields[obj[0]]) {\n return obj[this.fields[obj[0]][lcattr]]\n }\n\n const adhocIndex = this.classes[obj[0]].attributes.length + 1\n if (adhocIndex >= obj.length || !(attr in obj[adhocIndex])) {\n if (attr in this.classes[obj[0]].proto) {\n return this.classes[obj[0]].proto[attr]\n }\n return undefined\n }\n return obj[adhocIndex][attr]\n }\n\n makeSetter(attr) {\n return (obj, val) => {\n this.set(obj, attr, val)\n }\n }\n\n makeGetter(attr) {\n return obj => {\n return this.get(obj, attr)\n }\n }\n\n makeFastGetter(attr) {\n // can be used only if attr is guaranteed to be in\n // the \"classes\" array for this object\n const indices = this.attrIndices(attr)\n return function get(obj) {\n if (indices[obj[0]] !== undefined) {\n return obj[indices[obj[0]]]\n }\n return undefined\n }\n }\n\n // construct(self, obj, klass) {\n // const result = new Array(self.classes[klass].length)\n // Object.keys(obj).forEach(attr => {\n // this.set(result, attr, obj[attr])\n // })\n // return result\n // }\n\n /**\n * Returns fast pre-compiled getter and setter functions for use with\n * Arrays that use this representation.\n * When the returned get and set functions are\n * added as methods to an Array that contains data in this\n * representation, they provide fast access by name to the data.\n *\n * @returns {Object} { get: function() {...}, set: function(val) {...} }\n *\n * @example\n * var accessors = attrs.accessors();\n * var feature = get_feature_from_someplace();\n * feature.get = accessors.get;\n * // print out the feature start and end\n * console.log( feature.get('start') + ',' + feature.get('end') );\n */\n accessors() {\n if (!this._accessors) {\n this._accessors = this._makeAccessors()\n }\n return this._accessors\n }\n\n /**\n * @private\n */\n _makeAccessors() {\n const indices = {}\n\n const accessors = {\n get(field) {\n const f = this.get.field_accessors[field.toLowerCase()]\n if (f) {\n return f.call(this)\n }\n return undefined\n },\n set(field, val) {\n const f = this.set.field_accessors[field]\n if (f) {\n return f.call(this, val)\n }\n return undefined\n },\n tags() {\n return tags[this[0]] || []\n },\n }\n accessors.get.field_accessors = {}\n accessors.set.field_accessors = {}\n\n // make a data structure as: { attr_name: [offset,offset,offset], }\n // that will be convenient for finding the location of the attr\n // for a given class like: indexForAttr{attrname}[classnum]\n this.classes.forEach((cdef, classnum) => {\n ;(cdef.attributes || []).forEach((attrname, offset) => {\n indices[attrname] = indices[attrname] || []\n indices[attrname][classnum] = offset + 1\n\n attrname = attrname.toLowerCase()\n\n indices[attrname] = indices[attrname] || []\n indices[attrname][classnum] = offset + 1\n })\n })\n\n // lowercase all the class attributes\n const tags = this.classes.map(c => c.attributes)\n\n // use that to make precalculated get and set accessors for each field\n Object.keys(indices).forEach(attrname => {\n const attrIndices = indices[attrname]\n // get\n accessors.get.field_accessors[attrname] = !attrIndices\n ? function get() {\n return undefined\n }\n : function get() {\n return this[attrIndices[this[0]]]\n }\n\n // // set\n // accessors.set.field_accessors[attrname] = !attrIndices\n // ? () => undefined\n // : v => {\n // this[attrIndices[this[0]]] = v\n // return v\n // }\n })\n\n return accessors\n }\n}\nexport default ArrayRepr\n\n/*\n\nCopyright (c) 2007-2010 The Evolutionary Software Foundation\n\nCreated by Mitchell Skinner \n\nThis package and its accompanying libraries are free software; you can\nredistribute it and/or modify it under the terms of the LGPL (either\nversion 2.1, or at your option, any later version) or the Artistic\nLicense 2.0. Refer to LICENSE for the full license text.\n\n*/\n","//@ts-nocheck\nimport QuickLRU from 'quick-lru'\nimport AbortablePromiseCache from '@gmod/abortable-promise-cache'\nimport { newURL, readJSON } from './util'\n\n/**\n * For a JSON array that gets too large to load in one go, this class\n * helps break it up into chunks and provides an\n * async API for using the information in the array.\n */\nexport default class LazyArray {\n constructor(\n { urlTemplate, chunkSize, length, cacheSize = 100, readFile },\n baseUrl,\n ) {\n this.urlTemplate = urlTemplate\n this.chunkSize = chunkSize\n this.length = length\n this.baseUrl = baseUrl === undefined ? '' : baseUrl\n this.readFile = readFile\n if (!readFile) {\n throw new Error('must provide readFile callback')\n }\n this.chunkCache = new AbortablePromiseCache({\n cache: new QuickLRU({ maxSize: cacheSize }),\n fill: this.getChunk.bind(this),\n })\n }\n\n /**\n * call the callback on one element of the array\n * @param i index\n * @param callback callback, gets called with (i, value, param)\n * @param param (optional) callback will get this as its last parameter\n */\n index(i, callback, param) {\n this.range(i, i, callback, undefined, param)\n }\n\n /**\n * async generator for the elements in the range [start,end]\n *\n * @param start index of first element to call the callback on\n * @param end index of last element to call the callback on\n */\n async *range(start, end) {\n start = Math.max(0, start)\n end = Math.min(end, this.length - 1)\n\n const firstChunk = Math.floor(start / this.chunkSize)\n const lastChunk = Math.floor(end / this.chunkSize)\n\n const chunkreadFiles = []\n for (let chunk = firstChunk; chunk <= lastChunk; chunk += 1) {\n chunkreadFiles.push(this.chunkCache.get(chunk, chunk))\n }\n for (let i = 0; i < chunkreadFiles.length; i += 1) {\n const [chunkNumber, chunkData] = await chunkreadFiles[i]\n yield* this.filterChunkData(start, end, chunkNumber, chunkData)\n }\n }\n\n async getChunk(chunkNumber) {\n let url = this.urlTemplate.replace(/\\{Chunk\\}/gi, chunkNumber)\n if (this.baseUrl) {\n url = newURL(url, this.baseUrl)\n }\n const data = await readJSON(url, this.readFile)\n return [chunkNumber, data]\n }\n\n *filterChunkData(queryStart, queryEnd, chunkNumber, chunkData) {\n // index (in the overall lazy array) of the first position in this chunk\n const firstIndex = chunkNumber * this.chunkSize\n const chunkStart = Math.max(0, queryStart - firstIndex)\n const chunkEnd = Math.min(queryEnd - firstIndex, this.chunkSize - 1)\n for (let i = chunkStart; i <= chunkEnd; i += 1) {\n yield [i + firstIndex, chunkData[i]]\n }\n }\n}\n","//@ts-nocheck\nimport QuickLRU from 'quick-lru'\nimport AbortablePromiseCache from '@gmod/abortable-promise-cache'\n\nimport GenericNCList from './nclist'\nimport ArrayRepr from './array_representation'\nimport LazyArray from './lazy_array'\nimport { newURL, readJSON } from './util'\n\nfunction idfunc() {\n return this._uniqueID\n}\nfunction parentfunc() {\n return this._parent\n}\nfunction childrenfunc() {\n return this.get('subfeatures')\n}\n\n/**\n * Sequence feature store using nested containment\n * lists held in JSON files that are lazily read.\n *\n * @param {object} args constructor args\n * @param {string} args.baseUrl base URL for resolving relative URLs\n * @param {string} args.urlTemplate Template string for\n * the root file of each reference sequence. The reference sequence\n * name will be interpolated into this string where `{refseq}` appears.\n * @param {function} args.readFile function to use for reading remote from URLs.\n */\nexport default class NCListStore {\n constructor({ baseUrl, urlTemplate, readFile, cacheSize = 10 }) {\n this.baseUrl = baseUrl\n this.urlTemplates = { root: urlTemplate }\n\n this.readFile = readFile\n if (!this.readFile) {\n throw new Error(`must provide a \"readFile\" function argument`)\n }\n\n this.dataRootCache = new AbortablePromiseCache({\n cache: new QuickLRU({ maxSize: cacheSize }),\n fill: this.fetchDataRoot.bind(this),\n })\n }\n\n makeNCList() {\n return new GenericNCList({ readFile: this.readFile })\n }\n\n loadNCList(refData, trackInfo, listUrl) {\n refData.nclist.importExisting(\n trackInfo.intervals.nclist,\n refData.attrs,\n listUrl,\n trackInfo.intervals.urlTemplate,\n trackInfo.intervals.lazyClass,\n )\n }\n\n getDataRoot(refName) {\n return this.dataRootCache.get(refName, refName)\n }\n\n fetchDataRoot(refName) {\n const url = newURL(\n this.urlTemplates.root.replace(/{\\s*refseq\\s*}/g, refName),\n this.baseUrl,\n )\n\n // fetch the trackdata\n return readJSON(url, this.readFile).then(trackInfo =>\n // trackInfo = JSON.parse( trackInfo );\n this.parseTrackInfo(trackInfo, url),\n )\n }\n\n parseTrackInfo(trackInfo, url) {\n const refData = {\n nclist: this.makeNCList(),\n stats: {\n featureCount: trackInfo.featureCount || 0,\n },\n }\n\n if (trackInfo.intervals) {\n refData.attrs = new ArrayRepr(trackInfo.intervals.classes)\n this.loadNCList(refData, trackInfo, url)\n }\n\n const { histograms } = trackInfo\n if (histograms && histograms.meta) {\n for (let i = 0; i < histograms.meta.length; i += 1) {\n histograms.meta[i].lazyArray = new LazyArray(\n { ...histograms.meta[i].arrayParams, readFile: this.readFile },\n url,\n )\n }\n refData._histograms = histograms\n }\n\n // parse any strings in the histogram data that look like numbers\n if (refData._histograms) {\n Object.keys(refData._histograms).forEach(key => {\n const entries = refData._histograms[key]\n entries.forEach(entry => {\n Object.keys(entry).forEach(key2 => {\n if (\n typeof entry[key2] === 'string' &&\n String(Number(entry[key2])) === entry[key2]\n ) {\n entry[key2] = Number(entry[key2])\n }\n })\n })\n })\n }\n\n return refData\n }\n\n async getRegionStats(query) {\n const data = await this.getDataRoot(query.ref)\n return data.stats\n }\n\n /**\n * fetch binned counts of feature coverage in the given region.\n *\n * @param {object} query\n * @param {string} query.refName reference sequence name\n * @param {number} query.start region start\n * @param {number} query.end region end\n * @param {number} query.numBins number of bins desired in the feature counts\n * @param {number} query.basesPerBin number of bp desired in each feature counting bin\n * @returns {object} as:\n * `{ bins: hist, stats: statEntry }`\n */\n async getRegionFeatureDensities({\n refName,\n start,\n end,\n numBins,\n basesPerBin,\n }) {\n const data = await this.getDataRoot(refName)\n if (numBins) {\n basesPerBin = (end - start) / numBins\n } else if (basesPerBin) {\n numBins = Math.ceil((end - start) / basesPerBin)\n } else {\n throw new TypeError(\n 'numBins or basesPerBin arg required for getRegionFeatureDensities',\n )\n }\n\n // pick the relevant entry in our pre-calculated stats\n const stats = data._histograms.stats || []\n const statEntry = stats.find(entry => entry.basesPerBin >= basesPerBin)\n\n // The histogramMeta array describes multiple levels of histogram detail,\n // going from the finest (smallest number of bases per bin) to the\n // coarsest (largest number of bases per bin).\n // We want to use coarsest histogramMeta that's at least as fine as the\n // one we're currently rendering.\n // TODO: take into account that the histogramMeta chosen here might not\n // fit neatly into the current histogram (e.g., if the current histogram\n // is at 50,000 bases/bin, and we have server histograms at 20,000\n // and 2,000 bases/bin, then we should choose the 2,000 histogramMeta\n // rather than the 20,000)\n let histogramMeta = data._histograms.meta[0]\n for (let i = 0; i < data._histograms.meta.length; i += 1) {\n if (basesPerBin >= data._histograms.meta[i].basesPerBin) {\n histogramMeta = data._histograms.meta[i]\n }\n }\n\n // number of bins in the server-supplied histogram for each current bin\n let binRatio = basesPerBin / histogramMeta.basesPerBin\n\n // if the server-supplied histogram fits neatly into our requested\n if (binRatio > 0.9 && Math.abs(binRatio - Math.round(binRatio)) < 0.0001) {\n // console.log('server-supplied',query);\n // we can use the server-supplied counts\n const firstServerBin = Math.floor(start / histogramMeta.basesPerBin)\n binRatio = Math.round(binRatio)\n const histogram = []\n for (let bin = 0; bin < numBins; bin += 1) {\n histogram[bin] = 0\n }\n\n for await (const [i, val] of histogramMeta.lazyArray.range(\n firstServerBin,\n firstServerBin + binRatio * numBins - 1,\n )) {\n // this will count features that span the boundaries of\n // the original histogram multiple times, so it's not\n // perfectly quantitative. Hopefully it's still useful, though.\n histogram[Math.floor((i - firstServerBin) / binRatio)] += val\n }\n return { bins: histogram, stats: statEntry }\n }\n // console.log('make own',query);\n // make our own counts\n const hist = await data.nclist.histogram(start, end, numBins)\n return { bins: hist, stats: statEntry }\n }\n\n /**\n * Fetch features in a given region. This method is an asynchronous generator\n * yielding feature objects.\n *\n * @param {object} args\n * @param {string} args.refName reference sequence name\n * @param {number} args.start start of region. 0-based half-open.\n * @param {number} args.end end of region. 0-based half-open.\n * @yields {object}\n */\n async *getFeatures({ refName, start, end }) {\n const data = await this.getDataRoot(refName)\n const accessors = data.attrs && data.attrs.accessors()\n for await (const [feature, path] of data.nclist.iterate(start, end)) {\n // the unique ID is a stringification of the path in the\n // NCList where the feature lives; it's unique across the\n // top-level NCList (the top-level NCList covers a\n // track/chromosome combination)\n\n // only need to decorate a feature once\n if (!feature.decorated) {\n const uniqueID = path.join(',')\n this.decorateFeature(accessors, feature, `${refName},${uniqueID}`)\n }\n yield feature\n }\n }\n\n // helper method to recursively add .get and .tags methods to a feature and its\n // subfeatures\n decorateFeature(accessors, feature, id, parent) {\n feature.get = accessors.get\n feature.tags = accessors.tags\n feature._uniqueID = id\n feature.id = idfunc\n feature._parent = parent\n feature.parent = parentfunc\n feature.children = childrenfunc\n ;(feature.get('subfeatures') || []).forEach((f, i) => {\n this.decorateFeature(accessors, f, `${id}-${i}`, feature)\n })\n feature.decorated = true\n }\n}\n","//@ts-nocheck\nimport NCListStore from './feature_store'\n\nexport default NCListStore\n","import {\n Feature,\n SimpleFeatureSerialized,\n} from '@jbrowse/core/util/simpleFeature'\n\nconst jb2ToJb1 = { refName: 'seq_id' }\n\nconst jb1ToJb2 = { seq_id: 'refName' }\n\n/**\n * wrapper to adapt nclist features to act like jbrowse 2 features\n */\nexport default class NCListFeature implements Feature {\n private parentHandle?: Feature\n\n private uniqueId: string\n\n constructor(\n private ncFeature: any,\n parent?: Feature,\n id?: string,\n ) {\n this.uniqueId = id || ncFeature.id()\n this.parentHandle = parent\n }\n\n set(): void {\n throw new Error('not implemented')\n }\n\n jb2TagToJb1Tag(tag: string): string {\n // @ts-expect-error\n const mapped = jb2ToJb1[tag] || tag\n return mapped.toLowerCase()\n }\n\n jb1TagToJb2Tag(tag: string): string {\n const t = tag.toLowerCase()\n // @ts-expect-error\n return jb1ToJb2[t] || t\n }\n\n get(attrName: string): any {\n const attr = this.ncFeature.get(this.jb2TagToJb1Tag(attrName))\n if (attr && attrName === 'subfeatures') {\n return attr.map((subfeature: any) => new NCListFeature(subfeature, this))\n }\n return attr\n }\n\n /**\n * Get an array listing which data keys are present in this feature.\n */\n tags(): string[] {\n return this.ncFeature.tags().map((t: string) => this.jb1TagToJb2Tag(t))\n }\n\n /**\n * Get the unique ID of this feature.\n */\n id(): string {\n return this.uniqueId\n }\n\n /**\n * Get this feature's parent feature, or undefined if none.\n */\n parent(): Feature | undefined {\n return this.parentHandle\n }\n\n /**\n * Get an array of child features, or undefined if none.\n */\n children(): Feature[] | undefined {\n return this.get('subfeatures')\n }\n\n toJSON(): SimpleFeatureSerialized {\n // @ts-expect-error\n const data: SimpleFeatureSerialized = { uniqueId: this.id() }\n\n this.ncFeature.tags().forEach((tag: string) => {\n const mappedTag = this.jb1TagToJb2Tag(tag)\n const value = this.ncFeature.get(tag)\n if (mappedTag === 'subfeatures') {\n data.subfeatures = (value || []).map((f: Feature) => {\n // note: was new NCListFeature(f, `${this.id()}-${i}`, this).toJSON()\n return new NCListFeature(f, this).toJSON()\n })\n } else {\n data[mappedTag] = value\n }\n })\n return data\n }\n}\n","import NCListStore from '@gmod/nclist'\nimport { Region } from '@jbrowse/core/util/types'\nimport {\n BaseFeatureDataAdapter,\n BaseOptions,\n} from '@jbrowse/core/data_adapters/BaseAdapter'\nimport { Feature } from '@jbrowse/core/util/simpleFeature'\nimport { ObservableCreate } from '@jbrowse/core/util/rxjs'\nimport { checkAbortSignal } from '@jbrowse/core/util'\nimport { RemoteFile } from 'generic-filehandle'\nimport NCListFeature from './NCListFeature'\nimport PluginManager from '@jbrowse/core/PluginManager'\nimport { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache'\nimport { AnyConfigurationModel } from '@jbrowse/core/configuration'\n\nexport default class NCListAdapter extends BaseFeatureDataAdapter {\n private nclist: any\n\n private configRefNames?: string[]\n\n constructor(\n config: AnyConfigurationModel,\n getSubAdapter?: getSubAdapterType,\n pluginManager?: PluginManager,\n ) {\n super(config, getSubAdapter, pluginManager)\n const refNames = this.getConf('refNames')\n const rootUrlTemplate = this.getConf('rootUrlTemplate')\n this.configRefNames = refNames\n\n this.nclist = new NCListStore({\n baseUrl: '',\n urlTemplate: rootUrlTemplate.uri,\n readFile: (url: string) =>\n new RemoteFile(\n String(\n rootUrlTemplate.baseUri\n ? new URL(url, rootUrlTemplate.baseUri).toString()\n : url,\n ),\n ).readFile(),\n })\n }\n\n /**\n * Fetch features for a certain region. Use getFeaturesInRegion() if you also\n * want to verify that the store has features for the given reference sequence\n * before fetching.\n * @param region -\n * @param opts - [signal] optional signalling object for aborting the fetch\n * @returns Observable of Feature objects in the region\n */\n getFeatures(region: Region, opts: BaseOptions = {}) {\n return ObservableCreate(async observer => {\n const { signal } = opts\n for await (const feature of this.nclist.getFeatures(region, opts)) {\n checkAbortSignal(signal)\n observer.next(this.wrapFeature(feature))\n }\n observer.complete()\n })\n }\n\n wrapFeature(ncFeature: any): NCListFeature {\n return new NCListFeature(\n ncFeature,\n undefined,\n `${this.id}-${ncFeature.id()}`,\n )\n }\n\n async hasDataForRefName(refName: string) {\n const root = await this.nclist.getDataRoot(refName)\n return !!root?.stats?.featureCount\n }\n\n /**\n * NCList is unable to get list of ref names so returns empty\n */\n async getRefNames() {\n return this.configRefNames || []\n }\n\n /**\n * called to provide a hint that data tied to a certain region\n * will not be needed for the foreseeable future and can be purged\n * from caches, etc\n */\n freeResources() {}\n}\n","class NullSignal {}\n\n/**\n * aggregates a number of abort signals, will only fire the aggregated\n * abort if all of the input signals have been aborted\n */\nexport default class AggregateAbortController {\n signals = new Set()\n abortController = new AbortController()\n\n /**\n * @param {AbortSignal} [signal] optional AbortSignal to add. if falsy,\n * will be treated as a null-signal, and this abortcontroller will no\n * longer be abortable.\n */\n //@ts-ignore\n addSignal(signal: AbortSignal = new NullSignal()): void {\n if (this.signal.aborted) {\n throw new Error('cannot add a signal, already aborted!')\n }\n\n // note that a NullSignal will never fire, so if we\n // have one this thing will never actually abort\n this.signals.add(signal)\n if (signal.aborted) {\n // handle the abort immediately if it is already aborted\n // for some reason\n this.handleAborted(signal)\n } else if (typeof signal.addEventListener === 'function') {\n signal.addEventListener('abort', () => {\n this.handleAborted(signal)\n })\n }\n }\n\n handleAborted(signal: AbortSignal): void {\n this.signals.delete(signal)\n if (this.signals.size === 0) {\n this.abortController.abort()\n }\n }\n\n get signal(): AbortSignal {\n return this.abortController.signal\n }\n\n abort(): void {\n this.abortController.abort()\n }\n}\n","export default class AggregateStatusReporter {\n callbacks = new Set()\n currentMessage: unknown\n\n addCallback(callback: Function = () => {}): void {\n this.callbacks.add(callback)\n callback(this.currentMessage)\n }\n\n callback(message: unknown) {\n this.currentMessage = message\n for (const elt of this.callbacks) {\n elt(message)\n }\n }\n}\n","import AggregateAbortController from './AggregateAbortController'\nimport AggregateStatusReporter from './AggregateStatusReporter'\n\ninterface Cache {\n delete: (key: string) => void\n keys: () => Iterator\n get: (key: string) => U | undefined\n set: (key: string, value: U) => void\n has: (key: string) => boolean\n}\ntype FillCallback = (\n data: T,\n signal?: AbortSignal,\n statusCallback?: Function,\n) => Promise\n\ninterface Entry {\n aborter: AggregateAbortController\n settled: boolean\n readonly aborted: boolean\n statusReporter: AggregateStatusReporter\n promise: Promise\n}\nexport default class AbortablePromiseCache {\n /**\n * @param {object} args constructor args\n * @param {Function} args.fill fill callback, will be called with sig `fill(data, signal)`\n * @param {object} args.cache backing store to use, must implement `get(key)`, `set(key, val)`,\n * `delete(key)`, and `keys() -> iterator`\n */\n\n private cache: Cache>\n private fillCallback: FillCallback\n\n constructor({\n fill,\n cache,\n }: {\n fill: FillCallback\n cache: Cache>\n }) {\n if (typeof fill !== 'function') {\n throw new TypeError('must pass a fill function')\n }\n if (typeof cache !== 'object') {\n throw new TypeError('must pass a cache object')\n }\n if (\n typeof cache.get !== 'function' ||\n typeof cache.set !== 'function' ||\n typeof cache.delete !== 'function'\n ) {\n throw new TypeError(\n 'cache must implement get(key), set(key, val), and and delete(key)',\n )\n }\n\n this.cache = cache\n this.fillCallback = fill\n }\n\n static isAbortException(exception: Error) {\n return (\n // DOMException\n exception.name === 'AbortError' ||\n // standard-ish non-DOM abort exception\n //@ts-ignore\n exception.code === 'ERR_ABORTED' ||\n // stringified DOMException\n exception.message === 'AbortError: aborted' ||\n // stringified standard-ish exception\n exception.message === 'Error: aborted'\n )\n }\n\n evict(key: string, entry: Entry) {\n if (this.cache.get(key) === entry) {\n this.cache.delete(key)\n }\n }\n\n fill(key: string, data: T, signal?: AbortSignal, statusCallback?: Function) {\n const aborter = new AggregateAbortController()\n const statusReporter = new AggregateStatusReporter()\n statusReporter.addCallback(statusCallback)\n const newEntry: Entry = {\n aborter: aborter,\n promise: this.fillCallback(data, aborter.signal, (message: unknown) => {\n statusReporter.callback(message)\n }),\n settled: false,\n statusReporter,\n get aborted() {\n return this.aborter.signal.aborted\n },\n }\n newEntry.aborter.addSignal(signal)\n\n // remove the fill from the cache when its abortcontroller fires, if still in there\n newEntry.aborter.signal.addEventListener('abort', () => {\n if (!newEntry.settled) {\n this.evict(key, newEntry)\n }\n })\n\n // chain off the cached promise to record when it settles\n newEntry.promise\n .then(\n () => {\n newEntry.settled = true\n },\n () => {\n newEntry.settled = true\n\n // if the fill throws an error (including abort) and is still in the cache, remove it\n this.evict(key, newEntry)\n },\n )\n .catch(error 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React, { useState } from 'react'\nimport {\n Button,\n DialogContent,\n DialogActions,\n FormControlLabel,\n FormControl,\n FormLabel,\n Radio,\n RadioGroup,\n TextField,\n TextFieldProps,\n} from '@mui/material'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\n\n// locals\nimport { SequenceFeatureDetailsModel } from '../model'\n\nconst useStyles = makeStyles()(theme => ({\n formElt: {\n margin: theme.spacing(3),\n width: 400,\n },\n dialogContent: {\n width: '80em',\n },\n root: {\n padding: 4,\n },\n}))\n\nfunction TextField2(props: TextFieldProps) {\n return (\n

\n \n

\n )\n}\n\nfunction FormControl2({ children }: { children: React.ReactNode }) {\n return (\n

\n {children}\n

\n )\n}\n\nconst SequenceFeatureSettingsDialog = observer(function ({\n handleClose,\n model,\n}: {\n handleClose: () => void\n model: SequenceFeatureDetailsModel\n}) {\n const { classes } = useStyles()\n const { upperCaseCDS } = model\n const [intronBp, setIntronBp] = useState(`${model.intronBp}`)\n const [upDownBp, setUpDownBp] = useState(`${model.upDownBp}`)\n const intronBpValid = !Number.isNaN(+intronBp)\n const upDownBpValid = !Number.isNaN(+upDownBp)\n return (\n {\n handleClose()\n }}\n title=\"Feature sequence settings\"\n >\n \n {\n setIntronBp(event.target.value)\n }}\n />\n {\n setUpDownBp(event.target.value)\n }}\n />\n \n Sequence capitalization\n {\n model.setUpperCaseCDS(e.target.value === 'cds')\n }}\n >\n }\n label=\"Capitalize CDS and lower case everything else\"\n />\n }\n label=\"Capitalization from reference genome sequence\"\n />\n \n \n \n\n \n {\n model.setIntronBp(+intronBp)\n model.setUpDownBp(+upDownBp)\n handleClose()\n }}\n disabled={!intronBpValid || !upDownBpValid}\n color=\"primary\"\n variant=\"contained\"\n >\n Submit\n \n {\n handleClose()\n }}\n color=\"secondary\"\n autoFocus\n variant=\"contained\"\n >\n Cancel\n \n \n \n )\n})\n\nexport default SequenceFeatureSettingsDialog\n","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm0 18c-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8-3.58 8-8 8z\"\n}), 'RadioButtonUnchecked');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M8.465 8.465C9.37 7.56 10.62 7 12 7C14.76 7 17 9.24 17 12C17 13.38 16.44 14.63 15.535 15.535C14.63 16.44 13.38 17 12 17C9.24 17 7 14.76 7 12C7 10.62 7.56 9.37 8.465 8.465Z\"\n}), 'RadioButtonChecked');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport RadioButtonUncheckedIcon from \"../internal/svg-icons/RadioButtonUnchecked.js\";\nimport RadioButtonCheckedIcon from \"../internal/svg-icons/RadioButtonChecked.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst RadioButtonIconRoot = styled('span', {\n shouldForwardProp: rootShouldForwardProp\n})({\n position: 'relative',\n display: 'flex'\n});\nconst RadioButtonIconBackground = styled(RadioButtonUncheckedIcon)({\n // Scale applied to prevent dot misalignment in Safari\n transform: 'scale(1)'\n});\nconst RadioButtonIconDot = styled(RadioButtonCheckedIcon)(memoTheme(({\n theme\n}) => ({\n left: 0,\n position: 'absolute',\n transform: 'scale(0)',\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeIn,\n duration: theme.transitions.duration.shortest\n }),\n variants: [{\n props: {\n checked: true\n },\n style: {\n transform: 'scale(1)',\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeOut,\n duration: theme.transitions.duration.shortest\n })\n }\n }]\n})));\n\n/**\n * @ignore - internal component.\n */\nfunction RadioButtonIcon(props) {\n const {\n checked = false,\n classes = {},\n fontSize\n } = props;\n const ownerState = {\n ...props,\n checked\n };\n return /*#__PURE__*/_jsxs(RadioButtonIconRoot, {\n className: classes.root,\n ownerState: ownerState,\n children: [/*#__PURE__*/_jsx(RadioButtonIconBackground, {\n fontSize: fontSize,\n className: classes.background,\n ownerState: ownerState\n }), /*#__PURE__*/_jsx(RadioButtonIconDot, {\n fontSize: fontSize,\n className: classes.dot,\n ownerState: ownerState\n })]\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? RadioButtonIcon.propTypes /* remove-proptypes */ = {\n /**\n * If `true`, the component is checked.\n */\n checked: PropTypes.bool,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * The size of the component.\n * `small` is equivalent to the dense radio styling.\n */\n fontSize: PropTypes.oneOf(['small', 'medium'])\n} : void 0;\nexport default RadioButtonIcon;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport refType from '@mui/utils/refType';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { alpha } from '@mui/system/colorManipulator';\nimport SwitchBase from \"../internal/SwitchBase.js\";\nimport RadioButtonIcon from \"./RadioButtonIcon.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createChainedFunction from \"../utils/createChainedFunction.js\";\nimport useFormControl from \"../FormControl/useFormControl.js\";\nimport useRadioGroup from \"../RadioGroup/useRadioGroup.js\";\nimport radioClasses, { getRadioUtilityClass } from \"./radioClasses.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n color,\n size\n } = ownerState;\n const slots = {\n root: ['root', `color${capitalize(color)}`, size !== 'medium' && `size${capitalize(size)}`]\n };\n return {\n ...classes,\n ...composeClasses(slots, getRadioUtilityClass, classes)\n };\n};\nconst RadioRoot = styled(SwitchBase, {\n shouldForwardProp: prop => rootShouldForwardProp(prop) || prop === 'classes',\n name: 'MuiRadio',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, ownerState.size !== 'medium' && styles[`size${capitalize(ownerState.size)}`], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n color: (theme.vars || theme).palette.text.secondary,\n [`&.${radioClasses.disabled}`]: {\n color: (theme.vars || theme).palette.action.disabled\n },\n variants: [{\n props: {\n color: 'default',\n disabled: false,\n disableRipple: false\n },\n style: {\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette.action.activeChannel} / ${theme.vars.palette.action.hoverOpacity})` : alpha(theme.palette.action.active, theme.palette.action.hoverOpacity)\n }\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color,\n disabled: false,\n disableRipple: false\n },\n style: {\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / ${theme.vars.palette.action.hoverOpacity})` : alpha(theme.palette[color].main, theme.palette.action.hoverOpacity)\n }\n }\n })), ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color,\n disabled: false\n },\n style: {\n [`&.${radioClasses.checked}`]: {\n color: (theme.vars || theme).palette[color].main\n }\n }\n })), {\n // Should be last to override other colors\n props: {\n disableRipple: false\n },\n style: {\n // Reset on touch devices, it doesn't add specificity\n '&:hover': {\n '@media (hover: none)': {\n backgroundColor: 'transparent'\n }\n }\n }\n }]\n})));\nfunction areEqualValues(a, b) {\n if (typeof b === 'object' && b !== null) {\n return a === b;\n }\n\n // The value could be a number, the DOM will stringify it anyway.\n return String(a) === String(b);\n}\nconst defaultCheckedIcon = /*#__PURE__*/_jsx(RadioButtonIcon, {\n checked: true\n});\nconst defaultIcon = /*#__PURE__*/_jsx(RadioButtonIcon, {});\nconst Radio = /*#__PURE__*/React.forwardRef(function Radio(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiRadio'\n });\n const {\n checked: checkedProp,\n checkedIcon = defaultCheckedIcon,\n color = 'primary',\n icon = defaultIcon,\n name: nameProp,\n onChange: onChangeProp,\n size = 'medium',\n className,\n disabled: disabledProp,\n disableRipple = false,\n ...other\n } = props;\n const muiFormControl = useFormControl();\n let disabled = disabledProp;\n if (muiFormControl) {\n if (typeof disabled === 'undefined') {\n disabled = muiFormControl.disabled;\n }\n }\n disabled ??= false;\n const ownerState = {\n ...props,\n disabled,\n disableRipple,\n color,\n size\n };\n const classes = useUtilityClasses(ownerState);\n const radioGroup = useRadioGroup();\n let checked = checkedProp;\n const onChange = createChainedFunction(onChangeProp, radioGroup && radioGroup.onChange);\n let name = nameProp;\n if (radioGroup) {\n if (typeof checked === 'undefined') {\n checked = areEqualValues(radioGroup.value, props.value);\n }\n if (typeof name === 'undefined') {\n name = radioGroup.name;\n }\n }\n return /*#__PURE__*/_jsx(RadioRoot, {\n type: \"radio\",\n icon: /*#__PURE__*/React.cloneElement(icon, {\n fontSize: defaultIcon.props.fontSize ?? size\n }),\n checkedIcon: /*#__PURE__*/React.cloneElement(checkedIcon, {\n fontSize: defaultCheckedIcon.props.fontSize ?? size\n }),\n disabled: disabled,\n ownerState: ownerState,\n classes: classes,\n name: name,\n checked: checked,\n onChange: onChange,\n ref: ref,\n className: clsx(classes.root, className),\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Radio.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * If `true`, the component is checked.\n */\n checked: PropTypes.bool,\n /**\n * The icon to display when the component is checked.\n * @default \n */\n checkedIcon: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the component is disabled.\n */\n disabled: PropTypes.bool,\n /**\n * If `true`, the ripple effect is disabled.\n * @default false\n */\n disableRipple: PropTypes.bool,\n /**\n * The icon to display when the component is unchecked.\n * @default \n */\n icon: PropTypes.node,\n /**\n * The id of the `input` element.\n */\n id: PropTypes.string,\n /**\n * [Attributes](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/input#Attributes) applied to the `input` element.\n */\n inputProps: PropTypes.object,\n /**\n * Pass a ref to the `input` element.\n */\n inputRef: refType,\n /**\n * Name attribute of the `input` element.\n */\n name: PropTypes.string,\n /**\n * Callback fired when the state is changed.\n *\n * @param {React.ChangeEvent} event The event source of the callback.\n * You can pull out the new value by accessing `event.target.value` (string).\n * You can pull out the new checked state by accessing `event.target.checked` (boolean).\n */\n onChange: PropTypes.func,\n /**\n * If `true`, the `input` element is required.\n * @default false\n */\n required: PropTypes.bool,\n /**\n * The size of the component.\n * `small` is equivalent to the dense radio styling.\n * @default 'medium'\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['medium', 'small']), PropTypes.string]),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The value of the component. The DOM API casts this to a string.\n */\n value: PropTypes.any\n} : void 0;\nexport default Radio;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getRadioUtilityClass(slot) {\n return generateUtilityClass('MuiRadio', slot);\n}\nconst radioClasses = generateUtilityClasses('MuiRadio', ['root', 'checked', 'disabled', 'colorPrimary', 'colorSecondary', 'sizeSmall']);\nexport default radioClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport FormGroup from \"../FormGroup/index.js\";\nimport { getRadioGroupUtilityClass } from \"./radioGroupClasses.js\";\nimport useForkRef from \"../utils/useForkRef.js\";\nimport useControlled from \"../utils/useControlled.js\";\nimport RadioGroupContext from \"./RadioGroupContext.js\";\nimport useId from \"../utils/useId.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = props => {\n const {\n classes,\n row,\n error\n } = props;\n const slots = {\n root: ['root', row && 'row', error && 'error']\n };\n return composeClasses(slots, getRadioGroupUtilityClass, classes);\n};\nconst RadioGroup = /*#__PURE__*/React.forwardRef(function RadioGroup(props, ref) {\n const {\n // private\n // eslint-disable-next-line react/prop-types\n actions,\n children,\n className,\n defaultValue,\n name: nameProp,\n onChange,\n value: valueProp,\n ...other\n } = props;\n const rootRef = React.useRef(null);\n const classes = useUtilityClasses(props);\n const [value, setValueState] = useControlled({\n controlled: valueProp,\n default: defaultValue,\n name: 'RadioGroup'\n });\n React.useImperativeHandle(actions, () => ({\n focus: () => {\n let input = rootRef.current.querySelector('input:not(:disabled):checked');\n if (!input) {\n input = rootRef.current.querySelector('input:not(:disabled)');\n }\n if (input) {\n input.focus();\n }\n }\n }), []);\n const handleRef = useForkRef(ref, rootRef);\n const name = useId(nameProp);\n const contextValue = React.useMemo(() => ({\n name,\n onChange(event) {\n setValueState(event.target.value);\n if (onChange) {\n onChange(event, event.target.value);\n }\n },\n value\n }), [name, onChange, setValueState, value]);\n return /*#__PURE__*/_jsx(RadioGroupContext.Provider, {\n value: contextValue,\n children: /*#__PURE__*/_jsx(FormGroup, {\n role: \"radiogroup\",\n ref: handleRef,\n className: clsx(classes.root, className),\n ...other,\n children: children\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? RadioGroup.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The default value. Use when the component is not controlled.\n */\n defaultValue: PropTypes.any,\n /**\n * The name used to reference the value of the control.\n * If you don't provide this prop, it falls back to a randomly generated name.\n */\n name: PropTypes.string,\n /**\n * Callback fired when a radio button is selected.\n *\n * @param {React.ChangeEvent} event The event source of the callback.\n * @param {string} value The value of the selected radio button.\n * You can pull out the new value by accessing `event.target.value` (string).\n */\n onChange: PropTypes.func,\n /**\n * Value of the selected radio button. The DOM API casts this to a string.\n */\n value: PropTypes.any\n} : void 0;\nexport default RadioGroup;","import * as React from 'react';\n/**\n * @ignore - internal component.\n */\nconst RadioGroupContext = /*#__PURE__*/React.createContext(undefined);\nif (process.env.NODE_ENV !== 'production') {\n RadioGroupContext.displayName = 'RadioGroupContext';\n}\nexport default RadioGroupContext;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getRadioGroupUtilityClass(slot) {\n return generateUtilityClass('MuiRadioGroup', slot);\n}\nconst radioGroupClasses = generateUtilityClasses('MuiRadioGroup', ['root', 'row', 'error']);\nexport default radioGroupClasses;","'use client';\n\nimport * as React from 'react';\nimport RadioGroupContext from \"./RadioGroupContext.js\";\nexport default function useRadioGroup() {\n return 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React, { useState } from 'react'\nimport { observer } from 'mobx-react'\n\nimport {\n Button,\n FormHelperText,\n IconButton,\n InputAdornment,\n InputLabel,\n List,\n ListItem,\n TextField,\n} from '@mui/material'\n\n// icons\nimport DeleteIcon from '@mui/icons-material/Delete'\n\nconst StringArrayEditor = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n value: string[]\n setAtIndex: (arg: number, arg2: string) => void\n removeAtIndex: (arg: number) => void\n add: (arg: string) => void\n description: string\n }\n}) {\n const [value, setValue] = useState('')\n const [addNew, setAddNew] = useState(false)\n return (\n <>\n {slot.name ? {slot.name} : null}\n \n {slot.value.map((val, idx) => (\n \n {\n slot.setAtIndex(idx, evt.target.value)\n }}\n InputProps={{\n endAdornment: (\n \n {\n slot.removeAtIndex(idx)\n }}\n >\n \n \n \n ),\n }}\n />\n \n ))}\n\n {addNew ? (\n \n {\n setValue(event.target.value)\n }}\n InputProps={{\n endAdornment: (\n \n <>\n {\n setAddNew(false)\n slot.add(value)\n setValue('')\n }}\n >\n OK\n \n {\n setAddNew(false)\n setValue('')\n }}\n >\n Cancel\n \n \n \n ),\n }}\n />\n \n ) : null}\n {\n setAddNew(true)\n }}\n >\n Add item\n \n \n {slot.description}\n \n )\n})\n\nexport default StringArrayEditor\n","import React, { useEffect, useState } from 'react'\nimport { Tooltip, IconButton, TextField } from '@mui/material'\nimport { useDebounce } from '@jbrowse/core/util'\nimport { stringToJexlExpression } from '@jbrowse/core/util/jexlStrings'\nimport { getEnv } from 'mobx-state-tree'\nimport { observer } from 'mobx-react'\nimport { makeStyles } from 'tss-react/mui'\n\n// icons\nimport HelpIcon from '@mui/icons-material/Help'\n\n// Optimize by using system default fonts:\n// https://css-tricks.com/snippets/css/font-stacks/\nconst fontFamily =\n 'Consolas, \"Andale Mono WT\", \"Andale Mono\", \"Lucida Console\", \"Lucida Sans Typewriter\", \"DejaVu Sans Mono\", \"Bitstream Vera Sans Mono\", \"Liberation Mono\", \"Nimbus Mono L\", Monaco, \"Courier New\", Courier, monospace'\n\nconst useStyles = makeStyles()(theme => ({\n callbackEditor: {\n marginTop: '16px',\n borderBottom: `1px solid ${theme.palette.divider}`,\n width: '100%',\n fontFamily,\n },\n textAreaFont: {\n fontFamily,\n },\n callbackContainer: {\n width: '100%',\n overflowX: 'auto',\n },\n\n error: {\n color: 'red',\n fontSize: '0.8em',\n },\n}))\n\nconst CallbackEditor = observer(function ({\n slot,\n}: {\n slot: {\n set: (arg: string) => void\n description: string\n name: string\n value: string\n contextVariable: string\n }\n}) {\n const { classes } = useStyles()\n\n const [code, setCode] = useState(slot.value)\n const [error, setCodeError] = useState()\n const debouncedCode = useDebounce(code, 400)\n\n useEffect(() => {\n try {\n const jexlDebouncedCode = debouncedCode.startsWith('jexl:')\n ? debouncedCode\n : `jexl:${debouncedCode}`\n\n if (jexlDebouncedCode === 'jexl:') {\n throw new Error('Empty jexl expression is not valid')\n }\n stringToJexlExpression(\n jexlDebouncedCode,\n getEnv(slot).pluginManager?.jexl,\n )\n slot.set(jexlDebouncedCode)\n setCodeError(undefined)\n } catch (e) {\n console.error({ e })\n setCodeError(e)\n }\n }, [debouncedCode, slot])\n\n // if default value is a callback, will have to remove jexl:\n // do this last\n return (\n <>\n {error ?

{`${error}`}

: null}\n

\n {\n setCode(event.target.value)\n }}\n style={{ background: error ? '#fdd' : undefined }}\n InputProps={{\n classes: {\n input: classes.textAreaFont,\n },\n }}\n />\n\n

{slot.description}

\n \n Callbacks are written in Jexl format. Click to learn more.\n
Names of available context items: {slot.contextVariable}\n

\n }\n arrow\n >\n {\n const newWindow = window.open(\n 'https://github.com/TomFrost/Jexl',\n '_blank',\n 'noopener,noreferrer',\n )\n if (newWindow) {\n newWindow.opener = null\n }\n }}\n >\n \n \n \n

\n \n )\n})\n\nexport default CallbackEditor\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { TextField } from '@mui/material'\nimport ColorPicker from '@jbrowse/core/ui/ColorPicker'\n\nexport const ColorSlot = (props: {\n value: string\n label?: string\n TextFieldProps?: {\n helperText: string\n fullWidth: boolean\n }\n onChange: (arg: string) => void\n}) => {\n const { value = '#000', label = '', TextFieldProps = {}, onChange } = props\n const [displayed, setDisplayed] = useState(false)\n\n return (\n

\n {\n setDisplayed(!displayed)\n }}\n onChange={event => {\n onChange(event.target.value)\n }}\n {...TextFieldProps}\n />\n

\n \n {\n onChange(event)\n }}\n />\n \n

\n )\n}\n\nconst ColorEditor = observer(function (props: {\n slot: {\n name: string\n value: string\n description: string\n set: (arg: string) => void\n }\n}) {\n const { slot } = props\n return (\n {\n slot.set(color)\n }}\n TextFieldProps={{\n helperText: slot.description,\n fullWidth: true,\n }}\n />\n )\n})\n\nexport default ColorEditor\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\n\nimport {\n Card,\n CardContent,\n CardHeader,\n FormHelperText,\n IconButton,\n InputAdornment,\n InputLabel,\n TextField,\n} from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n\n// icons\nimport DeleteIcon from '@mui/icons-material/Delete'\nimport AddIcon from '@mui/icons-material/Add'\n\n// locals\nimport StringArrayEditor from './StringArrayEditor'\n\nconst useStyles = makeStyles()(theme => ({\n card: {\n marginTop: theme.spacing(1),\n },\n}))\n\nconst StringArrayMapEditor = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n value: Map\n remove: (key: string) => void\n add: (key: string, val: string[]) => void\n description: string\n setAtKeyIndex: (key: string, idx: number, val: string) => void\n removeAtKeyIndex: (key: string, idx: number) => void\n addToKey: (key: string, val: string) => void\n }\n}) {\n const { classes } = useStyles()\n const [value, setValue] = useState('')\n return (\n <>\n {slot.name}\n {[...slot.value].map(([key, val]) => (\n \n {\n slot.remove(key)\n }}\n >\n \n \n }\n />\n \n {\n slot.setAtKeyIndex(key, idx, val)\n },\n removeAtIndex: (idx: number) => {\n slot.removeAtKeyIndex(key, idx)\n },\n add: (val: string) => {\n slot.addToKey(key, val)\n },\n }}\n />\n \n \n ))}\n \n {\n setValue(event.target.value)\n }}\n InputProps={{\n endAdornment: (\n \n {\n slot.add(value, [])\n setValue('')\n }}\n >\n \n \n \n ),\n }}\n />\n }\n />\n \n {slot.description}\n \n )\n})\n\nexport default StringArrayMapEditor\n","import React from 'react'\nimport { TextField, TextFieldProps } from '@mui/material'\nimport { SanitizedHTML } from '@jbrowse/core/ui'\n\n// adds ability to have html in helperText. note that FormHelperTextProps is\n// div because the default is p which does not like div children\nexport default function ConfigurationTextField(\n props: { helperText?: string } & TextFieldProps,\n) {\n const { helperText } = props\n return (\n }\n FormHelperTextProps={{\n component: 'div',\n }}\n fullWidth\n />\n )\n}\n","import React, { useEffect, useState } from 'react'\nimport { observer } from 'mobx-react'\nimport ConfigurationTextField from './ConfigurationTextField'\n\nconst NumberEditor = observer(function ({\n slot,\n}: {\n slot: {\n name?: string\n value: string\n description?: string\n set: (val: number) => void\n reset?: () => void\n }\n}) {\n const [val, setVal] = useState(slot.value)\n useEffect(() => {\n const num = Number.parseFloat(val)\n if (Number.isNaN(num)) {\n slot.reset?.()\n } else {\n slot.set(num)\n }\n }, [slot, val])\n return (\n {\n setVal(evt.target.value)\n }}\n />\n )\n})\n\nexport default NumberEditor\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\n\nimport {\n Card,\n CardContent,\n CardHeader,\n FormHelperText,\n IconButton,\n InputAdornment,\n InputLabel,\n TextField,\n} from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n\n// icons\nimport DeleteIcon from '@mui/icons-material/Delete'\nimport AddIcon from '@mui/icons-material/Add'\nimport NumberEditor from './NumberEditor'\n\nconst useStyles = makeStyles()(theme => ({\n card: {\n marginTop: theme.spacing(1),\n },\n}))\n\nconst NumberMapEditor = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n value: Map\n remove: (key: string) => void\n add: (key: string, val: number) => void\n description: string\n }\n}) {\n const { classes } = useStyles()\n const [value, setValue] = useState('')\n return (\n <>\n {slot.name}\n {[...slot.value].map(([key, val]) => (\n \n {\n slot.remove(key)\n }}\n >\n \n \n }\n />\n \n {\n slot.add(key, val)\n },\n }}\n />\n \n \n ))}\n \n {\n setValue(event.target.value)\n }}\n InputProps={{\n endAdornment: (\n \n {\n slot.add(value, 0)\n setValue('')\n }}\n >\n \n \n \n ),\n }}\n />\n }\n />\n \n {slot.description}\n \n )\n})\n\nexport default NumberMapEditor\n","import React from 'react'\nimport { observer } from 'mobx-react'\n\nimport {\n Checkbox,\n FormControl,\n FormControlLabel,\n FormHelperText,\n} from '@mui/material'\n\nconst BooleanEditor = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n value: boolean\n set: (arg: boolean) => void\n description: string\n }\n}) {\n return (\n \n {\n slot.set(evt.target.checked)\n }}\n />\n }\n />\n {slot.description}\n \n )\n})\n\nexport default BooleanEditor\n","import { makeStyles } from 'tss-react/mui'\n\nexport const useSlotEditorStyles = makeStyles()(theme => ({\n paper: {\n display: 'flex',\n marginBottom: theme.spacing(2),\n position: 'relative',\n },\n paperContent: {\n width: '100%',\n },\n slotModeSwitch: {\n width: 24,\n background: theme.palette.secondary.light,\n display: 'flex',\n justifyContent: 'center',\n alignItems: 'center',\n },\n}))\n","import React, { useEffect, useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { getPropertyMembers, IAnyType } from 'mobx-state-tree'\nimport { getEnv, FileLocation } from '@jbrowse/core/util'\nimport { FileSelector } from '@jbrowse/core/ui'\nimport {\n getSubType,\n getUnionSubTypes,\n ILiteralType,\n} from '@jbrowse/core/util/mst-reflection'\nimport { IconButton, MenuItem, Paper, SvgIcon, TextField } from '@mui/material'\n\n// icons\nimport RadioButtonUncheckedIcon from '@mui/icons-material/RadioButtonUnchecked'\n\n// locals\nimport StringArrayEditor from './StringArrayEditor'\nimport CallbackEditor from './CallbackEditor'\nimport ColorEditor from './ColorEditor'\nimport JsonEditor from './JsonEditor'\nimport StringArrayMapEditor from './StringArrayMapEditor'\nimport ConfigurationTextField from './ConfigurationTextField'\nimport NumberMapEditor from './NumberMapEditor'\nimport NumberEditor from './NumberEditor'\nimport BooleanEditor from './BooleanEditor'\nimport {\n AnyConfigurationSlot,\n AnyConfigurationSlotType,\n} from '@jbrowse/core/configuration'\nimport { useSlotEditorStyles } from './useSlotEditorStyles'\n\nconst StringEditor = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n description: string\n value: string\n set: (arg: string) => void\n }\n}) {\n return (\n {\n slot.set(evt.target.value)\n }}\n />\n )\n})\n\nconst TextEditor = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n description: string\n value: string\n set: (arg: string) => void\n }\n}) {\n return (\n {\n slot.set(evt.target.value)\n }}\n />\n )\n})\n\n// checked checkbox, looks like a styled (x)\nconst SvgCheckbox = () => (\n \n \n \n)\n\nconst IntegerEditor = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n value: string\n description: string\n set: (num: number) => void\n }\n}) {\n const [val, setVal] = useState(slot.value)\n useEffect(() => {\n const num = Number.parseInt(val, 10)\n if (!Number.isNaN(num)) {\n slot.set(num)\n }\n }, [slot, val])\n return (\n {\n setVal(evt.target.value)\n }}\n />\n )\n})\n\nconst StringEnumEditor = observer(function ({\n slot,\n slotSchema,\n}: {\n slot: AnyConfigurationSlot\n slotSchema: AnyConfigurationSlotType\n}) {\n const p = getPropertyMembers(getSubType(slotSchema))\n const choices = getUnionSubTypes(\n getUnionSubTypes(getSubType(p.properties.value!))[1]!,\n ).map(t => (t as ILiteralType).value)\n\n return (\n {\n slot.set(evt.target.value)\n }}\n >\n {choices.map(str => (\n \n {str}\n \n ))}\n \n )\n})\n\nconst FileSelectorWrapper = observer(function ({\n slot,\n}: {\n slot: {\n name: string\n value: FileLocation\n set: (arg: FileLocation) => void\n description: string\n }\n}) {\n return (\n {\n slot.set(location)\n }}\n name={slot.name}\n description={slot.description}\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n rootModel={getEnv(slot).pluginManager?.rootModel}\n />\n )\n})\n\nconst valueComponents = {\n string: StringEditor,\n text: TextEditor,\n fileLocation: FileSelectorWrapper,\n stringArray: StringArrayEditor,\n stringArrayMap: StringArrayMapEditor,\n numberMap: NumberMapEditor,\n number: NumberEditor,\n integer: IntegerEditor,\n color: ColorEditor,\n stringEnum: StringEnumEditor,\n boolean: BooleanEditor,\n frozen: JsonEditor,\n configRelationships: JsonEditor,\n}\n\nconst SlotEditor = observer(function ({\n slot,\n slotSchema,\n}: {\n slot: any\n slotSchema: IAnyType\n}) {\n const { classes } = useSlotEditorStyles()\n const { type } = slot\n let ValueComponent = slot.isCallback\n ? CallbackEditor\n : // @ts-expect-error\n valueComponents[type]\n if (!ValueComponent) {\n console.warn(`no slot editor defined for ${type}, editing as string`)\n ValueComponent = StringEditor\n }\n if (!(type in valueComponents)) {\n console.warn(`SlotEditor needs to implement ${type}`)\n }\n return (\n \n

\n \n

\n {slot.contextVariable.length ? (\n \n slot.isCallback ? slot.convertToValue() : slot.convertToCallback()\n }\n title={`convert to ${\n slot.isCallback ? 'regular value' : 'callback'\n }`}\n >\n {slot.isCallback ? : }\n \n ) : null}\n

\n \n )\n})\n\nexport default SlotEditor\n","import React from 'react'\nimport { MenuItem, Paper, TextField } from '@mui/material'\nimport { observer } from 'mobx-react'\nimport { AnyConfigurationModel } from '@jbrowse/core/configuration'\nimport { useSlotEditorStyles } from './useSlotEditorStyles'\n\nconst TypeSelector = observer(function ({\n typeNameChoices,\n slot,\n slotName,\n onChange,\n}: {\n typeNameChoices: string[]\n slot: AnyConfigurationModel\n slotName: string\n onChange: (event: React.ChangeEvent) => void\n}) {\n const { classes } = useSlotEditorStyles()\n return (\n \n

\n \n {typeNameChoices.map(str => (\n \n {str}\n \n ))}\n \n

\n \n )\n})\n\nexport default TypeSelector\n","import React from 'react'\n\nimport {\n FormGroup,\n Accordion,\n AccordionDetails,\n AccordionSummary,\n Typography,\n} from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { getMembers, IAnyType } from 'mobx-state-tree'\nimport { singular } from 'pluralize'\n\n// jbrowse\nimport { AbstractSessionModel } from '@jbrowse/core/util'\nimport SanitizedHTML from '@jbrowse/core/ui/SanitizedHTML'\nimport {\n readConfObject,\n getTypeNamesFromExplicitlyTypedUnion,\n isConfigurationSchemaType,\n isConfigurationSlotType,\n AnyConfigurationModel,\n} from '@jbrowse/core/configuration'\n\n// icons\nimport ExpandMoreIcon from '@mui/icons-material/ExpandMore'\n\n// locals\nimport SlotEditor from './SlotEditor'\nimport TypeSelector from './TypeSelector'\n\nconst useStyles = makeStyles()(theme => ({\n icon: {\n color: theme.palette.tertiary.contrastText || '#fff',\n },\n expansionPanelDetails: {\n display: 'block',\n padding: theme.spacing(1),\n },\n accordion: {\n border: `1px solid ${theme.palette.text.primary}`,\n },\n noOverflow: {\n width: '100%',\n overflowX: 'auto',\n },\n}))\n\nconst Member = observer(function (props: {\n slotName: string\n slotSchema: IAnyType\n schema: AnyConfigurationModel\n slot?: AnyConfigurationModel | AnyConfigurationModel[]\n path?: string[]\n}) {\n const { classes } = useStyles()\n const {\n slotName,\n slotSchema,\n schema,\n slot = schema[slotName],\n path = [],\n } = props\n if (isConfigurationSchemaType(slotSchema)) {\n if (slot.length) {\n return slot.map((subslot: AnyConfigurationModel, slotIndex: number) => {\n const key = subslot.type\n ? `${singular(slotName)} ${subslot.type}`\n : `${singular(slotName)} ${slotIndex + 1}`\n return \n })\n }\n // if this is an explicitly typed schema, make a type-selecting dropdown\n // that can be used to change its type\n const typeNameChoices = getTypeNamesFromExplicitlyTypedUnion(slotSchema)\n return (\n \n }\n >\n {[...path, slotName].join('➔')}\n \n \n {typeNameChoices.length ? (\n {\n if (evt.target.value !== slot.type) {\n schema.setSubschema(slotName, { type: evt.target.value })\n }\n }}\n />\n ) : null}\n \n \n \n \n \n )\n } else if (isConfigurationSlotType(slotSchema)) {\n return \n } else {\n return null\n }\n})\n\nconst Schema = observer(function ({\n schema,\n path = [],\n}: {\n schema: AnyConfigurationModel\n path?: string[]\n}) {\n const properties = getMembers(schema).properties\n return (\n <>\n {Object.entries(properties).map(([slotName, slotSchema]) => (\n \n ))}\n \n )\n})\n\nconst ConfigurationEditor = observer(function ({\n model,\n}: {\n model: { target: AnyConfigurationModel }\n session?: AbstractSessionModel\n}) {\n const { classes } = useStyles()\n // key forces a re-render, otherwise the same field can end up being used for\n // different tracks since only the backing model changes for example see pr\n // #804\n const { target } = model\n const key = readConfObject(target, 'trackId')\n const name = readConfObject(target, 'name')\n return (\n \n }\n >\n \n \n \n \n \n \n \n \n )\n})\n\nexport default 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client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M6 10c-1.1 0-2 .9-2 2s.9 2 2 2 2-.9 2-2-.9-2-2-2zm12 0c-1.1 0-2 .9-2 2s.9 2 2 2 2-.9 2-2-.9-2-2-2zm-6 0c-1.1 0-2 .9-2 2s.9 2 2 2 2-.9 2-2-.9-2-2-2z\"\n}), 'MoreHoriz');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { emphasize } from '@mui/system/colorManipulator';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport MoreHorizIcon from \"../internal/svg-icons/MoreHoriz.js\";\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst BreadcrumbCollapsedButton = styled(ButtonBase)(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n marginLeft: `calc(${theme.spacing(1)} * 0.5)`,\n marginRight: `calc(${theme.spacing(1)} * 0.5)`,\n ...(theme.palette.mode === 'light' ? {\n backgroundColor: theme.palette.grey[100],\n color: theme.palette.grey[700]\n } : {\n backgroundColor: theme.palette.grey[700],\n color: theme.palette.grey[100]\n }),\n borderRadius: 2,\n '&:hover, &:focus': {\n ...(theme.palette.mode === 'light' ? {\n backgroundColor: theme.palette.grey[200]\n } : {\n backgroundColor: theme.palette.grey[600]\n })\n },\n '&:active': {\n boxShadow: theme.shadows[0],\n ...(theme.palette.mode === 'light' ? {\n backgroundColor: emphasize(theme.palette.grey[200], 0.12)\n } : {\n backgroundColor: emphasize(theme.palette.grey[600], 0.12)\n })\n }\n})));\nconst BreadcrumbCollapsedIcon = styled(MoreHorizIcon)({\n width: 24,\n height: 16\n});\n\n/**\n * @ignore - internal component.\n */\nfunction BreadcrumbCollapsed(props) {\n const {\n slots = {},\n slotProps = {},\n ...otherProps\n } = props;\n const ownerState = props;\n return /*#__PURE__*/_jsx(\"li\", {\n children: /*#__PURE__*/_jsx(BreadcrumbCollapsedButton, {\n focusRipple: true,\n ...otherProps,\n ownerState: ownerState,\n children: /*#__PURE__*/_jsx(BreadcrumbCollapsedIcon, {\n as: slots.CollapsedIcon,\n ownerState: ownerState,\n ...slotProps.collapsedIcon\n })\n })\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? BreadcrumbCollapsed.propTypes = {\n /**\n * The props used for the CollapsedIcon slot.\n * @default {}\n */\n slotProps: PropTypes.shape({\n collapsedIcon: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside the BreadcumbCollapsed.\n * Either a string to use a HTML element or a component.\n * @default {}\n */\n slots: PropTypes.shape({\n CollapsedIcon: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.object\n} : void 0;\nexport default BreadcrumbCollapsed;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getBreadcrumbsUtilityClass(slot) {\n return generateUtilityClass('MuiBreadcrumbs', slot);\n}\nconst breadcrumbsClasses = generateUtilityClasses('MuiBreadcrumbs', ['root', 'ol', 'li', 'separator']);\nexport default breadcrumbsClasses;","'use client';\n\nimport * as React from 'react';\nimport { isFragment } from 'react-is';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport integerPropType from '@mui/utils/integerPropType';\nimport composeClasses from '@mui/utils/composeClasses';\nimport useSlotProps from '@mui/utils/useSlotProps';\nimport { styled } from \"../zero-styled/index.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Typography from \"../Typography/index.js\";\nimport BreadcrumbCollapsed from \"./BreadcrumbCollapsed.js\";\nimport breadcrumbsClasses, { getBreadcrumbsUtilityClass } from \"./breadcrumbsClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root'],\n li: ['li'],\n ol: ['ol'],\n separator: ['separator']\n };\n return composeClasses(slots, getBreadcrumbsUtilityClass, classes);\n};\nconst BreadcrumbsRoot = styled(Typography, {\n name: 'MuiBreadcrumbs',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n return [{\n [`& .${breadcrumbsClasses.li}`]: styles.li\n }, styles.root];\n }\n})({});\nconst BreadcrumbsOl = styled('ol', {\n name: 'MuiBreadcrumbs',\n slot: 'Ol',\n overridesResolver: (props, styles) => styles.ol\n})({\n display: 'flex',\n flexWrap: 'wrap',\n alignItems: 'center',\n padding: 0,\n margin: 0,\n listStyle: 'none'\n});\nconst BreadcrumbsSeparator = styled('li', {\n name: 'MuiBreadcrumbs',\n slot: 'Separator',\n overridesResolver: (props, styles) => styles.separator\n})({\n display: 'flex',\n userSelect: 'none',\n marginLeft: 8,\n marginRight: 8\n});\nfunction insertSeparators(items, className, separator, ownerState) {\n return items.reduce((acc, current, index) => {\n if (index < items.length - 1) {\n acc = acc.concat(current, /*#__PURE__*/_jsx(BreadcrumbsSeparator, {\n \"aria-hidden\": true,\n className: className,\n ownerState: ownerState,\n children: separator\n }, `separator-${index}`));\n } else {\n acc.push(current);\n }\n return acc;\n }, []);\n}\nconst Breadcrumbs = /*#__PURE__*/React.forwardRef(function Breadcrumbs(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiBreadcrumbs'\n });\n const {\n children,\n className,\n component = 'nav',\n slots = {},\n slotProps = {},\n expandText = 'Show path',\n itemsAfterCollapse = 1,\n itemsBeforeCollapse = 1,\n maxItems = 8,\n separator = '/',\n ...other\n } = props;\n const [expanded, setExpanded] = React.useState(false);\n const ownerState = {\n ...props,\n component,\n expanded,\n expandText,\n itemsAfterCollapse,\n itemsBeforeCollapse,\n maxItems,\n separator\n };\n const classes = useUtilityClasses(ownerState);\n const collapsedIconSlotProps = useSlotProps({\n elementType: slots.CollapsedIcon,\n externalSlotProps: slotProps.collapsedIcon,\n ownerState\n });\n const listRef = React.useRef(null);\n const renderItemsBeforeAndAfter = allItems => {\n const handleClickExpand = () => {\n setExpanded(true);\n\n // The clicked element received the focus but gets removed from the DOM.\n // Let's keep the focus in the component after expanding.\n // Moving it to the

does not cause any announcement in NVDA.\n // By moving it to some link/button at least we have some announcement.\n const focusable = listRef.current.querySelector('a[href],button,[tabindex]');\n if (focusable) {\n focusable.focus();\n }\n };\n\n // This defends against someone passing weird input, to ensure that if all\n // items would be shown anyway, we just show all items without the EllipsisItem\n if (itemsBeforeCollapse + itemsAfterCollapse >= allItems.length) {\n if (process.env.NODE_ENV !== 'production') {\n console.error(['MUI: You have provided an invalid combination of props to the Breadcrumbs.', `itemsAfterCollapse={${itemsAfterCollapse}} + itemsBeforeCollapse={${itemsBeforeCollapse}} >= maxItems={${maxItems}}`].join('\\n'));\n }\n return allItems;\n }\n return [...allItems.slice(0, itemsBeforeCollapse), /*#__PURE__*/_jsx(BreadcrumbCollapsed, {\n \"aria-label\": expandText,\n slots: {\n CollapsedIcon: slots.CollapsedIcon\n },\n slotProps: {\n collapsedIcon: collapsedIconSlotProps\n },\n onClick: handleClickExpand\n }, \"ellipsis\"), ...allItems.slice(allItems.length - itemsAfterCollapse, allItems.length)];\n };\n const allItems = React.Children.toArray(children).filter(child => {\n if (process.env.NODE_ENV !== 'production') {\n if (isFragment(child)) {\n console.error([\"MUI: The Breadcrumbs component doesn't accept a Fragment as a child.\", 'Consider providing an array instead.'].join('\\n'));\n }\n }\n return /*#__PURE__*/React.isValidElement(child);\n }).map((child, index) => /*#__PURE__*/_jsx(\"li\", {\n className: classes.li,\n children: child\n }, `child-${index}`));\n return /*#__PURE__*/_jsx(BreadcrumbsRoot, {\n ref: ref,\n component: component,\n color: \"textSecondary\",\n className: clsx(classes.root, className),\n ownerState: ownerState,\n ...other,\n children: /*#__PURE__*/_jsx(BreadcrumbsOl, {\n className: classes.ol,\n ref: listRef,\n ownerState: ownerState,\n children: insertSeparators(expanded || maxItems && allItems.length <= maxItems ? allItems : renderItemsBeforeAndAfter(allItems), classes.separator, separator, ownerState)\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Breadcrumbs.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * Override the default label for the expand button.\n *\n * For localization purposes, you can use the provided [translations](https://mui.com/material-ui/guides/localization/).\n * @default 'Show path'\n */\n expandText: PropTypes.string,\n /**\n * If max items is exceeded, the number of items to show after the ellipsis.\n * @default 1\n */\n itemsAfterCollapse: integerPropType,\n /**\n * If max items is exceeded, the number of items to show before the ellipsis.\n * @default 1\n */\n itemsBeforeCollapse: integerPropType,\n /**\n * Specifies the maximum number of breadcrumbs to display. When there are more\n * than the maximum number, only the first `itemsBeforeCollapse` and last `itemsAfterCollapse`\n * will be shown, with an ellipsis in between.\n * @default 8\n */\n maxItems: integerPropType,\n /**\n * Custom separator node.\n * @default '/'\n */\n separator: PropTypes.node,\n /**\n * The props used for each slot inside the Breadcumb.\n * @default {}\n */\n slotProps: PropTypes.shape({\n collapsedIcon: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside the Breadcumb.\n * Either a string to use a HTML element or a component.\n * @default {}\n */\n slots: PropTypes.shape({\n CollapsedIcon: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object])\n} : void 0;\nexport default Breadcrumbs;"],"names":["createSvgIcon","d","BreadcrumbCollapsedButton","styled","ButtonBase","memoTheme","theme","display","marginLeft","spacing","marginRight","palette","mode","backgroundColor","grey","color","borderRadius","boxShadow","shadows","BreadcrumbCollapsedIcon","MoreHoriz","width","height","props","slots","slotProps","otherProps","ownerState","children","focusRipple","as","CollapsedIcon","collapsedIcon","getBreadcrumbsUtilityClass","slot","generateUtilityClass","generateUtilityClasses","BreadcrumbsRoot","Typography","name","overridesResolver","styles","li","root","BreadcrumbsOl","ol","flexWrap","alignItems","padding","margin","listStyle","BreadcrumbsSeparator","separator","userSelect","insertSeparators","items","className","reduce","acc","current","index","length","concat","push","inProps","ref","component","expandText","itemsAfterCollapse","itemsBeforeCollapse","maxItems","other","expanded","setExpanded","classes","composeClasses","useUtilityClasses","collapsedIconSlotProps","useSlotProps","elementType","externalSlotProps","listRef","allItems","toArray","filter","child","map","clsx","slice","onClick","focusable","querySelector","focus","renderItemsBeforeAndAfter"],"sourceRoot":""} 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client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M9 16.17 4.83 12l-1.42 1.41L9 19 21 7l-1.41-1.41z\"\n}), 'Check');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M10 18h4v-2h-4zM3 6v2h18V6zm3 7h12v-2H6z\"\n}), 'FilterList');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M18.99 11.5c.34 0 .67.03 1 .07L20 0 0 20h11.56c-.04-.33-.07-.66-.07-1 0-4.14 3.36-7.5 7.5-7.5m3.71 7.99c.02-.16.04-.32.04-.49s-.01-.33-.04-.49l1.06-.83c.09-.08.12-.21.06-.32l-1-1.73c-.06-.11-.19-.15-.31-.11l-1.24.5c-.26-.2-.54-.37-.85-.49l-.19-1.32c-.01-.12-.12-.21-.24-.21h-2c-.12 0-.23.09-.25.21l-.19 1.32c-.3.13-.59.29-.85.49l-1.24-.5c-.11-.04-.24 0-.31.11l-1 1.73c-.06.11-.04.24.06.32l1.06.83c-.02.16-.03.32-.03.49s.01.33.03.49l-1.06.83c-.09.08-.12.21-.06.32l1 1.73c.06.11.19.15.31.11l1.24-.5c.26.2.54.37.85.49l.19 1.32c.02.12.12.21.25.21h2c.12 0 .23-.09.25-.21l.19-1.32c.3-.13.59-.29.84-.49l1.25.5c.11.04.24 0 .31-.11l1-1.73c.06-.11.03-.24-.06-.32zm-3.71 1.01c-.83 0-1.5-.67-1.5-1.5s.67-1.5 1.5-1.5 1.5.67 1.5 1.5-.67 1.5-1.5 1.5\"\n}), 'PermDataSetting');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm0 18c-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8-3.58 8-8 8z\"\n}), 'RadioButtonUnchecked');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M8.465 8.465C9.37 7.56 10.62 7 12 7C14.76 7 17 9.24 17 12C17 13.38 16.44 14.63 15.535 15.535C14.63 16.44 13.38 17 12 17C9.24 17 7 14.76 7 12C7 10.62 7.56 9.37 8.465 8.465Z\"\n}), 'RadioButtonChecked');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport RadioButtonUncheckedIcon from \"../internal/svg-icons/RadioButtonUnchecked.js\";\nimport RadioButtonCheckedIcon from \"../internal/svg-icons/RadioButtonChecked.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst RadioButtonIconRoot = styled('span', {\n shouldForwardProp: rootShouldForwardProp\n})({\n position: 'relative',\n display: 'flex'\n});\nconst RadioButtonIconBackground = styled(RadioButtonUncheckedIcon)({\n // Scale applied to prevent dot misalignment in Safari\n transform: 'scale(1)'\n});\nconst RadioButtonIconDot = styled(RadioButtonCheckedIcon)(memoTheme(({\n theme\n}) => ({\n left: 0,\n position: 'absolute',\n transform: 'scale(0)',\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeIn,\n duration: theme.transitions.duration.shortest\n }),\n variants: [{\n props: {\n checked: true\n },\n style: {\n transform: 'scale(1)',\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeOut,\n duration: theme.transitions.duration.shortest\n })\n }\n }]\n})));\n\n/**\n * @ignore - internal component.\n */\nfunction RadioButtonIcon(props) {\n const {\n checked = false,\n classes = {},\n fontSize\n } = props;\n const ownerState = {\n ...props,\n checked\n };\n return /*#__PURE__*/_jsxs(RadioButtonIconRoot, {\n className: classes.root,\n ownerState: ownerState,\n children: [/*#__PURE__*/_jsx(RadioButtonIconBackground, {\n fontSize: fontSize,\n className: classes.background,\n ownerState: ownerState\n }), /*#__PURE__*/_jsx(RadioButtonIconDot, {\n fontSize: fontSize,\n className: classes.dot,\n ownerState: ownerState\n })]\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? RadioButtonIcon.propTypes /* remove-proptypes */ = {\n /**\n * If `true`, the component is checked.\n */\n checked: PropTypes.bool,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * The size of the component.\n * `small` is equivalent to the dense radio styling.\n */\n fontSize: PropTypes.oneOf(['small', 'medium'])\n} : void 0;\nexport default RadioButtonIcon;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport refType from '@mui/utils/refType';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { alpha } from '@mui/system/colorManipulator';\nimport SwitchBase from \"../internal/SwitchBase.js\";\nimport RadioButtonIcon from \"./RadioButtonIcon.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createChainedFunction from \"../utils/createChainedFunction.js\";\nimport useFormControl from \"../FormControl/useFormControl.js\";\nimport useRadioGroup from \"../RadioGroup/useRadioGroup.js\";\nimport radioClasses, { getRadioUtilityClass } from \"./radioClasses.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n color,\n size\n } = ownerState;\n const slots = {\n root: ['root', `color${capitalize(color)}`, size !== 'medium' && `size${capitalize(size)}`]\n };\n return {\n ...classes,\n ...composeClasses(slots, getRadioUtilityClass, classes)\n };\n};\nconst RadioRoot = styled(SwitchBase, {\n shouldForwardProp: prop => rootShouldForwardProp(prop) || prop === 'classes',\n name: 'MuiRadio',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, ownerState.size !== 'medium' && styles[`size${capitalize(ownerState.size)}`], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n color: (theme.vars || theme).palette.text.secondary,\n [`&.${radioClasses.disabled}`]: {\n color: (theme.vars || theme).palette.action.disabled\n },\n variants: [{\n props: {\n color: 'default',\n disabled: false,\n disableRipple: false\n },\n style: {\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette.action.activeChannel} / ${theme.vars.palette.action.hoverOpacity})` : alpha(theme.palette.action.active, theme.palette.action.hoverOpacity)\n }\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color,\n disabled: false,\n disableRipple: false\n },\n style: {\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / ${theme.vars.palette.action.hoverOpacity})` : alpha(theme.palette[color].main, theme.palette.action.hoverOpacity)\n }\n }\n })), ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color,\n disabled: false\n },\n style: {\n [`&.${radioClasses.checked}`]: {\n color: (theme.vars || theme).palette[color].main\n }\n }\n })), {\n // Should be last to override other colors\n props: {\n disableRipple: false\n },\n style: {\n // Reset on touch devices, it doesn't add specificity\n '&:hover': {\n '@media (hover: none)': {\n backgroundColor: 'transparent'\n }\n }\n }\n }]\n})));\nfunction areEqualValues(a, b) {\n if (typeof b === 'object' && b !== null) {\n return a === b;\n }\n\n // The value could be a number, the DOM will stringify it anyway.\n return String(a) === String(b);\n}\nconst defaultCheckedIcon = /*#__PURE__*/_jsx(RadioButtonIcon, {\n checked: true\n});\nconst defaultIcon = /*#__PURE__*/_jsx(RadioButtonIcon, {});\nconst Radio = /*#__PURE__*/React.forwardRef(function Radio(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiRadio'\n });\n const {\n checked: checkedProp,\n checkedIcon = defaultCheckedIcon,\n color = 'primary',\n icon = defaultIcon,\n name: nameProp,\n onChange: onChangeProp,\n size = 'medium',\n className,\n disabled: disabledProp,\n disableRipple = false,\n ...other\n } = props;\n const muiFormControl = useFormControl();\n let disabled = disabledProp;\n if (muiFormControl) {\n if (typeof disabled === 'undefined') {\n disabled = muiFormControl.disabled;\n }\n }\n disabled ??= false;\n const ownerState = {\n ...props,\n disabled,\n disableRipple,\n color,\n size\n };\n const classes = useUtilityClasses(ownerState);\n const radioGroup = useRadioGroup();\n let checked = checkedProp;\n const onChange = createChainedFunction(onChangeProp, radioGroup && radioGroup.onChange);\n let name = nameProp;\n if (radioGroup) {\n if (typeof checked === 'undefined') {\n checked = areEqualValues(radioGroup.value, props.value);\n }\n if (typeof name === 'undefined') {\n name = radioGroup.name;\n }\n }\n return /*#__PURE__*/_jsx(RadioRoot, {\n type: \"radio\",\n icon: /*#__PURE__*/React.cloneElement(icon, {\n fontSize: defaultIcon.props.fontSize ?? size\n }),\n checkedIcon: /*#__PURE__*/React.cloneElement(checkedIcon, {\n fontSize: defaultCheckedIcon.props.fontSize ?? size\n }),\n disabled: disabled,\n ownerState: ownerState,\n classes: classes,\n name: name,\n checked: checked,\n onChange: onChange,\n ref: ref,\n className: clsx(classes.root, className),\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Radio.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * If `true`, the component is checked.\n */\n checked: PropTypes.bool,\n /**\n * The icon to display when the component is checked.\n * @default \n */\n checkedIcon: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the component is disabled.\n */\n disabled: PropTypes.bool,\n /**\n * If `true`, the ripple effect is disabled.\n * @default false\n */\n disableRipple: PropTypes.bool,\n /**\n * The icon to display when the component is unchecked.\n * @default \n */\n icon: PropTypes.node,\n /**\n * The id of the `input` element.\n */\n id: PropTypes.string,\n /**\n * [Attributes](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/input#Attributes) applied to the `input` element.\n */\n inputProps: PropTypes.object,\n /**\n * Pass a ref to the `input` element.\n */\n inputRef: refType,\n /**\n * Name attribute of the `input` element.\n */\n name: PropTypes.string,\n /**\n * Callback fired when the state is changed.\n *\n * @param {React.ChangeEvent} event The event source of the callback.\n * You can pull out the new value by accessing `event.target.value` (string).\n * You can pull out the new checked state by accessing `event.target.checked` (boolean).\n */\n onChange: PropTypes.func,\n /**\n * If `true`, the `input` element is required.\n * @default false\n */\n required: PropTypes.bool,\n /**\n * The size of the component.\n * `small` is equivalent to the dense radio styling.\n * @default 'medium'\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['medium', 'small']), PropTypes.string]),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The value of the component. The DOM API casts this to a string.\n */\n value: PropTypes.any\n} : void 0;\nexport default Radio;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getRadioUtilityClass(slot) {\n return generateUtilityClass('MuiRadio', slot);\n}\nconst radioClasses = generateUtilityClasses('MuiRadio', ['root', 'checked', 'disabled', 'colorPrimary', 'colorSecondary', 'sizeSmall']);\nexport default radioClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport FormGroup from \"../FormGroup/index.js\";\nimport { getRadioGroupUtilityClass } from \"./radioGroupClasses.js\";\nimport useForkRef from \"../utils/useForkRef.js\";\nimport useControlled from \"../utils/useControlled.js\";\nimport RadioGroupContext from \"./RadioGroupContext.js\";\nimport useId from \"../utils/useId.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = props => {\n const {\n classes,\n row,\n error\n } = props;\n const slots = {\n root: ['root', row && 'row', error && 'error']\n };\n return composeClasses(slots, getRadioGroupUtilityClass, classes);\n};\nconst RadioGroup = /*#__PURE__*/React.forwardRef(function RadioGroup(props, ref) {\n const {\n // private\n // eslint-disable-next-line react/prop-types\n actions,\n children,\n className,\n defaultValue,\n name: nameProp,\n onChange,\n value: valueProp,\n ...other\n } = props;\n const rootRef = React.useRef(null);\n const classes = useUtilityClasses(props);\n const [value, setValueState] = useControlled({\n controlled: valueProp,\n default: defaultValue,\n name: 'RadioGroup'\n });\n React.useImperativeHandle(actions, () => ({\n focus: () => {\n let input = rootRef.current.querySelector('input:not(:disabled):checked');\n if (!input) {\n input = rootRef.current.querySelector('input:not(:disabled)');\n }\n if (input) {\n input.focus();\n }\n }\n }), []);\n const handleRef = useForkRef(ref, rootRef);\n const name = useId(nameProp);\n const contextValue = React.useMemo(() => ({\n name,\n onChange(event) {\n setValueState(event.target.value);\n if (onChange) {\n onChange(event, event.target.value);\n }\n },\n value\n }), [name, onChange, setValueState, value]);\n return /*#__PURE__*/_jsx(RadioGroupContext.Provider, {\n value: contextValue,\n children: /*#__PURE__*/_jsx(FormGroup, {\n role: \"radiogroup\",\n ref: handleRef,\n className: clsx(classes.root, className),\n ...other,\n children: children\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? RadioGroup.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The default value. Use when the component is not controlled.\n */\n defaultValue: PropTypes.any,\n /**\n * The name used to reference the value of the control.\n * If you don't provide this prop, it falls back to a randomly generated name.\n */\n name: PropTypes.string,\n /**\n * Callback fired when a radio button is selected.\n *\n * @param {React.ChangeEvent} event The event source of the callback.\n * @param {string} value The value of the selected radio button.\n * You can pull out the new value by accessing `event.target.value` (string).\n */\n onChange: PropTypes.func,\n /**\n * Value of the selected radio button. The DOM API casts this to a string.\n */\n value: PropTypes.any\n} : void 0;\nexport default RadioGroup;","import * as React from 'react';\n/**\n * @ignore - internal component.\n */\nconst RadioGroupContext = /*#__PURE__*/React.createContext(undefined);\nif (process.env.NODE_ENV !== 'production') {\n RadioGroupContext.displayName = 'RadioGroupContext';\n}\nexport default RadioGroupContext;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getRadioGroupUtilityClass(slot) {\n return generateUtilityClass('MuiRadioGroup', slot);\n}\nconst radioGroupClasses = generateUtilityClasses('MuiRadioGroup', ['root', 'row', 'error']);\nexport default radioGroupClasses;","'use client';\n\nimport * as React from 'react';\nimport RadioGroupContext from \"./RadioGroupContext.js\";\nexport default function useRadioGroup() {\n return React.useContext(RadioGroupContext);\n}","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getToolbarUtilityClass } from \"./toolbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n disableGutters,\n variant\n } = ownerState;\n const slots = {\n root: ['root', !disableGutters && 'gutters', variant]\n };\n return composeClasses(slots, getToolbarUtilityClass, classes);\n};\nconst ToolbarRoot = styled('div', {\n name: 'MuiToolbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, !ownerState.disableGutters && styles.gutters, styles[ownerState.variant]];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disableGutters,\n style: {\n paddingLeft: theme.spacing(2),\n paddingRight: theme.spacing(2),\n [theme.breakpoints.up('sm')]: {\n paddingLeft: theme.spacing(3),\n paddingRight: theme.spacing(3)\n }\n }\n }, {\n props: {\n variant: 'dense'\n },\n style: {\n minHeight: 48\n }\n }, {\n props: {\n variant: 'regular'\n },\n style: theme.mixins.toolbar\n }]\n})));\nconst Toolbar = /*#__PURE__*/React.forwardRef(function Toolbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiToolbar'\n });\n const {\n className,\n component = 'div',\n disableGutters = false,\n variant = 'regular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableGutters,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ToolbarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Toolbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.\n * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, disables gutter padding.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'regular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dense', 'regular']), PropTypes.string])\n} : void 0;\nexport default Toolbar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getToolbarUtilityClass(slot) {\n return generateUtilityClass('MuiToolbar', slot);\n}\nconst toolbarClasses = generateUtilityClasses('MuiToolbar', ['root', 'gutters', 'regular', 'dense']);\nexport default toolbarClasses;","const indigo = {\n 50: '#e8eaf6',\n 100: '#c5cae9',\n 200: '#9fa8da',\n 300: '#7986cb',\n 400: '#5c6bc0',\n 500: '#3f51b5',\n 600: '#3949ab',\n 700: '#303f9f',\n 800: '#283593',\n 900: '#1a237e',\n A100: '#8c9eff',\n A200: '#536dfe',\n A400: '#3d5afe',\n A700: '#304ffe'\n};\nexport default indigo;"],"names":["d","createSvgIcon","RadioButtonIconRoot","styled","shouldForwardProp","rootShouldForwardProp","position","display","RadioButtonIconBackground","RadioButtonUnchecked","transform","RadioButtonIconDot","RadioButtonChecked","memoTheme","theme","left","transition","transitions","create","easing","easeIn","duration","shortest","variants","props","checked","style","easeOut","classes","fontSize","ownerState","className","root","children","background","dot","RadioRoot","SwitchBase","prop","name","slot","overridesResolver","styles","size","capitalize","color","vars","palette","text","secondary","radioClasses","disabled","action","disableRipple","backgroundColor","activeChannel","hoverOpacity","active","Object","entries","filter","createSimplePaletteValueFilter","map","mainChannel","main","defaultCheckedIcon","defaultIcon","inProps","ref","checkedProp","checkedIcon","icon","nameProp","onChange","onChangeProp","disabledProp","other","muiFormControl","useFormControl","slots","composeClasses","useUtilityClasses","radioGroup","useRadioGroup","createChainedFunction","a","b","value","String","type","clsx","getRadioUtilityClass","actions","defaultValue","valueProp","rootRef","row","error","setValueState","controlled","default","focus","input","current","querySelector","handleRef","contextValue","event","target","Provider","role","undefined","getRadioGroupUtilityClass","ToolbarRoot","disableGutters","gutters","variant","alignItems","paddingLeft","spacing","paddingRight","breakpoints","up","minHeight","mixins","toolbar","component","as","getToolbarUtilityClass","A100","A200","A400","A700"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/3728.99a63442.chunk.js --- a/x/static/js/3728.99a63442.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[3728],{13728:(s,e,a)=>{a.r(e),a.d(e,{default:()=>b.A,getSvgIconUtilityClass:()=>l.E,svgIconClasses:()=>l.A});var b=a(2859),l=a(92703)}}]); 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client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M19.35 10.04C18.67 6.59 15.64 4 12 4 9.11 4 6.6 5.64 5.35 8.04 2.34 8.36 0 10.91 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5 0-2.64-2.05-4.78-4.65-4.96M14 13v4h-4v-4H7l5-5 5 5z\"\n}), 'CloudUpload');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2m1 15h-2v-2h2zm0-4h-2V7h2z\"\n}), 'Error');","\"use strict\";\n\nexports.__esModule = true;\n\nexports.default = function (file, acceptedFiles) {\n if (file && acceptedFiles) {\n var acceptedFilesArray = Array.isArray(acceptedFiles) ? acceptedFiles : acceptedFiles.split(',');\n var fileName = file.name || '';\n var mimeType = (file.type || '').toLowerCase();\n var baseMimeType = mimeType.replace(/\\/.*$/, '');\n return acceptedFilesArray.some(function (type) {\n var validType = type.trim().toLowerCase();\n\n if (validType.charAt(0) === '.') {\n return fileName.toLowerCase().endsWith(validType);\n } else if (validType.endsWith('/*')) {\n // This is something like a image/* mime type\n return baseMimeType === validType.replace(/\\/.*$/, '');\n }\n\n return mimeType === validType;\n });\n }\n\n return true;\n};","/**\n * Copyright (c) 2013-present, Facebook, Inc.\n *\n * This source code is licensed under the MIT license found in the\n * LICENSE file in the root directory of this source tree.\n */\n\n'use strict';\n\nvar ReactPropTypesSecret = require('./lib/ReactPropTypesSecret');\n\nfunction emptyFunction() {}\nfunction emptyFunctionWithReset() {}\nemptyFunctionWithReset.resetWarningCache = emptyFunction;\n\nmodule.exports = function() {\n function shim(props, propName, componentName, location, propFullName, secret) {\n if (secret === ReactPropTypesSecret) {\n // It is still safe when called from React.\n return;\n }\n var err = new Error(\n 'Calling PropTypes validators directly is not supported by the `prop-types` package. ' +\n 'Use PropTypes.checkPropTypes() to call them. ' +\n 'Read more at http://fb.me/use-check-prop-types'\n );\n err.name = 'Invariant Violation';\n throw err;\n };\n shim.isRequired = shim;\n function getShim() {\n return shim;\n };\n // Important!\n // Keep this list in sync with production version in `./factoryWithTypeCheckers.js`.\n var ReactPropTypes = {\n array: shim,\n bigint: shim,\n bool: shim,\n func: shim,\n number: shim,\n object: shim,\n string: shim,\n symbol: shim,\n\n any: shim,\n arrayOf: getShim,\n element: shim,\n elementType: shim,\n instanceOf: getShim,\n node: shim,\n objectOf: getShim,\n oneOf: getShim,\n oneOfType: getShim,\n shape: getShim,\n exact: getShim,\n\n checkPropTypes: emptyFunctionWithReset,\n resetWarningCache: emptyFunction\n };\n\n ReactPropTypes.PropTypes = ReactPropTypes;\n\n return ReactPropTypes;\n};\n","/**\n * Copyright (c) 2013-present, Facebook, Inc.\n *\n * This source code is licensed under the MIT license found in the\n * LICENSE file in the root directory of this source tree.\n */\n\nif (process.env.NODE_ENV !== 'production') {\n var ReactIs = require('react-is');\n\n // By explicitly using `prop-types` you are opting into new development behavior.\n // http://fb.me/prop-types-in-prod\n var throwOnDirectAccess = true;\n module.exports = require('./factoryWithTypeCheckers')(ReactIs.isElement, throwOnDirectAccess);\n} else {\n // By explicitly using `prop-types` you are opting into new production behavior.\n // http://fb.me/prop-types-in-prod\n module.exports = require('./factoryWithThrowingShims')();\n}\n","/**\n * Copyright (c) 2013-present, Facebook, Inc.\n *\n * This source code is licensed under the MIT license found in the\n * LICENSE file in the root directory of this source tree.\n */\n\n'use strict';\n\nvar ReactPropTypesSecret = 'SECRET_DO_NOT_PASS_THIS_OR_YOU_WILL_BE_FIRED';\n\nmodule.exports = ReactPropTypesSecret;\n","export const COMMON_MIME_TYPES = new Map([\n // https://developer.mozilla.org/en-US/docs/Web/HTTP/Basics_of_HTTP/MIME_types/Common_types\n ['aac', 'audio/aac'],\n ['abw', 'application/x-abiword'],\n ['arc', 'application/x-freearc'],\n ['avif', 'image/avif'],\n ['avi', 'video/x-msvideo'],\n ['azw', 'application/vnd.amazon.ebook'],\n ['bin', 'application/octet-stream'],\n ['bmp', 'image/bmp'],\n ['bz', 'application/x-bzip'],\n ['bz2', 'application/x-bzip2'],\n ['cda', 'application/x-cdf'],\n ['csh', 'application/x-csh'],\n ['css', 'text/css'],\n ['csv', 'text/csv'],\n ['doc', 'application/msword'],\n ['docx', 'application/vnd.openxmlformats-officedocument.wordprocessingml.document'],\n ['eot', 'application/vnd.ms-fontobject'],\n ['epub', 'application/epub+zip'],\n ['gz', 'application/gzip'],\n ['gif', 'image/gif'],\n ['heic', 'image/heic'],\n ['heif', 'image/heif'],\n ['htm', 'text/html'],\n ['html', 'text/html'],\n ['ico', 'image/vnd.microsoft.icon'],\n ['ics', 'text/calendar'],\n ['jar', 'application/java-archive'],\n ['jpeg', 'image/jpeg'],\n ['jpg', 'image/jpeg'],\n ['js', 'text/javascript'],\n ['json', 'application/json'],\n ['jsonld', 'application/ld+json'],\n ['mid', 'audio/midi'],\n ['midi', 'audio/midi'],\n ['mjs', 'text/javascript'],\n ['mp3', 'audio/mpeg'],\n ['mp4', 'video/mp4'],\n ['mpeg', 'video/mpeg'],\n ['mpkg', 'application/vnd.apple.installer+xml'],\n ['odp', 'application/vnd.oasis.opendocument.presentation'],\n ['ods', 'application/vnd.oasis.opendocument.spreadsheet'],\n ['odt', 'application/vnd.oasis.opendocument.text'],\n ['oga', 'audio/ogg'],\n ['ogv', 'video/ogg'],\n ['ogx', 'application/ogg'],\n ['opus', 'audio/opus'],\n ['otf', 'font/otf'],\n ['png', 'image/png'],\n ['pdf', 'application/pdf'],\n ['php', 'application/x-httpd-php'],\n ['ppt', 'application/vnd.ms-powerpoint'],\n ['pptx', 'application/vnd.openxmlformats-officedocument.presentationml.presentation'],\n ['rar', 'application/vnd.rar'],\n ['rtf', 'application/rtf'],\n ['sh', 'application/x-sh'],\n ['svg', 'image/svg+xml'],\n ['swf', 'application/x-shockwave-flash'],\n ['tar', 'application/x-tar'],\n ['tif', 'image/tiff'],\n ['tiff', 'image/tiff'],\n ['ts', 'video/mp2t'],\n ['ttf', 'font/ttf'],\n ['txt', 'text/plain'],\n ['vsd', 'application/vnd.visio'],\n ['wav', 'audio/wav'],\n ['weba', 'audio/webm'],\n ['webm', 'video/webm'],\n ['webp', 'image/webp'],\n ['woff', 'font/woff'],\n ['woff2', 'font/woff2'],\n ['xhtml', 'application/xhtml+xml'],\n ['xls', 'application/vnd.ms-excel'],\n ['xlsx', 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet'],\n ['xml', 'application/xml'],\n ['xul', 'application/vnd.mozilla.xul+xml'],\n ['zip', 'application/zip'],\n ['7z', 'application/x-7z-compressed'],\n\n // Others\n ['mkv', 'video/x-matroska'],\n ['mov', 'video/quicktime'],\n ['msg', 'application/vnd.ms-outlook']\n]);\n\n\nexport function toFileWithPath(file: FileWithPath, path?: string): FileWithPath {\n const f = withMimeType(file);\n if (typeof f.path !== 'string') { // on electron, path is already set to the absolute path\n const {webkitRelativePath} = file;\n Object.defineProperty(f, 'path', {\n value: typeof path === 'string'\n ? path\n // If is set,\n // the File will have a {webkitRelativePath} property\n // https://developer.mozilla.org/en-US/docs/Web/API/HTMLInputElement/webkitdirectory\n : typeof webkitRelativePath === 'string' && webkitRelativePath.length > 0\n ? webkitRelativePath\n : file.name,\n writable: false,\n configurable: false,\n enumerable: true\n });\n }\n\n return f;\n}\n\nexport interface FileWithPath extends File {\n readonly path?: string;\n}\n\nfunction withMimeType(file: FileWithPath) {\n const {name} = file;\n const hasExtension = name && name.lastIndexOf('.') !== -1;\n\n if (hasExtension && !file.type) {\n const ext = name.split('.')\n .pop()!.toLowerCase();\n const type = COMMON_MIME_TYPES.get(ext);\n if (type) {\n Object.defineProperty(file, 'type', {\n value: type,\n writable: false,\n configurable: false,\n enumerable: true\n });\n }\n }\n\n return file;\n}\n","import {FileWithPath, toFileWithPath} from './file';\n\n\nconst FILES_TO_IGNORE = [\n // Thumbnail cache files for macOS and Windows\n '.DS_Store', // macOs\n 'Thumbs.db' // Windows\n];\n\n\n/**\n * Convert a DragEvent's DataTrasfer object to a list of File objects\n * NOTE: If some of the items are folders,\n * everything will be flattened and placed in the same list but the paths will be kept as a {path} property.\n *\n * EXPERIMENTAL: A list of https://developer.mozilla.org/en-US/docs/Web/API/FileSystemHandle objects can also be passed as an arg\n * and a list of File objects will be returned.\n *\n * @param evt\n */\nexport async function fromEvent(evt: Event | any): Promise<(FileWithPath | DataTransferItem)[]> {\n if (isObject(evt) && isDataTransfer(evt.dataTransfer)) {\n return getDataTransferFiles(evt.dataTransfer, evt.type);\n } else if (isChangeEvt(evt)) {\n return getInputFiles(evt);\n } else if (Array.isArray(evt) && evt.every(item => 'getFile' in item && typeof item.getFile === 'function')) {\n return getFsHandleFiles(evt)\n }\n return [];\n}\n\nfunction isDataTransfer(value: any): value is DataTransfer {\n return isObject(value);\n}\n\nfunction isChangeEvt(value: any): value is Event {\n return isObject(value) && isObject(value.target);\n}\n\nfunction isObject(v: any): v is T {\n return typeof v === 'object' && v !== null\n}\n\nfunction getInputFiles(evt: Event) {\n return fromList((evt.target as HTMLInputElement).files).map(file => toFileWithPath(file));\n}\n\n// Ee expect each handle to be https://developer.mozilla.org/en-US/docs/Web/API/FileSystemFileHandle\nasync function getFsHandleFiles(handles: any[]) {\n const files = await Promise.all(handles.map(h => h.getFile()));\n return files.map(file => toFileWithPath(file));\n}\n\n\nasync function getDataTransferFiles(dt: DataTransfer, type: string) {\n // IE11 does not support dataTransfer.items\n // See https://developer.mozilla.org/en-US/docs/Web/API/DataTransfer/items#Browser_compatibility\n if (dt.items) {\n const items = fromList(dt.items)\n .filter(item => item.kind === 'file');\n // According to https://html.spec.whatwg.org/multipage/dnd.html#dndevents,\n // only 'dragstart' and 'drop' has access to the data (source node)\n if (type !== 'drop') {\n return items;\n }\n const files = await Promise.all(items.map(toFilePromises));\n return noIgnoredFiles(flatten(files));\n }\n\n return noIgnoredFiles(fromList(dt.files)\n .map(file => toFileWithPath(file)));\n}\n\nfunction noIgnoredFiles(files: FileWithPath[]) {\n return files.filter(file => FILES_TO_IGNORE.indexOf(file.name) === -1);\n}\n\n// IE11 does not support Array.from()\n// https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Array/from#Browser_compatibility\n// https://developer.mozilla.org/en-US/docs/Web/API/FileList\n// https://developer.mozilla.org/en-US/docs/Web/API/DataTransferItemList\nfunction fromList(items: DataTransferItemList | FileList | null): T[] {\n if (items === null) {\n return [];\n }\n\n const files = [];\n\n // tslint:disable: prefer-for-of\n for (let i = 0; i < items.length; i++) {\n const file = items[i];\n files.push(file);\n }\n\n return files as any;\n}\n\n// https://developer.mozilla.org/en-US/docs/Web/API/DataTransferItem\nfunction toFilePromises(item: DataTransferItem) {\n if (typeof item.webkitGetAsEntry !== 'function') {\n return fromDataTransferItem(item);\n }\n\n const entry = item.webkitGetAsEntry();\n\n // Safari supports dropping an image node from a different window and can be retrieved using\n // the DataTransferItem.getAsFile() API\n // NOTE: FileSystemEntry.file() throws if trying to get the file\n if (entry && entry.isDirectory) {\n return fromDirEntry(entry) as any;\n }\n\n return fromDataTransferItem(item);\n}\n\nfunction flatten(items: any[]): T[] {\n return items.reduce((acc, files) => [\n ...acc,\n ...(Array.isArray(files) ? flatten(files) : [files])\n ], []);\n}\n\nfunction fromDataTransferItem(item: DataTransferItem) {\n const file = item.getAsFile();\n if (!file) {\n return Promise.reject(`${item} is not a File`);\n }\n const fwp = toFileWithPath(file);\n return Promise.resolve(fwp);\n}\n\n// https://developer.mozilla.org/en-US/docs/Web/API/FileSystemEntry\nasync function fromEntry(entry: any) {\n return entry.isDirectory ? fromDirEntry(entry) : fromFileEntry(entry);\n}\n\n// https://developer.mozilla.org/en-US/docs/Web/API/FileSystemDirectoryEntry\nfunction fromDirEntry(entry: any) {\n const reader = entry.createReader();\n\n return new Promise((resolve, reject) => {\n const entries: Promise[] = [];\n\n function readEntries() {\n // https://developer.mozilla.org/en-US/docs/Web/API/FileSystemDirectoryEntry/createReader\n // https://developer.mozilla.org/en-US/docs/Web/API/FileSystemDirectoryReader/readEntries\n reader.readEntries(async (batch: any[]) => {\n if (!batch.length) {\n // Done reading directory\n try {\n const files = await Promise.all(entries);\n resolve(files);\n } catch (err) {\n reject(err);\n }\n } else {\n const items = Promise.all(batch.map(fromEntry));\n entries.push(items);\n\n // Continue reading\n readEntries();\n }\n }, (err: any) => {\n reject(err);\n });\n }\n\n readEntries();\n });\n}\n\n// https://developer.mozilla.org/en-US/docs/Web/API/FileSystemFileEntry\nasync function fromFileEntry(entry: any) {\n return new Promise((resolve, reject) => {\n entry.file((file: FileWithPath) => {\n const fwp = toFileWithPath(file, entry.fullPath);\n resolve(fwp);\n }, (err: any) => {\n reject(err);\n });\n });\n}\n\n// Infinite type recursion\n// https://github.com/Microsoft/TypeScript/issues/3496#issuecomment-128553540\ninterface FileArray extends Array {}\ntype FileValue = FileWithPath\n | FileArray[];\n","function _toConsumableArray(arr) { return _arrayWithoutHoles(arr) || _iterableToArray(arr) || _unsupportedIterableToArray(arr) || _nonIterableSpread(); }\n\nfunction _nonIterableSpread() { throw new TypeError(\"Invalid attempt to spread non-iterable instance.\\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method.\"); }\n\nfunction _iterableToArray(iter) { if (typeof Symbol !== \"undefined\" && iter[Symbol.iterator] != null || iter[\"@@iterator\"] != null) return Array.from(iter); }\n\nfunction _arrayWithoutHoles(arr) { if (Array.isArray(arr)) return _arrayLikeToArray(arr); }\n\nfunction ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }\n\nfunction _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { _defineProperty(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }\n\nfunction _defineProperty(obj, key, value) { if (key in obj) { Object.defineProperty(obj, key, { value: value, enumerable: true, configurable: true, writable: true }); } else { obj[key] = value; } return obj; }\n\nfunction _typeof(obj) { \"@babel/helpers - typeof\"; return _typeof = \"function\" == typeof Symbol && \"symbol\" == typeof Symbol.iterator ? function (obj) { return typeof obj; } : function (obj) { return obj && \"function\" == typeof Symbol && obj.constructor === Symbol && obj !== Symbol.prototype ? \"symbol\" : typeof obj; }, _typeof(obj); }\n\nfunction _slicedToArray(arr, i) { return _arrayWithHoles(arr) || _iterableToArrayLimit(arr, i) || _unsupportedIterableToArray(arr, i) || _nonIterableRest(); }\n\nfunction _nonIterableRest() { throw new TypeError(\"Invalid attempt to destructure non-iterable instance.\\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method.\"); }\n\nfunction _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === \"string\") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === \"Object\" && o.constructor) n = o.constructor.name; if (n === \"Map\" || n === \"Set\") return Array.from(o); if (n === \"Arguments\" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }\n\nfunction _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }\n\nfunction _iterableToArrayLimit(arr, i) { var _i = arr == null ? null : typeof Symbol !== \"undefined\" && arr[Symbol.iterator] || arr[\"@@iterator\"]; if (_i == null) return; var _arr = []; var _n = true; var _d = false; var _s, _e; try { for (_i = _i.call(arr); !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i[\"return\"] != null) _i[\"return\"](); } finally { if (_d) throw _e; } } return _arr; }\n\nfunction _arrayWithHoles(arr) { if (Array.isArray(arr)) return arr; }\n\nimport accepts from \"attr-accept\"; // Error codes\n\nexport var FILE_INVALID_TYPE = \"file-invalid-type\";\nexport var FILE_TOO_LARGE = \"file-too-large\";\nexport var FILE_TOO_SMALL = \"file-too-small\";\nexport var TOO_MANY_FILES = \"too-many-files\";\nexport var ErrorCode = {\n FileInvalidType: FILE_INVALID_TYPE,\n FileTooLarge: FILE_TOO_LARGE,\n FileTooSmall: FILE_TOO_SMALL,\n TooManyFiles: TOO_MANY_FILES\n}; // File Errors\n\nexport var getInvalidTypeRejectionErr = function getInvalidTypeRejectionErr(accept) {\n accept = Array.isArray(accept) && accept.length === 1 ? accept[0] : accept;\n var messageSuffix = Array.isArray(accept) ? \"one of \".concat(accept.join(\", \")) : accept;\n return {\n code: FILE_INVALID_TYPE,\n message: \"File type must be \".concat(messageSuffix)\n };\n};\nexport var getTooLargeRejectionErr = function getTooLargeRejectionErr(maxSize) {\n return {\n code: FILE_TOO_LARGE,\n message: \"File is larger than \".concat(maxSize, \" \").concat(maxSize === 1 ? \"byte\" : \"bytes\")\n };\n};\nexport var getTooSmallRejectionErr = function getTooSmallRejectionErr(minSize) {\n return {\n code: FILE_TOO_SMALL,\n message: \"File is smaller than \".concat(minSize, \" \").concat(minSize === 1 ? \"byte\" : \"bytes\")\n };\n};\nexport var TOO_MANY_FILES_REJECTION = {\n code: TOO_MANY_FILES,\n message: \"Too many files\"\n}; // Firefox versions prior to 53 return a bogus MIME type for every file drag, so dragovers with\n// that MIME type will always be accepted\n\nexport function fileAccepted(file, accept) {\n var isAcceptable = file.type === \"application/x-moz-file\" || accepts(file, accept);\n return [isAcceptable, isAcceptable ? null : getInvalidTypeRejectionErr(accept)];\n}\nexport function fileMatchSize(file, minSize, maxSize) {\n if (isDefined(file.size)) {\n if (isDefined(minSize) && isDefined(maxSize)) {\n if (file.size > maxSize) return [false, getTooLargeRejectionErr(maxSize)];\n if (file.size < minSize) return [false, getTooSmallRejectionErr(minSize)];\n } else if (isDefined(minSize) && file.size < minSize) return [false, getTooSmallRejectionErr(minSize)];else if (isDefined(maxSize) && file.size > maxSize) return [false, getTooLargeRejectionErr(maxSize)];\n }\n\n return [true, null];\n}\n\nfunction isDefined(value) {\n return value !== undefined && value !== null;\n}\n/**\n *\n * @param {object} options\n * @param {File[]} options.files\n * @param {string|string[]} [options.accept]\n * @param {number} [options.minSize]\n * @param {number} [options.maxSize]\n * @param {boolean} [options.multiple]\n * @param {number} [options.maxFiles]\n * @param {(f: File) => FileError|FileError[]|null} [options.validator]\n * @returns\n */\n\n\nexport function allFilesAccepted(_ref) {\n var files = _ref.files,\n accept = _ref.accept,\n minSize = _ref.minSize,\n maxSize = _ref.maxSize,\n multiple = _ref.multiple,\n maxFiles = _ref.maxFiles,\n validator = _ref.validator;\n\n if (!multiple && files.length > 1 || multiple && maxFiles >= 1 && files.length > maxFiles) {\n return false;\n }\n\n return files.every(function (file) {\n var _fileAccepted = fileAccepted(file, accept),\n _fileAccepted2 = _slicedToArray(_fileAccepted, 1),\n accepted = _fileAccepted2[0];\n\n var _fileMatchSize = fileMatchSize(file, minSize, maxSize),\n _fileMatchSize2 = _slicedToArray(_fileMatchSize, 1),\n sizeMatch = _fileMatchSize2[0];\n\n var customErrors = validator ? validator(file) : null;\n return accepted && sizeMatch && !customErrors;\n });\n} // React's synthetic events has event.isPropagationStopped,\n// but to remain compatibility with other libs (Preact) fall back\n// to check event.cancelBubble\n\nexport function isPropagationStopped(event) {\n if (typeof event.isPropagationStopped === \"function\") {\n return event.isPropagationStopped();\n } else if (typeof event.cancelBubble !== \"undefined\") {\n return event.cancelBubble;\n }\n\n return false;\n}\nexport function isEvtWithFiles(event) {\n if (!event.dataTransfer) {\n return !!event.target && !!event.target.files;\n } // https://developer.mozilla.org/en-US/docs/Web/API/DataTransfer/types\n // https://developer.mozilla.org/en-US/docs/Web/API/HTML_Drag_and_Drop_API/Recommended_drag_types#file\n\n\n return Array.prototype.some.call(event.dataTransfer.types, function (type) {\n return type === \"Files\" || type === \"application/x-moz-file\";\n });\n}\nexport function isKindFile(item) {\n return _typeof(item) === \"object\" && item !== null && item.kind === \"file\";\n} // allow the entire document to be a drag target\n\nexport function onDocumentDragOver(event) {\n event.preventDefault();\n}\n\nfunction isIe(userAgent) {\n return userAgent.indexOf(\"MSIE\") !== -1 || userAgent.indexOf(\"Trident/\") !== -1;\n}\n\nfunction isEdge(userAgent) {\n return userAgent.indexOf(\"Edge/\") !== -1;\n}\n\nexport function isIeOrEdge() {\n var userAgent = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : window.navigator.userAgent;\n return isIe(userAgent) || isEdge(userAgent);\n}\n/**\n * This is intended to be used to compose event handlers\n * They are executed in order until one of them calls `event.isPropagationStopped()`.\n * Note that the check is done on the first invoke too,\n * meaning that if propagation was stopped before invoking the fns,\n * no handlers will be executed.\n *\n * @param {Function} fns the event hanlder functions\n * @return {Function} the event handler to add to an element\n */\n\nexport function composeEventHandlers() {\n for (var _len = arguments.length, fns = new Array(_len), _key = 0; _key < _len; _key++) {\n fns[_key] = arguments[_key];\n }\n\n return function (event) {\n for (var _len2 = arguments.length, args = new Array(_len2 > 1 ? _len2 - 1 : 0), _key2 = 1; _key2 < _len2; _key2++) {\n args[_key2 - 1] = arguments[_key2];\n }\n\n return fns.some(function (fn) {\n if (!isPropagationStopped(event) && fn) {\n fn.apply(void 0, [event].concat(args));\n }\n\n return isPropagationStopped(event);\n });\n };\n}\n/**\n * canUseFileSystemAccessAPI checks if the [File System Access API](https://developer.mozilla.org/en-US/docs/Web/API/File_System_Access_API)\n * is supported by the browser.\n * @returns {boolean}\n */\n\nexport function canUseFileSystemAccessAPI() {\n return \"showOpenFilePicker\" in window;\n}\n/**\n * Convert the `{accept}` dropzone prop to the\n * `{types}` option for https://developer.mozilla.org/en-US/docs/Web/API/window/showOpenFilePicker\n *\n * @param {AcceptProp} accept\n * @returns {{accept: string[]}[]}\n */\n\nexport function pickerOptionsFromAccept(accept) {\n if (isDefined(accept)) {\n var acceptForPicker = Object.entries(accept).filter(function (_ref2) {\n var _ref3 = _slicedToArray(_ref2, 2),\n mimeType = _ref3[0],\n ext = _ref3[1];\n\n var ok = true;\n\n if (!isMIMEType(mimeType)) {\n console.warn(\"Skipped \\\"\".concat(mimeType, \"\\\" because it is not a valid MIME type. Check https://developer.mozilla.org/en-US/docs/Web/HTTP/Basics_of_HTTP/MIME_types/Common_types for a list of valid MIME types.\"));\n ok = false;\n }\n\n if (!Array.isArray(ext) || !ext.every(isExt)) {\n console.warn(\"Skipped \\\"\".concat(mimeType, \"\\\" because an invalid file extension was provided.\"));\n ok = false;\n }\n\n return ok;\n }).reduce(function (agg, _ref4) {\n var _ref5 = _slicedToArray(_ref4, 2),\n mimeType = _ref5[0],\n ext = _ref5[1];\n\n return _objectSpread(_objectSpread({}, agg), {}, _defineProperty({}, mimeType, ext));\n }, {});\n return [{\n // description is required due to https://crbug.com/1264708\n description: \"Files\",\n accept: acceptForPicker\n }];\n }\n\n return accept;\n}\n/**\n * Convert the `{accept}` dropzone prop to an array of MIME types/extensions.\n * @param {AcceptProp} accept\n * @returns {string}\n */\n\nexport function acceptPropAsAcceptAttr(accept) {\n if (isDefined(accept)) {\n return Object.entries(accept).reduce(function (a, _ref6) {\n var _ref7 = _slicedToArray(_ref6, 2),\n mimeType = _ref7[0],\n ext = _ref7[1];\n\n return [].concat(_toConsumableArray(a), [mimeType], _toConsumableArray(ext));\n }, []) // Silently discard invalid entries as pickerOptionsFromAccept warns about these\n .filter(function (v) {\n return isMIMEType(v) || isExt(v);\n }).join(\",\");\n }\n\n return undefined;\n}\n/**\n * Check if v is an exception caused by aborting a request (e.g window.showOpenFilePicker()).\n *\n * See https://developer.mozilla.org/en-US/docs/Web/API/DOMException.\n * @param {any} v\n * @returns {boolean} True if v is an abort exception.\n */\n\nexport function isAbort(v) {\n return v instanceof DOMException && (v.name === \"AbortError\" || v.code === v.ABORT_ERR);\n}\n/**\n * Check if v is a security error.\n *\n * See https://developer.mozilla.org/en-US/docs/Web/API/DOMException.\n * @param {any} v\n * @returns {boolean} True if v is a security error.\n */\n\nexport function isSecurityError(v) {\n return v instanceof DOMException && (v.name === \"SecurityError\" || v.code === v.SECURITY_ERR);\n}\n/**\n * Check if v is a MIME type string.\n *\n * See accepted format: https://developer.mozilla.org/en-US/docs/Web/HTML/Element/input/file#unique_file_type_specifiers.\n *\n * @param {string} v\n */\n\nexport function isMIMEType(v) {\n return v === \"audio/*\" || v === \"video/*\" || v === \"image/*\" || v === \"text/*\" || /\\w+\\/[-+.\\w]+/g.test(v);\n}\n/**\n * Check if v is a file extension.\n * @param {string} v\n */\n\nexport function isExt(v) {\n return /^.*\\.[\\w]+$/.test(v);\n}\n/**\n * @typedef {Object.} AcceptProp\n */\n\n/**\n * @typedef {object} FileError\n * @property {string} message\n * @property {ErrorCode|string} code\n */\n\n/**\n * @typedef {\"file-invalid-type\"|\"file-too-large\"|\"file-too-small\"|\"too-many-files\"} ErrorCode\n */","var _excluded = [\"children\"],\n _excluded2 = [\"open\"],\n _excluded3 = [\"refKey\", \"role\", \"onKeyDown\", \"onFocus\", \"onBlur\", \"onClick\", \"onDragEnter\", \"onDragOver\", \"onDragLeave\", \"onDrop\"],\n _excluded4 = [\"refKey\", \"onChange\", \"onClick\"];\n\nfunction _toConsumableArray(arr) { return _arrayWithoutHoles(arr) || _iterableToArray(arr) || _unsupportedIterableToArray(arr) || _nonIterableSpread(); }\n\nfunction _nonIterableSpread() { throw new TypeError(\"Invalid attempt to spread non-iterable instance.\\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method.\"); }\n\nfunction _iterableToArray(iter) { if (typeof Symbol !== \"undefined\" && iter[Symbol.iterator] != null || iter[\"@@iterator\"] != null) return Array.from(iter); }\n\nfunction _arrayWithoutHoles(arr) { if (Array.isArray(arr)) return _arrayLikeToArray(arr); }\n\nfunction _slicedToArray(arr, i) { return _arrayWithHoles(arr) || _iterableToArrayLimit(arr, i) || _unsupportedIterableToArray(arr, i) || _nonIterableRest(); }\n\nfunction _nonIterableRest() { throw new TypeError(\"Invalid attempt to destructure non-iterable instance.\\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method.\"); }\n\nfunction _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === \"string\") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === \"Object\" && o.constructor) n = o.constructor.name; if (n === \"Map\" || n === \"Set\") return Array.from(o); if (n === \"Arguments\" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }\n\nfunction _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }\n\nfunction _iterableToArrayLimit(arr, i) { var _i = arr == null ? null : typeof Symbol !== \"undefined\" && arr[Symbol.iterator] || arr[\"@@iterator\"]; if (_i == null) return; var _arr = []; var _n = true; var _d = false; var _s, _e; try { for (_i = _i.call(arr); !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i[\"return\"] != null) _i[\"return\"](); } finally { if (_d) throw _e; } } return _arr; }\n\nfunction _arrayWithHoles(arr) { if (Array.isArray(arr)) return arr; }\n\nfunction ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }\n\nfunction _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { _defineProperty(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }\n\nfunction _defineProperty(obj, key, value) { if (key in obj) { Object.defineProperty(obj, key, { value: value, enumerable: true, configurable: true, writable: true }); } else { obj[key] = value; } return obj; }\n\nfunction _objectWithoutProperties(source, excluded) { if (source == null) return {}; var target = _objectWithoutPropertiesLoose(source, excluded); var key, i; if (Object.getOwnPropertySymbols) { var sourceSymbolKeys = Object.getOwnPropertySymbols(source); for (i = 0; i < sourceSymbolKeys.length; i++) { key = sourceSymbolKeys[i]; if (excluded.indexOf(key) >= 0) continue; if (!Object.prototype.propertyIsEnumerable.call(source, key)) continue; target[key] = source[key]; } } return target; }\n\nfunction _objectWithoutPropertiesLoose(source, excluded) { if (source == null) return {}; var target = {}; var sourceKeys = Object.keys(source); var key, i; for (i = 0; i < sourceKeys.length; i++) { key = sourceKeys[i]; if (excluded.indexOf(key) >= 0) continue; target[key] = source[key]; } return target; }\n\n/* eslint prefer-template: 0 */\nimport React, { forwardRef, Fragment, useCallback, useEffect, useImperativeHandle, useMemo, useReducer, useRef } from \"react\";\nimport PropTypes from \"prop-types\";\nimport { fromEvent } from \"file-selector\";\nimport { acceptPropAsAcceptAttr, allFilesAccepted, composeEventHandlers, fileAccepted, fileMatchSize, canUseFileSystemAccessAPI, isAbort, isEvtWithFiles, isIeOrEdge, isPropagationStopped, isSecurityError, onDocumentDragOver, pickerOptionsFromAccept, TOO_MANY_FILES_REJECTION } from \"./utils/index\";\n/**\n * Convenience wrapper component for the `useDropzone` hook\n *\n * ```jsx\n * \n * {({getRootProps, getInputProps}) => (\n *

\n * \n *

Drag 'n' drop some files here, or click to select files

\n *

\n * )}\n * \n * ```\n */\n\nvar Dropzone = /*#__PURE__*/forwardRef(function (_ref, ref) {\n var children = _ref.children,\n params = _objectWithoutProperties(_ref, _excluded);\n\n var _useDropzone = useDropzone(params),\n open = _useDropzone.open,\n props = _objectWithoutProperties(_useDropzone, _excluded2);\n\n useImperativeHandle(ref, function () {\n return {\n open: open\n };\n }, [open]); // TODO: Figure out why react-styleguidist cannot create docs if we don't return a jsx element\n\n return /*#__PURE__*/React.createElement(Fragment, null, children(_objectSpread(_objectSpread({}, props), {}, {\n open: open\n })));\n});\nDropzone.displayName = \"Dropzone\"; // Add default props for react-docgen\n\nvar defaultProps = {\n disabled: false,\n getFilesFromEvent: fromEvent,\n maxSize: Infinity,\n minSize: 0,\n multiple: true,\n maxFiles: 0,\n preventDropOnDocument: true,\n noClick: false,\n noKeyboard: false,\n noDrag: false,\n noDragEventsBubbling: false,\n validator: null,\n useFsAccessApi: true,\n autoFocus: false\n};\nDropzone.defaultProps = defaultProps;\nDropzone.propTypes = {\n /**\n * Render function that exposes the dropzone state and prop getter fns\n *\n * @param {object} params\n * @param {Function} params.getRootProps Returns the props you should apply to the root drop container you render\n * @param {Function} params.getInputProps Returns the props you should apply to hidden file input you render\n * @param {Function} params.open Open the native file selection dialog\n * @param {boolean} params.isFocused Dropzone area is in focus\n * @param {boolean} params.isFileDialogActive File dialog is opened\n * @param {boolean} params.isDragActive Active drag is in progress\n * @param {boolean} params.isDragAccept Dragged files are accepted\n * @param {boolean} params.isDragReject Some dragged files are rejected\n * @param {File[]} params.acceptedFiles Accepted files\n * @param {FileRejection[]} params.fileRejections Rejected files and why they were rejected\n */\n children: PropTypes.func,\n\n /**\n * Set accepted file types.\n * Checkout https://developer.mozilla.org/en-US/docs/Web/API/window/showOpenFilePicker types option for more information.\n * Keep in mind that mime type determination is not reliable across platforms. CSV files,\n * for example, are reported as text/plain under macOS but as application/vnd.ms-excel under\n * Windows. In some cases there might not be a mime type set at all (https://github.com/react-dropzone/react-dropzone/issues/276).\n */\n accept: PropTypes.objectOf(PropTypes.arrayOf(PropTypes.string)),\n\n /**\n * Allow drag 'n' drop (or selection from the file dialog) of multiple files\n */\n multiple: PropTypes.bool,\n\n /**\n * If false, allow dropped items to take over the current browser window\n */\n preventDropOnDocument: PropTypes.bool,\n\n /**\n * If true, disables click to open the native file selection dialog\n */\n noClick: PropTypes.bool,\n\n /**\n * If true, disables SPACE/ENTER to open the native file selection dialog.\n * Note that it also stops tracking the focus state.\n */\n noKeyboard: PropTypes.bool,\n\n /**\n * If true, disables drag 'n' drop\n */\n noDrag: PropTypes.bool,\n\n /**\n * If true, stops drag event propagation to parents\n */\n noDragEventsBubbling: PropTypes.bool,\n\n /**\n * Minimum file size (in bytes)\n */\n minSize: PropTypes.number,\n\n /**\n * Maximum file size (in bytes)\n */\n maxSize: PropTypes.number,\n\n /**\n * Maximum accepted number of files\n * The default value is 0 which means there is no limitation to how many files are accepted.\n */\n maxFiles: PropTypes.number,\n\n /**\n * Enable/disable the dropzone\n */\n disabled: PropTypes.bool,\n\n /**\n * Use this to provide a custom file aggregator\n *\n * @param {(DragEvent|Event)} event A drag event or input change event (if files were selected via the file dialog)\n */\n getFilesFromEvent: PropTypes.func,\n\n /**\n * Cb for when closing the file dialog with no selection\n */\n onFileDialogCancel: PropTypes.func,\n\n /**\n * Cb for when opening the file dialog\n */\n onFileDialogOpen: PropTypes.func,\n\n /**\n * Set to true to use the https://developer.mozilla.org/en-US/docs/Web/API/File_System_Access_API\n * to open the file picker instead of using an `` click event.\n */\n useFsAccessApi: PropTypes.bool,\n\n /**\n * Set to true to focus the root element on render\n */\n autoFocus: PropTypes.bool,\n\n /**\n * Cb for when the `dragenter` event occurs.\n *\n * @param {DragEvent} event\n */\n onDragEnter: PropTypes.func,\n\n /**\n * Cb for when the `dragleave` event occurs\n *\n * @param {DragEvent} event\n */\n onDragLeave: PropTypes.func,\n\n /**\n * Cb for when the `dragover` event occurs\n *\n * @param {DragEvent} event\n */\n onDragOver: PropTypes.func,\n\n /**\n * Cb for when the `drop` event occurs.\n * Note that this callback is invoked after the `getFilesFromEvent` callback is done.\n *\n * Files are accepted or rejected based on the `accept`, `multiple`, `minSize` and `maxSize` props.\n * `accept` must be a valid [MIME type](http://www.iana.org/assignments/media-types/media-types.xhtml) according to [input element specification](https://www.w3.org/wiki/HTML/Elements/input/file) or a valid file extension.\n * If `multiple` is set to false and additional files are dropped,\n * all files besides the first will be rejected.\n * Any file which does not have a size in the [`minSize`, `maxSize`] range, will be rejected as well.\n *\n * Note that the `onDrop` callback will always be invoked regardless if the dropped files were accepted or rejected.\n * If you'd like to react to a specific scenario, use the `onDropAccepted`/`onDropRejected` props.\n *\n * `onDrop` will provide you with an array of [File](https://developer.mozilla.org/en-US/docs/Web/API/File) objects which you can then process and send to a server.\n * For example, with [SuperAgent](https://github.com/visionmedia/superagent) as a http/ajax library:\n *\n * ```js\n * function onDrop(acceptedFiles) {\n * const req = request.post('/upload')\n * acceptedFiles.forEach(file => {\n * req.attach(file.name, file)\n * })\n * req.end(callback)\n * }\n * ```\n *\n * @param {File[]} acceptedFiles\n * @param {FileRejection[]} fileRejections\n * @param {(DragEvent|Event)} event A drag event or input change event (if files were selected via the file dialog)\n */\n onDrop: PropTypes.func,\n\n /**\n * Cb for when the `drop` event occurs.\n * Note that if no files are accepted, this callback is not invoked.\n *\n * @param {File[]} files\n * @param {(DragEvent|Event)} event\n */\n onDropAccepted: PropTypes.func,\n\n /**\n * Cb for when the `drop` event occurs.\n * Note that if no files are rejected, this callback is not invoked.\n *\n * @param {FileRejection[]} fileRejections\n * @param {(DragEvent|Event)} event\n */\n onDropRejected: PropTypes.func,\n\n /**\n * Cb for when there's some error from any of the promises.\n *\n * @param {Error} error\n */\n onError: PropTypes.func,\n\n /**\n * Custom validation function. It must return null if there's no errors.\n * @param {File} file\n * @returns {FileError|FileError[]|null}\n */\n validator: PropTypes.func\n};\nexport default Dropzone;\n/**\n * A function that is invoked for the `dragenter`,\n * `dragover` and `dragleave` events.\n * It is not invoked if the items are not files (such as link, text, etc.).\n *\n * @callback dragCb\n * @param {DragEvent} event\n */\n\n/**\n * A function that is invoked for the `drop` or input change event.\n * It is not invoked if the items are not files (such as link, text, etc.).\n *\n * @callback dropCb\n * @param {File[]} acceptedFiles List of accepted files\n * @param {FileRejection[]} fileRejections List of rejected files and why they were rejected\n * @param {(DragEvent|Event)} event A drag event or input change event (if files were selected via the file dialog)\n */\n\n/**\n * A function that is invoked for the `drop` or input change event.\n * It is not invoked if the items are files (such as link, text, etc.).\n *\n * @callback dropAcceptedCb\n * @param {File[]} files List of accepted files that meet the given criteria\n * (`accept`, `multiple`, `minSize`, `maxSize`)\n * @param {(DragEvent|Event)} event A drag event or input change event (if files were selected via the file dialog)\n */\n\n/**\n * A function that is invoked for the `drop` or input change event.\n *\n * @callback dropRejectedCb\n * @param {File[]} files List of rejected files that do not meet the given criteria\n * (`accept`, `multiple`, `minSize`, `maxSize`)\n * @param {(DragEvent|Event)} event A drag event or input change event (if files were selected via the file dialog)\n */\n\n/**\n * A function that is used aggregate files,\n * in a asynchronous fashion, from drag or input change events.\n *\n * @callback getFilesFromEvent\n * @param {(DragEvent|Event)} event A drag event or input change event (if files were selected via the file dialog)\n * @returns {(File[]|Promise)}\n */\n\n/**\n * An object with the current dropzone state.\n *\n * @typedef {object} DropzoneState\n * @property {boolean} isFocused Dropzone area is in focus\n * @property {boolean} isFileDialogActive File dialog is opened\n * @property {boolean} isDragActive Active drag is in progress\n * @property {boolean} isDragAccept Dragged files are accepted\n * @property {boolean} isDragReject Some dragged files are rejected\n * @property {File[]} acceptedFiles Accepted files\n * @property {FileRejection[]} fileRejections Rejected files and why they were rejected\n */\n\n/**\n * An object with the dropzone methods.\n *\n * @typedef {object} DropzoneMethods\n * @property {Function} getRootProps Returns the props you should apply to the root drop container you render\n * @property {Function} getInputProps Returns the props you should apply to hidden file input you render\n * @property {Function} open Open the native file selection dialog\n */\n\nvar initialState = {\n isFocused: false,\n isFileDialogActive: false,\n isDragActive: false,\n isDragAccept: false,\n isDragReject: false,\n acceptedFiles: [],\n fileRejections: []\n};\n/**\n * A React hook that creates a drag 'n' drop area.\n *\n * ```jsx\n * function MyDropzone(props) {\n * const {getRootProps, getInputProps} = useDropzone({\n * onDrop: acceptedFiles => {\n * // do something with the File objects, e.g. upload to some server\n * }\n * });\n * return (\n *

\n * \n *

Drag and drop some files here, or click to select files

\n *

\n * )\n * }\n * ```\n *\n * @function useDropzone\n *\n * @param {object} props\n * @param {import(\"./utils\").AcceptProp} [props.accept] Set accepted file types.\n * Checkout https://developer.mozilla.org/en-US/docs/Web/API/window/showOpenFilePicker types option for more information.\n * Keep in mind that mime type determination is not reliable across platforms. CSV files,\n * for example, are reported as text/plain under macOS but as application/vnd.ms-excel under\n * Windows. In some cases there might not be a mime type set at all (https://github.com/react-dropzone/react-dropzone/issues/276).\n * @param {boolean} [props.multiple=true] Allow drag 'n' drop (or selection from the file dialog) of multiple files\n * @param {boolean} [props.preventDropOnDocument=true] If false, allow dropped items to take over the current browser window\n * @param {boolean} [props.noClick=false] If true, disables click to open the native file selection dialog\n * @param {boolean} [props.noKeyboard=false] If true, disables SPACE/ENTER to open the native file selection dialog.\n * Note that it also stops tracking the focus state.\n * @param {boolean} [props.noDrag=false] If true, disables drag 'n' drop\n * @param {boolean} [props.noDragEventsBubbling=false] If true, stops drag event propagation to parents\n * @param {number} [props.minSize=0] Minimum file size (in bytes)\n * @param {number} [props.maxSize=Infinity] Maximum file size (in bytes)\n * @param {boolean} [props.disabled=false] Enable/disable the dropzone\n * @param {getFilesFromEvent} [props.getFilesFromEvent] Use this to provide a custom file aggregator\n * @param {Function} [props.onFileDialogCancel] Cb for when closing the file dialog with no selection\n * @param {boolean} [props.useFsAccessApi] Set to true to use the https://developer.mozilla.org/en-US/docs/Web/API/File_System_Access_API\n * to open the file picker instead of using an `` click event.\n * @param {boolean} autoFocus Set to true to auto focus the root element.\n * @param {Function} [props.onFileDialogOpen] Cb for when opening the file dialog\n * @param {dragCb} [props.onDragEnter] Cb for when the `dragenter` event occurs.\n * @param {dragCb} [props.onDragLeave] Cb for when the `dragleave` event occurs\n * @param {dragCb} [props.onDragOver] Cb for when the `dragover` event occurs\n * @param {dropCb} [props.onDrop] Cb for when the `drop` event occurs.\n * Note that this callback is invoked after the `getFilesFromEvent` callback is done.\n *\n * Files are accepted or rejected based on the `accept`, `multiple`, `minSize` and `maxSize` props.\n * `accept` must be an object with keys as a valid [MIME type](http://www.iana.org/assignments/media-types/media-types.xhtml) according to [input element specification](https://www.w3.org/wiki/HTML/Elements/input/file) and the value an array of file extensions (optional).\n * If `multiple` is set to false and additional files are dropped,\n * all files besides the first will be rejected.\n * Any file which does not have a size in the [`minSize`, `maxSize`] range, will be rejected as well.\n *\n * Note that the `onDrop` callback will always be invoked regardless if the dropped files were accepted or rejected.\n * If you'd like to react to a specific scenario, use the `onDropAccepted`/`onDropRejected` props.\n *\n * `onDrop` will provide you with an array of [File](https://developer.mozilla.org/en-US/docs/Web/API/File) objects which you can then process and send to a server.\n * For example, with [SuperAgent](https://github.com/visionmedia/superagent) as a http/ajax library:\n *\n * ```js\n * function onDrop(acceptedFiles) {\n * const req = request.post('/upload')\n * acceptedFiles.forEach(file => {\n * req.attach(file.name, file)\n * })\n * req.end(callback)\n * }\n * ```\n * @param {dropAcceptedCb} [props.onDropAccepted]\n * @param {dropRejectedCb} [props.onDropRejected]\n * @param {(error: Error) => void} [props.onError]\n *\n * @returns {DropzoneState & DropzoneMethods}\n */\n\nexport function useDropzone() {\n var props = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};\n\n var _defaultProps$props = _objectSpread(_objectSpread({}, defaultProps), props),\n accept = _defaultProps$props.accept,\n disabled = _defaultProps$props.disabled,\n getFilesFromEvent = _defaultProps$props.getFilesFromEvent,\n maxSize = _defaultProps$props.maxSize,\n minSize = _defaultProps$props.minSize,\n multiple = _defaultProps$props.multiple,\n maxFiles = _defaultProps$props.maxFiles,\n onDragEnter = _defaultProps$props.onDragEnter,\n onDragLeave = _defaultProps$props.onDragLeave,\n onDragOver = _defaultProps$props.onDragOver,\n onDrop = _defaultProps$props.onDrop,\n onDropAccepted = _defaultProps$props.onDropAccepted,\n onDropRejected = _defaultProps$props.onDropRejected,\n onFileDialogCancel = _defaultProps$props.onFileDialogCancel,\n onFileDialogOpen = _defaultProps$props.onFileDialogOpen,\n useFsAccessApi = _defaultProps$props.useFsAccessApi,\n autoFocus = _defaultProps$props.autoFocus,\n preventDropOnDocument = _defaultProps$props.preventDropOnDocument,\n noClick = _defaultProps$props.noClick,\n noKeyboard = _defaultProps$props.noKeyboard,\n noDrag = _defaultProps$props.noDrag,\n noDragEventsBubbling = _defaultProps$props.noDragEventsBubbling,\n onError = _defaultProps$props.onError,\n validator = _defaultProps$props.validator;\n\n var acceptAttr = useMemo(function () {\n return acceptPropAsAcceptAttr(accept);\n }, [accept]);\n var pickerTypes = useMemo(function () {\n return pickerOptionsFromAccept(accept);\n }, [accept]);\n var onFileDialogOpenCb = useMemo(function () {\n return typeof onFileDialogOpen === \"function\" ? onFileDialogOpen : noop;\n }, [onFileDialogOpen]);\n var onFileDialogCancelCb = useMemo(function () {\n return typeof onFileDialogCancel === \"function\" ? onFileDialogCancel : noop;\n }, [onFileDialogCancel]);\n /**\n * @constant\n * @type {React.MutableRefObject}\n */\n\n var rootRef = useRef(null);\n var inputRef = useRef(null);\n\n var _useReducer = useReducer(reducer, initialState),\n _useReducer2 = _slicedToArray(_useReducer, 2),\n state = _useReducer2[0],\n dispatch = _useReducer2[1];\n\n var isFocused = state.isFocused,\n isFileDialogActive = state.isFileDialogActive;\n var fsAccessApiWorksRef = useRef(typeof window !== \"undefined\" && window.isSecureContext && useFsAccessApi && canUseFileSystemAccessAPI()); // Update file dialog active state when the window is focused on\n\n var onWindowFocus = function onWindowFocus() {\n // Execute the timeout only if the file dialog is opened in the browser\n if (!fsAccessApiWorksRef.current && isFileDialogActive) {\n setTimeout(function () {\n if (inputRef.current) {\n var files = inputRef.current.files;\n\n if (!files.length) {\n dispatch({\n type: \"closeDialog\"\n });\n onFileDialogCancelCb();\n }\n }\n }, 300);\n }\n };\n\n useEffect(function () {\n window.addEventListener(\"focus\", onWindowFocus, false);\n return function () {\n window.removeEventListener(\"focus\", onWindowFocus, false);\n };\n }, [inputRef, isFileDialogActive, onFileDialogCancelCb, fsAccessApiWorksRef]);\n var dragTargetsRef = useRef([]);\n\n var onDocumentDrop = function onDocumentDrop(event) {\n if (rootRef.current && rootRef.current.contains(event.target)) {\n // If we intercepted an event for our instance, let it propagate down to the instance's onDrop handler\n return;\n }\n\n event.preventDefault();\n dragTargetsRef.current = [];\n };\n\n useEffect(function () {\n if (preventDropOnDocument) {\n document.addEventListener(\"dragover\", onDocumentDragOver, false);\n document.addEventListener(\"drop\", onDocumentDrop, false);\n }\n\n return function () {\n if (preventDropOnDocument) {\n document.removeEventListener(\"dragover\", onDocumentDragOver);\n document.removeEventListener(\"drop\", onDocumentDrop);\n }\n };\n }, [rootRef, preventDropOnDocument]); // Auto focus the root when autoFocus is true\n\n useEffect(function () {\n if (!disabled && autoFocus && rootRef.current) {\n rootRef.current.focus();\n }\n\n return function () {};\n }, [rootRef, autoFocus, disabled]);\n var onErrCb = useCallback(function (e) {\n if (onError) {\n onError(e);\n } else {\n // Let the user know something's gone wrong if they haven't provided the onError cb.\n console.error(e);\n }\n }, [onError]);\n var onDragEnterCb = useCallback(function (event) {\n event.preventDefault(); // Persist here because we need the event later after getFilesFromEvent() is done\n\n event.persist();\n stopPropagation(event);\n dragTargetsRef.current = [].concat(_toConsumableArray(dragTargetsRef.current), [event.target]);\n\n if (isEvtWithFiles(event)) {\n Promise.resolve(getFilesFromEvent(event)).then(function (files) {\n if (isPropagationStopped(event) && !noDragEventsBubbling) {\n return;\n }\n\n var fileCount = files.length;\n var isDragAccept = fileCount > 0 && allFilesAccepted({\n files: files,\n accept: acceptAttr,\n minSize: minSize,\n maxSize: maxSize,\n multiple: multiple,\n maxFiles: maxFiles,\n validator: validator\n });\n var isDragReject = fileCount > 0 && !isDragAccept;\n dispatch({\n isDragAccept: isDragAccept,\n isDragReject: isDragReject,\n isDragActive: true,\n type: \"setDraggedFiles\"\n });\n\n if (onDragEnter) {\n onDragEnter(event);\n }\n }).catch(function (e) {\n return onErrCb(e);\n });\n }\n }, [getFilesFromEvent, onDragEnter, onErrCb, noDragEventsBubbling, acceptAttr, minSize, maxSize, multiple, maxFiles, validator]);\n var onDragOverCb = useCallback(function (event) {\n event.preventDefault();\n event.persist();\n stopPropagation(event);\n var hasFiles = isEvtWithFiles(event);\n\n if (hasFiles && event.dataTransfer) {\n try {\n event.dataTransfer.dropEffect = \"copy\";\n } catch (_unused) {}\n /* eslint-disable-line no-empty */\n\n }\n\n if (hasFiles && onDragOver) {\n onDragOver(event);\n }\n\n return false;\n }, [onDragOver, noDragEventsBubbling]);\n var onDragLeaveCb = useCallback(function (event) {\n event.preventDefault();\n event.persist();\n stopPropagation(event); // Only deactivate once the dropzone and all children have been left\n\n var targets = dragTargetsRef.current.filter(function (target) {\n return rootRef.current && rootRef.current.contains(target);\n }); // Make sure to remove a target present multiple times only once\n // (Firefox may fire dragenter/dragleave multiple times on the same element)\n\n var targetIdx = targets.indexOf(event.target);\n\n if (targetIdx !== -1) {\n targets.splice(targetIdx, 1);\n }\n\n dragTargetsRef.current = targets;\n\n if (targets.length > 0) {\n return;\n }\n\n dispatch({\n type: \"setDraggedFiles\",\n isDragActive: false,\n isDragAccept: false,\n isDragReject: false\n });\n\n if (isEvtWithFiles(event) && onDragLeave) {\n onDragLeave(event);\n }\n }, [rootRef, onDragLeave, noDragEventsBubbling]);\n var setFiles = useCallback(function (files, event) {\n var acceptedFiles = [];\n var fileRejections = [];\n files.forEach(function (file) {\n var _fileAccepted = fileAccepted(file, acceptAttr),\n _fileAccepted2 = _slicedToArray(_fileAccepted, 2),\n accepted = _fileAccepted2[0],\n acceptError = _fileAccepted2[1];\n\n var _fileMatchSize = fileMatchSize(file, minSize, maxSize),\n _fileMatchSize2 = _slicedToArray(_fileMatchSize, 2),\n sizeMatch = _fileMatchSize2[0],\n sizeError = _fileMatchSize2[1];\n\n var customErrors = validator ? validator(file) : null;\n\n if (accepted && sizeMatch && !customErrors) {\n acceptedFiles.push(file);\n } else {\n var errors = [acceptError, sizeError];\n\n if (customErrors) {\n errors = errors.concat(customErrors);\n }\n\n fileRejections.push({\n file: file,\n errors: errors.filter(function (e) {\n return e;\n })\n });\n }\n });\n\n if (!multiple && acceptedFiles.length > 1 || multiple && maxFiles >= 1 && acceptedFiles.length > maxFiles) {\n // Reject everything and empty accepted files\n acceptedFiles.forEach(function (file) {\n fileRejections.push({\n file: file,\n errors: [TOO_MANY_FILES_REJECTION]\n });\n });\n acceptedFiles.splice(0);\n }\n\n dispatch({\n acceptedFiles: acceptedFiles,\n fileRejections: fileRejections,\n type: \"setFiles\"\n });\n\n if (onDrop) {\n onDrop(acceptedFiles, fileRejections, event);\n }\n\n if (fileRejections.length > 0 && onDropRejected) {\n onDropRejected(fileRejections, event);\n }\n\n if (acceptedFiles.length > 0 && onDropAccepted) {\n onDropAccepted(acceptedFiles, event);\n }\n }, [dispatch, multiple, acceptAttr, minSize, maxSize, maxFiles, onDrop, onDropAccepted, onDropRejected, validator]);\n var onDropCb = useCallback(function (event) {\n event.preventDefault(); // Persist here because we need the event later after getFilesFromEvent() is done\n\n event.persist();\n stopPropagation(event);\n dragTargetsRef.current = [];\n\n if (isEvtWithFiles(event)) {\n Promise.resolve(getFilesFromEvent(event)).then(function (files) {\n if (isPropagationStopped(event) && !noDragEventsBubbling) {\n return;\n }\n\n setFiles(files, event);\n }).catch(function (e) {\n return onErrCb(e);\n });\n }\n\n dispatch({\n type: \"reset\"\n });\n }, [getFilesFromEvent, setFiles, onErrCb, noDragEventsBubbling]); // Fn for opening the file dialog programmatically\n\n var openFileDialog = useCallback(function () {\n // No point to use FS access APIs if context is not secure\n // https://developer.mozilla.org/en-US/docs/Web/Security/Secure_Contexts#feature_detection\n if (fsAccessApiWorksRef.current) {\n dispatch({\n type: \"openDialog\"\n });\n onFileDialogOpenCb(); // https://developer.mozilla.org/en-US/docs/Web/API/window/showOpenFilePicker\n\n var opts = {\n multiple: multiple,\n types: pickerTypes\n };\n window.showOpenFilePicker(opts).then(function (handles) {\n return getFilesFromEvent(handles);\n }).then(function (files) {\n setFiles(files, null);\n dispatch({\n type: \"closeDialog\"\n });\n }).catch(function (e) {\n // AbortError means the user canceled\n if (isAbort(e)) {\n onFileDialogCancelCb(e);\n dispatch({\n type: \"closeDialog\"\n });\n } else if (isSecurityError(e)) {\n fsAccessApiWorksRef.current = false; // CORS, so cannot use this API\n // Try using the input\n\n if (inputRef.current) {\n inputRef.current.value = null;\n inputRef.current.click();\n } else {\n onErrCb(new Error(\"Cannot open the file picker because the https://developer.mozilla.org/en-US/docs/Web/API/File_System_Access_API is not supported and no was provided.\"));\n }\n } else {\n onErrCb(e);\n }\n });\n return;\n }\n\n if (inputRef.current) {\n dispatch({\n type: \"openDialog\"\n });\n onFileDialogOpenCb();\n inputRef.current.value = null;\n inputRef.current.click();\n }\n }, [dispatch, onFileDialogOpenCb, onFileDialogCancelCb, useFsAccessApi, setFiles, onErrCb, pickerTypes, multiple]); // Cb to open the file dialog when SPACE/ENTER occurs on the dropzone\n\n var onKeyDownCb = useCallback(function (event) {\n // Ignore keyboard events bubbling up the DOM tree\n if (!rootRef.current || !rootRef.current.isEqualNode(event.target)) {\n return;\n }\n\n if (event.key === \" \" || event.key === \"Enter\" || event.keyCode === 32 || event.keyCode === 13) {\n event.preventDefault();\n openFileDialog();\n }\n }, [rootRef, openFileDialog]); // Update focus state for the dropzone\n\n var onFocusCb = useCallback(function () {\n dispatch({\n type: \"focus\"\n });\n }, []);\n var onBlurCb = useCallback(function () {\n dispatch({\n type: \"blur\"\n });\n }, []); // Cb to open the file dialog when click occurs on the dropzone\n\n var onClickCb = useCallback(function () {\n if (noClick) {\n return;\n } // In IE11/Edge the file-browser dialog is blocking, therefore, use setTimeout()\n // to ensure React can handle state changes\n // See: https://github.com/react-dropzone/react-dropzone/issues/450\n\n\n if (isIeOrEdge()) {\n setTimeout(openFileDialog, 0);\n } else {\n openFileDialog();\n }\n }, [noClick, openFileDialog]);\n\n var composeHandler = function composeHandler(fn) {\n return disabled ? null : fn;\n };\n\n var composeKeyboardHandler = function composeKeyboardHandler(fn) {\n return noKeyboard ? null : composeHandler(fn);\n };\n\n var composeDragHandler = function composeDragHandler(fn) {\n return noDrag ? null : composeHandler(fn);\n };\n\n var stopPropagation = function stopPropagation(event) {\n if (noDragEventsBubbling) {\n event.stopPropagation();\n }\n };\n\n var getRootProps = useMemo(function () {\n return function () {\n var _ref2 = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {},\n _ref2$refKey = _ref2.refKey,\n refKey = _ref2$refKey === void 0 ? \"ref\" : _ref2$refKey,\n role = _ref2.role,\n onKeyDown = _ref2.onKeyDown,\n onFocus = _ref2.onFocus,\n onBlur = _ref2.onBlur,\n onClick = _ref2.onClick,\n onDragEnter = _ref2.onDragEnter,\n onDragOver = _ref2.onDragOver,\n onDragLeave = _ref2.onDragLeave,\n onDrop = _ref2.onDrop,\n rest = _objectWithoutProperties(_ref2, _excluded3);\n\n return _objectSpread(_objectSpread(_defineProperty({\n onKeyDown: composeKeyboardHandler(composeEventHandlers(onKeyDown, onKeyDownCb)),\n onFocus: composeKeyboardHandler(composeEventHandlers(onFocus, onFocusCb)),\n onBlur: composeKeyboardHandler(composeEventHandlers(onBlur, onBlurCb)),\n onClick: composeHandler(composeEventHandlers(onClick, onClickCb)),\n onDragEnter: composeDragHandler(composeEventHandlers(onDragEnter, onDragEnterCb)),\n onDragOver: composeDragHandler(composeEventHandlers(onDragOver, onDragOverCb)),\n onDragLeave: composeDragHandler(composeEventHandlers(onDragLeave, onDragLeaveCb)),\n onDrop: composeDragHandler(composeEventHandlers(onDrop, onDropCb)),\n role: typeof role === \"string\" && role !== \"\" ? role : \"presentation\"\n }, refKey, rootRef), !disabled && !noKeyboard ? {\n tabIndex: 0\n } : {}), rest);\n };\n }, [rootRef, onKeyDownCb, onFocusCb, onBlurCb, onClickCb, onDragEnterCb, onDragOverCb, onDragLeaveCb, onDropCb, noKeyboard, noDrag, disabled]);\n var onInputElementClick = useCallback(function (event) {\n event.stopPropagation();\n }, []);\n var getInputProps = useMemo(function () {\n return function () {\n var _ref3 = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {},\n _ref3$refKey = _ref3.refKey,\n refKey = _ref3$refKey === void 0 ? \"ref\" : _ref3$refKey,\n onChange = _ref3.onChange,\n onClick = _ref3.onClick,\n rest = _objectWithoutProperties(_ref3, _excluded4);\n\n var inputProps = _defineProperty({\n accept: acceptAttr,\n multiple: multiple,\n type: \"file\",\n style: {\n display: \"none\"\n },\n onChange: composeHandler(composeEventHandlers(onChange, onDropCb)),\n onClick: composeHandler(composeEventHandlers(onClick, onInputElementClick)),\n tabIndex: -1\n }, refKey, inputRef);\n\n return _objectSpread(_objectSpread({}, inputProps), rest);\n };\n }, [inputRef, accept, multiple, onDropCb, disabled]);\n return _objectSpread(_objectSpread({}, state), {}, {\n isFocused: isFocused && !disabled,\n getRootProps: getRootProps,\n getInputProps: getInputProps,\n rootRef: rootRef,\n inputRef: inputRef,\n open: composeHandler(openFileDialog)\n });\n}\n/**\n * @param {DropzoneState} state\n * @param {{type: string} & DropzoneState} action\n * @returns {DropzoneState}\n */\n\nfunction reducer(state, action) {\n /* istanbul ignore next */\n switch (action.type) {\n case \"focus\":\n return _objectSpread(_objectSpread({}, state), {}, {\n isFocused: true\n });\n\n case \"blur\":\n return _objectSpread(_objectSpread({}, state), {}, {\n isFocused: 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React from 'react'\nimport { Tooltip, Typography } from '@mui/material'\nimport { observer } from 'mobx-react'\nimport { stringify } from '@jbrowse/core/util'\nimport { makeStyles } from 'tss-react/mui'\nimport { LinearComparativeViewModel } from '../model'\n\ntype LCV = LinearComparativeViewModel\n\nconst useStyles = makeStyles()({\n guide: {\n pointerEvents: 'none',\n height: '100%',\n width: 1,\n position: 'absolute',\n zIndex: 10,\n },\n sm: {\n fontSize: 10,\n },\n})\n\nconst VerticalGuide = observer(function ({\n model,\n coordX,\n}: {\n model: LCV\n coordX: number\n}) {\n const { classes } = useStyles()\n return (\n view.pxToBp(coordX))\n .map((elt, idx) => (\n \n {stringify(elt, true)}\n \n ))}\n arrow\n >\n \n \n )\n})\n\nexport default VerticalGuide\n","import React, { useRef, useEffect, useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { Popover, Typography, alpha } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport { stringify } from '@jbrowse/core/util'\nimport { Menu } from '@jbrowse/core/ui'\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\n\n// locals\nimport { LinearComparativeViewModel } from '../model'\nimport VerticalGuide from './VerticalGuide'\n\ntype LCV = LinearComparativeViewModel\ntype LGV = LinearGenomeViewModel\n\nconst useStyles = makeStyles()(theme => {\n return {\n rubberband: {\n height: '100%',\n background: alpha(theme.palette.tertiary.main, 0.7),\n position: 'absolute',\n zIndex: 10,\n textAlign: 'center',\n overflow: 'hidden',\n },\n rubberbandControl: {\n cursor: 'crosshair',\n width: '100%',\n minHeight: 8,\n },\n rubberbandText: {\n color: theme.palette.tertiary.contrastText,\n },\n popover: {\n mouseEvents: 'none',\n cursor: 'crosshair',\n },\n paper: {\n paddingLeft: theme.spacing(1),\n paddingRight: theme.spacing(1),\n },\n }\n})\n\nconst LinearComparativeRubberband = observer(function Rubberband({\n model,\n ControlComponent =

,\n}: {\n model: LCV\n ControlComponent?: React.ReactElement\n}) {\n const [startX, setStartX] = useState()\n const [currentX, setCurrentX] = useState()\n\n // clientX and clientY used for anchorPosition for menu\n // offsetX used for calculations about width of selection\n const [anchorPosition, setAnchorPosition] = useState<{\n offsetX: number\n clientX: number\n clientY: number\n }>()\n const [guideX, setGuideX] = useState()\n const controlsRef = useRef(null)\n const rubberbandRef = useRef(null)\n const { classes } = useStyles()\n const mouseDragging = startX !== undefined && anchorPosition === undefined\n\n useEffect(() => {\n function computeOffsets(offsetX: number, view: LGV) {\n if (startX === undefined) {\n return\n }\n let leftPx = startX\n let rightPx = offsetX\n // handles clicking and dragging to the left\n if (rightPx < leftPx) {\n ;[leftPx, rightPx] = [rightPx, leftPx]\n }\n const leftOffset = view.pxToBp(leftPx)\n const rightOffset = view.pxToBp(rightPx)\n\n return { leftOffset, rightOffset }\n }\n\n function globalMouseMove(event: MouseEvent) {\n if (controlsRef.current && mouseDragging) {\n const relativeX =\n event.clientX - controlsRef.current.getBoundingClientRect().left\n setCurrentX(relativeX)\n }\n }\n\n function globalMouseUp(event: MouseEvent) {\n if (startX !== undefined && controlsRef.current) {\n const { clientX, clientY } = event\n const ref = controlsRef.current\n const offsetX = clientX - ref.getBoundingClientRect().left\n // as stated above, store both clientX/Y and offsetX for different\n // purposes\n setAnchorPosition({\n offsetX,\n clientX,\n clientY,\n })\n model.views.forEach(view => {\n const args = computeOffsets(offsetX, view)\n if (args) {\n const { leftOffset, rightOffset } = args\n view.setOffsets(leftOffset, rightOffset)\n }\n })\n setGuideX(undefined)\n }\n }\n if (mouseDragging) {\n window.addEventListener('mousemove', globalMouseMove)\n window.addEventListener('mouseup', globalMouseUp)\n return () => {\n window.removeEventListener('mousemove', globalMouseMove)\n window.removeEventListener('mouseup', globalMouseUp)\n }\n }\n return () => {}\n }, [startX, mouseDragging, model])\n\n useEffect(() => {\n if (\n !mouseDragging &&\n currentX !== undefined &&\n startX !== undefined &&\n Math.abs(currentX - startX) <= 3\n ) {\n handleClose()\n }\n }, [mouseDragging, currentX, startX])\n\n function mouseDown(event: React.MouseEvent) {\n event.preventDefault()\n event.stopPropagation()\n const relativeX =\n event.clientX -\n (event.target as HTMLDivElement).getBoundingClientRect().left\n setStartX(relativeX)\n setCurrentX(relativeX)\n }\n\n function mouseMove(event: React.MouseEvent) {\n const target = event.target as HTMLDivElement\n setGuideX(event.clientX - target.getBoundingClientRect().left)\n }\n\n function mouseOut() {\n setGuideX(undefined)\n model.views.forEach(view => {\n view.setOffsets(undefined, undefined)\n })\n }\n\n function handleClose() {\n setAnchorPosition(undefined)\n setStartX(undefined)\n setCurrentX(undefined)\n }\n\n const open = Boolean(anchorPosition)\n\n function handleMenuItemClick(_: unknown, callback: () => void) {\n callback()\n handleClose()\n }\n\n if (startX === undefined) {\n return (\n <>\n {guideX !== undefined ? (\n \n ) : null}\n \n {ControlComponent}\n

\n \n )\n }\n\n const right = anchorPosition ? anchorPosition.offsetX : currentX || 0\n const left = right < startX ? right : startX\n const width = Math.abs(right - startX)\n const { views } = model\n const leftBpOffset = views.map(view => view.pxToBp(left))\n const rightBpOffset = views.map(view => view.pxToBp(left + width))\n const numOfBpSelected = views.map(view => Math.ceil(width * view.bpPerPx))\n return (\n <>\n {rubberbandRef.current ? (\n <>\n \n {leftBpOffset.map((l, idx) => (\n \n {stringify(l, true)}\n \n ))}\n \n \n {rightBpOffset.map((l, idx) => (\n \n {stringify(l, true)}\n \n ))}\n \n \n ) : null}\n \n \n {numOfBpSelected.map((n, i) => (\n /* biome-ignore lint/suspicious/noArrayIndexKey: */\n \n {`${n.toLocaleString('en-US')}bp`}\n \n ))}\n \n

\n \n {ControlComponent}\n

\n {anchorPosition ? (\n \n ) : null}\n \n )\n})\n\nexport default LinearComparativeRubberband\n","import React, { useState } from 'react'\nimport { IconButton, Typography } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport { SearchBox } from '@jbrowse/plugin-linear-genome-view'\nimport { observer } from 'mobx-react'\nimport { Menu } from '@jbrowse/core/ui'\n\n// icons\nimport MoreVertIcon from '@mui/icons-material/MoreVert'\n\n// locals\nimport { LinearComparativeViewModel } from '../model'\nimport { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons'\nimport CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton'\n\ntype LCV = LinearComparativeViewModel\n\nconst useStyles = makeStyles()(() => ({\n headerBar: {\n gridArea: '1/1/auto/span 2',\n display: 'flex',\n },\n spacer: {\n flexGrow: 1,\n },\n iconButton: {\n margin: 5,\n },\n bp: {\n display: 'flex',\n alignItems: 'center',\n marginLeft: 10,\n },\n searchContainer: {\n marginLeft: 5,\n },\n searchBox: {\n display: 'flex',\n },\n}))\n\nconst TrackSelector = observer(({ model }: { model: LCV }) => {\n return (\n model.activateTrackSelector(),\n },\n ...model.views.map((view, idx) => ({\n label: `View ${idx + 1} track selector`,\n onClick: () => view.activateTrackSelector(),\n })),\n ]}\n >\n \n \n )\n})\n\nconst Header = observer(function ({ model }: { model: LCV }) {\n const { classes } = useStyles()\n const [menuAnchorEl, setMenuAnchorEl] = useState()\n const anyShowHeaders = model.views.some(view => !view.hideHeader)\n return (\n

\n \n\n {\n setMenuAnchorEl(event.currentTarget)\n }}\n className={classes.iconButton}\n >\n \n \n {!anyShowHeaders\n ? model.views.map(view => (\n

\n \n

\n \n {Math.round(view.coarseTotalBp).toLocaleString('en-US')} bp\n \n

\n ))\n : null}\n\n

\n\n {menuAnchorEl ? (\n {\n callback()\n setMenuAnchorEl(undefined)\n }}\n menuItems={model.headerMenuItems()}\n onClose={() => {\n setMenuAnchorEl(undefined)\n }}\n />\n ) : null}\n

\n )\n})\n\nexport default Header\n","import React from 'react'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { getConf, AnyConfigurationModel } from '@jbrowse/core/configuration'\nimport { getEnv } from '@jbrowse/core/util'\nimport { ResizeHandle } from '@jbrowse/core/ui'\n\n// locals\nimport { LinearComparativeViewModel } from '../model'\nimport Rubberband from './Rubberband'\nimport Header from './Header'\n\nconst useStyles = makeStyles()(theme => ({\n container: {\n display: 'grid',\n },\n overlay: {\n zIndex: 100,\n gridArea: '1/1',\n },\n content: {\n gridArea: '1/1',\n position: 'relative',\n },\n grid: {\n display: 'grid',\n },\n relative: {\n position: 'relative',\n },\n\n // this helps keep the vertical guide inside the parent view container,\n // similar style exists in the single LGV's trackscontainer\n rubberbandContainer: {\n position: 'relative',\n overflow: 'hidden',\n },\n\n rubberbandDiv: {\n width: '100%',\n background: theme.palette.action.disabledBackground,\n height: 15,\n '&:hover': {\n background: theme.palette.action.selected,\n },\n },\n}))\n\ntype LCV = LinearComparativeViewModel\n\nconst Overlays = observer(({ model }: { model: LCV }) => {\n const { classes } = useStyles()\n return (\n <>\n {model.tracks.map(track => {\n const [display] = track.displays\n const { RenderingComponent } = display\n const trackId = getConf(track, 'trackId')\n return RenderingComponent ? (\n \n \n

\n ) : null\n })}\n \n )\n})\n\n// The comparative is in the middle of the views\nconst MiddleComparativeView = observer(({ model }: { model: LCV }) => {\n const { classes } = useStyles()\n const { views } = model\n const { pluginManager } = getEnv(model)\n const { ReactComponent } = pluginManager.getViewType(views[0]!.type)!\n\n return (\n

\n }\n />\n

\n \n

\n \n model.setMiddleComparativeHeight(model.middleComparativeHeight + n)\n }\n style={{\n height: 4,\n background: '#ccc',\n }}\n />\n \n

\n )\n})\nconst OverlayComparativeView = observer(({ model }: { model: LCV }) => {\n const { classes } = useStyles()\n const { views } = model\n const { pluginManager } = getEnv(model)\n return (\n

\n }\n />\n\n

\n {views.map(view => {\n const { ReactComponent } = pluginManager.getViewType(view.type)!\n return \n })}\n

\n \n

\n )\n})\n\nconst LinearComparativeView = observer(function (props: {\n ExtraButtons?: React.ReactNode\n model: LCV\n}) {\n const { model } = props\n\n const middle = model.tracks.some(({ displays }) =>\n displays.some((d: { configuration: AnyConfigurationModel }) =>\n getConf(d, 'middle'),\n ),\n )\n return middle ? (\n \n ) : (\n \n )\n})\n\nexport default LinearComparativeView\n","import React, { lazy } from 'react'\nimport { observer } from 'mobx-react'\n\n// locals\nimport LinearComparativeViewComponent from '../../LinearComparativeView/components/LinearComparativeView'\nimport { LinearSyntenyViewModel } from '../model'\n\nconst ImportForm = lazy(() => import('./ImportForm'))\n\ntype LSV = LinearSyntenyViewModel\n\nconst LinearSyntenyView = observer(({ model }: { model: LSV }) => {\n return !model.initialized ? (\n \n ) : (\n \n )\n})\n\nexport default LinearSyntenyView\n"],"names":["useStyles","makeStyles","guide","pointerEvents","height","width","position","zIndex","sm","fontSize","observer","model","coordX","classes","React","Tooltip","open","placement","title","views","map","view","pxToBp","elt","idx","Typography","className","key","JSON","stringify","join","arrow","style","left","background","theme","rubberband","alpha","palette","tertiary","main","textAlign","overflow","rubberbandControl","cursor","minHeight","rubberbandText","color","contrastText","popover","mouseEvents","paper","paddingLeft","spacing","paddingRight","ControlComponent","startX","setStartX","useState","currentX","setCurrentX","anchorPosition","setAnchorPosition","guideX","setGuideX","controlsRef","useRef","rubberbandRef","mouseDragging","undefined","mouseDown","event","preventDefault","stopPropagation","relativeX","clientX","target","getBoundingClientRect","mouseMove","mouseOut","forEach","setOffsets","handleClose","useEffect","globalMouseMove","current","globalMouseUp","clientY","offsetX","args","leftPx","rightPx","leftOffset","rightOffset","computeOffsets","window","addEventListener","removeEventListener","Math","abs","Boolean","VerticalGuide","ref","onMouseDown","onMouseOut","onMouseMove","right","leftBpOffset","rightBpOffset","numOfBpSelected","ceil","bpPerPx","Popover","anchorEl","anchorOrigin","vertical","horizontal","transformOrigin","keepMounted","disableRestoreFocus","l","variant","n","i","toLocaleString","Menu","anchorReference","top","onMenuItemClick","_","callback","onClose","menuItems","rubberBandMenuItems","headerBar","gridArea","display","spacer","flexGrow","iconButton","margin","bp","alignItems","marginLeft","searchContainer","searchBox","TrackSelector","CascadingMenuButton","label","onClick","activateTrackSelector","TrackSelectorIcon","menuAnchorEl","setMenuAnchorEl","anyShowHeaders","some","hideHeader","IconButton","currentTarget","MoreVertIcon","id","SearchBox","showHelp","round","coarseTotalBp","_event","headerMenuItems","container","overlay","content","grid","relative","rubberbandContainer","rubberbandDiv","action","disabledBackground","selected","Overlays","tracks","track","displays","RenderingComponent","trackId","getConf","middleComparativeHeight","MiddleComparativeView","pluginManager","getEnv","ReactComponent","getViewType","type","Header","Rubberband","ResizeHandle","onDrag","setMiddleComparativeHeight","OverlayComparativeView","props","d","ImportForm","lazy","initialized","LinearComparativeViewComponent"],"sourceRoot":""} 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'react';\nimport ButtonBase from \"../ButtonBase/index.js\";\nimport ArrowDownwardIcon from \"../internal/svg-icons/ArrowDownward.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport tableSortLabelClasses, { getTableSortLabelUtilityClass } from \"./tableSortLabelClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n direction,\n active\n } = ownerState;\n const slots = {\n root: ['root', active && 'active', `direction${capitalize(direction)}`],\n icon: ['icon', `iconDirection${capitalize(direction)}`]\n };\n return composeClasses(slots, getTableSortLabelUtilityClass, classes);\n};\nconst TableSortLabelRoot = styled(ButtonBase, {\n name: 'MuiTableSortLabel',\n slot: 'Root',\n overridesResolver: (props, styles) => 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o-=t.strm.avail_in,o&&(o>=t.w_size?(t.matches=2,t.window.set(t.strm.input.subarray(t.strm.next_in-t.w_size,t.strm.next_in),0),t.strstart=t.w_size,t.insert=t.strstart):(t.window_size-t.strstart<=o&&(t.strstart-=t.w_size,t.window.set(t.window.subarray(t.w_size,t.w_size+t.strstart),0),t.matches<2&&t.matches++,t.insert>t.strstart&&(t.insert=t.strstart)),t.window.set(t.strm.input.subarray(t.strm.next_in-o,t.strm.next_in),t.strstart),t.strstart+=o,t.insert+=o>t.w_size-t.insert?t.w_size-t.insert:o),t.block_start=t.strstart),t.high_wateri&&t.block_start>=t.w_size&&(t.block_start-=t.w_size,t.strstart-=t.w_size,t.window.set(t.window.subarray(t.w_size,t.w_size+t.strstart),0),t.matches<2&&t.matches++,i+=t.w_size,t.insert>t.strstart&&(t.insert=t.strstart)),i>t.strm.avail_in&&(i=t.strm.avail_in),i&&(Rt(t.strm,t.window,t.strstart,i),t.strstart+=i,t.insert+=i>t.w_size-t.insert?t.w_size-t.insert:i),t.high_water>3,i=t.pending_buf_size-i>65535?65535:t.pending_buf_size-i,s=i>t.w_size?t.w_size:i,r=t.strstart-t.block_start,(r>=s||(r||e===et)&&e!==J&&0===t.strm.avail_in&&r<=i)&&(n=r>i?i:r,a=e===et&&0===t.strm.avail_in&&n===r?1:0,K(t,t.block_start,n,a),t.block_start+=n,Ut(t.strm)),a?3:1)},Lt=(t,e)=>{let n,r;for(;;){if(t.lookahead=3&&(t.ins_h=Bt(t,t.ins_h,t.window[t.strstart+3-1]),n=t.prev[t.strstart&t.w_mask]=t.head[t.ins_h],t.head[t.ins_h]=t.strstart),0!==n&&t.strstart-n<=t.w_size-wt&&(t.match_length=Ot(t,n)),t.match_length>=3)if(r=W(t,t.strstart-t.match_start,t.match_length-3),t.lookahead-=t.match_length,t.match_length<=t.max_lazy_match&&t.lookahead>=3){t.match_length--;do{t.strstart++,t.ins_h=Bt(t,t.ins_h,t.window[t.strstart+3-1]),n=t.prev[t.strstart&t.w_mask]=t.head[t.ins_h],t.head[t.ins_h]=t.strstart}while(0!=--t.match_length);t.strstart++}else t.strstart+=t.match_length,t.match_length=0,t.ins_h=t.window[t.strstart],t.ins_h=Bt(t,t.ins_h,t.window[t.strstart+1]);else r=W(t,0,t.window[t.strstart]),t.lookahead--,t.strstart++;if(r&&(At(t,!1),0===t.strm.avail_out))return 1}return t.insert=t.strstart<2?t.strstart:2,e===et?(At(t,!0),0===t.strm.avail_out?3:4):t.sym_next&&(At(t,!1),0===t.strm.avail_out)?1:2},Nt=(t,e)=>{let n,r,i;for(;;){if(t.lookahead=3&&(t.ins_h=Bt(t,t.ins_h,t.window[t.strstart+3-1]),n=t.prev[t.strstart&t.w_mask]=t.head[t.ins_h],t.head[t.ins_h]=t.strstart),t.prev_length=t.match_length,t.prev_match=t.match_start,t.match_length=2,0!==n&&t.prev_length4096)&&(t.match_length=2)),t.prev_length>=3&&t.match_length<=t.prev_length){i=t.strstart+t.lookahead-3,r=W(t,t.strstart-1-t.prev_match,t.prev_length-3),t.lookahead-=t.prev_length-1,t.prev_length-=2;do{++t.strstart<=i&&(t.ins_h=Bt(t,t.ins_h,t.window[t.strstart+3-1]),n=t.prev[t.strstart&t.w_mask]=t.head[t.ins_h],t.head[t.ins_h]=t.strstart)}while(0!=--t.prev_length);if(t.match_available=0,t.match_length=2,t.strstart++,r&&(At(t,!1),0===t.strm.avail_out))return 1}else if(t.match_available){if(r=W(t,0,t.window[t.strstart-1]),r&&At(t,!1),t.strstart++,t.lookahead--,0===t.strm.avail_out)return 1}else t.match_available=1,t.strstart++,t.lookahead--}return t.match_available&&(r=W(t,0,t.window[t.strstart-1]),t.match_available=0),t.insert=t.strstart<2?t.strstart:2,e===et?(At(t,!0),0===t.strm.avail_out?3:4):t.sym_next&&(At(t,!1),0===t.strm.avail_out)?1:2};function Dt(t,e,n,r,i){this.good_length=t,this.max_lazy=e,this.nice_length=n,this.max_chain=r,this.func=i}const Ct=[new Dt(0,0,0,0,Tt),new Dt(4,4,8,4,Lt),new Dt(4,5,16,8,Lt),new Dt(4,6,32,32,Lt),new Dt(4,4,16,16,Nt),new Dt(8,16,32,32,Nt),new Dt(8,16,128,128,Nt),new Dt(8,32,128,256,Nt),new Dt(32,128,258,1024,Nt),new Dt(32,258,258,4096,Nt)];function Zt(){this.strm=null,this.status=0,this.pending_buf=null,this.pending_buf_size=0,this.pending_out=0,this.pending=0,this.wrap=0,this.gzhead=null,this.gzindex=0,this.method=_t,this.last_flush=-1,this.w_size=0,this.w_bits=0,this.w_mask=0,this.window=null,this.window_size=0,this.prev=null,this.head=null,this.ins_h=0,this.hash_size=0,this.hash_bits=0,this.hash_mask=0,this.hash_shift=0,this.block_start=0,this.match_length=0,this.prev_match=0,this.match_available=0,this.strstart=0,this.match_start=0,this.lookahead=0,this.prev_length=0,this.max_chain_length=0,this.max_lazy_match=0,this.level=0,this.strategy=0,this.good_match=0,this.nice_match=0,this.dyn_ltree=new Uint16Array(1146),this.dyn_dtree=new Uint16Array(122),this.bl_tree=new Uint16Array(78),Et(this.dyn_ltree),Et(this.dyn_dtree),Et(this.bl_tree),this.l_desc=null,this.d_desc=null,this.bl_desc=null,this.bl_count=new Uint16Array(16),this.heap=new Uint16Array(573),Et(this.heap),this.heap_len=0,this.heap_max=0,this.depth=new Uint16Array(573),Et(this.depth),this.sym_buf=0,this.lit_bufsize=0,this.sym_next=0,this.sym_end=0,this.opt_len=0,this.static_len=0,this.matches=0,this.insert=0,this.bi_buf=0,this.bi_valid=0}const Ft=t=>{if(!t)return 1;const e=t.state;return!e||e.strm!==t||e.status!==bt&&57!==e.status&&69!==e.status&&73!==e.status&&91!==e.status&&103!==e.status&&e.status!==mt&&e.status!==yt?1:0},Pt=t=>{if(Ft(t))return kt(t,st);t.total_in=t.total_out=0,t.data_type=gt;const e=t.state;return e.pending=0,e.pending_out=0,e.wrap<0&&(e.wrap=-e.wrap),e.status=2===e.wrap?57:e.wrap?bt:mt,t.adler=2===e.wrap?0:1,e.last_flush=-2,q(e),rt},Mt=t=>{const e=Pt(t);var n;return e===rt&&((n=t.state).window_size=2*n.w_size,Et(n.head),n.max_lazy_match=Ct[n.level].max_lazy,n.good_match=Ct[n.level].good_length,n.nice_match=Ct[n.level].nice_length,n.max_chain_length=Ct[n.level].max_chain,n.strstart=0,n.block_start=0,n.lookahead=0,n.insert=0,n.match_length=n.prev_length=2,n.match_available=0,n.ins_h=0),e},$t=(t,e,n,r,i,s)=>{if(!t)return st;let a=1;if(e===ht&&(e=6),r<0?(a=0,r=-r):r>15&&(a=2,r-=16),i<1||i>9||n!==_t||r<8||r>15||e<0||e>9||s<0||s>ct||8===r&&1!==a)return kt(t,st);8===r&&(r=9);const o=new Zt;return t.state=o,o.strm=t,o.status=bt,o.wrap=a,o.gzhead=null,o.w_bits=r,o.w_size=1<Ft(t)||2!==t.state.wrap?st:(t.state.gzhead=e,rt),Vt=(t,e)=>{if(Ft(t)||e>nt||e<0)return t?kt(t,st):st;const n=t.state;if(!t.output||0!==t.avail_in&&!t.input||n.status===yt&&e!==et)return kt(t,0===t.avail_out?ot:st);const r=n.last_flush;if(n.last_flush=e,0!==n.pending){if(Ut(t),0===t.avail_out)return n.last_flush=-1,rt}else if(0===t.avail_in&&vt(e)<=vt(r)&&e!==et)return kt(t,ot);if(n.status===yt&&0!==t.avail_in)return kt(t,ot);if(n.status===bt&&0===n.wrap&&(n.status=mt),n.status===bt){let e=_t+(n.w_bits-8<<4)<<8,r=-1;if(r=n.strategy>=ft||n.level<2?0:n.level<6?1:6===n.level?2:3,e|=r<<6,0!==n.strstart&&(e|=32),e+=31-e%31,It(n,e),0!==n.strstart&&(It(n,t.adler>>>16),It(n,65535&t.adler)),t.adler=1,n.status=mt,Ut(t),0!==n.pending)return n.last_flush=-1,rt}if(57===n.status)if(t.adler=0,zt(n,31),zt(n,139),zt(n,8),n.gzhead)zt(n,(n.gzhead.text?1:0)+(n.gzhead.hcrc?2:0)+(n.gzhead.extra?4:0)+(n.gzhead.name?8:0)+(n.gzhead.comment?16:0)),zt(n,255&n.gzhead.time),zt(n,n.gzhead.time>>8&255),zt(n,n.gzhead.time>>16&255),zt(n,n.gzhead.time>>24&255),zt(n,9===n.level?2:n.strategy>=ft||n.level<2?4:0),zt(n,255&n.gzhead.os),n.gzhead.extra&&n.gzhead.extra.length&&(zt(n,255&n.gzhead.extra.length),zt(n,n.gzhead.extra.length>>8&255)),n.gzhead.hcrc&&(t.adler=H(t.adler,n.pending_buf,n.pending,0)),n.gzindex=0,n.status=69;else if(zt(n,0),zt(n,0),zt(n,0),zt(n,0),zt(n,0),zt(n,9===n.level?2:n.strategy>=ft||n.level<2?4:0),zt(n,3),n.status=mt,Ut(t),0!==n.pending)return n.last_flush=-1,rt;if(69===n.status){if(n.gzhead.extra){let e=n.pending,r=(65535&n.gzhead.extra.length)-n.gzindex;for(;n.pending+r>n.pending_buf_size;){let i=n.pending_buf_size-n.pending;if(n.pending_buf.set(n.gzhead.extra.subarray(n.gzindex,n.gzindex+i),n.pending),n.pending=n.pending_buf_size,n.gzhead.hcrc&&n.pending>e&&(t.adler=H(t.adler,n.pending_buf,n.pending-e,e)),n.gzindex+=i,Ut(t),0!==n.pending)return n.last_flush=-1,rt;e=0,r-=i}let i=new Uint8Array(n.gzhead.extra);n.pending_buf.set(i.subarray(n.gzindex,n.gzindex+r),n.pending),n.pending+=r,n.gzhead.hcrc&&n.pending>e&&(t.adler=H(t.adler,n.pending_buf,n.pending-e,e)),n.gzindex=0}n.status=73}if(73===n.status){if(n.gzhead.name){let e,r=n.pending;do{if(n.pending===n.pending_buf_size){if(n.gzhead.hcrc&&n.pending>r&&(t.adler=H(t.adler,n.pending_buf,n.pending-r,r)),Ut(t),0!==n.pending)return n.last_flush=-1,rt;r=0}e=n.gzindexr&&(t.adler=H(t.adler,n.pending_buf,n.pending-r,r)),n.gzindex=0}n.status=91}if(91===n.status){if(n.gzhead.comment){let e,r=n.pending;do{if(n.pending===n.pending_buf_size){if(n.gzhead.hcrc&&n.pending>r&&(t.adler=H(t.adler,n.pending_buf,n.pending-r,r)),Ut(t),0!==n.pending)return n.last_flush=-1,rt;r=0}e=n.gzindexr&&(t.adler=H(t.adler,n.pending_buf,n.pending-r,r))}n.status=103}if(103===n.status){if(n.gzhead.hcrc){if(n.pending+2>n.pending_buf_size&&(Ut(t),0!==n.pending))return n.last_flush=-1,rt;zt(n,255&t.adler),zt(n,t.adler>>8&255),t.adler=0}if(n.status=mt,Ut(t),0!==n.pending)return n.last_flush=-1,rt}if(0!==t.avail_in||0!==n.lookahead||e!==J&&n.status!==yt){let r=0===n.level?Tt(n,e):n.strategy===ft?((t,e)=>{let n;for(;;){if(0===t.lookahead&&(St(t),0===t.lookahead)){if(e===J)return 1;break}if(t.match_length=0,n=W(t,0,t.window[t.strstart]),t.lookahead--,t.strstart++,n&&(At(t,!1),0===t.strm.avail_out))return 1}return t.insert=0,e===et?(At(t,!0),0===t.strm.avail_out?3:4):t.sym_next&&(At(t,!1),0===t.strm.avail_out)?1:2})(n,e):n.strategy===ut?((t,e)=>{let n,r,i,s;const a=t.window;for(;;){if(t.lookahead<=pt){if(St(t),t.lookahead<=pt&&e===J)return 1;if(0===t.lookahead)break}if(t.match_length=0,t.lookahead>=3&&t.strstart>0&&(i=t.strstart-1,r=a[i],r===a[++i]&&r===a[++i]&&r===a[++i])){s=t.strstart+pt;do{}while(r===a[++i]&&r===a[++i]&&r===a[++i]&&r===a[++i]&&r===a[++i]&&r===a[++i]&&r===a[++i]&&r===a[++i]&&it.lookahead&&(t.match_length=t.lookahead)}if(t.match_length>=3?(n=W(t,1,t.match_length-3),t.lookahead-=t.match_length,t.strstart+=t.match_length,t.match_length=0):(n=W(t,0,t.window[t.strstart]),t.lookahead--,t.strstart++),n&&(At(t,!1),0===t.strm.avail_out))return 1}return t.insert=0,e===et?(At(t,!0),0===t.strm.avail_out?3:4):t.sym_next&&(At(t,!1),0===t.strm.avail_out)?1:2})(n,e):Ct[n.level].func(n,e);if(3!==r&&4!==r||(n.status=yt),1===r||3===r)return 0===t.avail_out&&(n.last_flush=-1),rt;if(2===r&&(e===Q?X(n):e!==nt&&(K(n,0,0,!1),e===tt&&(Et(n.head),0===n.lookahead&&(n.strstart=0,n.block_start=0,n.insert=0))),Ut(t),0===t.avail_out))return n.last_flush=-1,rt}return e!==et?rt:n.wrap<=0?it:(2===n.wrap?(zt(n,255&t.adler),zt(n,t.adler>>8&255),zt(n,t.adler>>16&255),zt(n,t.adler>>24&255),zt(n,255&t.total_in),zt(n,t.total_in>>8&255),zt(n,t.total_in>>16&255),zt(n,t.total_in>>24&255)):(It(n,t.adler>>>16),It(n,65535&t.adler)),Ut(t),n.wrap>0&&(n.wrap=-n.wrap),0!==n.pending?rt:it)},Yt=t=>{if(Ft(t))return st;const e=t.state.status;return t.state=null,e===mt?kt(t,at):rt},qt=(t,e)=>{let n=e.length;if(Ft(t))return st;const r=t.state,i=r.wrap;if(2===i||1===i&&r.status!==bt||r.lookahead)return st;if(1===i&&(t.adler=$(t.adler,e,n,0)),r.wrap=0,n>=r.w_size){0===i&&(Et(r.head),r.strstart=0,r.block_start=0,r.insert=0);let t=new Uint8Array(r.w_size);t.set(e.subarray(n-r.w_size,n),0),e=t,n=r.w_size}const s=t.avail_in,a=t.next_in,o=t.input;for(t.avail_in=n,t.next_in=0,t.input=e,St(r);r.lookahead>=3;){let t=r.strstart,e=r.lookahead-2;do{r.ins_h=Bt(r,r.ins_h,r.window[t+3-1]),r.prev[t&r.w_mask]=r.head[r.ins_h],r.head[r.ins_h]=t,t++}while(--e);r.strstart=t,r.lookahead=2,St(r)}return r.strstart+=r.lookahead,r.block_start=r.strstart,r.insert=r.lookahead,r.lookahead=0,r.match_length=r.prev_length=2,r.match_available=0,t.next_in=a,t.input=o,t.avail_in=s,r.wrap=i,rt};const Kt=(t,e)=>Object.prototype.hasOwnProperty.call(t,e);var Gt=function(t){const e=Array.prototype.slice.call(arguments,1);for(;e.length;){const n=e.shift();if(n){if("object"!=typeof n)throw new TypeError(n+"must be non-object");for(const e in n)Kt(n,e)&&(t[e]=n[e])}}return t},Wt=t=>{let e=0;for(let n=0,r=t.length;n=252?6:t>=248?5:t>=240?4:t>=224?3:t>=192?2:1;Jt[254]=Jt[254]=1;var Qt=t=>{if("function"==typeof TextEncoder&&TextEncoder.prototype.encode)return(new TextEncoder).encode(t);let 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e=t.readInt32LE(0);if(e===Fn||e===Pn)return!1;if(e=t.readInt32BE(0),e===Fn||e===Pn)return!0;throw new Error("not a BigWig/BigBed file")}async _readChromTree(t,e){const n=!t.isBigEndian,r=[],s={};let a=t.unzoomedDataOffset;const o=t.chromTreeOffset;for(;a%4!=0;)a+=1;const h=a-o,{buffer:l}=await this.bbi.read(i.hp.alloc(h),0,h,Number(o),e),f=l,u=new DataView(f.buffer,f.byteOffset,f.length);let c=0;c+=4,c+=4;const d=u.getUint32(c,n);c+=4,c+=4,c+=8;const g=async t=>{let e=t;if(e>=l.length)throw new Error("reading beyond end of buffer");const i=u.getUint8(e);e+=2;const a=u.getUint16(e,n);if(e+=2,i)for(let t=0;t0,s)}async getFeatureStream(t,e,n,r){await this.getHeader(r);const i=this.renameRefSeqs(t);let s;const{basesPerSpan:a,scale:o}=r||{};return s=a?await this.getView(1/a,r):o?await this.getView(o,r):await this.getView(1,r),new Dn.c((t=>{s.readWigData(i,e,n,t,r).catch((e=>{t.error(e)}))}))}async getFeatures(t,e,n,r){const i=await 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NullSignal {}\n\n/**\n * aggregates a number of abort signals, will only fire the aggregated\n * abort if all of the input signals have been aborted\n */\nexport default class AggregateAbortController {\n signals = new Set()\n abortController = new AbortController()\n\n /**\n * @param {AbortSignal} [signal] optional AbortSignal to add. if falsy,\n * will be treated as a null-signal, and this abortcontroller will no\n * longer be abortable.\n */\n //@ts-ignore\n addSignal(signal: AbortSignal = new NullSignal()): void {\n if (this.signal.aborted) {\n throw new Error('cannot add a signal, already aborted!')\n }\n\n // note that a NullSignal will never fire, so if we\n // have one this thing will never actually abort\n this.signals.add(signal)\n if (signal.aborted) {\n // handle the abort immediately if it is already aborted\n // for some reason\n this.handleAborted(signal)\n } else if (typeof signal.addEventListener === 'function') {\n signal.addEventListener('abort', () => {\n this.handleAborted(signal)\n })\n }\n }\n\n handleAborted(signal: AbortSignal): void {\n this.signals.delete(signal)\n if (this.signals.size === 0) {\n this.abortController.abort()\n }\n }\n\n get signal(): AbortSignal {\n return this.abortController.signal\n }\n\n abort(): void {\n this.abortController.abort()\n }\n}\n","export default class AggregateStatusReporter {\n callbacks = new Set()\n currentMessage: unknown\n\n addCallback(callback: Function = () => {}): void {\n this.callbacks.add(callback)\n callback(this.currentMessage)\n }\n\n callback(message: unknown) {\n this.currentMessage = message\n for (const elt of this.callbacks) {\n elt(message)\n }\n }\n}\n","import AggregateAbortController from './AggregateAbortController'\nimport AggregateStatusReporter from './AggregateStatusReporter'\n\ninterface Cache {\n delete: (key: string) => void\n keys: () => Iterator\n get: (key: string) => U | undefined\n set: (key: string, value: U) => void\n has: (key: string) => boolean\n}\ntype FillCallback = (\n data: T,\n signal?: AbortSignal,\n statusCallback?: Function,\n) => Promise\n\ninterface Entry {\n aborter: AggregateAbortController\n settled: boolean\n readonly aborted: boolean\n statusReporter: AggregateStatusReporter\n promise: Promise\n}\nexport default class AbortablePromiseCache {\n /**\n * @param {object} args constructor args\n * @param {Function} args.fill fill callback, will be called with sig `fill(data, signal)`\n * @param {object} args.cache backing store to use, must implement `get(key)`, `set(key, val)`,\n * `delete(key)`, and `keys() -> iterator`\n */\n\n private cache: Cache>\n private fillCallback: FillCallback\n\n constructor({\n fill,\n cache,\n }: {\n fill: FillCallback\n cache: Cache>\n }) {\n if (typeof fill !== 'function') {\n throw new TypeError('must pass a fill function')\n }\n if (typeof cache !== 'object') {\n throw new TypeError('must pass a cache object')\n }\n if (\n typeof cache.get !== 'function' ||\n typeof cache.set !== 'function' ||\n typeof cache.delete !== 'function'\n ) {\n throw new TypeError(\n 'cache must implement get(key), set(key, val), and and delete(key)',\n )\n }\n\n this.cache = cache\n this.fillCallback = fill\n }\n\n static isAbortException(exception: Error) {\n return (\n // DOMException\n exception.name === 'AbortError' ||\n // standard-ish non-DOM abort exception\n //@ts-ignore\n exception.code === 'ERR_ABORTED' ||\n // stringified DOMException\n exception.message === 'AbortError: aborted' ||\n // stringified standard-ish exception\n exception.message === 'Error: aborted'\n )\n }\n\n evict(key: string, entry: Entry) {\n if (this.cache.get(key) === entry) {\n this.cache.delete(key)\n }\n }\n\n fill(key: string, data: T, signal?: AbortSignal, statusCallback?: Function) {\n const aborter = new AggregateAbortController()\n const statusReporter = new AggregateStatusReporter()\n statusReporter.addCallback(statusCallback)\n const newEntry: Entry = {\n aborter: aborter,\n promise: this.fillCallback(data, aborter.signal, (message: unknown) => {\n statusReporter.callback(message)\n }),\n settled: false,\n statusReporter,\n get aborted() {\n return this.aborter.signal.aborted\n },\n }\n newEntry.aborter.addSignal(signal)\n\n // remove the fill from the cache when its abortcontroller fires, if still in there\n newEntry.aborter.signal.addEventListener('abort', () => {\n if (!newEntry.settled) {\n this.evict(key, newEntry)\n }\n })\n\n // chain off the cached promise to record when it settles\n newEntry.promise\n .then(\n () => {\n newEntry.settled = true\n },\n () => {\n newEntry.settled = true\n\n // if the fill throws an error (including abort) and is still in the cache, remove it\n this.evict(key, newEntry)\n },\n )\n .catch(error => {\n // this will only be reached if there is some kind of\n // bad bug in this library\n console.error(error)\n throw error\n })\n\n this.cache.set(key, newEntry)\n }\n\n static checkSinglePromise(promise: Promise, signal?: AbortSignal) {\n // check just this signal for having been aborted, and abort the\n // promise if it was, regardless of what happened with the cached\n // response\n function checkForSingleAbort() {\n if (signal?.aborted) {\n throw Object.assign(new Error('aborted'), { code: 'ERR_ABORTED' })\n }\n }\n\n return promise.then(\n result => {\n checkForSingleAbort()\n return result\n },\n error => {\n checkForSingleAbort()\n throw error\n },\n )\n }\n\n has(key: string): boolean {\n return this.cache.has(key)\n }\n\n /**\n * Callback for getting status of the pending async\n *\n * @callback statusCallback\n * @param {any} status, current status string or message object\n */\n\n /**\n * @param {any} key cache key to use for this request\n * @param {any} data data passed as the first argument to the fill callback\n * @param {AbortSignal} [signal] optional AbortSignal object that aborts the request\n * @param {statusCallback} a callback to get the current status of a pending async operation\n */\n get(\n key: string,\n data: T,\n signal?: AbortSignal,\n statusCallback?: Function,\n ): Promise {\n if (!signal && data instanceof AbortSignal) {\n throw new TypeError(\n 'second get argument appears to be an AbortSignal, perhaps you meant to pass `null` for the fill data?',\n )\n }\n const cacheEntry = this.cache.get(key)\n\n if (cacheEntry) {\n if (cacheEntry.aborted && !cacheEntry.settled) {\n // if it's aborted but has not realized it yet, evict it and redispatch\n this.evict(key, cacheEntry)\n return this.get(key, data, signal, statusCallback)\n }\n\n if (cacheEntry.settled) {\n // too late to abort, just return it\n return cacheEntry.promise\n }\n\n // request is in-flight, add this signal to its list of signals,\n // or if there is no signal, the aborter will become non-abortable\n cacheEntry.aborter.addSignal(signal)\n cacheEntry.statusReporter.addCallback(statusCallback)\n\n return AbortablePromiseCache.checkSinglePromise(\n cacheEntry.promise,\n signal,\n )\n }\n\n // if we got here, it is not in the cache. fill.\n this.fill(key, data, signal, statusCallback)\n return AbortablePromiseCache.checkSinglePromise(\n //see https://www.typescriptlang.org/docs/handbook/2/everyday-types.html#non-null-assertion-operator-postfix-\n\n this.cache.get(key)!.promise,\n signal,\n )\n }\n\n /**\n * delete the given entry from the cache. if it exists and its fill request has\n * not yet settled, the fill will be signaled to abort.\n *\n * @param {any} key\n */\n delete(key: string) {\n const cachedEntry = this.cache.get(key)\n if (cachedEntry) {\n if (!cachedEntry.settled) {\n cachedEntry.aborter.abort()\n }\n this.cache.delete(key)\n }\n }\n\n /**\n * Clear all requests from the cache. Aborts any that have not settled.\n * @returns {number} count of entries deleted\n */\n clear() {\n // iterate without needing regenerator-runtime\n const keyIter = this.cache.keys()\n let deleteCount = 0\n for (let result = keyIter.next(); !result.done; result = keyIter.next()) {\n this.delete(result.value)\n deleteCount += 1\n }\n return deleteCount\n }\n}\n","const BigInt32 = BigInt(32)\n\nexport function getBigInt64(\n dataView: DataView,\n byteOffset: number,\n littleEndian: boolean | undefined,\n): bigint {\n const littleEndianMask = Number(!!littleEndian)\n const bigEndianMask = Number(!littleEndian)\n\n return (\n (BigInt(\n dataView.getInt32(byteOffset, littleEndian) * bigEndianMask +\n dataView.getInt32(byteOffset + 4, littleEndian) * littleEndianMask,\n ) <<\n BigInt32) |\n BigInt(\n dataView.getUint32(byteOffset, littleEndian) * littleEndianMask +\n dataView.getUint32(byteOffset + 4, littleEndian) * bigEndianMask,\n )\n )\n}\n\nexport function getBigUint64(\n dataView: DataView,\n byteOffset: number,\n littleEndian: boolean | undefined,\n): bigint {\n const a = dataView.getUint32(byteOffset, littleEndian)\n const b = dataView.getUint32(byteOffset + 4, littleEndian)\n\n const littleEndianMask = Number(!!littleEndian)\n const bigEndianMask = Number(!littleEndian)\n\n // This branch-less optimization is 77x faster than normal ternary operator.\n // and only 3% slower than native implementation\n // https://jsbench.me/p8kyhg1eqv/1\n return (\n (BigInt(a * bigEndianMask + b * littleEndianMask) << BigInt32) |\n BigInt(a * littleEndianMask + b * bigEndianMask)\n )\n}\n","import { getBigInt64, getBigUint64 } from './pure'\n\nif (!('getBigInt64' in DataView)) {\n DataView.prototype.getBigInt64 = function (byteOffset, littleEndian) {\n return getBigInt64(this, byteOffset, littleEndian)\n }\n}\n\nif (!('getBigUint64' in DataView)) {\n DataView.prototype.getBigUint64 = function (byteOffset, littleEndian) {\n return getBigUint64(this, byteOffset, littleEndian)\n }\n}\n","/**\n * Adapted from a combination of Range and _Compound in the\n * Dalliance Genome Explorer, (c) Thomas Down 2006-2010.\n */\n\nexport interface IRange {\n min: number\n max: number\n}\nexport default class Range {\n public ranges: IRange[]\n\n public constructor(arg1: IRange[]) {\n this.ranges = arg1\n }\n\n get min() {\n return this.ranges[0].min\n }\n\n get max() {\n return this.ranges.at(-1)!.max\n }\n\n public contains(pos: number) {\n for (const r of this.ranges) {\n if (r.min <= pos && r.max >= pos) {\n return true\n }\n }\n return false\n }\n\n public isContiguous(): boolean {\n return this.ranges.length > 1\n }\n\n public getRanges() {\n return this.ranges.map(r => new Range([{ min: r.min, max: r.max }]))\n }\n\n public toString(): string {\n return this.ranges.map(r => `[${r.min}-${r.max}]`).join(',')\n }\n\n public union(s1: Range) {\n const ranges = [...this.getRanges(), ...s1.getRanges()].sort((a, b) => {\n if (a.min < b.min) {\n return -1\n } else if (a.min > b.min) {\n return 1\n } else if (a.max < b.max) {\n return -1\n } else if (b.max > a.max) {\n return 1\n } else {\n return 0\n }\n })\n const oranges = [] as Range[]\n let current = ranges[0]\n\n for (const nxt of ranges) {\n if (nxt.min > current.max + 1) {\n oranges.push(current)\n current = nxt\n } else if (nxt.max > current.max) {\n current = new Range([{ min: current.min, max: nxt.max }])\n }\n }\n oranges.push(current)\n\n return oranges.length === 1 ? oranges[0] : new Range(oranges)\n }\n}\n","\n/*! pako 2.1.0 https://github.com/nodeca/pako @license (MIT AND Zlib) */\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\n/* eslint-disable space-unary-ops */\n\n/* Public constants ==========================================================*/\n/* ===========================================================================*/\n\n\n//const Z_FILTERED = 1;\n//const Z_HUFFMAN_ONLY = 2;\n//const Z_RLE = 3;\nconst Z_FIXED$1 = 4;\n//const Z_DEFAULT_STRATEGY = 0;\n\n/* Possible values of the data_type field (though see inflate()) */\nconst Z_BINARY = 0;\nconst Z_TEXT = 1;\n//const Z_ASCII = 1; // = Z_TEXT\nconst Z_UNKNOWN$1 = 2;\n\n/*============================================================================*/\n\n\nfunction zero$1(buf) { let len = buf.length; while (--len >= 0) { buf[len] = 0; } }\n\n// From zutil.h\n\nconst STORED_BLOCK = 0;\nconst STATIC_TREES = 1;\nconst DYN_TREES = 2;\n/* The three kinds of block type */\n\nconst MIN_MATCH$1 = 3;\nconst MAX_MATCH$1 = 258;\n/* The minimum and maximum match lengths */\n\n// From deflate.h\n/* ===========================================================================\n * Internal compression state.\n */\n\nconst LENGTH_CODES$1 = 29;\n/* number of length codes, not counting the special END_BLOCK code */\n\nconst LITERALS$1 = 256;\n/* number of literal bytes 0..255 */\n\nconst L_CODES$1 = LITERALS$1 + 1 + LENGTH_CODES$1;\n/* number of Literal or Length codes, including the END_BLOCK code */\n\nconst D_CODES$1 = 30;\n/* number of distance codes */\n\nconst BL_CODES$1 = 19;\n/* number of codes used to transfer the bit lengths */\n\nconst HEAP_SIZE$1 = 2 * L_CODES$1 + 1;\n/* maximum heap size */\n\nconst MAX_BITS$1 = 15;\n/* All codes must not exceed MAX_BITS bits */\n\nconst Buf_size = 16;\n/* size of bit buffer in bi_buf */\n\n\n/* ===========================================================================\n * Constants\n */\n\nconst MAX_BL_BITS = 7;\n/* Bit length codes must not exceed MAX_BL_BITS bits */\n\nconst END_BLOCK = 256;\n/* end of block literal code */\n\nconst REP_3_6 = 16;\n/* repeat previous bit length 3-6 times (2 bits of repeat count) */\n\nconst REPZ_3_10 = 17;\n/* repeat a zero length 3-10 times (3 bits of repeat count) */\n\nconst REPZ_11_138 = 18;\n/* repeat a zero length 11-138 times (7 bits of repeat count) */\n\n/* eslint-disable comma-spacing,array-bracket-spacing */\nconst extra_lbits = /* extra bits for each length code */\n new Uint8Array([0,0,0,0,0,0,0,0,1,1,1,1,2,2,2,2,3,3,3,3,4,4,4,4,5,5,5,5,0]);\n\nconst extra_dbits = /* extra bits for each distance code */\n new Uint8Array([0,0,0,0,1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,11,11,12,12,13,13]);\n\nconst extra_blbits = /* extra bits for each bit length code */\n new Uint8Array([0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,3,7]);\n\nconst bl_order =\n new Uint8Array([16,17,18,0,8,7,9,6,10,5,11,4,12,3,13,2,14,1,15]);\n/* eslint-enable comma-spacing,array-bracket-spacing */\n\n/* The lengths of the bit length codes are sent in order of decreasing\n * probability, to avoid transmitting the lengths for unused bit length codes.\n */\n\n/* ===========================================================================\n * Local data. These are initialized only once.\n */\n\n// We pre-fill arrays with 0 to avoid uninitialized gaps\n\nconst DIST_CODE_LEN = 512; /* see definition of array dist_code below */\n\n// !!!! Use flat array instead of structure, Freq = i*2, Len = i*2+1\nconst static_ltree = new Array((L_CODES$1 + 2) * 2);\nzero$1(static_ltree);\n/* The static literal tree. Since the bit lengths are imposed, there is no\n * need for the L_CODES extra codes used during heap construction. However\n * The codes 286 and 287 are needed to build a canonical tree (see _tr_init\n * below).\n */\n\nconst static_dtree = new Array(D_CODES$1 * 2);\nzero$1(static_dtree);\n/* The static distance tree. (Actually a trivial tree since all codes use\n * 5 bits.)\n */\n\nconst _dist_code = new Array(DIST_CODE_LEN);\nzero$1(_dist_code);\n/* Distance codes. The first 256 values correspond to the distances\n * 3 .. 258, the last 256 values correspond to the top 8 bits of\n * the 15 bit distances.\n */\n\nconst _length_code = new Array(MAX_MATCH$1 - MIN_MATCH$1 + 1);\nzero$1(_length_code);\n/* length code for each normalized match length (0 == MIN_MATCH) */\n\nconst base_length = new Array(LENGTH_CODES$1);\nzero$1(base_length);\n/* First normalized length for each code (0 = MIN_MATCH) */\n\nconst base_dist = new Array(D_CODES$1);\nzero$1(base_dist);\n/* First normalized distance for each code (0 = distance of 1) */\n\n\nfunction StaticTreeDesc(static_tree, extra_bits, extra_base, elems, max_length) {\n\n this.static_tree = static_tree; /* static tree or NULL */\n this.extra_bits = extra_bits; /* extra bits for each code or NULL */\n this.extra_base = extra_base; /* base index for extra_bits */\n this.elems = elems; /* max number of elements in the tree */\n this.max_length = max_length; /* max bit length for the codes */\n\n // show if `static_tree` has data or dummy - needed for monomorphic objects\n this.has_stree = static_tree && static_tree.length;\n}\n\n\nlet static_l_desc;\nlet static_d_desc;\nlet static_bl_desc;\n\n\nfunction TreeDesc(dyn_tree, stat_desc) {\n this.dyn_tree = dyn_tree; /* the dynamic tree */\n this.max_code = 0; /* largest code with non zero frequency */\n this.stat_desc = stat_desc; /* the corresponding static tree */\n}\n\n\n\nconst d_code = (dist) => {\n\n return dist < 256 ? _dist_code[dist] : _dist_code[256 + (dist >>> 7)];\n};\n\n\n/* ===========================================================================\n * Output a short LSB first on the stream.\n * IN assertion: there is enough room in pendingBuf.\n */\nconst put_short = (s, w) => {\n// put_byte(s, (uch)((w) & 0xff));\n// put_byte(s, (uch)((ush)(w) >> 8));\n s.pending_buf[s.pending++] = (w) & 0xff;\n s.pending_buf[s.pending++] = (w >>> 8) & 0xff;\n};\n\n\n/* ===========================================================================\n * Send a value on a given number of bits.\n * IN assertion: length <= 16 and value fits in length bits.\n */\nconst send_bits = (s, value, length) => {\n\n if (s.bi_valid > (Buf_size - length)) {\n s.bi_buf |= (value << s.bi_valid) & 0xffff;\n put_short(s, s.bi_buf);\n s.bi_buf = value >> (Buf_size - s.bi_valid);\n s.bi_valid += length - Buf_size;\n } else {\n s.bi_buf |= (value << s.bi_valid) & 0xffff;\n s.bi_valid += length;\n }\n};\n\n\nconst send_code = (s, c, tree) => {\n\n send_bits(s, tree[c * 2]/*.Code*/, tree[c * 2 + 1]/*.Len*/);\n};\n\n\n/* ===========================================================================\n * Reverse the first len bits of a code, using straightforward code (a faster\n * method would use a table)\n * IN assertion: 1 <= len <= 15\n */\nconst bi_reverse = (code, len) => {\n\n let res = 0;\n do {\n res |= code & 1;\n code >>>= 1;\n res <<= 1;\n } while (--len > 0);\n return res >>> 1;\n};\n\n\n/* ===========================================================================\n * Flush the bit buffer, keeping at most 7 bits in it.\n */\nconst bi_flush = (s) => {\n\n if (s.bi_valid === 16) {\n put_short(s, s.bi_buf);\n s.bi_buf = 0;\n s.bi_valid = 0;\n\n } else if (s.bi_valid >= 8) {\n s.pending_buf[s.pending++] = s.bi_buf & 0xff;\n s.bi_buf >>= 8;\n s.bi_valid -= 8;\n }\n};\n\n\n/* ===========================================================================\n * Compute the optimal bit lengths for a tree and update the total bit length\n * for the current block.\n * IN assertion: the fields freq and dad are set, heap[heap_max] and\n * above are the tree nodes sorted by increasing frequency.\n * OUT assertions: the field len is set to the optimal bit length, the\n * array bl_count contains the frequencies for each bit length.\n * The length opt_len is updated; static_len is also updated if stree is\n * not null.\n */\nconst gen_bitlen = (s, desc) => {\n// deflate_state *s;\n// tree_desc *desc; /* the tree descriptor */\n\n const tree = desc.dyn_tree;\n const max_code = desc.max_code;\n const stree = desc.stat_desc.static_tree;\n const has_stree = desc.stat_desc.has_stree;\n const extra = desc.stat_desc.extra_bits;\n const base = desc.stat_desc.extra_base;\n const max_length = desc.stat_desc.max_length;\n let h; /* heap index */\n let n, m; /* iterate over the tree elements */\n let bits; /* bit length */\n let xbits; /* extra bits */\n let f; /* frequency */\n let overflow = 0; /* number of elements with bit length too large */\n\n for (bits = 0; bits <= MAX_BITS$1; bits++) {\n s.bl_count[bits] = 0;\n }\n\n /* In a first pass, compute the optimal bit lengths (which may\n * overflow in the case of the bit length tree).\n */\n tree[s.heap[s.heap_max] * 2 + 1]/*.Len*/ = 0; /* root of the heap */\n\n for (h = s.heap_max + 1; h < HEAP_SIZE$1; h++) {\n n = s.heap[h];\n bits = tree[tree[n * 2 + 1]/*.Dad*/ * 2 + 1]/*.Len*/ + 1;\n if (bits > max_length) {\n bits = max_length;\n overflow++;\n }\n tree[n * 2 + 1]/*.Len*/ = bits;\n /* We overwrite tree[n].Dad which is no longer needed */\n\n if (n > max_code) { continue; } /* not a leaf node */\n\n s.bl_count[bits]++;\n xbits = 0;\n if (n >= base) {\n xbits = extra[n - base];\n }\n f = tree[n * 2]/*.Freq*/;\n s.opt_len += f * (bits + xbits);\n if (has_stree) {\n s.static_len += f * (stree[n * 2 + 1]/*.Len*/ + xbits);\n }\n }\n if (overflow === 0) { return; }\n\n // Tracev((stderr,\"\\nbit length overflow\\n\"));\n /* This happens for example on obj2 and pic of the Calgary corpus */\n\n /* Find the first bit length which could increase: */\n do {\n bits = max_length - 1;\n while (s.bl_count[bits] === 0) { bits--; }\n s.bl_count[bits]--; /* move one leaf down the tree */\n s.bl_count[bits + 1] += 2; /* move one overflow item as its brother */\n s.bl_count[max_length]--;\n /* The brother of the overflow item also moves one step up,\n * but this does not affect bl_count[max_length]\n */\n overflow -= 2;\n } while (overflow > 0);\n\n /* Now recompute all bit lengths, scanning in increasing frequency.\n * h is still equal to HEAP_SIZE. (It is simpler to reconstruct all\n * lengths instead of fixing only the wrong ones. This idea is taken\n * from 'ar' written by Haruhiko Okumura.)\n */\n for (bits = max_length; bits !== 0; bits--) {\n n = s.bl_count[bits];\n while (n !== 0) {\n m = s.heap[--h];\n if (m > max_code) { continue; }\n if (tree[m * 2 + 1]/*.Len*/ !== bits) {\n // Tracev((stderr,\"code %d bits %d->%d\\n\", m, tree[m].Len, bits));\n s.opt_len += (bits - tree[m * 2 + 1]/*.Len*/) * tree[m * 2]/*.Freq*/;\n tree[m * 2 + 1]/*.Len*/ = bits;\n }\n n--;\n }\n }\n};\n\n\n/* ===========================================================================\n * Generate the codes for a given tree and bit counts (which need not be\n * optimal).\n * IN assertion: the array bl_count contains the bit length statistics for\n * the given tree and the field len is set for all tree elements.\n * OUT assertion: the field code is set for all tree elements of non\n * zero code length.\n */\nconst gen_codes = (tree, max_code, bl_count) => {\n// ct_data *tree; /* the tree to decorate */\n// int max_code; /* largest code with non zero frequency */\n// ushf *bl_count; /* number of codes at each bit length */\n\n const next_code = new Array(MAX_BITS$1 + 1); /* next code value for each bit length */\n let code = 0; /* running code value */\n let bits; /* bit index */\n let n; /* code index */\n\n /* The distribution counts are first used to generate the code values\n * without bit reversal.\n */\n for (bits = 1; bits <= MAX_BITS$1; bits++) {\n code = (code + bl_count[bits - 1]) << 1;\n next_code[bits] = code;\n }\n /* Check that the bit counts in bl_count are consistent. The last code\n * must be all ones.\n */\n //Assert (code + bl_count[MAX_BITS]-1 == (1< {\n\n let n; /* iterates over tree elements */\n let bits; /* bit counter */\n let length; /* length value */\n let code; /* code value */\n let dist; /* distance index */\n const bl_count = new Array(MAX_BITS$1 + 1);\n /* number of codes at each bit length for an optimal tree */\n\n // do check in _tr_init()\n //if (static_init_done) return;\n\n /* For some embedded targets, global variables are not initialized: */\n/*#ifdef NO_INIT_GLOBAL_POINTERS\n static_l_desc.static_tree = static_ltree;\n static_l_desc.extra_bits = extra_lbits;\n static_d_desc.static_tree = static_dtree;\n static_d_desc.extra_bits = extra_dbits;\n static_bl_desc.extra_bits = extra_blbits;\n#endif*/\n\n /* Initialize the mapping length (0..255) -> length code (0..28) */\n length = 0;\n for (code = 0; code < LENGTH_CODES$1 - 1; code++) {\n base_length[code] = length;\n for (n = 0; n < (1 << extra_lbits[code]); n++) {\n _length_code[length++] = code;\n }\n }\n //Assert (length == 256, \"tr_static_init: length != 256\");\n /* Note that the length 255 (match length 258) can be represented\n * in two different ways: code 284 + 5 bits or code 285, so we\n * overwrite length_code[255] to use the best encoding:\n */\n _length_code[length - 1] = code;\n\n /* Initialize the mapping dist (0..32K) -> dist code (0..29) */\n dist = 0;\n for (code = 0; code < 16; code++) {\n base_dist[code] = dist;\n for (n = 0; n < (1 << extra_dbits[code]); n++) {\n _dist_code[dist++] = code;\n }\n }\n //Assert (dist == 256, \"tr_static_init: dist != 256\");\n dist >>= 7; /* from now on, all distances are divided by 128 */\n for (; code < D_CODES$1; code++) {\n base_dist[code] = dist << 7;\n for (n = 0; n < (1 << (extra_dbits[code] - 7)); n++) {\n _dist_code[256 + dist++] = code;\n }\n }\n //Assert (dist == 256, \"tr_static_init: 256+dist != 512\");\n\n /* Construct the codes of the static literal tree */\n for (bits = 0; bits <= MAX_BITS$1; bits++) {\n bl_count[bits] = 0;\n }\n\n n = 0;\n while (n <= 143) {\n static_ltree[n * 2 + 1]/*.Len*/ = 8;\n n++;\n bl_count[8]++;\n }\n while (n <= 255) {\n static_ltree[n * 2 + 1]/*.Len*/ = 9;\n n++;\n bl_count[9]++;\n }\n while (n <= 279) {\n static_ltree[n * 2 + 1]/*.Len*/ = 7;\n n++;\n bl_count[7]++;\n }\n while (n <= 287) {\n static_ltree[n * 2 + 1]/*.Len*/ = 8;\n n++;\n bl_count[8]++;\n }\n /* Codes 286 and 287 do not exist, but we must include them in the\n * tree construction to get a canonical Huffman tree (longest code\n * all ones)\n */\n gen_codes(static_ltree, L_CODES$1 + 1, bl_count);\n\n /* The static distance tree is trivial: */\n for (n = 0; n < D_CODES$1; n++) {\n static_dtree[n * 2 + 1]/*.Len*/ = 5;\n static_dtree[n * 2]/*.Code*/ = bi_reverse(n, 5);\n }\n\n // Now data ready and we can init static trees\n static_l_desc = new StaticTreeDesc(static_ltree, extra_lbits, LITERALS$1 + 1, L_CODES$1, MAX_BITS$1);\n static_d_desc = new StaticTreeDesc(static_dtree, extra_dbits, 0, D_CODES$1, MAX_BITS$1);\n static_bl_desc = new StaticTreeDesc(new Array(0), extra_blbits, 0, BL_CODES$1, MAX_BL_BITS);\n\n //static_init_done = true;\n};\n\n\n/* ===========================================================================\n * Initialize a new block.\n */\nconst init_block = (s) => {\n\n let n; /* iterates over tree elements */\n\n /* Initialize the trees. */\n for (n = 0; n < L_CODES$1; n++) { s.dyn_ltree[n * 2]/*.Freq*/ = 0; }\n for (n = 0; n < D_CODES$1; n++) { s.dyn_dtree[n * 2]/*.Freq*/ = 0; }\n for (n = 0; n < BL_CODES$1; n++) { s.bl_tree[n * 2]/*.Freq*/ = 0; }\n\n s.dyn_ltree[END_BLOCK * 2]/*.Freq*/ = 1;\n s.opt_len = s.static_len = 0;\n s.sym_next = s.matches = 0;\n};\n\n\n/* ===========================================================================\n * Flush the bit buffer and align the output on a byte boundary\n */\nconst bi_windup = (s) =>\n{\n if (s.bi_valid > 8) {\n put_short(s, s.bi_buf);\n } else if (s.bi_valid > 0) {\n //put_byte(s, (Byte)s->bi_buf);\n s.pending_buf[s.pending++] = s.bi_buf;\n }\n s.bi_buf = 0;\n s.bi_valid = 0;\n};\n\n/* ===========================================================================\n * Compares to subtrees, using the tree depth as tie breaker when\n * the subtrees have equal frequency. This minimizes the worst case length.\n */\nconst smaller = (tree, n, m, depth) => {\n\n const _n2 = n * 2;\n const _m2 = m * 2;\n return (tree[_n2]/*.Freq*/ < tree[_m2]/*.Freq*/ ||\n (tree[_n2]/*.Freq*/ === tree[_m2]/*.Freq*/ && depth[n] <= depth[m]));\n};\n\n/* ===========================================================================\n * Restore the heap property by moving down the tree starting at node k,\n * exchanging a node with the smallest of its two sons if necessary, stopping\n * when the heap property is re-established (each father smaller than its\n * two sons).\n */\nconst pqdownheap = (s, tree, k) => {\n// deflate_state *s;\n// ct_data *tree; /* the tree to restore */\n// int k; /* node to move down */\n\n const v = s.heap[k];\n let j = k << 1; /* left son of k */\n while (j <= s.heap_len) {\n /* Set j to the smallest of the two sons: */\n if (j < s.heap_len &&\n smaller(tree, s.heap[j + 1], s.heap[j], s.depth)) {\n j++;\n }\n /* Exit if v is smaller than both sons */\n if (smaller(tree, v, s.heap[j], s.depth)) { break; }\n\n /* Exchange v with the smallest son */\n s.heap[k] = s.heap[j];\n k = j;\n\n /* And continue down the tree, setting j to the left son of k */\n j <<= 1;\n }\n s.heap[k] = v;\n};\n\n\n// inlined manually\n// const SMALLEST = 1;\n\n/* ===========================================================================\n * Send the block data compressed using the given Huffman trees\n */\nconst compress_block = (s, ltree, dtree) => {\n// deflate_state *s;\n// const ct_data *ltree; /* literal tree */\n// const ct_data *dtree; /* distance tree */\n\n let dist; /* distance of matched string */\n let lc; /* match length or unmatched char (if dist == 0) */\n let sx = 0; /* running index in sym_buf */\n let code; /* the code to send */\n let extra; /* number of extra bits to send */\n\n if (s.sym_next !== 0) {\n do {\n dist = s.pending_buf[s.sym_buf + sx++] & 0xff;\n dist += (s.pending_buf[s.sym_buf + sx++] & 0xff) << 8;\n lc = s.pending_buf[s.sym_buf + sx++];\n if (dist === 0) {\n send_code(s, lc, ltree); /* send a literal byte */\n //Tracecv(isgraph(lc), (stderr,\" '%c' \", lc));\n } else {\n /* Here, lc is the match length - MIN_MATCH */\n code = _length_code[lc];\n send_code(s, code + LITERALS$1 + 1, ltree); /* send the length code */\n extra = extra_lbits[code];\n if (extra !== 0) {\n lc -= base_length[code];\n send_bits(s, lc, extra); /* send the extra length bits */\n }\n dist--; /* dist is now the match distance - 1 */\n code = d_code(dist);\n //Assert (code < D_CODES, \"bad d_code\");\n\n send_code(s, code, dtree); /* send the distance code */\n extra = extra_dbits[code];\n if (extra !== 0) {\n dist -= base_dist[code];\n send_bits(s, dist, extra); /* send the extra distance bits */\n }\n } /* literal or match pair ? */\n\n /* Check that the overlay between pending_buf and sym_buf is ok: */\n //Assert(s->pending < s->lit_bufsize + sx, \"pendingBuf overflow\");\n\n } while (sx < s.sym_next);\n }\n\n send_code(s, END_BLOCK, ltree);\n};\n\n\n/* ===========================================================================\n * Construct one Huffman tree and assigns the code bit strings and lengths.\n * Update the total bit length for the current block.\n * IN assertion: the field freq is set for all tree elements.\n * OUT assertions: the fields len and code are set to the optimal bit length\n * and corresponding code. The length opt_len is updated; static_len is\n * also updated if stree is not null. The field max_code is set.\n */\nconst build_tree = (s, desc) => {\n// deflate_state *s;\n// tree_desc *desc; /* the tree descriptor */\n\n const tree = desc.dyn_tree;\n const stree = desc.stat_desc.static_tree;\n const has_stree = desc.stat_desc.has_stree;\n const elems = desc.stat_desc.elems;\n let n, m; /* iterate over heap elements */\n let max_code = -1; /* largest code with non zero frequency */\n let node; /* new node being created */\n\n /* Construct the initial heap, with least frequent element in\n * heap[SMALLEST]. The sons of heap[n] are heap[2*n] and heap[2*n+1].\n * heap[0] is not used.\n */\n s.heap_len = 0;\n s.heap_max = HEAP_SIZE$1;\n\n for (n = 0; n < elems; n++) {\n if (tree[n * 2]/*.Freq*/ !== 0) {\n s.heap[++s.heap_len] = max_code = n;\n s.depth[n] = 0;\n\n } else {\n tree[n * 2 + 1]/*.Len*/ = 0;\n }\n }\n\n /* The pkzip format requires that at least one distance code exists,\n * and that at least one bit should be sent even if there is only one\n * possible code. So to avoid special checks later on we force at least\n * two codes of non zero frequency.\n */\n while (s.heap_len < 2) {\n node = s.heap[++s.heap_len] = (max_code < 2 ? ++max_code : 0);\n tree[node * 2]/*.Freq*/ = 1;\n s.depth[node] = 0;\n s.opt_len--;\n\n if (has_stree) {\n s.static_len -= stree[node * 2 + 1]/*.Len*/;\n }\n /* node is 0 or 1 so it does not have extra bits */\n }\n desc.max_code = max_code;\n\n /* The elements heap[heap_len/2+1 .. heap_len] are leaves of the tree,\n * establish sub-heaps of increasing lengths:\n */\n for (n = (s.heap_len >> 1/*int /2*/); n >= 1; n--) { pqdownheap(s, tree, n); }\n\n /* Construct the Huffman tree by repeatedly combining the least two\n * frequent nodes.\n */\n node = elems; /* next internal node of the tree */\n do {\n //pqremove(s, tree, n); /* n = node of least frequency */\n /*** pqremove ***/\n n = s.heap[1/*SMALLEST*/];\n s.heap[1/*SMALLEST*/] = s.heap[s.heap_len--];\n pqdownheap(s, tree, 1/*SMALLEST*/);\n /***/\n\n m = s.heap[1/*SMALLEST*/]; /* m = node of next least frequency */\n\n s.heap[--s.heap_max] = n; /* keep the nodes sorted by frequency */\n s.heap[--s.heap_max] = m;\n\n /* Create a new node father of n and m */\n tree[node * 2]/*.Freq*/ = tree[n * 2]/*.Freq*/ + tree[m * 2]/*.Freq*/;\n s.depth[node] = (s.depth[n] >= s.depth[m] ? s.depth[n] : s.depth[m]) + 1;\n tree[n * 2 + 1]/*.Dad*/ = tree[m * 2 + 1]/*.Dad*/ = node;\n\n /* and insert the new node in the heap */\n s.heap[1/*SMALLEST*/] = node++;\n pqdownheap(s, tree, 1/*SMALLEST*/);\n\n } while (s.heap_len >= 2);\n\n s.heap[--s.heap_max] = s.heap[1/*SMALLEST*/];\n\n /* At this point, the fields freq and dad are set. We can now\n * generate the bit lengths.\n */\n gen_bitlen(s, desc);\n\n /* The field len is now set, we can generate the bit codes */\n gen_codes(tree, max_code, s.bl_count);\n};\n\n\n/* ===========================================================================\n * Scan a literal or distance tree to determine the frequencies of the codes\n * in the bit length tree.\n */\nconst scan_tree = (s, tree, max_code) => {\n// deflate_state *s;\n// ct_data *tree; /* the tree to be scanned */\n// int max_code; /* and its largest code of non zero frequency */\n\n let n; /* iterates over all tree elements */\n let prevlen = -1; /* last emitted length */\n let curlen; /* length of current code */\n\n let nextlen = tree[0 * 2 + 1]/*.Len*/; /* length of next code */\n\n let count = 0; /* repeat count of the current code */\n let max_count = 7; /* max repeat count */\n let min_count = 4; /* min repeat count */\n\n if (nextlen === 0) {\n max_count = 138;\n min_count = 3;\n }\n tree[(max_code + 1) * 2 + 1]/*.Len*/ = 0xffff; /* guard */\n\n for (n = 0; n <= max_code; n++) {\n curlen = nextlen;\n nextlen = tree[(n + 1) * 2 + 1]/*.Len*/;\n\n if (++count < max_count && curlen === nextlen) {\n continue;\n\n } else if (count < min_count) {\n s.bl_tree[curlen * 2]/*.Freq*/ += count;\n\n } else if (curlen !== 0) {\n\n if (curlen !== prevlen) { s.bl_tree[curlen * 2]/*.Freq*/++; }\n s.bl_tree[REP_3_6 * 2]/*.Freq*/++;\n\n } else if (count <= 10) {\n s.bl_tree[REPZ_3_10 * 2]/*.Freq*/++;\n\n } else {\n s.bl_tree[REPZ_11_138 * 2]/*.Freq*/++;\n }\n\n count = 0;\n prevlen = curlen;\n\n if (nextlen === 0) {\n max_count = 138;\n min_count = 3;\n\n } else if (curlen === nextlen) {\n max_count = 6;\n min_count = 3;\n\n } else {\n max_count = 7;\n min_count = 4;\n }\n }\n};\n\n\n/* ===========================================================================\n * Send a literal or distance tree in compressed form, using the codes in\n * bl_tree.\n */\nconst send_tree = (s, tree, max_code) => {\n// deflate_state *s;\n// ct_data *tree; /* the tree to be scanned */\n// int max_code; /* and its largest code of non zero frequency */\n\n let n; /* iterates over all tree elements */\n let prevlen = -1; /* last emitted length */\n let curlen; /* length of current code */\n\n let nextlen = tree[0 * 2 + 1]/*.Len*/; /* length of next code */\n\n let count = 0; /* repeat count of the current code */\n let max_count = 7; /* max repeat count */\n let min_count = 4; /* min repeat count */\n\n /* tree[max_code+1].Len = -1; */ /* guard already set */\n if (nextlen === 0) {\n max_count = 138;\n min_count = 3;\n }\n\n for (n = 0; n <= max_code; n++) {\n curlen = nextlen;\n nextlen = tree[(n + 1) * 2 + 1]/*.Len*/;\n\n if (++count < max_count && curlen === nextlen) {\n continue;\n\n } else if (count < min_count) {\n do { send_code(s, curlen, s.bl_tree); } while (--count !== 0);\n\n } else if (curlen !== 0) {\n if (curlen !== prevlen) {\n send_code(s, curlen, s.bl_tree);\n count--;\n }\n //Assert(count >= 3 && count <= 6, \" 3_6?\");\n send_code(s, REP_3_6, s.bl_tree);\n send_bits(s, count - 3, 2);\n\n } else if (count <= 10) {\n send_code(s, REPZ_3_10, s.bl_tree);\n send_bits(s, count - 3, 3);\n\n } else {\n send_code(s, REPZ_11_138, s.bl_tree);\n send_bits(s, count - 11, 7);\n }\n\n count = 0;\n prevlen = curlen;\n if (nextlen === 0) {\n max_count = 138;\n min_count = 3;\n\n } else if (curlen === nextlen) {\n max_count = 6;\n min_count = 3;\n\n } else {\n max_count = 7;\n min_count = 4;\n }\n }\n};\n\n\n/* ===========================================================================\n * Construct the Huffman tree for the bit lengths and return the index in\n * bl_order of the last bit length code to send.\n */\nconst build_bl_tree = (s) => {\n\n let max_blindex; /* index of last bit length code of non zero freq */\n\n /* Determine the bit length frequencies for literal and distance trees */\n scan_tree(s, s.dyn_ltree, s.l_desc.max_code);\n scan_tree(s, s.dyn_dtree, s.d_desc.max_code);\n\n /* Build the bit length tree: */\n build_tree(s, s.bl_desc);\n /* opt_len now includes the length of the tree representations, except\n * the lengths of the bit lengths codes and the 5+5+4 bits for the counts.\n */\n\n /* Determine the number of bit length codes to send. The pkzip format\n * requires that at least 4 bit length codes be sent. (appnote.txt says\n * 3 but the actual value used is 4.)\n */\n for (max_blindex = BL_CODES$1 - 1; max_blindex >= 3; max_blindex--) {\n if (s.bl_tree[bl_order[max_blindex] * 2 + 1]/*.Len*/ !== 0) {\n break;\n }\n }\n /* Update opt_len to include the bit length tree and counts */\n s.opt_len += 3 * (max_blindex + 1) + 5 + 5 + 4;\n //Tracev((stderr, \"\\ndyn trees: dyn %ld, stat %ld\",\n // s->opt_len, s->static_len));\n\n return max_blindex;\n};\n\n\n/* ===========================================================================\n * Send the header for a block using dynamic Huffman trees: the counts, the\n * lengths of the bit length codes, the literal tree and the distance tree.\n * IN assertion: lcodes >= 257, dcodes >= 1, blcodes >= 4.\n */\nconst send_all_trees = (s, lcodes, dcodes, blcodes) => {\n// deflate_state *s;\n// int lcodes, dcodes, blcodes; /* number of codes for each tree */\n\n let rank; /* index in bl_order */\n\n //Assert (lcodes >= 257 && dcodes >= 1 && blcodes >= 4, \"not enough codes\");\n //Assert (lcodes <= L_CODES && dcodes <= D_CODES && blcodes <= BL_CODES,\n // \"too many codes\");\n //Tracev((stderr, \"\\nbl counts: \"));\n send_bits(s, lcodes - 257, 5); /* not +255 as stated in appnote.txt */\n send_bits(s, dcodes - 1, 5);\n send_bits(s, blcodes - 4, 4); /* not -3 as stated in appnote.txt */\n for (rank = 0; rank < blcodes; rank++) {\n //Tracev((stderr, \"\\nbl code %2d \", bl_order[rank]));\n send_bits(s, s.bl_tree[bl_order[rank] * 2 + 1]/*.Len*/, 3);\n }\n //Tracev((stderr, \"\\nbl tree: sent %ld\", s->bits_sent));\n\n send_tree(s, s.dyn_ltree, lcodes - 1); /* literal tree */\n //Tracev((stderr, \"\\nlit tree: sent %ld\", s->bits_sent));\n\n send_tree(s, s.dyn_dtree, dcodes - 1); /* distance tree */\n //Tracev((stderr, \"\\ndist tree: sent %ld\", s->bits_sent));\n};\n\n\n/* ===========================================================================\n * Check if the data type is TEXT or BINARY, using the following algorithm:\n * - TEXT if the two conditions below are satisfied:\n * a) There are no non-portable control characters belonging to the\n * \"block list\" (0..6, 14..25, 28..31).\n * b) There is at least one printable character belonging to the\n * \"allow list\" (9 {TAB}, 10 {LF}, 13 {CR}, 32..255).\n * - BINARY otherwise.\n * - The following partially-portable control characters form a\n * \"gray list\" that is ignored in this detection algorithm:\n * (7 {BEL}, 8 {BS}, 11 {VT}, 12 {FF}, 26 {SUB}, 27 {ESC}).\n * IN assertion: the fields Freq of dyn_ltree are set.\n */\nconst detect_data_type = (s) => {\n /* block_mask is the bit mask of block-listed bytes\n * set bits 0..6, 14..25, and 28..31\n * 0xf3ffc07f = binary 11110011111111111100000001111111\n */\n let block_mask = 0xf3ffc07f;\n let n;\n\n /* Check for non-textual (\"block-listed\") bytes. */\n for (n = 0; n <= 31; n++, block_mask >>>= 1) {\n if ((block_mask & 1) && (s.dyn_ltree[n * 2]/*.Freq*/ !== 0)) {\n return Z_BINARY;\n }\n }\n\n /* Check for textual (\"allow-listed\") bytes. */\n if (s.dyn_ltree[9 * 2]/*.Freq*/ !== 0 || s.dyn_ltree[10 * 2]/*.Freq*/ !== 0 ||\n s.dyn_ltree[13 * 2]/*.Freq*/ !== 0) {\n return Z_TEXT;\n }\n for (n = 32; n < LITERALS$1; n++) {\n if (s.dyn_ltree[n * 2]/*.Freq*/ !== 0) {\n return Z_TEXT;\n }\n }\n\n /* There are no \"block-listed\" or \"allow-listed\" bytes:\n * this stream either is empty or has tolerated (\"gray-listed\") bytes only.\n */\n return Z_BINARY;\n};\n\n\nlet static_init_done = false;\n\n/* ===========================================================================\n * Initialize the tree data structures for a new zlib stream.\n */\nconst _tr_init$1 = (s) =>\n{\n\n if (!static_init_done) {\n tr_static_init();\n static_init_done = true;\n }\n\n s.l_desc = new TreeDesc(s.dyn_ltree, static_l_desc);\n s.d_desc = new TreeDesc(s.dyn_dtree, static_d_desc);\n s.bl_desc = new TreeDesc(s.bl_tree, static_bl_desc);\n\n s.bi_buf = 0;\n s.bi_valid = 0;\n\n /* Initialize the first block of the first file: */\n init_block(s);\n};\n\n\n/* ===========================================================================\n * Send a stored block\n */\nconst _tr_stored_block$1 = (s, buf, stored_len, last) => {\n//DeflateState *s;\n//charf *buf; /* input block */\n//ulg stored_len; /* length of input block */\n//int last; /* one if this is the last block for a file */\n\n send_bits(s, (STORED_BLOCK << 1) + (last ? 1 : 0), 3); /* send block type */\n bi_windup(s); /* align on byte boundary */\n put_short(s, stored_len);\n put_short(s, ~stored_len);\n if (stored_len) {\n s.pending_buf.set(s.window.subarray(buf, buf + stored_len), s.pending);\n }\n s.pending += stored_len;\n};\n\n\n/* ===========================================================================\n * Send one empty static block to give enough lookahead for inflate.\n * This takes 10 bits, of which 7 may remain in the bit buffer.\n */\nconst _tr_align$1 = (s) => {\n send_bits(s, STATIC_TREES << 1, 3);\n send_code(s, END_BLOCK, static_ltree);\n bi_flush(s);\n};\n\n\n/* ===========================================================================\n * Determine the best encoding for the current block: dynamic trees, static\n * trees or store, and write out the encoded block.\n */\nconst _tr_flush_block$1 = (s, buf, stored_len, last) => {\n//DeflateState *s;\n//charf *buf; /* input block, or NULL if too old */\n//ulg stored_len; /* length of input block */\n//int last; /* one if this is the last block for a file */\n\n let opt_lenb, static_lenb; /* opt_len and static_len in bytes */\n let max_blindex = 0; /* index of last bit length code of non zero freq */\n\n /* Build the Huffman trees unless a stored block is forced */\n if (s.level > 0) {\n\n /* Check if the file is binary or text */\n if (s.strm.data_type === Z_UNKNOWN$1) {\n s.strm.data_type = detect_data_type(s);\n }\n\n /* Construct the literal and distance trees */\n build_tree(s, s.l_desc);\n // Tracev((stderr, \"\\nlit data: dyn %ld, stat %ld\", s->opt_len,\n // s->static_len));\n\n build_tree(s, s.d_desc);\n // Tracev((stderr, \"\\ndist data: dyn %ld, stat %ld\", s->opt_len,\n // s->static_len));\n /* At this point, opt_len and static_len are the total bit lengths of\n * the compressed block data, excluding the tree representations.\n */\n\n /* Build the bit length tree for the above two trees, and get the index\n * in bl_order of the last bit length code to send.\n */\n max_blindex = build_bl_tree(s);\n\n /* Determine the best encoding. Compute the block lengths in bytes. */\n opt_lenb = (s.opt_len + 3 + 7) >>> 3;\n static_lenb = (s.static_len + 3 + 7) >>> 3;\n\n // Tracev((stderr, \"\\nopt %lu(%lu) stat %lu(%lu) stored %lu lit %u \",\n // opt_lenb, s->opt_len, static_lenb, s->static_len, stored_len,\n // s->sym_next / 3));\n\n if (static_lenb <= opt_lenb) { opt_lenb = static_lenb; }\n\n } else {\n // Assert(buf != (char*)0, \"lost buf\");\n opt_lenb = static_lenb = stored_len + 5; /* force a stored block */\n }\n\n if ((stored_len + 4 <= opt_lenb) && (buf !== -1)) {\n /* 4: two words for the lengths */\n\n /* The test buf != NULL is only necessary if LIT_BUFSIZE > WSIZE.\n * Otherwise we can't have processed more than WSIZE input bytes since\n * the last block flush, because compression would have been\n * successful. If LIT_BUFSIZE <= WSIZE, it is never too late to\n * transform a block into a stored block.\n */\n _tr_stored_block$1(s, buf, stored_len, last);\n\n } else if (s.strategy === Z_FIXED$1 || static_lenb === opt_lenb) {\n\n send_bits(s, (STATIC_TREES << 1) + (last ? 1 : 0), 3);\n compress_block(s, static_ltree, static_dtree);\n\n } else {\n send_bits(s, (DYN_TREES << 1) + (last ? 1 : 0), 3);\n send_all_trees(s, s.l_desc.max_code + 1, s.d_desc.max_code + 1, max_blindex + 1);\n compress_block(s, s.dyn_ltree, s.dyn_dtree);\n }\n // Assert (s->compressed_len == s->bits_sent, \"bad compressed size\");\n /* The above check is made mod 2^32, for files larger than 512 MB\n * and uLong implemented on 32 bits.\n */\n init_block(s);\n\n if (last) {\n bi_windup(s);\n }\n // Tracev((stderr,\"\\ncomprlen %lu(%lu) \", s->compressed_len>>3,\n // s->compressed_len-7*last));\n};\n\n/* ===========================================================================\n * Save the match info and tally the frequency counts. Return true if\n * the current block must be flushed.\n */\nconst _tr_tally$1 = (s, dist, lc) => {\n// deflate_state *s;\n// unsigned dist; /* distance of matched string */\n// unsigned lc; /* match length-MIN_MATCH or unmatched char (if dist==0) */\n\n s.pending_buf[s.sym_buf + s.sym_next++] = dist;\n s.pending_buf[s.sym_buf + s.sym_next++] = dist >> 8;\n s.pending_buf[s.sym_buf + s.sym_next++] = lc;\n if (dist === 0) {\n /* lc is the unmatched char */\n s.dyn_ltree[lc * 2]/*.Freq*/++;\n } else {\n s.matches++;\n /* Here, lc is the match length - MIN_MATCH */\n dist--; /* dist = match distance - 1 */\n //Assert((ush)dist < (ush)MAX_DIST(s) &&\n // (ush)lc <= (ush)(MAX_MATCH-MIN_MATCH) &&\n // (ush)d_code(dist) < (ush)D_CODES, \"_tr_tally: bad match\");\n\n s.dyn_ltree[(_length_code[lc] + LITERALS$1 + 1) * 2]/*.Freq*/++;\n s.dyn_dtree[d_code(dist) * 2]/*.Freq*/++;\n }\n\n return (s.sym_next === s.sym_end);\n};\n\nvar _tr_init_1 = _tr_init$1;\nvar _tr_stored_block_1 = _tr_stored_block$1;\nvar _tr_flush_block_1 = _tr_flush_block$1;\nvar _tr_tally_1 = _tr_tally$1;\nvar _tr_align_1 = _tr_align$1;\n\nvar trees = {\n\t_tr_init: _tr_init_1,\n\t_tr_stored_block: _tr_stored_block_1,\n\t_tr_flush_block: _tr_flush_block_1,\n\t_tr_tally: _tr_tally_1,\n\t_tr_align: _tr_align_1\n};\n\n// Note: adler32 takes 12% for level 0 and 2% for level 6.\n// It isn't worth it to make additional optimizations as in original.\n// Small size is preferable.\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\nconst adler32 = (adler, buf, len, pos) => {\n let s1 = (adler & 0xffff) |0,\n s2 = ((adler >>> 16) & 0xffff) |0,\n n = 0;\n\n while (len !== 0) {\n // Set limit ~ twice less than 5552, to keep\n // s2 in 31-bits, because we force signed ints.\n // in other case %= will fail.\n n = len > 2000 ? 2000 : len;\n len -= n;\n\n do {\n s1 = (s1 + buf[pos++]) |0;\n s2 = (s2 + s1) |0;\n } while (--n);\n\n s1 %= 65521;\n s2 %= 65521;\n }\n\n return (s1 | (s2 << 16)) |0;\n};\n\n\nvar adler32_1 = adler32;\n\n// Note: we can't get significant speed boost here.\n// So write code to minimize size - no pregenerated tables\n// and array tools dependencies.\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\n// Use ordinary array, since untyped makes no boost here\nconst makeTable = () => {\n let c, table = [];\n\n for (var n = 0; n < 256; n++) {\n c = n;\n for (var k = 0; k < 8; k++) {\n c = ((c & 1) ? (0xEDB88320 ^ (c >>> 1)) : (c >>> 1));\n }\n table[n] = c;\n }\n\n return table;\n};\n\n// Create table on load. Just 255 signed longs. Not a problem.\nconst crcTable = new Uint32Array(makeTable());\n\n\nconst crc32 = (crc, buf, len, pos) => {\n const t = crcTable;\n const end = pos + len;\n\n crc ^= -1;\n\n for (let i = pos; i < end; i++) {\n crc = (crc >>> 8) ^ t[(crc ^ buf[i]) & 0xFF];\n }\n\n return (crc ^ (-1)); // >>> 0;\n};\n\n\nvar crc32_1 = crc32;\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\nvar messages = {\n 2: 'need dictionary', /* Z_NEED_DICT 2 */\n 1: 'stream end', /* Z_STREAM_END 1 */\n 0: '', /* Z_OK 0 */\n '-1': 'file error', /* Z_ERRNO (-1) */\n '-2': 'stream error', /* Z_STREAM_ERROR (-2) */\n '-3': 'data error', /* Z_DATA_ERROR (-3) */\n '-4': 'insufficient memory', /* Z_MEM_ERROR (-4) */\n '-5': 'buffer error', /* Z_BUF_ERROR (-5) */\n '-6': 'incompatible version' /* Z_VERSION_ERROR (-6) */\n};\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\nvar constants$2 = {\n\n /* Allowed flush values; see deflate() and inflate() below for details */\n Z_NO_FLUSH: 0,\n Z_PARTIAL_FLUSH: 1,\n Z_SYNC_FLUSH: 2,\n Z_FULL_FLUSH: 3,\n Z_FINISH: 4,\n Z_BLOCK: 5,\n Z_TREES: 6,\n\n /* Return codes for the compression/decompression functions. Negative values\n * are errors, positive values are used for special but normal events.\n */\n Z_OK: 0,\n Z_STREAM_END: 1,\n Z_NEED_DICT: 2,\n Z_ERRNO: -1,\n Z_STREAM_ERROR: -2,\n Z_DATA_ERROR: -3,\n Z_MEM_ERROR: -4,\n Z_BUF_ERROR: -5,\n //Z_VERSION_ERROR: -6,\n\n /* compression levels */\n Z_NO_COMPRESSION: 0,\n Z_BEST_SPEED: 1,\n Z_BEST_COMPRESSION: 9,\n Z_DEFAULT_COMPRESSION: -1,\n\n\n Z_FILTERED: 1,\n Z_HUFFMAN_ONLY: 2,\n Z_RLE: 3,\n Z_FIXED: 4,\n Z_DEFAULT_STRATEGY: 0,\n\n /* Possible values of the data_type field (though see inflate()) */\n Z_BINARY: 0,\n Z_TEXT: 1,\n //Z_ASCII: 1, // = Z_TEXT (deprecated)\n Z_UNKNOWN: 2,\n\n /* The deflate compression method */\n Z_DEFLATED: 8\n //Z_NULL: null // Use -1 or null inline, depending on var type\n};\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\nconst { _tr_init, _tr_stored_block, _tr_flush_block, _tr_tally, _tr_align } = trees;\n\n\n\n\n/* Public constants ==========================================================*/\n/* ===========================================================================*/\n\nconst {\n Z_NO_FLUSH: Z_NO_FLUSH$2, Z_PARTIAL_FLUSH, Z_FULL_FLUSH: Z_FULL_FLUSH$1, Z_FINISH: Z_FINISH$3, Z_BLOCK: Z_BLOCK$1,\n Z_OK: Z_OK$3, Z_STREAM_END: Z_STREAM_END$3, Z_STREAM_ERROR: Z_STREAM_ERROR$2, Z_DATA_ERROR: Z_DATA_ERROR$2, Z_BUF_ERROR: Z_BUF_ERROR$1,\n Z_DEFAULT_COMPRESSION: Z_DEFAULT_COMPRESSION$1,\n Z_FILTERED, Z_HUFFMAN_ONLY, Z_RLE, Z_FIXED, Z_DEFAULT_STRATEGY: Z_DEFAULT_STRATEGY$1,\n Z_UNKNOWN,\n Z_DEFLATED: Z_DEFLATED$2\n} = constants$2;\n\n/*============================================================================*/\n\n\nconst MAX_MEM_LEVEL = 9;\n/* Maximum value for memLevel in deflateInit2 */\nconst MAX_WBITS$1 = 15;\n/* 32K LZ77 window */\nconst DEF_MEM_LEVEL = 8;\n\n\nconst LENGTH_CODES = 29;\n/* number of length codes, not counting the special END_BLOCK code */\nconst LITERALS = 256;\n/* number of literal bytes 0..255 */\nconst L_CODES = LITERALS + 1 + LENGTH_CODES;\n/* number of Literal or Length codes, including the END_BLOCK code */\nconst D_CODES = 30;\n/* number of distance codes */\nconst BL_CODES = 19;\n/* number of codes used to transfer the bit lengths */\nconst HEAP_SIZE = 2 * L_CODES + 1;\n/* maximum heap size */\nconst MAX_BITS = 15;\n/* All codes must not exceed MAX_BITS bits */\n\nconst MIN_MATCH = 3;\nconst MAX_MATCH = 258;\nconst MIN_LOOKAHEAD = (MAX_MATCH + MIN_MATCH + 1);\n\nconst PRESET_DICT = 0x20;\n\nconst INIT_STATE = 42; /* zlib header -> BUSY_STATE */\n//#ifdef GZIP\nconst GZIP_STATE = 57; /* gzip header -> BUSY_STATE | EXTRA_STATE */\n//#endif\nconst EXTRA_STATE = 69; /* gzip extra block -> NAME_STATE */\nconst NAME_STATE = 73; /* gzip file name -> COMMENT_STATE */\nconst COMMENT_STATE = 91; /* gzip comment -> HCRC_STATE */\nconst HCRC_STATE = 103; /* gzip header CRC -> BUSY_STATE */\nconst BUSY_STATE = 113; /* deflate -> FINISH_STATE */\nconst FINISH_STATE = 666; /* stream complete */\n\nconst BS_NEED_MORE = 1; /* block not completed, need more input or more output */\nconst BS_BLOCK_DONE = 2; /* block flush performed */\nconst BS_FINISH_STARTED = 3; /* finish started, need only more output at next deflate */\nconst BS_FINISH_DONE = 4; /* finish done, accept no more input or output */\n\nconst OS_CODE = 0x03; // Unix :) . Don't detect, use this default.\n\nconst err = (strm, errorCode) => {\n strm.msg = messages[errorCode];\n return errorCode;\n};\n\nconst rank = (f) => {\n return ((f) * 2) - ((f) > 4 ? 9 : 0);\n};\n\nconst zero = (buf) => {\n let len = buf.length; while (--len >= 0) { buf[len] = 0; }\n};\n\n/* ===========================================================================\n * Slide the hash table when sliding the window down (could be avoided with 32\n * bit values at the expense of memory usage). We slide even when level == 0 to\n * keep the hash table consistent if we switch back to level > 0 later.\n */\nconst slide_hash = (s) => {\n let n, m;\n let p;\n let wsize = s.w_size;\n\n n = s.hash_size;\n p = n;\n do {\n m = s.head[--p];\n s.head[p] = (m >= wsize ? m - wsize : 0);\n } while (--n);\n n = wsize;\n//#ifndef FASTEST\n p = n;\n do {\n m = s.prev[--p];\n s.prev[p] = (m >= wsize ? m - wsize : 0);\n /* If n is not on any hash chain, prev[n] is garbage but\n * its value will never be used.\n */\n } while (--n);\n//#endif\n};\n\n/* eslint-disable new-cap */\nlet HASH_ZLIB = (s, prev, data) => ((prev << s.hash_shift) ^ data) & s.hash_mask;\n// This hash causes less collisions, https://github.com/nodeca/pako/issues/135\n// But breaks binary compatibility\n//let HASH_FAST = (s, prev, data) => ((prev << 8) + (prev >> 8) + (data << 4)) & s.hash_mask;\nlet HASH = HASH_ZLIB;\n\n\n/* =========================================================================\n * Flush as much pending output as possible. All deflate() output, except for\n * some deflate_stored() output, goes through this function so some\n * applications may wish to modify it to avoid allocating a large\n * strm->next_out buffer and copying into it. (See also read_buf()).\n */\nconst flush_pending = (strm) => {\n const s = strm.state;\n\n //_tr_flush_bits(s);\n let len = s.pending;\n if (len > strm.avail_out) {\n len = strm.avail_out;\n }\n if (len === 0) { return; }\n\n strm.output.set(s.pending_buf.subarray(s.pending_out, s.pending_out + len), strm.next_out);\n strm.next_out += len;\n s.pending_out += len;\n strm.total_out += len;\n strm.avail_out -= len;\n s.pending -= len;\n if (s.pending === 0) {\n s.pending_out = 0;\n }\n};\n\n\nconst flush_block_only = (s, last) => {\n _tr_flush_block(s, (s.block_start >= 0 ? s.block_start : -1), s.strstart - s.block_start, last);\n s.block_start = s.strstart;\n flush_pending(s.strm);\n};\n\n\nconst put_byte = (s, b) => {\n s.pending_buf[s.pending++] = b;\n};\n\n\n/* =========================================================================\n * Put a short in the pending buffer. The 16-bit value is put in MSB order.\n * IN assertion: the stream state is correct and there is enough room in\n * pending_buf.\n */\nconst putShortMSB = (s, b) => {\n\n // put_byte(s, (Byte)(b >> 8));\n// put_byte(s, (Byte)(b & 0xff));\n s.pending_buf[s.pending++] = (b >>> 8) & 0xff;\n s.pending_buf[s.pending++] = b & 0xff;\n};\n\n\n/* ===========================================================================\n * Read a new buffer from the current input stream, update the adler32\n * and total number of bytes read. All deflate() input goes through\n * this function so some applications may wish to modify it to avoid\n * allocating a large strm->input buffer and copying from it.\n * (See also flush_pending()).\n */\nconst read_buf = (strm, buf, start, size) => {\n\n let len = strm.avail_in;\n\n if (len > size) { len = size; }\n if (len === 0) { return 0; }\n\n strm.avail_in -= len;\n\n // zmemcpy(buf, strm->next_in, len);\n buf.set(strm.input.subarray(strm.next_in, strm.next_in + len), start);\n if (strm.state.wrap === 1) {\n strm.adler = adler32_1(strm.adler, buf, len, start);\n }\n\n else if (strm.state.wrap === 2) {\n strm.adler = crc32_1(strm.adler, buf, len, start);\n }\n\n strm.next_in += len;\n strm.total_in += len;\n\n return len;\n};\n\n\n/* ===========================================================================\n * Set match_start to the longest match starting at the given string and\n * return its length. Matches shorter or equal to prev_length are discarded,\n * in which case the result is equal to prev_length and match_start is\n * garbage.\n * IN assertions: cur_match is the head of the hash chain for the current\n * string (strstart) and its distance is <= MAX_DIST, and prev_length >= 1\n * OUT assertion: the match length is not greater than s->lookahead.\n */\nconst longest_match = (s, cur_match) => {\n\n let chain_length = s.max_chain_length; /* max hash chain length */\n let scan = s.strstart; /* current string */\n let match; /* matched string */\n let len; /* length of current match */\n let best_len = s.prev_length; /* best match length so far */\n let nice_match = s.nice_match; /* stop if match long enough */\n const limit = (s.strstart > (s.w_size - MIN_LOOKAHEAD)) ?\n s.strstart - (s.w_size - MIN_LOOKAHEAD) : 0/*NIL*/;\n\n const _win = s.window; // shortcut\n\n const wmask = s.w_mask;\n const prev = s.prev;\n\n /* Stop when cur_match becomes <= limit. To simplify the code,\n * we prevent matches with the string of window index 0.\n */\n\n const strend = s.strstart + MAX_MATCH;\n let scan_end1 = _win[scan + best_len - 1];\n let scan_end = _win[scan + best_len];\n\n /* The code is optimized for HASH_BITS >= 8 and MAX_MATCH-2 multiple of 16.\n * It is easy to get rid of this optimization if necessary.\n */\n // Assert(s->hash_bits >= 8 && MAX_MATCH == 258, \"Code too clever\");\n\n /* Do not waste too much time if we already have a good match: */\n if (s.prev_length >= s.good_match) {\n chain_length >>= 2;\n }\n /* Do not look for matches beyond the end of the input. This is necessary\n * to make deflate deterministic.\n */\n if (nice_match > s.lookahead) { nice_match = s.lookahead; }\n\n // Assert((ulg)s->strstart <= s->window_size-MIN_LOOKAHEAD, \"need lookahead\");\n\n do {\n // Assert(cur_match < s->strstart, \"no future\");\n match = cur_match;\n\n /* Skip to next match if the match length cannot increase\n * or if the match length is less than 2. Note that the checks below\n * for insufficient lookahead only occur occasionally for performance\n * reasons. Therefore uninitialized memory will be accessed, and\n * conditional jumps will be made that depend on those values.\n * However the length of the match is limited to the lookahead, so\n * the output of deflate is not affected by the uninitialized values.\n */\n\n if (_win[match + best_len] !== scan_end ||\n _win[match + best_len - 1] !== scan_end1 ||\n _win[match] !== _win[scan] ||\n _win[++match] !== _win[scan + 1]) {\n continue;\n }\n\n /* The check at best_len-1 can be removed because it will be made\n * again later. (This heuristic is not always a win.)\n * It is not necessary to compare scan[2] and match[2] since they\n * are always equal when the other bytes match, given that\n * the hash keys are equal and that HASH_BITS >= 8.\n */\n scan += 2;\n match++;\n // Assert(*scan == *match, \"match[2]?\");\n\n /* We check for insufficient lookahead only every 8th comparison;\n * the 256th check will be made at strstart+258.\n */\n do {\n /*jshint noempty:false*/\n } while (_win[++scan] === _win[++match] && _win[++scan] === _win[++match] &&\n _win[++scan] === _win[++match] && _win[++scan] === _win[++match] &&\n _win[++scan] === _win[++match] && _win[++scan] === _win[++match] &&\n _win[++scan] === _win[++match] && _win[++scan] === _win[++match] &&\n scan < strend);\n\n // Assert(scan <= s->window+(unsigned)(s->window_size-1), \"wild scan\");\n\n len = MAX_MATCH - (strend - scan);\n scan = strend - MAX_MATCH;\n\n if (len > best_len) {\n s.match_start = cur_match;\n best_len = len;\n if (len >= nice_match) {\n break;\n }\n scan_end1 = _win[scan + best_len - 1];\n scan_end = _win[scan + best_len];\n }\n } while ((cur_match = prev[cur_match & wmask]) > limit && --chain_length !== 0);\n\n if (best_len <= s.lookahead) {\n return best_len;\n }\n return s.lookahead;\n};\n\n\n/* ===========================================================================\n * Fill the window when the lookahead becomes insufficient.\n * Updates strstart and lookahead.\n *\n * IN assertion: lookahead < MIN_LOOKAHEAD\n * OUT assertions: strstart <= window_size-MIN_LOOKAHEAD\n * At least one byte has been read, or avail_in == 0; reads are\n * performed for at least two bytes (required for the zip translate_eol\n * option -- not supported here).\n */\nconst fill_window = (s) => {\n\n const _w_size = s.w_size;\n let n, more, str;\n\n //Assert(s->lookahead < MIN_LOOKAHEAD, \"already enough lookahead\");\n\n do {\n more = s.window_size - s.lookahead - s.strstart;\n\n // JS ints have 32 bit, block below not needed\n /* Deal with !@#$% 64K limit: */\n //if (sizeof(int) <= 2) {\n // if (more == 0 && s->strstart == 0 && s->lookahead == 0) {\n // more = wsize;\n //\n // } else if (more == (unsigned)(-1)) {\n // /* Very unlikely, but possible on 16 bit machine if\n // * strstart == 0 && lookahead == 1 (input done a byte at time)\n // */\n // more--;\n // }\n //}\n\n\n /* If the window is almost full and there is insufficient lookahead,\n * move the upper half to the lower one to make room in the upper half.\n */\n if (s.strstart >= _w_size + (_w_size - MIN_LOOKAHEAD)) {\n\n s.window.set(s.window.subarray(_w_size, _w_size + _w_size - more), 0);\n s.match_start -= _w_size;\n s.strstart -= _w_size;\n /* we now have strstart >= MAX_DIST */\n s.block_start -= _w_size;\n if (s.insert > s.strstart) {\n s.insert = s.strstart;\n }\n slide_hash(s);\n more += _w_size;\n }\n if (s.strm.avail_in === 0) {\n break;\n }\n\n /* If there was no sliding:\n * strstart <= WSIZE+MAX_DIST-1 && lookahead <= MIN_LOOKAHEAD - 1 &&\n * more == window_size - lookahead - strstart\n * => more >= window_size - (MIN_LOOKAHEAD-1 + WSIZE + MAX_DIST-1)\n * => more >= window_size - 2*WSIZE + 2\n * In the BIG_MEM or MMAP case (not yet supported),\n * window_size == input_size + MIN_LOOKAHEAD &&\n * strstart + s->lookahead <= input_size => more >= MIN_LOOKAHEAD.\n * Otherwise, window_size == 2*WSIZE so more >= 2.\n * If there was sliding, more >= WSIZE. So in all cases, more >= 2.\n */\n //Assert(more >= 2, \"more < 2\");\n n = read_buf(s.strm, s.window, s.strstart + s.lookahead, more);\n s.lookahead += n;\n\n /* Initialize the hash value now that we have some input: */\n if (s.lookahead + s.insert >= MIN_MATCH) {\n str = s.strstart - s.insert;\n s.ins_h = s.window[str];\n\n /* UPDATE_HASH(s, s->ins_h, s->window[str + 1]); */\n s.ins_h = HASH(s, s.ins_h, s.window[str + 1]);\n//#if MIN_MATCH != 3\n// Call update_hash() MIN_MATCH-3 more times\n//#endif\n while (s.insert) {\n /* UPDATE_HASH(s, s->ins_h, s->window[str + MIN_MATCH-1]); */\n s.ins_h = HASH(s, s.ins_h, s.window[str + MIN_MATCH - 1]);\n\n s.prev[str & s.w_mask] = s.head[s.ins_h];\n s.head[s.ins_h] = str;\n str++;\n s.insert--;\n if (s.lookahead + s.insert < MIN_MATCH) {\n break;\n }\n }\n }\n /* If the whole input has less than MIN_MATCH bytes, ins_h is garbage,\n * but this is not important since only literal bytes will be emitted.\n */\n\n } while (s.lookahead < MIN_LOOKAHEAD && s.strm.avail_in !== 0);\n\n /* If the WIN_INIT bytes after the end of the current data have never been\n * written, then zero those bytes in order to avoid memory check reports of\n * the use of uninitialized (or uninitialised as Julian writes) bytes by\n * the longest match routines. Update the high water mark for the next\n * time through here. WIN_INIT is set to MAX_MATCH since the longest match\n * routines allow scanning to strstart + MAX_MATCH, ignoring lookahead.\n */\n// if (s.high_water < s.window_size) {\n// const curr = s.strstart + s.lookahead;\n// let init = 0;\n//\n// if (s.high_water < curr) {\n// /* Previous high water mark below current data -- zero WIN_INIT\n// * bytes or up to end of window, whichever is less.\n// */\n// init = s.window_size - curr;\n// if (init > WIN_INIT)\n// init = WIN_INIT;\n// zmemzero(s->window + curr, (unsigned)init);\n// s->high_water = curr + init;\n// }\n// else if (s->high_water < (ulg)curr + WIN_INIT) {\n// /* High water mark at or above current data, but below current data\n// * plus WIN_INIT -- zero out to current data plus WIN_INIT, or up\n// * to end of window, whichever is less.\n// */\n// init = (ulg)curr + WIN_INIT - s->high_water;\n// if (init > s->window_size - s->high_water)\n// init = s->window_size - s->high_water;\n// zmemzero(s->window + s->high_water, (unsigned)init);\n// s->high_water += init;\n// }\n// }\n//\n// Assert((ulg)s->strstart <= s->window_size - MIN_LOOKAHEAD,\n// \"not enough room for search\");\n};\n\n/* ===========================================================================\n * Copy without compression as much as possible from the input stream, return\n * the current block state.\n *\n * In case deflateParams() is used to later switch to a non-zero compression\n * level, s->matches (otherwise unused when storing) keeps track of the number\n * of hash table slides to perform. If s->matches is 1, then one hash table\n * slide will be done when switching. If s->matches is 2, the maximum value\n * allowed here, then the hash table will be cleared, since two or more slides\n * is the same as a clear.\n *\n * deflate_stored() is written to minimize the number of times an input byte is\n * copied. It is most efficient with large input and output buffers, which\n * maximizes the opportunites to have a single copy from next_in to next_out.\n */\nconst deflate_stored = (s, flush) => {\n\n /* Smallest worthy block size when not flushing or finishing. By default\n * this is 32K. This can be as small as 507 bytes for memLevel == 1. For\n * large input and output buffers, the stored block size will be larger.\n */\n let min_block = s.pending_buf_size - 5 > s.w_size ? s.w_size : s.pending_buf_size - 5;\n\n /* Copy as many min_block or larger stored blocks directly to next_out as\n * possible. If flushing, copy the remaining available input to next_out as\n * stored blocks, if there is enough space.\n */\n let len, left, have, last = 0;\n let used = s.strm.avail_in;\n do {\n /* Set len to the maximum size block that we can copy directly with the\n * available input data and output space. Set left to how much of that\n * would be copied from what's left in the window.\n */\n len = 65535/* MAX_STORED */; /* maximum deflate stored block length */\n have = (s.bi_valid + 42) >> 3; /* number of header bytes */\n if (s.strm.avail_out < have) { /* need room for header */\n break;\n }\n /* maximum stored block length that will fit in avail_out: */\n have = s.strm.avail_out - have;\n left = s.strstart - s.block_start; /* bytes left in window */\n if (len > left + s.strm.avail_in) {\n len = left + s.strm.avail_in; /* limit len to the input */\n }\n if (len > have) {\n len = have; /* limit len to the output */\n }\n\n /* If the stored block would be less than min_block in length, or if\n * unable to copy all of the available input when flushing, then try\n * copying to the window and the pending buffer instead. Also don't\n * write an empty block when flushing -- deflate() does that.\n */\n if (len < min_block && ((len === 0 && flush !== Z_FINISH$3) ||\n flush === Z_NO_FLUSH$2 ||\n len !== left + s.strm.avail_in)) {\n break;\n }\n\n /* Make a dummy stored block in pending to get the header bytes,\n * including any pending bits. This also updates the debugging counts.\n */\n last = flush === Z_FINISH$3 && len === left + s.strm.avail_in ? 1 : 0;\n _tr_stored_block(s, 0, 0, last);\n\n /* Replace the lengths in the dummy stored block with len. */\n s.pending_buf[s.pending - 4] = len;\n s.pending_buf[s.pending - 3] = len >> 8;\n s.pending_buf[s.pending - 2] = ~len;\n s.pending_buf[s.pending - 1] = ~len >> 8;\n\n /* Write the stored block header bytes. */\n flush_pending(s.strm);\n\n//#ifdef ZLIB_DEBUG\n// /* Update debugging counts for the data about to be copied. */\n// s->compressed_len += len << 3;\n// s->bits_sent += len << 3;\n//#endif\n\n /* Copy uncompressed bytes from the window to next_out. */\n if (left) {\n if (left > len) {\n left = len;\n }\n //zmemcpy(s->strm->next_out, s->window + s->block_start, left);\n s.strm.output.set(s.window.subarray(s.block_start, s.block_start + left), s.strm.next_out);\n s.strm.next_out += left;\n s.strm.avail_out -= left;\n s.strm.total_out += left;\n s.block_start += left;\n len -= left;\n }\n\n /* Copy uncompressed bytes directly from next_in to next_out, updating\n * the check value.\n */\n if (len) {\n read_buf(s.strm, s.strm.output, s.strm.next_out, len);\n s.strm.next_out += len;\n s.strm.avail_out -= len;\n s.strm.total_out += len;\n }\n } while (last === 0);\n\n /* Update the sliding window with the last s->w_size bytes of the copied\n * data, or append all of the copied data to the existing window if less\n * than s->w_size bytes were copied. Also update the number of bytes to\n * insert in the hash tables, in the event that deflateParams() switches to\n * a non-zero compression level.\n */\n used -= s.strm.avail_in; /* number of input bytes directly copied */\n if (used) {\n /* If any input was used, then no unused input remains in the window,\n * therefore s->block_start == s->strstart.\n */\n if (used >= s.w_size) { /* supplant the previous history */\n s.matches = 2; /* clear hash */\n //zmemcpy(s->window, s->strm->next_in - s->w_size, s->w_size);\n s.window.set(s.strm.input.subarray(s.strm.next_in - s.w_size, s.strm.next_in), 0);\n s.strstart = s.w_size;\n s.insert = s.strstart;\n }\n else {\n if (s.window_size - s.strstart <= used) {\n /* Slide the window down. */\n s.strstart -= s.w_size;\n //zmemcpy(s->window, s->window + s->w_size, s->strstart);\n s.window.set(s.window.subarray(s.w_size, s.w_size + s.strstart), 0);\n if (s.matches < 2) {\n s.matches++; /* add a pending slide_hash() */\n }\n if (s.insert > s.strstart) {\n s.insert = s.strstart;\n }\n }\n //zmemcpy(s->window + s->strstart, s->strm->next_in - used, used);\n s.window.set(s.strm.input.subarray(s.strm.next_in - used, s.strm.next_in), s.strstart);\n s.strstart += used;\n s.insert += used > s.w_size - s.insert ? s.w_size - s.insert : used;\n }\n s.block_start = s.strstart;\n }\n if (s.high_water < s.strstart) {\n s.high_water = s.strstart;\n }\n\n /* If the last block was written to next_out, then done. */\n if (last) {\n return BS_FINISH_DONE;\n }\n\n /* If flushing and all input has been consumed, then done. */\n if (flush !== Z_NO_FLUSH$2 && flush !== Z_FINISH$3 &&\n s.strm.avail_in === 0 && s.strstart === s.block_start) {\n return BS_BLOCK_DONE;\n }\n\n /* Fill the window with any remaining input. */\n have = s.window_size - s.strstart;\n if (s.strm.avail_in > have && s.block_start >= s.w_size) {\n /* Slide the window down. */\n s.block_start -= s.w_size;\n s.strstart -= s.w_size;\n //zmemcpy(s->window, s->window + s->w_size, s->strstart);\n s.window.set(s.window.subarray(s.w_size, s.w_size + s.strstart), 0);\n if (s.matches < 2) {\n s.matches++; /* add a pending slide_hash() */\n }\n have += s.w_size; /* more space now */\n if (s.insert > s.strstart) {\n s.insert = s.strstart;\n }\n }\n if (have > s.strm.avail_in) {\n have = s.strm.avail_in;\n }\n if (have) {\n read_buf(s.strm, s.window, s.strstart, have);\n s.strstart += have;\n s.insert += have > s.w_size - s.insert ? s.w_size - s.insert : have;\n }\n if (s.high_water < s.strstart) {\n s.high_water = s.strstart;\n }\n\n /* There was not enough avail_out to write a complete worthy or flushed\n * stored block to next_out. Write a stored block to pending instead, if we\n * have enough input for a worthy block, or if flushing and there is enough\n * room for the remaining input as a stored block in the pending buffer.\n */\n have = (s.bi_valid + 42) >> 3; /* number of header bytes */\n /* maximum stored block length that will fit in pending: */\n have = s.pending_buf_size - have > 65535/* MAX_STORED */ ? 65535/* MAX_STORED */ : s.pending_buf_size - have;\n min_block = have > s.w_size ? s.w_size : have;\n left = s.strstart - s.block_start;\n if (left >= min_block ||\n ((left || flush === Z_FINISH$3) && flush !== Z_NO_FLUSH$2 &&\n s.strm.avail_in === 0 && left <= have)) {\n len = left > have ? have : left;\n last = flush === Z_FINISH$3 && s.strm.avail_in === 0 &&\n len === left ? 1 : 0;\n _tr_stored_block(s, s.block_start, len, last);\n s.block_start += len;\n flush_pending(s.strm);\n }\n\n /* We've done all we can with the available input and output. */\n return last ? BS_FINISH_STARTED : BS_NEED_MORE;\n};\n\n\n/* ===========================================================================\n * Compress as much as possible from the input stream, return the current\n * block state.\n * This function does not perform lazy evaluation of matches and inserts\n * new strings in the dictionary only for unmatched strings or for short\n * matches. It is used only for the fast compression options.\n */\nconst deflate_fast = (s, flush) => {\n\n let hash_head; /* head of the hash chain */\n let bflush; /* set if current block must be flushed */\n\n for (;;) {\n /* Make sure that we always have enough lookahead, except\n * at the end of the input file. We need MAX_MATCH bytes\n * for the next match, plus MIN_MATCH bytes to insert the\n * string following the next match.\n */\n if (s.lookahead < MIN_LOOKAHEAD) {\n fill_window(s);\n if (s.lookahead < MIN_LOOKAHEAD && flush === Z_NO_FLUSH$2) {\n return BS_NEED_MORE;\n }\n if (s.lookahead === 0) {\n break; /* flush the current block */\n }\n }\n\n /* Insert the string window[strstart .. strstart+2] in the\n * dictionary, and set hash_head to the head of the hash chain:\n */\n hash_head = 0/*NIL*/;\n if (s.lookahead >= MIN_MATCH) {\n /*** INSERT_STRING(s, s.strstart, hash_head); ***/\n s.ins_h = HASH(s, s.ins_h, s.window[s.strstart + MIN_MATCH - 1]);\n hash_head = s.prev[s.strstart & s.w_mask] = s.head[s.ins_h];\n s.head[s.ins_h] = s.strstart;\n /***/\n }\n\n /* Find the longest match, discarding those <= prev_length.\n * At this point we have always match_length < MIN_MATCH\n */\n if (hash_head !== 0/*NIL*/ && ((s.strstart - hash_head) <= (s.w_size - MIN_LOOKAHEAD))) {\n /* To simplify the code, we prevent matches with the string\n * of window index 0 (in particular we have to avoid a match\n * of the string with itself at the start of the input file).\n */\n s.match_length = longest_match(s, hash_head);\n /* longest_match() sets match_start */\n }\n if (s.match_length >= MIN_MATCH) {\n // check_match(s, s.strstart, s.match_start, s.match_length); // for debug only\n\n /*** _tr_tally_dist(s, s.strstart - s.match_start,\n s.match_length - MIN_MATCH, bflush); ***/\n bflush = _tr_tally(s, s.strstart - s.match_start, s.match_length - MIN_MATCH);\n\n s.lookahead -= s.match_length;\n\n /* Insert new strings in the hash table only if the match length\n * is not too large. This saves time but degrades compression.\n */\n if (s.match_length <= s.max_lazy_match/*max_insert_length*/ && s.lookahead >= MIN_MATCH) {\n s.match_length--; /* string at strstart already in table */\n do {\n s.strstart++;\n /*** INSERT_STRING(s, s.strstart, hash_head); ***/\n s.ins_h = HASH(s, s.ins_h, s.window[s.strstart + MIN_MATCH - 1]);\n hash_head = s.prev[s.strstart & s.w_mask] = s.head[s.ins_h];\n s.head[s.ins_h] = s.strstart;\n /***/\n /* strstart never exceeds WSIZE-MAX_MATCH, so there are\n * always MIN_MATCH bytes ahead.\n */\n } while (--s.match_length !== 0);\n s.strstart++;\n } else\n {\n s.strstart += s.match_length;\n s.match_length = 0;\n s.ins_h = s.window[s.strstart];\n /* UPDATE_HASH(s, s.ins_h, s.window[s.strstart+1]); */\n s.ins_h = HASH(s, s.ins_h, s.window[s.strstart + 1]);\n\n//#if MIN_MATCH != 3\n// Call UPDATE_HASH() MIN_MATCH-3 more times\n//#endif\n /* If lookahead < MIN_MATCH, ins_h is garbage, but it does not\n * matter since it will be recomputed at next deflate call.\n */\n }\n } else {\n /* No match, output a literal byte */\n //Tracevv((stderr,\"%c\", s.window[s.strstart]));\n /*** _tr_tally_lit(s, s.window[s.strstart], bflush); ***/\n bflush = _tr_tally(s, 0, s.window[s.strstart]);\n\n s.lookahead--;\n s.strstart++;\n }\n if (bflush) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n }\n s.insert = ((s.strstart < (MIN_MATCH - 1)) ? s.strstart : MIN_MATCH - 1);\n if (flush === Z_FINISH$3) {\n /*** FLUSH_BLOCK(s, 1); ***/\n flush_block_only(s, true);\n if (s.strm.avail_out === 0) {\n return BS_FINISH_STARTED;\n }\n /***/\n return BS_FINISH_DONE;\n }\n if (s.sym_next) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n return BS_BLOCK_DONE;\n};\n\n/* ===========================================================================\n * Same as above, but achieves better compression. We use a lazy\n * evaluation for matches: a match is finally adopted only if there is\n * no better match at the next window position.\n */\nconst deflate_slow = (s, flush) => {\n\n let hash_head; /* head of hash chain */\n let bflush; /* set if current block must be flushed */\n\n let max_insert;\n\n /* Process the input block. */\n for (;;) {\n /* Make sure that we always have enough lookahead, except\n * at the end of the input file. We need MAX_MATCH bytes\n * for the next match, plus MIN_MATCH bytes to insert the\n * string following the next match.\n */\n if (s.lookahead < MIN_LOOKAHEAD) {\n fill_window(s);\n if (s.lookahead < MIN_LOOKAHEAD && flush === Z_NO_FLUSH$2) {\n return BS_NEED_MORE;\n }\n if (s.lookahead === 0) { break; } /* flush the current block */\n }\n\n /* Insert the string window[strstart .. strstart+2] in the\n * dictionary, and set hash_head to the head of the hash chain:\n */\n hash_head = 0/*NIL*/;\n if (s.lookahead >= MIN_MATCH) {\n /*** INSERT_STRING(s, s.strstart, hash_head); ***/\n s.ins_h = HASH(s, s.ins_h, s.window[s.strstart + MIN_MATCH - 1]);\n hash_head = s.prev[s.strstart & s.w_mask] = s.head[s.ins_h];\n s.head[s.ins_h] = s.strstart;\n /***/\n }\n\n /* Find the longest match, discarding those <= prev_length.\n */\n s.prev_length = s.match_length;\n s.prev_match = s.match_start;\n s.match_length = MIN_MATCH - 1;\n\n if (hash_head !== 0/*NIL*/ && s.prev_length < s.max_lazy_match &&\n s.strstart - hash_head <= (s.w_size - MIN_LOOKAHEAD)/*MAX_DIST(s)*/) {\n /* To simplify the code, we prevent matches with the string\n * of window index 0 (in particular we have to avoid a match\n * of the string with itself at the start of the input file).\n */\n s.match_length = longest_match(s, hash_head);\n /* longest_match() sets match_start */\n\n if (s.match_length <= 5 &&\n (s.strategy === Z_FILTERED || (s.match_length === MIN_MATCH && s.strstart - s.match_start > 4096/*TOO_FAR*/))) {\n\n /* If prev_match is also MIN_MATCH, match_start is garbage\n * but we will ignore the current match anyway.\n */\n s.match_length = MIN_MATCH - 1;\n }\n }\n /* If there was a match at the previous step and the current\n * match is not better, output the previous match:\n */\n if (s.prev_length >= MIN_MATCH && s.match_length <= s.prev_length) {\n max_insert = s.strstart + s.lookahead - MIN_MATCH;\n /* Do not insert strings in hash table beyond this. */\n\n //check_match(s, s.strstart-1, s.prev_match, s.prev_length);\n\n /***_tr_tally_dist(s, s.strstart - 1 - s.prev_match,\n s.prev_length - MIN_MATCH, bflush);***/\n bflush = _tr_tally(s, s.strstart - 1 - s.prev_match, s.prev_length - MIN_MATCH);\n /* Insert in hash table all strings up to the end of the match.\n * strstart-1 and strstart are already inserted. If there is not\n * enough lookahead, the last two strings are not inserted in\n * the hash table.\n */\n s.lookahead -= s.prev_length - 1;\n s.prev_length -= 2;\n do {\n if (++s.strstart <= max_insert) {\n /*** INSERT_STRING(s, s.strstart, hash_head); ***/\n s.ins_h = HASH(s, s.ins_h, s.window[s.strstart + MIN_MATCH - 1]);\n hash_head = s.prev[s.strstart & s.w_mask] = s.head[s.ins_h];\n s.head[s.ins_h] = s.strstart;\n /***/\n }\n } while (--s.prev_length !== 0);\n s.match_available = 0;\n s.match_length = MIN_MATCH - 1;\n s.strstart++;\n\n if (bflush) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n\n } else if (s.match_available) {\n /* If there was no match at the previous position, output a\n * single literal. If there was a match but the current match\n * is longer, truncate the previous match to a single literal.\n */\n //Tracevv((stderr,\"%c\", s->window[s->strstart-1]));\n /*** _tr_tally_lit(s, s.window[s.strstart-1], bflush); ***/\n bflush = _tr_tally(s, 0, s.window[s.strstart - 1]);\n\n if (bflush) {\n /*** FLUSH_BLOCK_ONLY(s, 0) ***/\n flush_block_only(s, false);\n /***/\n }\n s.strstart++;\n s.lookahead--;\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n } else {\n /* There is no previous match to compare with, wait for\n * the next step to decide.\n */\n s.match_available = 1;\n s.strstart++;\n s.lookahead--;\n }\n }\n //Assert (flush != Z_NO_FLUSH, \"no flush?\");\n if (s.match_available) {\n //Tracevv((stderr,\"%c\", s->window[s->strstart-1]));\n /*** _tr_tally_lit(s, s.window[s.strstart-1], bflush); ***/\n bflush = _tr_tally(s, 0, s.window[s.strstart - 1]);\n\n s.match_available = 0;\n }\n s.insert = s.strstart < MIN_MATCH - 1 ? s.strstart : MIN_MATCH - 1;\n if (flush === Z_FINISH$3) {\n /*** FLUSH_BLOCK(s, 1); ***/\n flush_block_only(s, true);\n if (s.strm.avail_out === 0) {\n return BS_FINISH_STARTED;\n }\n /***/\n return BS_FINISH_DONE;\n }\n if (s.sym_next) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n\n return BS_BLOCK_DONE;\n};\n\n\n/* ===========================================================================\n * For Z_RLE, simply look for runs of bytes, generate matches only of distance\n * one. Do not maintain a hash table. (It will be regenerated if this run of\n * deflate switches away from Z_RLE.)\n */\nconst deflate_rle = (s, flush) => {\n\n let bflush; /* set if current block must be flushed */\n let prev; /* byte at distance one to match */\n let scan, strend; /* scan goes up to strend for length of run */\n\n const _win = s.window;\n\n for (;;) {\n /* Make sure that we always have enough lookahead, except\n * at the end of the input file. We need MAX_MATCH bytes\n * for the longest run, plus one for the unrolled loop.\n */\n if (s.lookahead <= MAX_MATCH) {\n fill_window(s);\n if (s.lookahead <= MAX_MATCH && flush === Z_NO_FLUSH$2) {\n return BS_NEED_MORE;\n }\n if (s.lookahead === 0) { break; } /* flush the current block */\n }\n\n /* See how many times the previous byte repeats */\n s.match_length = 0;\n if (s.lookahead >= MIN_MATCH && s.strstart > 0) {\n scan = s.strstart - 1;\n prev = _win[scan];\n if (prev === _win[++scan] && prev === _win[++scan] && prev === _win[++scan]) {\n strend = s.strstart + MAX_MATCH;\n do {\n /*jshint noempty:false*/\n } while (prev === _win[++scan] && prev === _win[++scan] &&\n prev === _win[++scan] && prev === _win[++scan] &&\n prev === _win[++scan] && prev === _win[++scan] &&\n prev === _win[++scan] && prev === _win[++scan] &&\n scan < strend);\n s.match_length = MAX_MATCH - (strend - scan);\n if (s.match_length > s.lookahead) {\n s.match_length = s.lookahead;\n }\n }\n //Assert(scan <= s->window+(uInt)(s->window_size-1), \"wild scan\");\n }\n\n /* Emit match if have run of MIN_MATCH or longer, else emit literal */\n if (s.match_length >= MIN_MATCH) {\n //check_match(s, s.strstart, s.strstart - 1, s.match_length);\n\n /*** _tr_tally_dist(s, 1, s.match_length - MIN_MATCH, bflush); ***/\n bflush = _tr_tally(s, 1, s.match_length - MIN_MATCH);\n\n s.lookahead -= s.match_length;\n s.strstart += s.match_length;\n s.match_length = 0;\n } else {\n /* No match, output a literal byte */\n //Tracevv((stderr,\"%c\", s->window[s->strstart]));\n /*** _tr_tally_lit(s, s.window[s.strstart], bflush); ***/\n bflush = _tr_tally(s, 0, s.window[s.strstart]);\n\n s.lookahead--;\n s.strstart++;\n }\n if (bflush) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n }\n s.insert = 0;\n if (flush === Z_FINISH$3) {\n /*** FLUSH_BLOCK(s, 1); ***/\n flush_block_only(s, true);\n if (s.strm.avail_out === 0) {\n return BS_FINISH_STARTED;\n }\n /***/\n return BS_FINISH_DONE;\n }\n if (s.sym_next) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n return BS_BLOCK_DONE;\n};\n\n/* ===========================================================================\n * For Z_HUFFMAN_ONLY, do not look for matches. Do not maintain a hash table.\n * (It will be regenerated if this run of deflate switches away from Huffman.)\n */\nconst deflate_huff = (s, flush) => {\n\n let bflush; /* set if current block must be flushed */\n\n for (;;) {\n /* Make sure that we have a literal to write. */\n if (s.lookahead === 0) {\n fill_window(s);\n if (s.lookahead === 0) {\n if (flush === Z_NO_FLUSH$2) {\n return BS_NEED_MORE;\n }\n break; /* flush the current block */\n }\n }\n\n /* Output a literal byte */\n s.match_length = 0;\n //Tracevv((stderr,\"%c\", s->window[s->strstart]));\n /*** _tr_tally_lit(s, s.window[s.strstart], bflush); ***/\n bflush = _tr_tally(s, 0, s.window[s.strstart]);\n s.lookahead--;\n s.strstart++;\n if (bflush) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n }\n s.insert = 0;\n if (flush === Z_FINISH$3) {\n /*** FLUSH_BLOCK(s, 1); ***/\n flush_block_only(s, true);\n if (s.strm.avail_out === 0) {\n return BS_FINISH_STARTED;\n }\n /***/\n return BS_FINISH_DONE;\n }\n if (s.sym_next) {\n /*** FLUSH_BLOCK(s, 0); ***/\n flush_block_only(s, false);\n if (s.strm.avail_out === 0) {\n return BS_NEED_MORE;\n }\n /***/\n }\n return BS_BLOCK_DONE;\n};\n\n/* Values for max_lazy_match, good_match and max_chain_length, depending on\n * the desired pack level (0..9). The values given below have been tuned to\n * exclude worst case performance for pathological files. Better values may be\n * found for specific files.\n */\nfunction Config(good_length, max_lazy, nice_length, max_chain, func) {\n\n this.good_length = good_length;\n this.max_lazy = max_lazy;\n this.nice_length = nice_length;\n this.max_chain = max_chain;\n this.func = func;\n}\n\nconst configuration_table = [\n /* good lazy nice chain */\n new Config(0, 0, 0, 0, deflate_stored), /* 0 store only */\n new Config(4, 4, 8, 4, deflate_fast), /* 1 max speed, no lazy matches */\n new Config(4, 5, 16, 8, deflate_fast), /* 2 */\n new Config(4, 6, 32, 32, deflate_fast), /* 3 */\n\n new Config(4, 4, 16, 16, deflate_slow), /* 4 lazy matches */\n new Config(8, 16, 32, 32, deflate_slow), /* 5 */\n new Config(8, 16, 128, 128, deflate_slow), /* 6 */\n new Config(8, 32, 128, 256, deflate_slow), /* 7 */\n new Config(32, 128, 258, 1024, deflate_slow), /* 8 */\n new Config(32, 258, 258, 4096, deflate_slow) /* 9 max compression */\n];\n\n\n/* ===========================================================================\n * Initialize the \"longest match\" routines for a new zlib stream\n */\nconst lm_init = (s) => {\n\n s.window_size = 2 * s.w_size;\n\n /*** CLEAR_HASH(s); ***/\n zero(s.head); // Fill with NIL (= 0);\n\n /* Set the default configuration parameters:\n */\n s.max_lazy_match = configuration_table[s.level].max_lazy;\n s.good_match = configuration_table[s.level].good_length;\n s.nice_match = configuration_table[s.level].nice_length;\n s.max_chain_length = configuration_table[s.level].max_chain;\n\n s.strstart = 0;\n s.block_start = 0;\n s.lookahead = 0;\n s.insert = 0;\n s.match_length = s.prev_length = MIN_MATCH - 1;\n s.match_available = 0;\n s.ins_h = 0;\n};\n\n\nfunction DeflateState() {\n this.strm = null; /* pointer back to this zlib stream */\n this.status = 0; /* as the name implies */\n this.pending_buf = null; /* output still pending */\n this.pending_buf_size = 0; /* size of pending_buf */\n this.pending_out = 0; /* next pending byte to output to the stream */\n this.pending = 0; /* nb of bytes in the pending buffer */\n this.wrap = 0; /* bit 0 true for zlib, bit 1 true for gzip */\n this.gzhead = null; /* gzip header information to write */\n this.gzindex = 0; /* where in extra, name, or comment */\n this.method = Z_DEFLATED$2; /* can only be DEFLATED */\n this.last_flush = -1; /* value of flush param for previous deflate call */\n\n this.w_size = 0; /* LZ77 window size (32K by default) */\n this.w_bits = 0; /* log2(w_size) (8..16) */\n this.w_mask = 0; /* w_size - 1 */\n\n this.window = null;\n /* Sliding window. Input bytes are read into the second half of the window,\n * and move to the first half later to keep a dictionary of at least wSize\n * bytes. With this organization, matches are limited to a distance of\n * wSize-MAX_MATCH bytes, but this ensures that IO is always\n * performed with a length multiple of the block size.\n */\n\n this.window_size = 0;\n /* Actual size of window: 2*wSize, except when the user input buffer\n * is directly used as sliding window.\n */\n\n this.prev = null;\n /* Link to older string with same hash index. To limit the size of this\n * array to 64K, this link is maintained only for the last 32K strings.\n * An index in this array is thus a window index modulo 32K.\n */\n\n this.head = null; /* Heads of the hash chains or NIL. */\n\n this.ins_h = 0; /* hash index of string to be inserted */\n this.hash_size = 0; /* number of elements in hash table */\n this.hash_bits = 0; /* log2(hash_size) */\n this.hash_mask = 0; /* hash_size-1 */\n\n this.hash_shift = 0;\n /* Number of bits by which ins_h must be shifted at each input\n * step. It must be such that after MIN_MATCH steps, the oldest\n * byte no longer takes part in the hash key, that is:\n * hash_shift * MIN_MATCH >= hash_bits\n */\n\n this.block_start = 0;\n /* Window position at the beginning of the current output block. Gets\n * negative when the window is moved backwards.\n */\n\n this.match_length = 0; /* length of best match */\n this.prev_match = 0; /* previous match */\n this.match_available = 0; /* set if previous match exists */\n this.strstart = 0; /* start of string to insert */\n this.match_start = 0; /* start of matching string */\n this.lookahead = 0; /* number of valid bytes ahead in window */\n\n this.prev_length = 0;\n /* Length of the best match at previous step. Matches not greater than this\n * are discarded. This is used in the lazy match evaluation.\n */\n\n this.max_chain_length = 0;\n /* To speed up deflation, hash chains are never searched beyond this\n * length. A higher limit improves compression ratio but degrades the\n * speed.\n */\n\n this.max_lazy_match = 0;\n /* Attempt to find a better match only when the current match is strictly\n * smaller than this value. This mechanism is used only for compression\n * levels >= 4.\n */\n // That's alias to max_lazy_match, don't use directly\n //this.max_insert_length = 0;\n /* Insert new strings in the hash table only if the match length is not\n * greater than this length. This saves time but degrades compression.\n * max_insert_length is used only for compression levels <= 3.\n */\n\n this.level = 0; /* compression level (1..9) */\n this.strategy = 0; /* favor or force Huffman coding*/\n\n this.good_match = 0;\n /* Use a faster search when the previous match is longer than this */\n\n this.nice_match = 0; /* Stop searching when current match exceeds this */\n\n /* used by trees.c: */\n\n /* Didn't use ct_data typedef below to suppress compiler warning */\n\n // struct ct_data_s dyn_ltree[HEAP_SIZE]; /* literal and length tree */\n // struct ct_data_s dyn_dtree[2*D_CODES+1]; /* distance tree */\n // struct ct_data_s bl_tree[2*BL_CODES+1]; /* Huffman tree for bit lengths */\n\n // Use flat array of DOUBLE size, with interleaved fata,\n // because JS does not support effective\n this.dyn_ltree = new Uint16Array(HEAP_SIZE * 2);\n this.dyn_dtree = new Uint16Array((2 * D_CODES + 1) * 2);\n this.bl_tree = new Uint16Array((2 * BL_CODES + 1) * 2);\n zero(this.dyn_ltree);\n zero(this.dyn_dtree);\n zero(this.bl_tree);\n\n this.l_desc = null; /* desc. for literal tree */\n this.d_desc = null; /* desc. for distance tree */\n this.bl_desc = null; /* desc. for bit length tree */\n\n //ush bl_count[MAX_BITS+1];\n this.bl_count = new Uint16Array(MAX_BITS + 1);\n /* number of codes at each bit length for an optimal tree */\n\n //int heap[2*L_CODES+1]; /* heap used to build the Huffman trees */\n this.heap = new Uint16Array(2 * L_CODES + 1); /* heap used to build the Huffman trees */\n zero(this.heap);\n\n this.heap_len = 0; /* number of elements in the heap */\n this.heap_max = 0; /* element of largest frequency */\n /* The sons of heap[n] are heap[2*n] and heap[2*n+1]. heap[0] is not used.\n * The same heap array is used to build all trees.\n */\n\n this.depth = new Uint16Array(2 * L_CODES + 1); //uch depth[2*L_CODES+1];\n zero(this.depth);\n /* Depth of each subtree used as tie breaker for trees of equal frequency\n */\n\n this.sym_buf = 0; /* buffer for distances and literals/lengths */\n\n this.lit_bufsize = 0;\n /* Size of match buffer for literals/lengths. There are 4 reasons for\n * limiting lit_bufsize to 64K:\n * - frequencies can be kept in 16 bit counters\n * - if compression is not successful for the first block, all input\n * data is still in the window so we can still emit a stored block even\n * when input comes from standard input. (This can also be done for\n * all blocks if lit_bufsize is not greater than 32K.)\n * - if compression is not successful for a file smaller than 64K, we can\n * even emit a stored file instead of a stored block (saving 5 bytes).\n * This is applicable only for zip (not gzip or zlib).\n * - creating new Huffman trees less frequently may not provide fast\n * adaptation to changes in the input data statistics. (Take for\n * example a binary file with poorly compressible code followed by\n * a highly compressible string table.) Smaller buffer sizes give\n * fast adaptation but have of course the overhead of transmitting\n * trees more frequently.\n * - I can't count above 4\n */\n\n this.sym_next = 0; /* running index in sym_buf */\n this.sym_end = 0; /* symbol table full when sym_next reaches this */\n\n this.opt_len = 0; /* bit length of current block with optimal trees */\n this.static_len = 0; /* bit length of current block with static trees */\n this.matches = 0; /* number of string matches in current block */\n this.insert = 0; /* bytes at end of window left to insert */\n\n\n this.bi_buf = 0;\n /* Output buffer. bits are inserted starting at the bottom (least\n * significant bits).\n */\n this.bi_valid = 0;\n /* Number of valid bits in bi_buf. All bits above the last valid bit\n * are always zero.\n */\n\n // Used for window memory init. We safely ignore it for JS. That makes\n // sense only for pointers and memory check tools.\n //this.high_water = 0;\n /* High water mark offset in window for initialized bytes -- bytes above\n * this are set to zero in order to avoid memory check warnings when\n * longest match routines access bytes past the input. This is then\n * updated to the new high water mark.\n */\n}\n\n\n/* =========================================================================\n * Check for a valid deflate stream state. Return 0 if ok, 1 if not.\n */\nconst deflateStateCheck = (strm) => {\n\n if (!strm) {\n return 1;\n }\n const s = strm.state;\n if (!s || s.strm !== strm || (s.status !== INIT_STATE &&\n//#ifdef GZIP\n s.status !== GZIP_STATE &&\n//#endif\n s.status !== EXTRA_STATE &&\n s.status !== NAME_STATE &&\n s.status !== COMMENT_STATE &&\n s.status !== HCRC_STATE &&\n s.status !== BUSY_STATE &&\n s.status !== FINISH_STATE)) {\n return 1;\n }\n return 0;\n};\n\n\nconst deflateResetKeep = (strm) => {\n\n if (deflateStateCheck(strm)) {\n return err(strm, Z_STREAM_ERROR$2);\n }\n\n strm.total_in = strm.total_out = 0;\n strm.data_type = Z_UNKNOWN;\n\n const s = strm.state;\n s.pending = 0;\n s.pending_out = 0;\n\n if (s.wrap < 0) {\n s.wrap = -s.wrap;\n /* was made negative by deflate(..., Z_FINISH); */\n }\n s.status =\n//#ifdef GZIP\n s.wrap === 2 ? GZIP_STATE :\n//#endif\n s.wrap ? INIT_STATE : BUSY_STATE;\n strm.adler = (s.wrap === 2) ?\n 0 // crc32(0, Z_NULL, 0)\n :\n 1; // adler32(0, Z_NULL, 0)\n s.last_flush = -2;\n _tr_init(s);\n return Z_OK$3;\n};\n\n\nconst deflateReset = (strm) => {\n\n const ret = deflateResetKeep(strm);\n if (ret === Z_OK$3) {\n lm_init(strm.state);\n }\n return ret;\n};\n\n\nconst deflateSetHeader = (strm, head) => {\n\n if (deflateStateCheck(strm) || strm.state.wrap !== 2) {\n return Z_STREAM_ERROR$2;\n }\n strm.state.gzhead = head;\n return Z_OK$3;\n};\n\n\nconst deflateInit2 = (strm, level, method, windowBits, memLevel, strategy) => {\n\n if (!strm) { // === Z_NULL\n return Z_STREAM_ERROR$2;\n }\n let wrap = 1;\n\n if (level === Z_DEFAULT_COMPRESSION$1) {\n level = 6;\n }\n\n if (windowBits < 0) { /* suppress zlib wrapper */\n wrap = 0;\n windowBits = -windowBits;\n }\n\n else if (windowBits > 15) {\n wrap = 2; /* write gzip wrapper instead */\n windowBits -= 16;\n }\n\n\n if (memLevel < 1 || memLevel > MAX_MEM_LEVEL || method !== Z_DEFLATED$2 ||\n windowBits < 8 || windowBits > 15 || level < 0 || level > 9 ||\n strategy < 0 || strategy > Z_FIXED || (windowBits === 8 && wrap !== 1)) {\n return err(strm, Z_STREAM_ERROR$2);\n }\n\n\n if (windowBits === 8) {\n windowBits = 9;\n }\n /* until 256-byte window bug fixed */\n\n const s = new DeflateState();\n\n strm.state = s;\n s.strm = strm;\n s.status = INIT_STATE; /* to pass state test in deflateReset() */\n\n s.wrap = wrap;\n s.gzhead = null;\n s.w_bits = windowBits;\n s.w_size = 1 << s.w_bits;\n s.w_mask = s.w_size - 1;\n\n s.hash_bits = memLevel + 7;\n s.hash_size = 1 << s.hash_bits;\n s.hash_mask = s.hash_size - 1;\n s.hash_shift = ~~((s.hash_bits + MIN_MATCH - 1) / MIN_MATCH);\n\n s.window = new Uint8Array(s.w_size * 2);\n s.head = new Uint16Array(s.hash_size);\n s.prev = new Uint16Array(s.w_size);\n\n // Don't need mem init magic for JS.\n //s.high_water = 0; /* nothing written to s->window yet */\n\n s.lit_bufsize = 1 << (memLevel + 6); /* 16K elements by default */\n\n /* We overlay pending_buf and sym_buf. This works since the average size\n * for length/distance pairs over any compressed block is assured to be 31\n * bits or less.\n *\n * Analysis: The longest fixed codes are a length code of 8 bits plus 5\n * extra bits, for lengths 131 to 257. The longest fixed distance codes are\n * 5 bits plus 13 extra bits, for distances 16385 to 32768. The longest\n * possible fixed-codes length/distance pair is then 31 bits total.\n *\n * sym_buf starts one-fourth of the way into pending_buf. So there are\n * three bytes in sym_buf for every four bytes in pending_buf. Each symbol\n * in sym_buf is three bytes -- two for the distance and one for the\n * literal/length. As each symbol is consumed, the pointer to the next\n * sym_buf value to read moves forward three bytes. From that symbol, up to\n * 31 bits are written to pending_buf. The closest the written pending_buf\n * bits gets to the next sym_buf symbol to read is just before the last\n * code is written. At that time, 31*(n-2) bits have been written, just\n * after 24*(n-2) bits have been consumed from sym_buf. sym_buf starts at\n * 8*n bits into pending_buf. (Note that the symbol buffer fills when n-1\n * symbols are written.) The closest the writing gets to what is unread is\n * then n+14 bits. Here n is lit_bufsize, which is 16384 by default, and\n * can range from 128 to 32768.\n *\n * Therefore, at a minimum, there are 142 bits of space between what is\n * written and what is read in the overlain buffers, so the symbols cannot\n * be overwritten by the compressed data. That space is actually 139 bits,\n * due to the three-bit fixed-code block header.\n *\n * That covers the case where either Z_FIXED is specified, forcing fixed\n * codes, or when the use of fixed codes is chosen, because that choice\n * results in a smaller compressed block than dynamic codes. That latter\n * condition then assures that the above analysis also covers all dynamic\n * blocks. A dynamic-code block will only be chosen to be emitted if it has\n * fewer bits than a fixed-code block would for the same set of symbols.\n * Therefore its average symbol length is assured to be less than 31. So\n * the compressed data for a dynamic block also cannot overwrite the\n * symbols from which it is being constructed.\n */\n\n s.pending_buf_size = s.lit_bufsize * 4;\n s.pending_buf = new Uint8Array(s.pending_buf_size);\n\n // It is offset from `s.pending_buf` (size is `s.lit_bufsize * 2`)\n //s->sym_buf = s->pending_buf + s->lit_bufsize;\n s.sym_buf = s.lit_bufsize;\n\n //s->sym_end = (s->lit_bufsize - 1) * 3;\n s.sym_end = (s.lit_bufsize - 1) * 3;\n /* We avoid equality with lit_bufsize*3 because of wraparound at 64K\n * on 16 bit machines and because stored blocks are restricted to\n * 64K-1 bytes.\n */\n\n s.level = level;\n s.strategy = strategy;\n s.method = method;\n\n return deflateReset(strm);\n};\n\nconst deflateInit = (strm, level) => {\n\n return deflateInit2(strm, level, Z_DEFLATED$2, MAX_WBITS$1, DEF_MEM_LEVEL, Z_DEFAULT_STRATEGY$1);\n};\n\n\n/* ========================================================================= */\nconst deflate$2 = (strm, flush) => {\n\n if (deflateStateCheck(strm) || flush > Z_BLOCK$1 || flush < 0) {\n return strm ? err(strm, Z_STREAM_ERROR$2) : Z_STREAM_ERROR$2;\n }\n\n const s = strm.state;\n\n if (!strm.output ||\n (strm.avail_in !== 0 && !strm.input) ||\n (s.status === FINISH_STATE && flush !== Z_FINISH$3)) {\n return err(strm, (strm.avail_out === 0) ? Z_BUF_ERROR$1 : Z_STREAM_ERROR$2);\n }\n\n const old_flush = s.last_flush;\n s.last_flush = flush;\n\n /* Flush as much pending output as possible */\n if (s.pending !== 0) {\n flush_pending(strm);\n if (strm.avail_out === 0) {\n /* Since avail_out is 0, deflate will be called again with\n * more output space, but possibly with both pending and\n * avail_in equal to zero. There won't be anything to do,\n * but this is not an error situation so make sure we\n * return OK instead of BUF_ERROR at next call of deflate:\n */\n s.last_flush = -1;\n return Z_OK$3;\n }\n\n /* Make sure there is something to do and avoid duplicate consecutive\n * flushes. For repeated and useless calls with Z_FINISH, we keep\n * returning Z_STREAM_END instead of Z_BUF_ERROR.\n */\n } else if (strm.avail_in === 0 && rank(flush) <= rank(old_flush) &&\n flush !== Z_FINISH$3) {\n return err(strm, Z_BUF_ERROR$1);\n }\n\n /* User must not provide more input after the first FINISH: */\n if (s.status === FINISH_STATE && strm.avail_in !== 0) {\n return err(strm, Z_BUF_ERROR$1);\n }\n\n /* Write the header */\n if (s.status === INIT_STATE && s.wrap === 0) {\n s.status = BUSY_STATE;\n }\n if (s.status === INIT_STATE) {\n /* zlib header */\n let header = (Z_DEFLATED$2 + ((s.w_bits - 8) << 4)) << 8;\n let level_flags = -1;\n\n if (s.strategy >= Z_HUFFMAN_ONLY || s.level < 2) {\n level_flags = 0;\n } else if (s.level < 6) {\n level_flags = 1;\n } else if (s.level === 6) {\n level_flags = 2;\n } else {\n level_flags = 3;\n }\n header |= (level_flags << 6);\n if (s.strstart !== 0) { header |= PRESET_DICT; }\n header += 31 - (header % 31);\n\n putShortMSB(s, header);\n\n /* Save the adler32 of the preset dictionary: */\n if (s.strstart !== 0) {\n putShortMSB(s, strm.adler >>> 16);\n putShortMSB(s, strm.adler & 0xffff);\n }\n strm.adler = 1; // adler32(0L, Z_NULL, 0);\n s.status = BUSY_STATE;\n\n /* Compression must start with an empty pending buffer */\n flush_pending(strm);\n if (s.pending !== 0) {\n s.last_flush = -1;\n return Z_OK$3;\n }\n }\n//#ifdef GZIP\n if (s.status === GZIP_STATE) {\n /* gzip header */\n strm.adler = 0; //crc32(0L, Z_NULL, 0);\n put_byte(s, 31);\n put_byte(s, 139);\n put_byte(s, 8);\n if (!s.gzhead) { // s->gzhead == Z_NULL\n put_byte(s, 0);\n put_byte(s, 0);\n put_byte(s, 0);\n put_byte(s, 0);\n put_byte(s, 0);\n put_byte(s, s.level === 9 ? 2 :\n (s.strategy >= Z_HUFFMAN_ONLY || s.level < 2 ?\n 4 : 0));\n put_byte(s, OS_CODE);\n s.status = BUSY_STATE;\n\n /* Compression must start with an empty pending buffer */\n flush_pending(strm);\n if (s.pending !== 0) {\n s.last_flush = -1;\n return Z_OK$3;\n }\n }\n else {\n put_byte(s, (s.gzhead.text ? 1 : 0) +\n (s.gzhead.hcrc ? 2 : 0) +\n (!s.gzhead.extra ? 0 : 4) +\n (!s.gzhead.name ? 0 : 8) +\n (!s.gzhead.comment ? 0 : 16)\n );\n put_byte(s, s.gzhead.time & 0xff);\n put_byte(s, (s.gzhead.time >> 8) & 0xff);\n put_byte(s, (s.gzhead.time >> 16) & 0xff);\n put_byte(s, (s.gzhead.time >> 24) & 0xff);\n put_byte(s, s.level === 9 ? 2 :\n (s.strategy >= Z_HUFFMAN_ONLY || s.level < 2 ?\n 4 : 0));\n put_byte(s, s.gzhead.os & 0xff);\n if (s.gzhead.extra && s.gzhead.extra.length) {\n put_byte(s, s.gzhead.extra.length & 0xff);\n put_byte(s, (s.gzhead.extra.length >> 8) & 0xff);\n }\n if (s.gzhead.hcrc) {\n strm.adler = crc32_1(strm.adler, s.pending_buf, s.pending, 0);\n }\n s.gzindex = 0;\n s.status = EXTRA_STATE;\n }\n }\n if (s.status === EXTRA_STATE) {\n if (s.gzhead.extra/* != Z_NULL*/) {\n let beg = s.pending; /* start of bytes to update crc */\n let left = (s.gzhead.extra.length & 0xffff) - s.gzindex;\n while (s.pending + left > s.pending_buf_size) {\n let copy = s.pending_buf_size - s.pending;\n // zmemcpy(s.pending_buf + s.pending,\n // s.gzhead.extra + s.gzindex, copy);\n s.pending_buf.set(s.gzhead.extra.subarray(s.gzindex, s.gzindex + copy), s.pending);\n s.pending = s.pending_buf_size;\n //--- HCRC_UPDATE(beg) ---//\n if (s.gzhead.hcrc && s.pending > beg) {\n strm.adler = crc32_1(strm.adler, s.pending_buf, s.pending - beg, beg);\n }\n //---//\n s.gzindex += copy;\n flush_pending(strm);\n if (s.pending !== 0) {\n s.last_flush = -1;\n return Z_OK$3;\n }\n beg = 0;\n left -= copy;\n }\n // JS specific: s.gzhead.extra may be TypedArray or Array for backward compatibility\n // TypedArray.slice and TypedArray.from don't exist in IE10-IE11\n let gzhead_extra = new Uint8Array(s.gzhead.extra);\n // zmemcpy(s->pending_buf + s->pending,\n // s->gzhead->extra + s->gzindex, left);\n s.pending_buf.set(gzhead_extra.subarray(s.gzindex, s.gzindex + left), s.pending);\n s.pending += left;\n //--- HCRC_UPDATE(beg) ---//\n if (s.gzhead.hcrc && s.pending > beg) {\n strm.adler = crc32_1(strm.adler, s.pending_buf, s.pending - beg, beg);\n }\n //---//\n s.gzindex = 0;\n }\n s.status = NAME_STATE;\n }\n if (s.status === NAME_STATE) {\n if (s.gzhead.name/* != Z_NULL*/) {\n let beg = s.pending; /* start of bytes to update crc */\n let val;\n do {\n if (s.pending === s.pending_buf_size) {\n //--- HCRC_UPDATE(beg) ---//\n if (s.gzhead.hcrc && s.pending > beg) {\n strm.adler = crc32_1(strm.adler, s.pending_buf, s.pending - beg, beg);\n }\n //---//\n flush_pending(strm);\n if (s.pending !== 0) {\n s.last_flush = -1;\n return Z_OK$3;\n }\n beg = 0;\n }\n // JS specific: little magic to add zero terminator to end of string\n if (s.gzindex < s.gzhead.name.length) {\n val = s.gzhead.name.charCodeAt(s.gzindex++) & 0xff;\n } else {\n val = 0;\n }\n put_byte(s, val);\n } while (val !== 0);\n //--- HCRC_UPDATE(beg) ---//\n if (s.gzhead.hcrc && s.pending > beg) {\n strm.adler = crc32_1(strm.adler, s.pending_buf, s.pending - beg, beg);\n }\n //---//\n s.gzindex = 0;\n }\n s.status = COMMENT_STATE;\n }\n if (s.status === COMMENT_STATE) {\n if (s.gzhead.comment/* != Z_NULL*/) {\n let beg = s.pending; /* start of bytes to update crc */\n let val;\n do {\n if (s.pending === s.pending_buf_size) {\n //--- HCRC_UPDATE(beg) ---//\n if (s.gzhead.hcrc && s.pending > beg) {\n strm.adler = crc32_1(strm.adler, s.pending_buf, s.pending - beg, beg);\n }\n //---//\n flush_pending(strm);\n if (s.pending !== 0) {\n s.last_flush = -1;\n return Z_OK$3;\n }\n beg = 0;\n }\n // JS specific: little magic to add zero terminator to end of string\n if (s.gzindex < s.gzhead.comment.length) {\n val = s.gzhead.comment.charCodeAt(s.gzindex++) & 0xff;\n } else {\n val = 0;\n }\n put_byte(s, val);\n } while (val !== 0);\n //--- HCRC_UPDATE(beg) ---//\n if (s.gzhead.hcrc && s.pending > beg) {\n strm.adler = crc32_1(strm.adler, s.pending_buf, s.pending - beg, beg);\n }\n //---//\n }\n s.status = HCRC_STATE;\n }\n if (s.status === HCRC_STATE) {\n if (s.gzhead.hcrc) {\n if (s.pending + 2 > s.pending_buf_size) {\n flush_pending(strm);\n if (s.pending !== 0) {\n s.last_flush = -1;\n return Z_OK$3;\n }\n }\n put_byte(s, strm.adler & 0xff);\n put_byte(s, (strm.adler >> 8) & 0xff);\n strm.adler = 0; //crc32(0L, Z_NULL, 0);\n }\n s.status = BUSY_STATE;\n\n /* Compression must start with an empty pending buffer */\n flush_pending(strm);\n if (s.pending !== 0) {\n s.last_flush = -1;\n return Z_OK$3;\n }\n }\n//#endif\n\n /* Start a new block or continue the current one.\n */\n if (strm.avail_in !== 0 || s.lookahead !== 0 ||\n (flush !== Z_NO_FLUSH$2 && s.status !== FINISH_STATE)) {\n let bstate = s.level === 0 ? deflate_stored(s, flush) :\n s.strategy === Z_HUFFMAN_ONLY ? deflate_huff(s, flush) :\n s.strategy === Z_RLE ? deflate_rle(s, flush) :\n configuration_table[s.level].func(s, flush);\n\n if (bstate === BS_FINISH_STARTED || bstate === BS_FINISH_DONE) {\n s.status = FINISH_STATE;\n }\n if (bstate === BS_NEED_MORE || bstate === BS_FINISH_STARTED) {\n if (strm.avail_out === 0) {\n s.last_flush = -1;\n /* avoid BUF_ERROR next call, see above */\n }\n return Z_OK$3;\n /* If flush != Z_NO_FLUSH && avail_out == 0, the next call\n * of deflate should use the same flush parameter to make sure\n * that the flush is complete. So we don't have to output an\n * empty block here, this will be done at next call. This also\n * ensures that for a very small output buffer, we emit at most\n * one empty block.\n */\n }\n if (bstate === BS_BLOCK_DONE) {\n if (flush === Z_PARTIAL_FLUSH) {\n _tr_align(s);\n }\n else if (flush !== Z_BLOCK$1) { /* FULL_FLUSH or SYNC_FLUSH */\n\n _tr_stored_block(s, 0, 0, false);\n /* For a full flush, this empty block will be recognized\n * as a special marker by inflate_sync().\n */\n if (flush === Z_FULL_FLUSH$1) {\n /*** CLEAR_HASH(s); ***/ /* forget history */\n zero(s.head); // Fill with NIL (= 0);\n\n if (s.lookahead === 0) {\n s.strstart = 0;\n s.block_start = 0;\n s.insert = 0;\n }\n }\n }\n flush_pending(strm);\n if (strm.avail_out === 0) {\n s.last_flush = -1; /* avoid BUF_ERROR at next call, see above */\n return Z_OK$3;\n }\n }\n }\n\n if (flush !== Z_FINISH$3) { return Z_OK$3; }\n if (s.wrap <= 0) { return Z_STREAM_END$3; }\n\n /* Write the trailer */\n if (s.wrap === 2) {\n put_byte(s, strm.adler & 0xff);\n put_byte(s, (strm.adler >> 8) & 0xff);\n put_byte(s, (strm.adler >> 16) & 0xff);\n put_byte(s, (strm.adler >> 24) & 0xff);\n put_byte(s, strm.total_in & 0xff);\n put_byte(s, (strm.total_in >> 8) & 0xff);\n put_byte(s, (strm.total_in >> 16) & 0xff);\n put_byte(s, (strm.total_in >> 24) & 0xff);\n }\n else\n {\n putShortMSB(s, strm.adler >>> 16);\n putShortMSB(s, strm.adler & 0xffff);\n }\n\n flush_pending(strm);\n /* If avail_out is zero, the application will call deflate again\n * to flush the rest.\n */\n if (s.wrap > 0) { s.wrap = -s.wrap; }\n /* write the trailer only once! */\n return s.pending !== 0 ? Z_OK$3 : Z_STREAM_END$3;\n};\n\n\nconst deflateEnd = (strm) => {\n\n if (deflateStateCheck(strm)) {\n return Z_STREAM_ERROR$2;\n }\n\n const status = strm.state.status;\n\n strm.state = null;\n\n return status === BUSY_STATE ? err(strm, Z_DATA_ERROR$2) : Z_OK$3;\n};\n\n\n/* =========================================================================\n * Initializes the compression dictionary from the given byte\n * sequence without producing any compressed output.\n */\nconst deflateSetDictionary = (strm, dictionary) => {\n\n let dictLength = dictionary.length;\n\n if (deflateStateCheck(strm)) {\n return Z_STREAM_ERROR$2;\n }\n\n const s = strm.state;\n const wrap = s.wrap;\n\n if (wrap === 2 || (wrap === 1 && s.status !== INIT_STATE) || s.lookahead) {\n return Z_STREAM_ERROR$2;\n }\n\n /* when using zlib wrappers, compute Adler-32 for provided dictionary */\n if (wrap === 1) {\n /* adler32(strm->adler, dictionary, dictLength); */\n strm.adler = adler32_1(strm.adler, dictionary, dictLength, 0);\n }\n\n s.wrap = 0; /* avoid computing Adler-32 in read_buf */\n\n /* if dictionary would fill window, just replace the history */\n if (dictLength >= s.w_size) {\n if (wrap === 0) { /* already empty otherwise */\n /*** CLEAR_HASH(s); ***/\n zero(s.head); // Fill with NIL (= 0);\n s.strstart = 0;\n s.block_start = 0;\n s.insert = 0;\n }\n /* use the tail */\n // dictionary = dictionary.slice(dictLength - s.w_size);\n let tmpDict = new Uint8Array(s.w_size);\n tmpDict.set(dictionary.subarray(dictLength - s.w_size, dictLength), 0);\n dictionary = tmpDict;\n dictLength = s.w_size;\n }\n /* insert dictionary into window and hash */\n const avail = strm.avail_in;\n const next = strm.next_in;\n const input = strm.input;\n strm.avail_in = dictLength;\n strm.next_in = 0;\n strm.input = dictionary;\n fill_window(s);\n while (s.lookahead >= MIN_MATCH) {\n let str = s.strstart;\n let n = s.lookahead - (MIN_MATCH - 1);\n do {\n /* UPDATE_HASH(s, s->ins_h, s->window[str + MIN_MATCH-1]); */\n s.ins_h = HASH(s, s.ins_h, s.window[str + MIN_MATCH - 1]);\n\n s.prev[str & s.w_mask] = s.head[s.ins_h];\n\n s.head[s.ins_h] = str;\n str++;\n } while (--n);\n s.strstart = str;\n s.lookahead = MIN_MATCH - 1;\n fill_window(s);\n }\n s.strstart += s.lookahead;\n s.block_start = s.strstart;\n s.insert = s.lookahead;\n s.lookahead = 0;\n s.match_length = s.prev_length = MIN_MATCH - 1;\n s.match_available = 0;\n strm.next_in = next;\n strm.input = input;\n strm.avail_in = avail;\n s.wrap = wrap;\n return Z_OK$3;\n};\n\n\nvar deflateInit_1 = deflateInit;\nvar deflateInit2_1 = deflateInit2;\nvar deflateReset_1 = deflateReset;\nvar deflateResetKeep_1 = deflateResetKeep;\nvar deflateSetHeader_1 = deflateSetHeader;\nvar deflate_2$1 = deflate$2;\nvar deflateEnd_1 = deflateEnd;\nvar deflateSetDictionary_1 = deflateSetDictionary;\nvar deflateInfo = 'pako deflate (from Nodeca project)';\n\n/* Not implemented\nmodule.exports.deflateBound = deflateBound;\nmodule.exports.deflateCopy = deflateCopy;\nmodule.exports.deflateGetDictionary = deflateGetDictionary;\nmodule.exports.deflateParams = deflateParams;\nmodule.exports.deflatePending = deflatePending;\nmodule.exports.deflatePrime = deflatePrime;\nmodule.exports.deflateTune = deflateTune;\n*/\n\nvar deflate_1$2 = {\n\tdeflateInit: deflateInit_1,\n\tdeflateInit2: deflateInit2_1,\n\tdeflateReset: deflateReset_1,\n\tdeflateResetKeep: deflateResetKeep_1,\n\tdeflateSetHeader: deflateSetHeader_1,\n\tdeflate: deflate_2$1,\n\tdeflateEnd: deflateEnd_1,\n\tdeflateSetDictionary: deflateSetDictionary_1,\n\tdeflateInfo: deflateInfo\n};\n\nconst _has = (obj, key) => {\n return Object.prototype.hasOwnProperty.call(obj, key);\n};\n\nvar assign = function (obj /*from1, from2, from3, ...*/) {\n const sources = Array.prototype.slice.call(arguments, 1);\n while (sources.length) {\n const source = sources.shift();\n if (!source) { continue; }\n\n if (typeof source !== 'object') {\n throw new TypeError(source + 'must be non-object');\n }\n\n for (const p in source) {\n if (_has(source, p)) {\n obj[p] = source[p];\n }\n }\n }\n\n return obj;\n};\n\n\n// Join array of chunks to single array.\nvar flattenChunks = (chunks) => {\n // calculate data length\n let len = 0;\n\n for (let i = 0, l = chunks.length; i < l; i++) {\n len += chunks[i].length;\n }\n\n // join chunks\n const result = new Uint8Array(len);\n\n for (let i = 0, pos = 0, l = chunks.length; i < l; i++) {\n let chunk = chunks[i];\n result.set(chunk, pos);\n pos += chunk.length;\n }\n\n return result;\n};\n\nvar common = {\n\tassign: assign,\n\tflattenChunks: flattenChunks\n};\n\n// String encode/decode helpers\n\n\n// Quick check if we can use fast array to bin string conversion\n//\n// - apply(Array) can fail on Android 2.2\n// - apply(Uint8Array) can fail on iOS 5.1 Safari\n//\nlet STR_APPLY_UIA_OK = true;\n\ntry { String.fromCharCode.apply(null, new Uint8Array(1)); } catch (__) { STR_APPLY_UIA_OK = false; }\n\n\n// Table with utf8 lengths (calculated by first byte of sequence)\n// Note, that 5 & 6-byte values and some 4-byte values can not be represented in JS,\n// because max possible codepoint is 0x10ffff\nconst _utf8len = new Uint8Array(256);\nfor (let q = 0; q < 256; q++) {\n _utf8len[q] = (q >= 252 ? 6 : q >= 248 ? 5 : q >= 240 ? 4 : q >= 224 ? 3 : q >= 192 ? 2 : 1);\n}\n_utf8len[254] = _utf8len[254] = 1; // Invalid sequence start\n\n\n// convert string to array (typed, when possible)\nvar string2buf = (str) => {\n if (typeof TextEncoder === 'function' && TextEncoder.prototype.encode) {\n return new TextEncoder().encode(str);\n }\n\n let buf, c, c2, m_pos, i, str_len = str.length, buf_len = 0;\n\n // count binary size\n for (m_pos = 0; m_pos < str_len; m_pos++) {\n c = str.charCodeAt(m_pos);\n if ((c & 0xfc00) === 0xd800 && (m_pos + 1 < str_len)) {\n c2 = str.charCodeAt(m_pos + 1);\n if ((c2 & 0xfc00) === 0xdc00) {\n c = 0x10000 + ((c - 0xd800) << 10) + (c2 - 0xdc00);\n m_pos++;\n }\n }\n buf_len += c < 0x80 ? 1 : c < 0x800 ? 2 : c < 0x10000 ? 3 : 4;\n }\n\n // allocate buffer\n buf = new Uint8Array(buf_len);\n\n // convert\n for (i = 0, m_pos = 0; i < buf_len; m_pos++) {\n c = str.charCodeAt(m_pos);\n if ((c & 0xfc00) === 0xd800 && (m_pos + 1 < str_len)) {\n c2 = str.charCodeAt(m_pos + 1);\n if ((c2 & 0xfc00) === 0xdc00) {\n c = 0x10000 + ((c - 0xd800) << 10) + (c2 - 0xdc00);\n m_pos++;\n }\n }\n if (c < 0x80) {\n /* one byte */\n buf[i++] = c;\n } else if (c < 0x800) {\n /* two bytes */\n buf[i++] = 0xC0 | (c >>> 6);\n buf[i++] = 0x80 | (c & 0x3f);\n } else if (c < 0x10000) {\n /* three bytes */\n buf[i++] = 0xE0 | (c >>> 12);\n buf[i++] = 0x80 | (c >>> 6 & 0x3f);\n buf[i++] = 0x80 | (c & 0x3f);\n } else {\n /* four bytes */\n buf[i++] = 0xf0 | (c >>> 18);\n buf[i++] = 0x80 | (c >>> 12 & 0x3f);\n buf[i++] = 0x80 | (c >>> 6 & 0x3f);\n buf[i++] = 0x80 | (c & 0x3f);\n }\n }\n\n return buf;\n};\n\n// Helper\nconst buf2binstring = (buf, len) => {\n // On Chrome, the arguments in a function call that are allowed is `65534`.\n // If the length of the buffer is smaller than that, we can use this optimization,\n // otherwise we will take a slower path.\n if (len < 65534) {\n if (buf.subarray && STR_APPLY_UIA_OK) {\n return String.fromCharCode.apply(null, buf.length === len ? buf : buf.subarray(0, len));\n }\n }\n\n let result = '';\n for (let i = 0; i < len; i++) {\n result += String.fromCharCode(buf[i]);\n }\n return result;\n};\n\n\n// convert array to string\nvar buf2string = (buf, max) => {\n const len = max || buf.length;\n\n if (typeof TextDecoder === 'function' && TextDecoder.prototype.decode) {\n return new TextDecoder().decode(buf.subarray(0, max));\n }\n\n let i, out;\n\n // Reserve max possible length (2 words per char)\n // NB: by unknown reasons, Array is significantly faster for\n // String.fromCharCode.apply than Uint16Array.\n const utf16buf = new Array(len * 2);\n\n for (out = 0, i = 0; i < len;) {\n let c = buf[i++];\n // quick process ascii\n if (c < 0x80) { utf16buf[out++] = c; continue; }\n\n let c_len = _utf8len[c];\n // skip 5 & 6 byte codes\n if (c_len > 4) { utf16buf[out++] = 0xfffd; i += c_len - 1; continue; }\n\n // apply mask on first byte\n c &= c_len === 2 ? 0x1f : c_len === 3 ? 0x0f : 0x07;\n // join the rest\n while (c_len > 1 && i < len) {\n c = (c << 6) | (buf[i++] & 0x3f);\n c_len--;\n }\n\n // terminated by end of string?\n if (c_len > 1) { utf16buf[out++] = 0xfffd; continue; }\n\n if (c < 0x10000) {\n utf16buf[out++] = c;\n } else {\n c -= 0x10000;\n utf16buf[out++] = 0xd800 | ((c >> 10) & 0x3ff);\n utf16buf[out++] = 0xdc00 | (c & 0x3ff);\n }\n }\n\n return buf2binstring(utf16buf, out);\n};\n\n\n// Calculate max possible position in utf8 buffer,\n// that will not break sequence. If that's not possible\n// - (very small limits) return max size as is.\n//\n// buf[] - utf8 bytes array\n// max - length limit (mandatory);\nvar utf8border = (buf, max) => {\n\n max = max || buf.length;\n if (max > buf.length) { max = buf.length; }\n\n // go back from last position, until start of sequence found\n let pos = max - 1;\n while (pos >= 0 && (buf[pos] & 0xC0) === 0x80) { pos--; }\n\n // Very small and broken sequence,\n // return max, because we should return something anyway.\n if (pos < 0) { return max; }\n\n // If we came to start of buffer - that means buffer is too small,\n // return max too.\n if (pos === 0) { return max; }\n\n return (pos + _utf8len[buf[pos]] > max) ? pos : max;\n};\n\nvar strings = {\n\tstring2buf: string2buf,\n\tbuf2string: buf2string,\n\tutf8border: utf8border\n};\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\nfunction ZStream() {\n /* next input byte */\n this.input = null; // JS specific, because we have no pointers\n this.next_in = 0;\n /* number of bytes available at input */\n this.avail_in = 0;\n /* total number of input bytes read so far */\n this.total_in = 0;\n /* next output byte should be put there */\n this.output = null; // JS specific, because we have no pointers\n this.next_out = 0;\n /* remaining free space at output */\n this.avail_out = 0;\n /* total number of bytes output so far */\n this.total_out = 0;\n /* last error message, NULL if no error */\n this.msg = ''/*Z_NULL*/;\n /* not visible by applications */\n this.state = null;\n /* best guess about the data type: binary or text */\n this.data_type = 2/*Z_UNKNOWN*/;\n /* adler32 value of the uncompressed data */\n this.adler = 0;\n}\n\nvar zstream = ZStream;\n\nconst toString$1 = Object.prototype.toString;\n\n/* Public constants ==========================================================*/\n/* ===========================================================================*/\n\nconst {\n Z_NO_FLUSH: Z_NO_FLUSH$1, Z_SYNC_FLUSH, Z_FULL_FLUSH, Z_FINISH: Z_FINISH$2,\n Z_OK: Z_OK$2, Z_STREAM_END: Z_STREAM_END$2,\n Z_DEFAULT_COMPRESSION,\n Z_DEFAULT_STRATEGY,\n Z_DEFLATED: Z_DEFLATED$1\n} = constants$2;\n\n/* ===========================================================================*/\n\n\n/**\n * class Deflate\n *\n * Generic JS-style wrapper for zlib calls. If you don't need\n * streaming behaviour - use more simple functions: [[deflate]],\n * [[deflateRaw]] and [[gzip]].\n **/\n\n/* internal\n * Deflate.chunks -> Array\n *\n * Chunks of output data, if [[Deflate#onData]] not overridden.\n **/\n\n/**\n * Deflate.result -> Uint8Array\n *\n * Compressed result, generated by default [[Deflate#onData]]\n * and [[Deflate#onEnd]] handlers. Filled after you push last chunk\n * (call [[Deflate#push]] with `Z_FINISH` / `true` param).\n **/\n\n/**\n * Deflate.err -> Number\n *\n * Error code after deflate finished. 0 (Z_OK) on success.\n * You will not need it in real life, because deflate errors\n * are possible only on wrong options or bad `onData` / `onEnd`\n * custom handlers.\n **/\n\n/**\n * Deflate.msg -> String\n *\n * Error message, if [[Deflate.err]] != 0\n **/\n\n\n/**\n * new Deflate(options)\n * - options (Object): zlib deflate options.\n *\n * Creates new deflator instance with specified params. Throws exception\n * on bad params. Supported options:\n *\n * - `level`\n * - `windowBits`\n * - `memLevel`\n * - `strategy`\n * - `dictionary`\n *\n * [http://zlib.net/manual.html#Advanced](http://zlib.net/manual.html#Advanced)\n * for more information on these.\n *\n * Additional options, for internal needs:\n *\n * - `chunkSize` - size of generated data chunks (16K by default)\n * - `raw` (Boolean) - do raw deflate\n * - `gzip` (Boolean) - create gzip wrapper\n * - `header` (Object) - custom header for gzip\n * - `text` (Boolean) - true if compressed data believed to be text\n * - `time` (Number) - modification time, unix timestamp\n * - `os` (Number) - operation system code\n * - `extra` (Array) - array of bytes with extra data (max 65536)\n * - `name` (String) - file name (binary string)\n * - `comment` (String) - comment (binary string)\n * - `hcrc` (Boolean) - true if header crc should be added\n *\n * ##### Example:\n *\n * ```javascript\n * const pako = require('pako')\n * , chunk1 = new Uint8Array([1,2,3,4,5,6,7,8,9])\n * , chunk2 = new Uint8Array([10,11,12,13,14,15,16,17,18,19]);\n *\n * const deflate = new pako.Deflate({ level: 3});\n *\n * deflate.push(chunk1, false);\n * deflate.push(chunk2, true); // true -> last chunk\n *\n * if (deflate.err) { throw new Error(deflate.err); }\n *\n * console.log(deflate.result);\n * ```\n **/\nfunction Deflate$1(options) {\n this.options = common.assign({\n level: Z_DEFAULT_COMPRESSION,\n method: Z_DEFLATED$1,\n chunkSize: 16384,\n windowBits: 15,\n memLevel: 8,\n strategy: Z_DEFAULT_STRATEGY\n }, options || {});\n\n let opt = this.options;\n\n if (opt.raw && (opt.windowBits > 0)) {\n opt.windowBits = -opt.windowBits;\n }\n\n else if (opt.gzip && (opt.windowBits > 0) && (opt.windowBits < 16)) {\n opt.windowBits += 16;\n }\n\n this.err = 0; // error code, if happens (0 = Z_OK)\n this.msg = ''; // error message\n this.ended = false; // used to avoid multiple onEnd() calls\n this.chunks = []; // chunks of compressed data\n\n this.strm = new zstream();\n this.strm.avail_out = 0;\n\n let status = deflate_1$2.deflateInit2(\n this.strm,\n opt.level,\n opt.method,\n opt.windowBits,\n opt.memLevel,\n opt.strategy\n );\n\n if (status !== Z_OK$2) {\n throw new Error(messages[status]);\n }\n\n if (opt.header) {\n deflate_1$2.deflateSetHeader(this.strm, opt.header);\n }\n\n if (opt.dictionary) {\n let dict;\n // Convert data if needed\n if (typeof opt.dictionary === 'string') {\n // If we need to compress text, change encoding to utf8.\n dict = strings.string2buf(opt.dictionary);\n } else if (toString$1.call(opt.dictionary) === '[object ArrayBuffer]') {\n dict = new Uint8Array(opt.dictionary);\n } else {\n dict = opt.dictionary;\n }\n\n status = deflate_1$2.deflateSetDictionary(this.strm, dict);\n\n if (status !== Z_OK$2) {\n throw new Error(messages[status]);\n }\n\n this._dict_set = true;\n }\n}\n\n/**\n * Deflate#push(data[, flush_mode]) -> Boolean\n * - data (Uint8Array|ArrayBuffer|String): input data. Strings will be\n * converted to utf8 byte sequence.\n * - flush_mode (Number|Boolean): 0..6 for corresponding Z_NO_FLUSH..Z_TREE modes.\n * See constants. Skipped or `false` means Z_NO_FLUSH, `true` means Z_FINISH.\n *\n * Sends input data to deflate pipe, generating [[Deflate#onData]] calls with\n * new compressed chunks. Returns `true` on success. The last data block must\n * have `flush_mode` Z_FINISH (or `true`). That will flush internal pending\n * buffers and call [[Deflate#onEnd]].\n *\n * On fail call [[Deflate#onEnd]] with error code and return false.\n *\n * ##### Example\n *\n * ```javascript\n * push(chunk, false); // push one of data chunks\n * ...\n * push(chunk, true); // push last chunk\n * ```\n **/\nDeflate$1.prototype.push = function (data, flush_mode) {\n const strm = this.strm;\n const chunkSize = this.options.chunkSize;\n let status, _flush_mode;\n\n if (this.ended) { return false; }\n\n if (flush_mode === ~~flush_mode) _flush_mode = flush_mode;\n else _flush_mode = flush_mode === true ? Z_FINISH$2 : Z_NO_FLUSH$1;\n\n // Convert data if needed\n if (typeof data === 'string') {\n // If we need to compress text, change encoding to utf8.\n strm.input = strings.string2buf(data);\n } else if (toString$1.call(data) === '[object ArrayBuffer]') {\n strm.input = new Uint8Array(data);\n } else {\n strm.input = data;\n }\n\n strm.next_in = 0;\n strm.avail_in = strm.input.length;\n\n for (;;) {\n if (strm.avail_out === 0) {\n strm.output = new Uint8Array(chunkSize);\n strm.next_out = 0;\n strm.avail_out = chunkSize;\n }\n\n // Make sure avail_out > 6 to avoid repeating markers\n if ((_flush_mode === Z_SYNC_FLUSH || _flush_mode === Z_FULL_FLUSH) && strm.avail_out <= 6) {\n this.onData(strm.output.subarray(0, strm.next_out));\n strm.avail_out = 0;\n continue;\n }\n\n status = deflate_1$2.deflate(strm, _flush_mode);\n\n // Ended => flush and finish\n if (status === Z_STREAM_END$2) {\n if (strm.next_out > 0) {\n this.onData(strm.output.subarray(0, strm.next_out));\n }\n status = deflate_1$2.deflateEnd(this.strm);\n this.onEnd(status);\n this.ended = true;\n return status === Z_OK$2;\n }\n\n // Flush if out buffer full\n if (strm.avail_out === 0) {\n this.onData(strm.output);\n continue;\n }\n\n // Flush if requested and has data\n if (_flush_mode > 0 && strm.next_out > 0) {\n this.onData(strm.output.subarray(0, strm.next_out));\n strm.avail_out = 0;\n continue;\n }\n\n if (strm.avail_in === 0) break;\n }\n\n return true;\n};\n\n\n/**\n * Deflate#onData(chunk) -> Void\n * - chunk (Uint8Array): output data.\n *\n * By default, stores data blocks in `chunks[]` property and glue\n * those in `onEnd`. Override this handler, if you need another behaviour.\n **/\nDeflate$1.prototype.onData = function (chunk) {\n this.chunks.push(chunk);\n};\n\n\n/**\n * Deflate#onEnd(status) -> Void\n * - status (Number): deflate status. 0 (Z_OK) on success,\n * other if not.\n *\n * Called once after you tell deflate that the input stream is\n * complete (Z_FINISH). By default - join collected chunks,\n * free memory and fill `results` / `err` properties.\n **/\nDeflate$1.prototype.onEnd = function (status) {\n // On success - join\n if (status === Z_OK$2) {\n this.result = common.flattenChunks(this.chunks);\n }\n this.chunks = [];\n this.err = status;\n this.msg = this.strm.msg;\n};\n\n\n/**\n * deflate(data[, options]) -> Uint8Array\n * - data (Uint8Array|ArrayBuffer|String): input data to compress.\n * - options (Object): zlib deflate options.\n *\n * Compress `data` with deflate algorithm and `options`.\n *\n * Supported options are:\n *\n * - level\n * - windowBits\n * - memLevel\n * - strategy\n * - dictionary\n *\n * [http://zlib.net/manual.html#Advanced](http://zlib.net/manual.html#Advanced)\n * for more information on these.\n *\n * Sugar (options):\n *\n * - `raw` (Boolean) - say that we work with raw stream, if you don't wish to specify\n * negative windowBits implicitly.\n *\n * ##### Example:\n *\n * ```javascript\n * const pako = require('pako')\n * const data = new Uint8Array([1,2,3,4,5,6,7,8,9]);\n *\n * console.log(pako.deflate(data));\n * ```\n **/\nfunction deflate$1(input, options) {\n const deflator = new Deflate$1(options);\n\n deflator.push(input, true);\n\n // That will never happens, if you don't cheat with options :)\n if (deflator.err) { throw deflator.msg || messages[deflator.err]; }\n\n return deflator.result;\n}\n\n\n/**\n * deflateRaw(data[, options]) -> Uint8Array\n * - data (Uint8Array|ArrayBuffer|String): input data to compress.\n * - options (Object): zlib deflate options.\n *\n * The same as [[deflate]], but creates raw data, without wrapper\n * (header and adler32 crc).\n **/\nfunction deflateRaw$1(input, options) {\n options = options || {};\n options.raw = true;\n return deflate$1(input, options);\n}\n\n\n/**\n * gzip(data[, options]) -> Uint8Array\n * - data (Uint8Array|ArrayBuffer|String): input data to compress.\n * - options (Object): zlib deflate options.\n *\n * The same as [[deflate]], but create gzip wrapper instead of\n * deflate one.\n **/\nfunction gzip$1(input, options) {\n options = options || {};\n options.gzip = true;\n return deflate$1(input, options);\n}\n\n\nvar Deflate_1$1 = Deflate$1;\nvar deflate_2 = deflate$1;\nvar deflateRaw_1$1 = deflateRaw$1;\nvar gzip_1$1 = gzip$1;\nvar constants$1 = constants$2;\n\nvar deflate_1$1 = {\n\tDeflate: Deflate_1$1,\n\tdeflate: deflate_2,\n\tdeflateRaw: deflateRaw_1$1,\n\tgzip: gzip_1$1,\n\tconstants: constants$1\n};\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\n// See state defs from inflate.js\nconst BAD$1 = 16209; /* got a data error -- remain here until reset */\nconst TYPE$1 = 16191; /* i: waiting for type bits, including last-flag bit */\n\n/*\n Decode literal, length, and distance codes and write out the resulting\n literal and match bytes until either not enough input or output is\n available, an end-of-block is encountered, or a data error is encountered.\n When large enough input and output buffers are supplied to inflate(), for\n example, a 16K input buffer and a 64K output buffer, more than 95% of the\n inflate execution time is spent in this routine.\n\n Entry assumptions:\n\n state.mode === LEN\n strm.avail_in >= 6\n strm.avail_out >= 258\n start >= strm.avail_out\n state.bits < 8\n\n On return, state.mode is one of:\n\n LEN -- ran out of enough output space or enough available input\n TYPE -- reached end of block code, inflate() to interpret next block\n BAD -- error in block data\n\n Notes:\n\n - The maximum input bits used by a length/distance pair is 15 bits for the\n length code, 5 bits for the length extra, 15 bits for the distance code,\n and 13 bits for the distance extra. This totals 48 bits, or six bytes.\n Therefore if strm.avail_in >= 6, then there is enough input to avoid\n checking for available input while decoding.\n\n - The maximum bytes that a single length/distance pair can output is 258\n bytes, which is the maximum length that can be coded. inflate_fast()\n requires strm.avail_out >= 258 for each loop to avoid checking for\n output space.\n */\nvar inffast = function inflate_fast(strm, start) {\n let _in; /* local strm.input */\n let last; /* have enough input while in < last */\n let _out; /* local strm.output */\n let beg; /* inflate()'s initial strm.output */\n let end; /* while out < end, enough space available */\n//#ifdef INFLATE_STRICT\n let dmax; /* maximum distance from zlib header */\n//#endif\n let wsize; /* window size or zero if not using window */\n let whave; /* valid bytes in the window */\n let wnext; /* window write index */\n // Use `s_window` instead `window`, avoid conflict with instrumentation tools\n let s_window; /* allocated sliding window, if wsize != 0 */\n let hold; /* local strm.hold */\n let bits; /* local strm.bits */\n let lcode; /* local strm.lencode */\n let dcode; /* local strm.distcode */\n let lmask; /* mask for first level of length codes */\n let dmask; /* mask for first level of distance codes */\n let here; /* retrieved table entry */\n let op; /* code bits, operation, extra bits, or */\n /* window position, window bytes to copy */\n let len; /* match length, unused bytes */\n let dist; /* match distance */\n let from; /* where to copy match from */\n let from_source;\n\n\n let input, output; // JS specific, because we have no pointers\n\n /* copy state to local variables */\n const state = strm.state;\n //here = state.here;\n _in = strm.next_in;\n input = strm.input;\n last = _in + (strm.avail_in - 5);\n _out = strm.next_out;\n output = strm.output;\n beg = _out - (start - strm.avail_out);\n end = _out + (strm.avail_out - 257);\n//#ifdef INFLATE_STRICT\n dmax = state.dmax;\n//#endif\n wsize = state.wsize;\n whave = state.whave;\n wnext = state.wnext;\n s_window = state.window;\n hold = state.hold;\n bits = state.bits;\n lcode = state.lencode;\n dcode = state.distcode;\n lmask = (1 << state.lenbits) - 1;\n dmask = (1 << state.distbits) - 1;\n\n\n /* decode literals and length/distances until end-of-block or not enough\n input data or output space */\n\n top:\n do {\n if (bits < 15) {\n hold += input[_in++] << bits;\n bits += 8;\n hold += input[_in++] << bits;\n bits += 8;\n }\n\n here = lcode[hold & lmask];\n\n dolen:\n for (;;) { // Goto emulation\n op = here >>> 24/*here.bits*/;\n hold >>>= op;\n bits -= op;\n op = (here >>> 16) & 0xff/*here.op*/;\n if (op === 0) { /* literal */\n //Tracevv((stderr, here.val >= 0x20 && here.val < 0x7f ?\n // \"inflate: literal '%c'\\n\" :\n // \"inflate: literal 0x%02x\\n\", here.val));\n output[_out++] = here & 0xffff/*here.val*/;\n }\n else if (op & 16) { /* length base */\n len = here & 0xffff/*here.val*/;\n op &= 15; /* number of extra bits */\n if (op) {\n if (bits < op) {\n hold += input[_in++] << bits;\n bits += 8;\n }\n len += hold & ((1 << op) - 1);\n hold >>>= op;\n bits -= op;\n }\n //Tracevv((stderr, \"inflate: length %u\\n\", len));\n if (bits < 15) {\n hold += input[_in++] << bits;\n bits += 8;\n hold += input[_in++] << bits;\n bits += 8;\n }\n here = dcode[hold & dmask];\n\n dodist:\n for (;;) { // goto emulation\n op = here >>> 24/*here.bits*/;\n hold >>>= op;\n bits -= op;\n op = (here >>> 16) & 0xff/*here.op*/;\n\n if (op & 16) { /* distance base */\n dist = here & 0xffff/*here.val*/;\n op &= 15; /* number of extra bits */\n if (bits < op) {\n hold += input[_in++] << bits;\n bits += 8;\n if (bits < op) {\n hold += input[_in++] << bits;\n bits += 8;\n }\n }\n dist += hold & ((1 << op) - 1);\n//#ifdef INFLATE_STRICT\n if (dist > dmax) {\n strm.msg = 'invalid distance too far back';\n state.mode = BAD$1;\n break top;\n }\n//#endif\n hold >>>= op;\n bits -= op;\n //Tracevv((stderr, \"inflate: distance %u\\n\", dist));\n op = _out - beg; /* max distance in output */\n if (dist > op) { /* see if copy from window */\n op = dist - op; /* distance back in window */\n if (op > whave) {\n if (state.sane) {\n strm.msg = 'invalid distance too far back';\n state.mode = BAD$1;\n break top;\n }\n\n// (!) This block is disabled in zlib defaults,\n// don't enable it for binary compatibility\n//#ifdef INFLATE_ALLOW_INVALID_DISTANCE_TOOFAR_ARRR\n// if (len <= op - whave) {\n// do {\n// output[_out++] = 0;\n// } while (--len);\n// continue top;\n// }\n// len -= op - whave;\n// do {\n// output[_out++] = 0;\n// } while (--op > whave);\n// if (op === 0) {\n// from = _out - dist;\n// do {\n// output[_out++] = output[from++];\n// } while (--len);\n// continue top;\n// }\n//#endif\n }\n from = 0; // window index\n from_source = s_window;\n if (wnext === 0) { /* very common case */\n from += wsize - op;\n if (op < len) { /* some from window */\n len -= op;\n do {\n output[_out++] = s_window[from++];\n } while (--op);\n from = _out - dist; /* rest from output */\n from_source = output;\n }\n }\n else if (wnext < op) { /* wrap around window */\n from += wsize + wnext - op;\n op -= wnext;\n if (op < len) { /* some from end of window */\n len -= op;\n do {\n output[_out++] = s_window[from++];\n } while (--op);\n from = 0;\n if (wnext < len) { /* some from start of window */\n op = wnext;\n len -= op;\n do {\n output[_out++] = s_window[from++];\n } while (--op);\n from = _out - dist; /* rest from output */\n from_source = output;\n }\n }\n }\n else { /* contiguous in window */\n from += wnext - op;\n if (op < len) { /* some from window */\n len -= op;\n do {\n output[_out++] = s_window[from++];\n } while (--op);\n from = _out - dist; /* rest from output */\n from_source = output;\n }\n }\n while (len > 2) {\n output[_out++] = from_source[from++];\n output[_out++] = from_source[from++];\n output[_out++] = from_source[from++];\n len -= 3;\n }\n if (len) {\n output[_out++] = from_source[from++];\n if (len > 1) {\n output[_out++] = from_source[from++];\n }\n }\n }\n else {\n from = _out - dist; /* copy direct from output */\n do { /* minimum length is three */\n output[_out++] = output[from++];\n output[_out++] = output[from++];\n output[_out++] = output[from++];\n len -= 3;\n } while (len > 2);\n if (len) {\n output[_out++] = output[from++];\n if (len > 1) {\n output[_out++] = output[from++];\n }\n }\n }\n }\n else if ((op & 64) === 0) { /* 2nd level distance code */\n here = dcode[(here & 0xffff)/*here.val*/ + (hold & ((1 << op) - 1))];\n continue dodist;\n }\n else {\n strm.msg = 'invalid distance code';\n state.mode = BAD$1;\n break top;\n }\n\n break; // need to emulate goto via \"continue\"\n }\n }\n else if ((op & 64) === 0) { /* 2nd level length code */\n here = lcode[(here & 0xffff)/*here.val*/ + (hold & ((1 << op) - 1))];\n continue dolen;\n }\n else if (op & 32) { /* end-of-block */\n //Tracevv((stderr, \"inflate: end of block\\n\"));\n state.mode = TYPE$1;\n break top;\n }\n else {\n strm.msg = 'invalid literal/length code';\n state.mode = BAD$1;\n break top;\n }\n\n break; // need to emulate goto via \"continue\"\n }\n } while (_in < last && _out < end);\n\n /* return unused bytes (on entry, bits < 8, so in won't go too far back) */\n len = bits >> 3;\n _in -= len;\n bits -= len << 3;\n hold &= (1 << bits) - 1;\n\n /* update state and return */\n strm.next_in = _in;\n strm.next_out = _out;\n strm.avail_in = (_in < last ? 5 + (last - _in) : 5 - (_in - last));\n strm.avail_out = (_out < end ? 257 + (end - _out) : 257 - (_out - end));\n state.hold = hold;\n state.bits = bits;\n return;\n};\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\nconst MAXBITS = 15;\nconst ENOUGH_LENS$1 = 852;\nconst ENOUGH_DISTS$1 = 592;\n//const ENOUGH = (ENOUGH_LENS+ENOUGH_DISTS);\n\nconst CODES$1 = 0;\nconst LENS$1 = 1;\nconst DISTS$1 = 2;\n\nconst lbase = new Uint16Array([ /* Length codes 257..285 base */\n 3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 15, 17, 19, 23, 27, 31,\n 35, 43, 51, 59, 67, 83, 99, 115, 131, 163, 195, 227, 258, 0, 0\n]);\n\nconst lext = new Uint8Array([ /* Length codes 257..285 extra */\n 16, 16, 16, 16, 16, 16, 16, 16, 17, 17, 17, 17, 18, 18, 18, 18,\n 19, 19, 19, 19, 20, 20, 20, 20, 21, 21, 21, 21, 16, 72, 78\n]);\n\nconst dbase = new Uint16Array([ /* Distance codes 0..29 base */\n 1, 2, 3, 4, 5, 7, 9, 13, 17, 25, 33, 49, 65, 97, 129, 193,\n 257, 385, 513, 769, 1025, 1537, 2049, 3073, 4097, 6145,\n 8193, 12289, 16385, 24577, 0, 0\n]);\n\nconst dext = new Uint8Array([ /* Distance codes 0..29 extra */\n 16, 16, 16, 16, 17, 17, 18, 18, 19, 19, 20, 20, 21, 21, 22, 22,\n 23, 23, 24, 24, 25, 25, 26, 26, 27, 27,\n 28, 28, 29, 29, 64, 64\n]);\n\nconst inflate_table = (type, lens, lens_index, codes, table, table_index, work, opts) =>\n{\n const bits = opts.bits;\n //here = opts.here; /* table entry for duplication */\n\n let len = 0; /* a code's length in bits */\n let sym = 0; /* index of code symbols */\n let min = 0, max = 0; /* minimum and maximum code lengths */\n let root = 0; /* number of index bits for root table */\n let curr = 0; /* number of index bits for current table */\n let drop = 0; /* code bits to drop for sub-table */\n let left = 0; /* number of prefix codes available */\n let used = 0; /* code entries in table used */\n let huff = 0; /* Huffman code */\n let incr; /* for incrementing code, index */\n let fill; /* index for replicating entries */\n let low; /* low bits for current root entry */\n let mask; /* mask for low root bits */\n let next; /* next available space in table */\n let base = null; /* base value table to use */\n// let shoextra; /* extra bits table to use */\n let match; /* use base and extra for symbol >= match */\n const count = new Uint16Array(MAXBITS + 1); //[MAXBITS+1]; /* number of codes of each length */\n const offs = new Uint16Array(MAXBITS + 1); //[MAXBITS+1]; /* offsets in table for each length */\n let extra = null;\n\n let here_bits, here_op, here_val;\n\n /*\n Process a set of code lengths to create a canonical Huffman code. The\n code lengths are lens[0..codes-1]. Each length corresponds to the\n symbols 0..codes-1. The Huffman code is generated by first sorting the\n symbols by length from short to long, and retaining the symbol order\n for codes with equal lengths. Then the code starts with all zero bits\n for the first code of the shortest length, and the codes are integer\n increments for the same length, and zeros are appended as the length\n increases. For the deflate format, these bits are stored backwards\n from their more natural integer increment ordering, and so when the\n decoding tables are built in the large loop below, the integer codes\n are incremented backwards.\n\n This routine assumes, but does not check, that all of the entries in\n lens[] are in the range 0..MAXBITS. The caller must assure this.\n 1..MAXBITS is interpreted as that code length. zero means that that\n symbol does not occur in this code.\n\n The codes are sorted by computing a count of codes for each length,\n creating from that a table of starting indices for each length in the\n sorted table, and then entering the symbols in order in the sorted\n table. The sorted table is work[], with that space being provided by\n the caller.\n\n The length counts are used for other purposes as well, i.e. finding\n the minimum and maximum length codes, determining if there are any\n codes at all, checking for a valid set of lengths, and looking ahead\n at length counts to determine sub-table sizes when building the\n decoding tables.\n */\n\n /* accumulate lengths for codes (assumes lens[] all in 0..MAXBITS) */\n for (len = 0; len <= MAXBITS; len++) {\n count[len] = 0;\n }\n for (sym = 0; sym < codes; sym++) {\n count[lens[lens_index + sym]]++;\n }\n\n /* bound code lengths, force root to be within code lengths */\n root = bits;\n for (max = MAXBITS; max >= 1; max--) {\n if (count[max] !== 0) { break; }\n }\n if (root > max) {\n root = max;\n }\n if (max === 0) { /* no symbols to code at all */\n //table.op[opts.table_index] = 64; //here.op = (var char)64; /* invalid code marker */\n //table.bits[opts.table_index] = 1; //here.bits = (var char)1;\n //table.val[opts.table_index++] = 0; //here.val = (var short)0;\n table[table_index++] = (1 << 24) | (64 << 16) | 0;\n\n\n //table.op[opts.table_index] = 64;\n //table.bits[opts.table_index] = 1;\n //table.val[opts.table_index++] = 0;\n table[table_index++] = (1 << 24) | (64 << 16) | 0;\n\n opts.bits = 1;\n return 0; /* no symbols, but wait for decoding to report error */\n }\n for (min = 1; min < max; min++) {\n if (count[min] !== 0) { break; }\n }\n if (root < min) {\n root = min;\n }\n\n /* check for an over-subscribed or incomplete set of lengths */\n left = 1;\n for (len = 1; len <= MAXBITS; len++) {\n left <<= 1;\n left -= count[len];\n if (left < 0) {\n return -1;\n } /* over-subscribed */\n }\n if (left > 0 && (type === CODES$1 || max !== 1)) {\n return -1; /* incomplete set */\n }\n\n /* generate offsets into symbol table for each length for sorting */\n offs[1] = 0;\n for (len = 1; len < MAXBITS; len++) {\n offs[len + 1] = offs[len] + count[len];\n }\n\n /* sort symbols by length, by symbol order within each length */\n for (sym = 0; sym < codes; sym++) {\n if (lens[lens_index + sym] !== 0) {\n work[offs[lens[lens_index + sym]]++] = sym;\n }\n }\n\n /*\n Create and fill in decoding tables. In this loop, the table being\n filled is at next and has curr index bits. The code being used is huff\n with length len. That code is converted to an index by dropping drop\n bits off of the bottom. For codes where len is less than drop + curr,\n those top drop + curr - len bits are incremented through all values to\n fill the table with replicated entries.\n\n root is the number of index bits for the root table. When len exceeds\n root, sub-tables are created pointed to by the root entry with an index\n of the low root bits of huff. This is saved in low to check for when a\n new sub-table should be started. drop is zero when the root table is\n being filled, and drop is root when sub-tables are being filled.\n\n When a new sub-table is needed, it is necessary to look ahead in the\n code lengths to determine what size sub-table is needed. The length\n counts are used for this, and so count[] is decremented as codes are\n entered in the tables.\n\n used keeps track of how many table entries have been allocated from the\n provided *table space. It is checked for LENS and DIST tables against\n the constants ENOUGH_LENS and ENOUGH_DISTS to guard against changes in\n the initial root table size constants. See the comments in inftrees.h\n for more information.\n\n sym increments through all symbols, and the loop terminates when\n all codes of length max, i.e. all codes, have been processed. This\n routine permits incomplete codes, so another loop after this one fills\n in the rest of the decoding tables with invalid code markers.\n */\n\n /* set up for code type */\n // poor man optimization - use if-else instead of switch,\n // to avoid deopts in old v8\n if (type === CODES$1) {\n base = extra = work; /* dummy value--not used */\n match = 20;\n\n } else if (type === LENS$1) {\n base = lbase;\n extra = lext;\n match = 257;\n\n } else { /* DISTS */\n base = dbase;\n extra = dext;\n match = 0;\n }\n\n /* initialize opts for loop */\n huff = 0; /* starting code */\n sym = 0; /* starting code symbol */\n len = min; /* starting code length */\n next = table_index; /* current table to fill in */\n curr = root; /* current table index bits */\n drop = 0; /* current bits to drop from code for index */\n low = -1; /* trigger new sub-table when len > root */\n used = 1 << root; /* use root table entries */\n mask = used - 1; /* mask for comparing low */\n\n /* check available table space */\n if ((type === LENS$1 && used > ENOUGH_LENS$1) ||\n (type === DISTS$1 && used > ENOUGH_DISTS$1)) {\n return 1;\n }\n\n /* process all codes and make table entries */\n for (;;) {\n /* create table entry */\n here_bits = len - drop;\n if (work[sym] + 1 < match) {\n here_op = 0;\n here_val = work[sym];\n }\n else if (work[sym] >= match) {\n here_op = extra[work[sym] - match];\n here_val = base[work[sym] - match];\n }\n else {\n here_op = 32 + 64; /* end of block */\n here_val = 0;\n }\n\n /* replicate for those indices with low len bits equal to huff */\n incr = 1 << (len - drop);\n fill = 1 << curr;\n min = fill; /* save offset to next table */\n do {\n fill -= incr;\n table[next + (huff >> drop) + fill] = (here_bits << 24) | (here_op << 16) | here_val |0;\n } while (fill !== 0);\n\n /* backwards increment the len-bit code huff */\n incr = 1 << (len - 1);\n while (huff & incr) {\n incr >>= 1;\n }\n if (incr !== 0) {\n huff &= incr - 1;\n huff += incr;\n } else {\n huff = 0;\n }\n\n /* go to next symbol, update count, len */\n sym++;\n if (--count[len] === 0) {\n if (len === max) { break; }\n len = lens[lens_index + work[sym]];\n }\n\n /* create new sub-table if needed */\n if (len > root && (huff & mask) !== low) {\n /* if first time, transition to sub-tables */\n if (drop === 0) {\n drop = root;\n }\n\n /* increment past last table */\n next += min; /* here min is 1 << curr */\n\n /* determine length of next table */\n curr = len - drop;\n left = 1 << curr;\n while (curr + drop < max) {\n left -= count[curr + drop];\n if (left <= 0) { break; }\n curr++;\n left <<= 1;\n }\n\n /* check for enough space */\n used += 1 << curr;\n if ((type === LENS$1 && used > ENOUGH_LENS$1) ||\n (type === DISTS$1 && used > ENOUGH_DISTS$1)) {\n return 1;\n }\n\n /* point entry in root table to sub-table */\n low = huff & mask;\n /*table.op[low] = curr;\n table.bits[low] = root;\n table.val[low] = next - opts.table_index;*/\n table[low] = (root << 24) | (curr << 16) | (next - table_index) |0;\n }\n }\n\n /* fill in remaining table entry if code is incomplete (guaranteed to have\n at most one remaining entry, since if the code is incomplete, the\n maximum code length that was allowed to get this far is one bit) */\n if (huff !== 0) {\n //table.op[next + huff] = 64; /* invalid code marker */\n //table.bits[next + huff] = len - drop;\n //table.val[next + huff] = 0;\n table[next + huff] = ((len - drop) << 24) | (64 << 16) |0;\n }\n\n /* set return parameters */\n //opts.table_index += used;\n opts.bits = root;\n return 0;\n};\n\n\nvar inftrees = inflate_table;\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\n\n\n\n\n\nconst CODES = 0;\nconst LENS = 1;\nconst DISTS = 2;\n\n/* Public constants ==========================================================*/\n/* ===========================================================================*/\n\nconst {\n Z_FINISH: Z_FINISH$1, Z_BLOCK, Z_TREES,\n Z_OK: Z_OK$1, Z_STREAM_END: Z_STREAM_END$1, Z_NEED_DICT: Z_NEED_DICT$1, Z_STREAM_ERROR: Z_STREAM_ERROR$1, Z_DATA_ERROR: Z_DATA_ERROR$1, Z_MEM_ERROR: Z_MEM_ERROR$1, Z_BUF_ERROR,\n Z_DEFLATED\n} = constants$2;\n\n\n/* STATES ====================================================================*/\n/* ===========================================================================*/\n\n\nconst HEAD = 16180; /* i: waiting for magic header */\nconst FLAGS = 16181; /* i: waiting for method and flags (gzip) */\nconst TIME = 16182; /* i: waiting for modification time (gzip) */\nconst OS = 16183; /* i: waiting for extra flags and operating system (gzip) */\nconst EXLEN = 16184; /* i: waiting for extra length (gzip) */\nconst EXTRA = 16185; /* i: waiting for extra bytes (gzip) */\nconst NAME = 16186; /* i: waiting for end of file name (gzip) */\nconst COMMENT = 16187; /* i: waiting for end of comment (gzip) */\nconst HCRC = 16188; /* i: waiting for header crc (gzip) */\nconst DICTID = 16189; /* i: waiting for dictionary check value */\nconst DICT = 16190; /* waiting for inflateSetDictionary() call */\nconst TYPE = 16191; /* i: waiting for type bits, including last-flag bit */\nconst TYPEDO = 16192; /* i: same, but skip check to exit inflate on new block */\nconst STORED = 16193; /* i: waiting for stored size (length and complement) */\nconst COPY_ = 16194; /* i/o: same as COPY below, but only first time in */\nconst COPY = 16195; /* i/o: waiting for input or output to copy stored block */\nconst TABLE = 16196; /* i: waiting for dynamic block table lengths */\nconst LENLENS = 16197; /* i: waiting for code length code lengths */\nconst CODELENS = 16198; /* i: waiting for length/lit and distance code lengths */\nconst LEN_ = 16199; /* i: same as LEN below, but only first time in */\nconst LEN = 16200; /* i: waiting for length/lit/eob code */\nconst LENEXT = 16201; /* i: waiting for length extra bits */\nconst DIST = 16202; /* i: waiting for distance code */\nconst DISTEXT = 16203; /* i: waiting for distance extra bits */\nconst MATCH = 16204; /* o: waiting for output space to copy string */\nconst LIT = 16205; /* o: waiting for output space to write literal */\nconst CHECK = 16206; /* i: waiting for 32-bit check value */\nconst LENGTH = 16207; /* i: waiting for 32-bit length (gzip) */\nconst DONE = 16208; /* finished check, done -- remain here until reset */\nconst BAD = 16209; /* got a data error -- remain here until reset */\nconst MEM = 16210; /* got an inflate() memory error -- remain here until reset */\nconst SYNC = 16211; /* looking for synchronization bytes to restart inflate() */\n\n/* ===========================================================================*/\n\n\n\nconst ENOUGH_LENS = 852;\nconst ENOUGH_DISTS = 592;\n//const ENOUGH = (ENOUGH_LENS+ENOUGH_DISTS);\n\nconst MAX_WBITS = 15;\n/* 32K LZ77 window */\nconst DEF_WBITS = MAX_WBITS;\n\n\nconst zswap32 = (q) => {\n\n return (((q >>> 24) & 0xff) +\n ((q >>> 8) & 0xff00) +\n ((q & 0xff00) << 8) +\n ((q & 0xff) << 24));\n};\n\n\nfunction InflateState() {\n this.strm = null; /* pointer back to this zlib stream */\n this.mode = 0; /* current inflate mode */\n this.last = false; /* true if processing last block */\n this.wrap = 0; /* bit 0 true for zlib, bit 1 true for gzip,\n bit 2 true to validate check value */\n this.havedict = false; /* true if dictionary provided */\n this.flags = 0; /* gzip header method and flags (0 if zlib), or\n -1 if raw or no header yet */\n this.dmax = 0; /* zlib header max distance (INFLATE_STRICT) */\n this.check = 0; /* protected copy of check value */\n this.total = 0; /* protected copy of output count */\n // TODO: may be {}\n this.head = null; /* where to save gzip header information */\n\n /* sliding window */\n this.wbits = 0; /* log base 2 of requested window size */\n this.wsize = 0; /* window size or zero if not using window */\n this.whave = 0; /* valid bytes in the window */\n this.wnext = 0; /* window write index */\n this.window = null; /* allocated sliding window, if needed */\n\n /* bit accumulator */\n this.hold = 0; /* input bit accumulator */\n this.bits = 0; /* number of bits in \"in\" */\n\n /* for string and stored block copying */\n this.length = 0; /* literal or length of data to copy */\n this.offset = 0; /* distance back to copy string from */\n\n /* for table and code decoding */\n this.extra = 0; /* extra bits needed */\n\n /* fixed and dynamic code tables */\n this.lencode = null; /* starting table for length/literal codes */\n this.distcode = null; /* starting table for distance codes */\n this.lenbits = 0; /* index bits for lencode */\n this.distbits = 0; /* index bits for distcode */\n\n /* dynamic table building */\n this.ncode = 0; /* number of code length code lengths */\n this.nlen = 0; /* number of length code lengths */\n this.ndist = 0; /* number of distance code lengths */\n this.have = 0; /* number of code lengths in lens[] */\n this.next = null; /* next available space in codes[] */\n\n this.lens = new Uint16Array(320); /* temporary storage for code lengths */\n this.work = new Uint16Array(288); /* work area for code table building */\n\n /*\n because we don't have pointers in js, we use lencode and distcode directly\n as buffers so we don't need codes\n */\n //this.codes = new Int32Array(ENOUGH); /* space for code tables */\n this.lendyn = null; /* dynamic table for length/literal codes (JS specific) */\n this.distdyn = null; /* dynamic table for distance codes (JS specific) */\n this.sane = 0; /* if false, allow invalid distance too far */\n this.back = 0; /* bits back of last unprocessed length/lit */\n this.was = 0; /* initial length of match */\n}\n\n\nconst inflateStateCheck = (strm) => {\n\n if (!strm) {\n return 1;\n }\n const state = strm.state;\n if (!state || state.strm !== strm ||\n state.mode < HEAD || state.mode > SYNC) {\n return 1;\n }\n return 0;\n};\n\n\nconst inflateResetKeep = (strm) => {\n\n if (inflateStateCheck(strm)) { return Z_STREAM_ERROR$1; }\n const state = strm.state;\n strm.total_in = strm.total_out = state.total = 0;\n strm.msg = ''; /*Z_NULL*/\n if (state.wrap) { /* to support ill-conceived Java test suite */\n strm.adler = state.wrap & 1;\n }\n state.mode = HEAD;\n state.last = 0;\n state.havedict = 0;\n state.flags = -1;\n state.dmax = 32768;\n state.head = null/*Z_NULL*/;\n state.hold = 0;\n state.bits = 0;\n //state.lencode = state.distcode = state.next = state.codes;\n state.lencode = state.lendyn = new Int32Array(ENOUGH_LENS);\n state.distcode = state.distdyn = new Int32Array(ENOUGH_DISTS);\n\n state.sane = 1;\n state.back = -1;\n //Tracev((stderr, \"inflate: reset\\n\"));\n return Z_OK$1;\n};\n\n\nconst inflateReset = (strm) => {\n\n if (inflateStateCheck(strm)) { return Z_STREAM_ERROR$1; }\n const state = strm.state;\n state.wsize = 0;\n state.whave = 0;\n state.wnext = 0;\n return inflateResetKeep(strm);\n\n};\n\n\nconst inflateReset2 = (strm, windowBits) => {\n let wrap;\n\n /* get the state */\n if (inflateStateCheck(strm)) { return Z_STREAM_ERROR$1; }\n const state = strm.state;\n\n /* extract wrap request from windowBits parameter */\n if (windowBits < 0) {\n wrap = 0;\n windowBits = -windowBits;\n }\n else {\n wrap = (windowBits >> 4) + 5;\n if (windowBits < 48) {\n windowBits &= 15;\n }\n }\n\n /* set number of window bits, free window if different */\n if (windowBits && (windowBits < 8 || windowBits > 15)) {\n return Z_STREAM_ERROR$1;\n }\n if (state.window !== null && state.wbits !== windowBits) {\n state.window = null;\n }\n\n /* update state and reset the rest of it */\n state.wrap = wrap;\n state.wbits = windowBits;\n return inflateReset(strm);\n};\n\n\nconst inflateInit2 = (strm, windowBits) => {\n\n if (!strm) { return Z_STREAM_ERROR$1; }\n //strm.msg = Z_NULL; /* in case we return an error */\n\n const state = new InflateState();\n\n //if (state === Z_NULL) return Z_MEM_ERROR;\n //Tracev((stderr, \"inflate: allocated\\n\"));\n strm.state = state;\n state.strm = strm;\n state.window = null/*Z_NULL*/;\n state.mode = HEAD; /* to pass state test in inflateReset2() */\n const ret = inflateReset2(strm, windowBits);\n if (ret !== Z_OK$1) {\n strm.state = null/*Z_NULL*/;\n }\n return ret;\n};\n\n\nconst inflateInit = (strm) => {\n\n return inflateInit2(strm, DEF_WBITS);\n};\n\n\n/*\n Return state with length and distance decoding tables and index sizes set to\n fixed code decoding. Normally this returns fixed tables from inffixed.h.\n If BUILDFIXED is defined, then instead this routine builds the tables the\n first time it's called, and returns those tables the first time and\n thereafter. This reduces the size of the code by about 2K bytes, in\n exchange for a little execution time. However, BUILDFIXED should not be\n used for threaded applications, since the rewriting of the tables and virgin\n may not be thread-safe.\n */\nlet virgin = true;\n\nlet lenfix, distfix; // We have no pointers in JS, so keep tables separate\n\n\nconst fixedtables = (state) => {\n\n /* build fixed huffman tables if first call (may not be thread safe) */\n if (virgin) {\n lenfix = new Int32Array(512);\n distfix = new Int32Array(32);\n\n /* literal/length table */\n let sym = 0;\n while (sym < 144) { state.lens[sym++] = 8; }\n while (sym < 256) { state.lens[sym++] = 9; }\n while (sym < 280) { state.lens[sym++] = 7; }\n while (sym < 288) { state.lens[sym++] = 8; }\n\n inftrees(LENS, state.lens, 0, 288, lenfix, 0, state.work, { bits: 9 });\n\n /* distance table */\n sym = 0;\n while (sym < 32) { state.lens[sym++] = 5; }\n\n inftrees(DISTS, state.lens, 0, 32, distfix, 0, state.work, { bits: 5 });\n\n /* do this just once */\n virgin = false;\n }\n\n state.lencode = lenfix;\n state.lenbits = 9;\n state.distcode = distfix;\n state.distbits = 5;\n};\n\n\n/*\n Update the window with the last wsize (normally 32K) bytes written before\n returning. If window does not exist yet, create it. This is only called\n when a window is already in use, or when output has been written during this\n inflate call, but the end of the deflate stream has not been reached yet.\n It is also called to create a window for dictionary data when a dictionary\n is loaded.\n\n Providing output buffers larger than 32K to inflate() should provide a speed\n advantage, since only the last 32K of output is copied to the sliding window\n upon return from inflate(), and since all distances after the first 32K of\n output will fall in the output data, making match copies simpler and faster.\n The advantage may be dependent on the size of the processor's data caches.\n */\nconst updatewindow = (strm, src, end, copy) => {\n\n let dist;\n const state = strm.state;\n\n /* if it hasn't been done already, allocate space for the window */\n if (state.window === null) {\n state.wsize = 1 << state.wbits;\n state.wnext = 0;\n state.whave = 0;\n\n state.window = new Uint8Array(state.wsize);\n }\n\n /* copy state->wsize or less output bytes into the circular window */\n if (copy >= state.wsize) {\n state.window.set(src.subarray(end - state.wsize, end), 0);\n state.wnext = 0;\n state.whave = state.wsize;\n }\n else {\n dist = state.wsize - state.wnext;\n if (dist > copy) {\n dist = copy;\n }\n //zmemcpy(state->window + state->wnext, end - copy, dist);\n state.window.set(src.subarray(end - copy, end - copy + dist), state.wnext);\n copy -= dist;\n if (copy) {\n //zmemcpy(state->window, end - copy, copy);\n state.window.set(src.subarray(end - copy, end), 0);\n state.wnext = copy;\n state.whave = state.wsize;\n }\n else {\n state.wnext += dist;\n if (state.wnext === state.wsize) { state.wnext = 0; }\n if (state.whave < state.wsize) { state.whave += dist; }\n }\n }\n return 0;\n};\n\n\nconst inflate$2 = (strm, flush) => {\n\n let state;\n let input, output; // input/output buffers\n let next; /* next input INDEX */\n let put; /* next output INDEX */\n let have, left; /* available input and output */\n let hold; /* bit buffer */\n let bits; /* bits in bit buffer */\n let _in, _out; /* save starting available input and output */\n let copy; /* number of stored or match bytes to copy */\n let from; /* where to copy match bytes from */\n let from_source;\n let here = 0; /* current decoding table entry */\n let here_bits, here_op, here_val; // paked \"here\" denormalized (JS specific)\n //let last; /* parent table entry */\n let last_bits, last_op, last_val; // paked \"last\" denormalized (JS specific)\n let len; /* length to copy for repeats, bits to drop */\n let ret; /* return code */\n const hbuf = new Uint8Array(4); /* buffer for gzip header crc calculation */\n let opts;\n\n let n; // temporary variable for NEED_BITS\n\n const order = /* permutation of code lengths */\n new Uint8Array([ 16, 17, 18, 0, 8, 7, 9, 6, 10, 5, 11, 4, 12, 3, 13, 2, 14, 1, 15 ]);\n\n\n if (inflateStateCheck(strm) || !strm.output ||\n (!strm.input && strm.avail_in !== 0)) {\n return Z_STREAM_ERROR$1;\n }\n\n state = strm.state;\n if (state.mode === TYPE) { state.mode = TYPEDO; } /* skip check */\n\n\n //--- LOAD() ---\n put = strm.next_out;\n output = strm.output;\n left = strm.avail_out;\n next = strm.next_in;\n input = strm.input;\n have = strm.avail_in;\n hold = state.hold;\n bits = state.bits;\n //---\n\n _in = have;\n _out = left;\n ret = Z_OK$1;\n\n inf_leave: // goto emulation\n for (;;) {\n switch (state.mode) {\n case HEAD:\n if (state.wrap === 0) {\n state.mode = TYPEDO;\n break;\n }\n //=== NEEDBITS(16);\n while (bits < 16) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n if ((state.wrap & 2) && hold === 0x8b1f) { /* gzip header */\n if (state.wbits === 0) {\n state.wbits = 15;\n }\n state.check = 0/*crc32(0L, Z_NULL, 0)*/;\n //=== CRC2(state.check, hold);\n hbuf[0] = hold & 0xff;\n hbuf[1] = (hold >>> 8) & 0xff;\n state.check = crc32_1(state.check, hbuf, 2, 0);\n //===//\n\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n state.mode = FLAGS;\n break;\n }\n if (state.head) {\n state.head.done = false;\n }\n if (!(state.wrap & 1) || /* check if zlib header allowed */\n (((hold & 0xff)/*BITS(8)*/ << 8) + (hold >> 8)) % 31) {\n strm.msg = 'incorrect header check';\n state.mode = BAD;\n break;\n }\n if ((hold & 0x0f)/*BITS(4)*/ !== Z_DEFLATED) {\n strm.msg = 'unknown compression method';\n state.mode = BAD;\n break;\n }\n //--- DROPBITS(4) ---//\n hold >>>= 4;\n bits -= 4;\n //---//\n len = (hold & 0x0f)/*BITS(4)*/ + 8;\n if (state.wbits === 0) {\n state.wbits = len;\n }\n if (len > 15 || len > state.wbits) {\n strm.msg = 'invalid window size';\n state.mode = BAD;\n break;\n }\n\n // !!! pako patch. Force use `options.windowBits` if passed.\n // Required to always use max window size by default.\n state.dmax = 1 << state.wbits;\n //state.dmax = 1 << len;\n\n state.flags = 0; /* indicate zlib header */\n //Tracev((stderr, \"inflate: zlib header ok\\n\"));\n strm.adler = state.check = 1/*adler32(0L, Z_NULL, 0)*/;\n state.mode = hold & 0x200 ? DICTID : TYPE;\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n break;\n case FLAGS:\n //=== NEEDBITS(16); */\n while (bits < 16) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n state.flags = hold;\n if ((state.flags & 0xff) !== Z_DEFLATED) {\n strm.msg = 'unknown compression method';\n state.mode = BAD;\n break;\n }\n if (state.flags & 0xe000) {\n strm.msg = 'unknown header flags set';\n state.mode = BAD;\n break;\n }\n if (state.head) {\n state.head.text = ((hold >> 8) & 1);\n }\n if ((state.flags & 0x0200) && (state.wrap & 4)) {\n //=== CRC2(state.check, hold);\n hbuf[0] = hold & 0xff;\n hbuf[1] = (hold >>> 8) & 0xff;\n state.check = crc32_1(state.check, hbuf, 2, 0);\n //===//\n }\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n state.mode = TIME;\n /* falls through */\n case TIME:\n //=== NEEDBITS(32); */\n while (bits < 32) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n if (state.head) {\n state.head.time = hold;\n }\n if ((state.flags & 0x0200) && (state.wrap & 4)) {\n //=== CRC4(state.check, hold)\n hbuf[0] = hold & 0xff;\n hbuf[1] = (hold >>> 8) & 0xff;\n hbuf[2] = (hold >>> 16) & 0xff;\n hbuf[3] = (hold >>> 24) & 0xff;\n state.check = crc32_1(state.check, hbuf, 4, 0);\n //===\n }\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n state.mode = OS;\n /* falls through */\n case OS:\n //=== NEEDBITS(16); */\n while (bits < 16) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n if (state.head) {\n state.head.xflags = (hold & 0xff);\n state.head.os = (hold >> 8);\n }\n if ((state.flags & 0x0200) && (state.wrap & 4)) {\n //=== CRC2(state.check, hold);\n hbuf[0] = hold & 0xff;\n hbuf[1] = (hold >>> 8) & 0xff;\n state.check = crc32_1(state.check, hbuf, 2, 0);\n //===//\n }\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n state.mode = EXLEN;\n /* falls through */\n case EXLEN:\n if (state.flags & 0x0400) {\n //=== NEEDBITS(16); */\n while (bits < 16) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n state.length = hold;\n if (state.head) {\n state.head.extra_len = hold;\n }\n if ((state.flags & 0x0200) && (state.wrap & 4)) {\n //=== CRC2(state.check, hold);\n hbuf[0] = hold & 0xff;\n hbuf[1] = (hold >>> 8) & 0xff;\n state.check = crc32_1(state.check, hbuf, 2, 0);\n //===//\n }\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n }\n else if (state.head) {\n state.head.extra = null/*Z_NULL*/;\n }\n state.mode = EXTRA;\n /* falls through */\n case EXTRA:\n if (state.flags & 0x0400) {\n copy = state.length;\n if (copy > have) { copy = have; }\n if (copy) {\n if (state.head) {\n len = state.head.extra_len - state.length;\n if (!state.head.extra) {\n // Use untyped array for more convenient processing later\n state.head.extra = new Uint8Array(state.head.extra_len);\n }\n state.head.extra.set(\n input.subarray(\n next,\n // extra field is limited to 65536 bytes\n // - no need for additional size check\n next + copy\n ),\n /*len + copy > state.head.extra_max - len ? state.head.extra_max : copy,*/\n len\n );\n //zmemcpy(state.head.extra + len, next,\n // len + copy > state.head.extra_max ?\n // state.head.extra_max - len : copy);\n }\n if ((state.flags & 0x0200) && (state.wrap & 4)) {\n state.check = crc32_1(state.check, input, copy, next);\n }\n have -= copy;\n next += copy;\n state.length -= copy;\n }\n if (state.length) { break inf_leave; }\n }\n state.length = 0;\n state.mode = NAME;\n /* falls through */\n case NAME:\n if (state.flags & 0x0800) {\n if (have === 0) { break inf_leave; }\n copy = 0;\n do {\n // TODO: 2 or 1 bytes?\n len = input[next + copy++];\n /* use constant limit because in js we should not preallocate memory */\n if (state.head && len &&\n (state.length < 65536 /*state.head.name_max*/)) {\n state.head.name += String.fromCharCode(len);\n }\n } while (len && copy < have);\n\n if ((state.flags & 0x0200) && (state.wrap & 4)) {\n state.check = crc32_1(state.check, input, copy, next);\n }\n have -= copy;\n next += copy;\n if (len) { break inf_leave; }\n }\n else if (state.head) {\n state.head.name = null;\n }\n state.length = 0;\n state.mode = COMMENT;\n /* falls through */\n case COMMENT:\n if (state.flags & 0x1000) {\n if (have === 0) { break inf_leave; }\n copy = 0;\n do {\n len = input[next + copy++];\n /* use constant limit because in js we should not preallocate memory */\n if (state.head && len &&\n (state.length < 65536 /*state.head.comm_max*/)) {\n state.head.comment += String.fromCharCode(len);\n }\n } while (len && copy < have);\n if ((state.flags & 0x0200) && (state.wrap & 4)) {\n state.check = crc32_1(state.check, input, copy, next);\n }\n have -= copy;\n next += copy;\n if (len) { break inf_leave; }\n }\n else if (state.head) {\n state.head.comment = null;\n }\n state.mode = HCRC;\n /* falls through */\n case HCRC:\n if (state.flags & 0x0200) {\n //=== NEEDBITS(16); */\n while (bits < 16) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n if ((state.wrap & 4) && hold !== (state.check & 0xffff)) {\n strm.msg = 'header crc mismatch';\n state.mode = BAD;\n break;\n }\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n }\n if (state.head) {\n state.head.hcrc = ((state.flags >> 9) & 1);\n state.head.done = true;\n }\n strm.adler = state.check = 0;\n state.mode = TYPE;\n break;\n case DICTID:\n //=== NEEDBITS(32); */\n while (bits < 32) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n strm.adler = state.check = zswap32(hold);\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n state.mode = DICT;\n /* falls through */\n case DICT:\n if (state.havedict === 0) {\n //--- RESTORE() ---\n strm.next_out = put;\n strm.avail_out = left;\n strm.next_in = next;\n strm.avail_in = have;\n state.hold = hold;\n state.bits = bits;\n //---\n return Z_NEED_DICT$1;\n }\n strm.adler = state.check = 1/*adler32(0L, Z_NULL, 0)*/;\n state.mode = TYPE;\n /* falls through */\n case TYPE:\n if (flush === Z_BLOCK || flush === Z_TREES) { break inf_leave; }\n /* falls through */\n case TYPEDO:\n if (state.last) {\n //--- BYTEBITS() ---//\n hold >>>= bits & 7;\n bits -= bits & 7;\n //---//\n state.mode = CHECK;\n break;\n }\n //=== NEEDBITS(3); */\n while (bits < 3) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n state.last = (hold & 0x01)/*BITS(1)*/;\n //--- DROPBITS(1) ---//\n hold >>>= 1;\n bits -= 1;\n //---//\n\n switch ((hold & 0x03)/*BITS(2)*/) {\n case 0: /* stored block */\n //Tracev((stderr, \"inflate: stored block%s\\n\",\n // state.last ? \" (last)\" : \"\"));\n state.mode = STORED;\n break;\n case 1: /* fixed block */\n fixedtables(state);\n //Tracev((stderr, \"inflate: fixed codes block%s\\n\",\n // state.last ? \" (last)\" : \"\"));\n state.mode = LEN_; /* decode codes */\n if (flush === Z_TREES) {\n //--- DROPBITS(2) ---//\n hold >>>= 2;\n bits -= 2;\n //---//\n break inf_leave;\n }\n break;\n case 2: /* dynamic block */\n //Tracev((stderr, \"inflate: dynamic codes block%s\\n\",\n // state.last ? \" (last)\" : \"\"));\n state.mode = TABLE;\n break;\n case 3:\n strm.msg = 'invalid block type';\n state.mode = BAD;\n }\n //--- DROPBITS(2) ---//\n hold >>>= 2;\n bits -= 2;\n //---//\n break;\n case STORED:\n //--- BYTEBITS() ---// /* go to byte boundary */\n hold >>>= bits & 7;\n bits -= bits & 7;\n //---//\n //=== NEEDBITS(32); */\n while (bits < 32) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n if ((hold & 0xffff) !== ((hold >>> 16) ^ 0xffff)) {\n strm.msg = 'invalid stored block lengths';\n state.mode = BAD;\n break;\n }\n state.length = hold & 0xffff;\n //Tracev((stderr, \"inflate: stored length %u\\n\",\n // state.length));\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n state.mode = COPY_;\n if (flush === Z_TREES) { break inf_leave; }\n /* falls through */\n case COPY_:\n state.mode = COPY;\n /* falls through */\n case COPY:\n copy = state.length;\n if (copy) {\n if (copy > have) { copy = have; }\n if (copy > left) { copy = left; }\n if (copy === 0) { break inf_leave; }\n //--- zmemcpy(put, next, copy); ---\n output.set(input.subarray(next, next + copy), put);\n //---//\n have -= copy;\n next += copy;\n left -= copy;\n put += copy;\n state.length -= copy;\n break;\n }\n //Tracev((stderr, \"inflate: stored end\\n\"));\n state.mode = TYPE;\n break;\n case TABLE:\n //=== NEEDBITS(14); */\n while (bits < 14) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n state.nlen = (hold & 0x1f)/*BITS(5)*/ + 257;\n //--- DROPBITS(5) ---//\n hold >>>= 5;\n bits -= 5;\n //---//\n state.ndist = (hold & 0x1f)/*BITS(5)*/ + 1;\n //--- DROPBITS(5) ---//\n hold >>>= 5;\n bits -= 5;\n //---//\n state.ncode = (hold & 0x0f)/*BITS(4)*/ + 4;\n //--- DROPBITS(4) ---//\n hold >>>= 4;\n bits -= 4;\n //---//\n//#ifndef PKZIP_BUG_WORKAROUND\n if (state.nlen > 286 || state.ndist > 30) {\n strm.msg = 'too many length or distance symbols';\n state.mode = BAD;\n break;\n }\n//#endif\n //Tracev((stderr, \"inflate: table sizes ok\\n\"));\n state.have = 0;\n state.mode = LENLENS;\n /* falls through */\n case LENLENS:\n while (state.have < state.ncode) {\n //=== NEEDBITS(3);\n while (bits < 3) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n state.lens[order[state.have++]] = (hold & 0x07);//BITS(3);\n //--- DROPBITS(3) ---//\n hold >>>= 3;\n bits -= 3;\n //---//\n }\n while (state.have < 19) {\n state.lens[order[state.have++]] = 0;\n }\n // We have separate tables & no pointers. 2 commented lines below not needed.\n //state.next = state.codes;\n //state.lencode = state.next;\n // Switch to use dynamic table\n state.lencode = state.lendyn;\n state.lenbits = 7;\n\n opts = { bits: state.lenbits };\n ret = inftrees(CODES, state.lens, 0, 19, state.lencode, 0, state.work, opts);\n state.lenbits = opts.bits;\n\n if (ret) {\n strm.msg = 'invalid code lengths set';\n state.mode = BAD;\n break;\n }\n //Tracev((stderr, \"inflate: code lengths ok\\n\"));\n state.have = 0;\n state.mode = CODELENS;\n /* falls through */\n case CODELENS:\n while (state.have < state.nlen + state.ndist) {\n for (;;) {\n here = state.lencode[hold & ((1 << state.lenbits) - 1)];/*BITS(state.lenbits)*/\n here_bits = here >>> 24;\n here_op = (here >>> 16) & 0xff;\n here_val = here & 0xffff;\n\n if ((here_bits) <= bits) { break; }\n //--- PULLBYTE() ---//\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n //---//\n }\n if (here_val < 16) {\n //--- DROPBITS(here.bits) ---//\n hold >>>= here_bits;\n bits -= here_bits;\n //---//\n state.lens[state.have++] = here_val;\n }\n else {\n if (here_val === 16) {\n //=== NEEDBITS(here.bits + 2);\n n = here_bits + 2;\n while (bits < n) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n //--- DROPBITS(here.bits) ---//\n hold >>>= here_bits;\n bits -= here_bits;\n //---//\n if (state.have === 0) {\n strm.msg = 'invalid bit length repeat';\n state.mode = BAD;\n break;\n }\n len = state.lens[state.have - 1];\n copy = 3 + (hold & 0x03);//BITS(2);\n //--- DROPBITS(2) ---//\n hold >>>= 2;\n bits -= 2;\n //---//\n }\n else if (here_val === 17) {\n //=== NEEDBITS(here.bits + 3);\n n = here_bits + 3;\n while (bits < n) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n //--- DROPBITS(here.bits) ---//\n hold >>>= here_bits;\n bits -= here_bits;\n //---//\n len = 0;\n copy = 3 + (hold & 0x07);//BITS(3);\n //--- DROPBITS(3) ---//\n hold >>>= 3;\n bits -= 3;\n //---//\n }\n else {\n //=== NEEDBITS(here.bits + 7);\n n = here_bits + 7;\n while (bits < n) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n //--- DROPBITS(here.bits) ---//\n hold >>>= here_bits;\n bits -= here_bits;\n //---//\n len = 0;\n copy = 11 + (hold & 0x7f);//BITS(7);\n //--- DROPBITS(7) ---//\n hold >>>= 7;\n bits -= 7;\n //---//\n }\n if (state.have + copy > state.nlen + state.ndist) {\n strm.msg = 'invalid bit length repeat';\n state.mode = BAD;\n break;\n }\n while (copy--) {\n state.lens[state.have++] = len;\n }\n }\n }\n\n /* handle error breaks in while */\n if (state.mode === BAD) { break; }\n\n /* check for end-of-block code (better have one) */\n if (state.lens[256] === 0) {\n strm.msg = 'invalid code -- missing end-of-block';\n state.mode = BAD;\n break;\n }\n\n /* build code tables -- note: do not change the lenbits or distbits\n values here (9 and 6) without reading the comments in inftrees.h\n concerning the ENOUGH constants, which depend on those values */\n state.lenbits = 9;\n\n opts = { bits: state.lenbits };\n ret = inftrees(LENS, state.lens, 0, state.nlen, state.lencode, 0, state.work, opts);\n // We have separate tables & no pointers. 2 commented lines below not needed.\n // state.next_index = opts.table_index;\n state.lenbits = opts.bits;\n // state.lencode = state.next;\n\n if (ret) {\n strm.msg = 'invalid literal/lengths set';\n state.mode = BAD;\n break;\n }\n\n state.distbits = 6;\n //state.distcode.copy(state.codes);\n // Switch to use dynamic table\n state.distcode = state.distdyn;\n opts = { bits: state.distbits };\n ret = inftrees(DISTS, state.lens, state.nlen, state.ndist, state.distcode, 0, state.work, opts);\n // We have separate tables & no pointers. 2 commented lines below not needed.\n // state.next_index = opts.table_index;\n state.distbits = opts.bits;\n // state.distcode = state.next;\n\n if (ret) {\n strm.msg = 'invalid distances set';\n state.mode = BAD;\n break;\n }\n //Tracev((stderr, 'inflate: codes ok\\n'));\n state.mode = LEN_;\n if (flush === Z_TREES) { break inf_leave; }\n /* falls through */\n case LEN_:\n state.mode = LEN;\n /* falls through */\n case LEN:\n if (have >= 6 && left >= 258) {\n //--- RESTORE() ---\n strm.next_out = put;\n strm.avail_out = left;\n strm.next_in = next;\n strm.avail_in = have;\n state.hold = hold;\n state.bits = bits;\n //---\n inffast(strm, _out);\n //--- LOAD() ---\n put = strm.next_out;\n output = strm.output;\n left = strm.avail_out;\n next = strm.next_in;\n input = strm.input;\n have = strm.avail_in;\n hold = state.hold;\n bits = state.bits;\n //---\n\n if (state.mode === TYPE) {\n state.back = -1;\n }\n break;\n }\n state.back = 0;\n for (;;) {\n here = state.lencode[hold & ((1 << state.lenbits) - 1)]; /*BITS(state.lenbits)*/\n here_bits = here >>> 24;\n here_op = (here >>> 16) & 0xff;\n here_val = here & 0xffff;\n\n if (here_bits <= bits) { break; }\n //--- PULLBYTE() ---//\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n //---//\n }\n if (here_op && (here_op & 0xf0) === 0) {\n last_bits = here_bits;\n last_op = here_op;\n last_val = here_val;\n for (;;) {\n here = state.lencode[last_val +\n ((hold & ((1 << (last_bits + last_op)) - 1))/*BITS(last.bits + last.op)*/ >> last_bits)];\n here_bits = here >>> 24;\n here_op = (here >>> 16) & 0xff;\n here_val = here & 0xffff;\n\n if ((last_bits + here_bits) <= bits) { break; }\n //--- PULLBYTE() ---//\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n //---//\n }\n //--- DROPBITS(last.bits) ---//\n hold >>>= last_bits;\n bits -= last_bits;\n //---//\n state.back += last_bits;\n }\n //--- DROPBITS(here.bits) ---//\n hold >>>= here_bits;\n bits -= here_bits;\n //---//\n state.back += here_bits;\n state.length = here_val;\n if (here_op === 0) {\n //Tracevv((stderr, here.val >= 0x20 && here.val < 0x7f ?\n // \"inflate: literal '%c'\\n\" :\n // \"inflate: literal 0x%02x\\n\", here.val));\n state.mode = LIT;\n break;\n }\n if (here_op & 32) {\n //Tracevv((stderr, \"inflate: end of block\\n\"));\n state.back = -1;\n state.mode = TYPE;\n break;\n }\n if (here_op & 64) {\n strm.msg = 'invalid literal/length code';\n state.mode = BAD;\n break;\n }\n state.extra = here_op & 15;\n state.mode = LENEXT;\n /* falls through */\n case LENEXT:\n if (state.extra) {\n //=== NEEDBITS(state.extra);\n n = state.extra;\n while (bits < n) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n state.length += hold & ((1 << state.extra) - 1)/*BITS(state.extra)*/;\n //--- DROPBITS(state.extra) ---//\n hold >>>= state.extra;\n bits -= state.extra;\n //---//\n state.back += state.extra;\n }\n //Tracevv((stderr, \"inflate: length %u\\n\", state.length));\n state.was = state.length;\n state.mode = DIST;\n /* falls through */\n case DIST:\n for (;;) {\n here = state.distcode[hold & ((1 << state.distbits) - 1)];/*BITS(state.distbits)*/\n here_bits = here >>> 24;\n here_op = (here >>> 16) & 0xff;\n here_val = here & 0xffff;\n\n if ((here_bits) <= bits) { break; }\n //--- PULLBYTE() ---//\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n //---//\n }\n if ((here_op & 0xf0) === 0) {\n last_bits = here_bits;\n last_op = here_op;\n last_val = here_val;\n for (;;) {\n here = state.distcode[last_val +\n ((hold & ((1 << (last_bits + last_op)) - 1))/*BITS(last.bits + last.op)*/ >> last_bits)];\n here_bits = here >>> 24;\n here_op = (here >>> 16) & 0xff;\n here_val = here & 0xffff;\n\n if ((last_bits + here_bits) <= bits) { break; }\n //--- PULLBYTE() ---//\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n //---//\n }\n //--- DROPBITS(last.bits) ---//\n hold >>>= last_bits;\n bits -= last_bits;\n //---//\n state.back += last_bits;\n }\n //--- DROPBITS(here.bits) ---//\n hold >>>= here_bits;\n bits -= here_bits;\n //---//\n state.back += here_bits;\n if (here_op & 64) {\n strm.msg = 'invalid distance code';\n state.mode = BAD;\n break;\n }\n state.offset = here_val;\n state.extra = (here_op) & 15;\n state.mode = DISTEXT;\n /* falls through */\n case DISTEXT:\n if (state.extra) {\n //=== NEEDBITS(state.extra);\n n = state.extra;\n while (bits < n) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n state.offset += hold & ((1 << state.extra) - 1)/*BITS(state.extra)*/;\n //--- DROPBITS(state.extra) ---//\n hold >>>= state.extra;\n bits -= state.extra;\n //---//\n state.back += state.extra;\n }\n//#ifdef INFLATE_STRICT\n if (state.offset > state.dmax) {\n strm.msg = 'invalid distance too far back';\n state.mode = BAD;\n break;\n }\n//#endif\n //Tracevv((stderr, \"inflate: distance %u\\n\", state.offset));\n state.mode = MATCH;\n /* falls through */\n case MATCH:\n if (left === 0) { break inf_leave; }\n copy = _out - left;\n if (state.offset > copy) { /* copy from window */\n copy = state.offset - copy;\n if (copy > state.whave) {\n if (state.sane) {\n strm.msg = 'invalid distance too far back';\n state.mode = BAD;\n break;\n }\n// (!) This block is disabled in zlib defaults,\n// don't enable it for binary compatibility\n//#ifdef INFLATE_ALLOW_INVALID_DISTANCE_TOOFAR_ARRR\n// Trace((stderr, \"inflate.c too far\\n\"));\n// copy -= state.whave;\n// if (copy > state.length) { copy = state.length; }\n// if (copy > left) { copy = left; }\n// left -= copy;\n// state.length -= copy;\n// do {\n// output[put++] = 0;\n// } while (--copy);\n// if (state.length === 0) { state.mode = LEN; }\n// break;\n//#endif\n }\n if (copy > state.wnext) {\n copy -= state.wnext;\n from = state.wsize - copy;\n }\n else {\n from = state.wnext - copy;\n }\n if (copy > state.length) { copy = state.length; }\n from_source = state.window;\n }\n else { /* copy from output */\n from_source = output;\n from = put - state.offset;\n copy = state.length;\n }\n if (copy > left) { copy = left; }\n left -= copy;\n state.length -= copy;\n do {\n output[put++] = from_source[from++];\n } while (--copy);\n if (state.length === 0) { state.mode = LEN; }\n break;\n case LIT:\n if (left === 0) { break inf_leave; }\n output[put++] = state.length;\n left--;\n state.mode = LEN;\n break;\n case CHECK:\n if (state.wrap) {\n //=== NEEDBITS(32);\n while (bits < 32) {\n if (have === 0) { break inf_leave; }\n have--;\n // Use '|' instead of '+' to make sure that result is signed\n hold |= input[next++] << bits;\n bits += 8;\n }\n //===//\n _out -= left;\n strm.total_out += _out;\n state.total += _out;\n if ((state.wrap & 4) && _out) {\n strm.adler = state.check =\n /*UPDATE_CHECK(state.check, put - _out, _out);*/\n (state.flags ? crc32_1(state.check, output, _out, put - _out) : adler32_1(state.check, output, _out, put - _out));\n\n }\n _out = left;\n // NB: crc32 stored as signed 32-bit int, zswap32 returns signed too\n if ((state.wrap & 4) && (state.flags ? hold : zswap32(hold)) !== state.check) {\n strm.msg = 'incorrect data check';\n state.mode = BAD;\n break;\n }\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n //Tracev((stderr, \"inflate: check matches trailer\\n\"));\n }\n state.mode = LENGTH;\n /* falls through */\n case LENGTH:\n if (state.wrap && state.flags) {\n //=== NEEDBITS(32);\n while (bits < 32) {\n if (have === 0) { break inf_leave; }\n have--;\n hold += input[next++] << bits;\n bits += 8;\n }\n //===//\n if ((state.wrap & 4) && hold !== (state.total & 0xffffffff)) {\n strm.msg = 'incorrect length check';\n state.mode = BAD;\n break;\n }\n //=== INITBITS();\n hold = 0;\n bits = 0;\n //===//\n //Tracev((stderr, \"inflate: length matches trailer\\n\"));\n }\n state.mode = DONE;\n /* falls through */\n case DONE:\n ret = Z_STREAM_END$1;\n break inf_leave;\n case BAD:\n ret = Z_DATA_ERROR$1;\n break inf_leave;\n case MEM:\n return Z_MEM_ERROR$1;\n case SYNC:\n /* falls through */\n default:\n return Z_STREAM_ERROR$1;\n }\n }\n\n // inf_leave <- here is real place for \"goto inf_leave\", emulated via \"break inf_leave\"\n\n /*\n Return from inflate(), updating the total counts and the check value.\n If there was no progress during the inflate() call, return a buffer\n error. Call updatewindow() to create and/or update the window state.\n Note: a memory error from inflate() is non-recoverable.\n */\n\n //--- RESTORE() ---\n strm.next_out = put;\n strm.avail_out = left;\n strm.next_in = next;\n strm.avail_in = have;\n state.hold = hold;\n state.bits = bits;\n //---\n\n if (state.wsize || (_out !== strm.avail_out && state.mode < BAD &&\n (state.mode < CHECK || flush !== Z_FINISH$1))) {\n if (updatewindow(strm, strm.output, strm.next_out, _out - strm.avail_out)) ;\n }\n _in -= strm.avail_in;\n _out -= strm.avail_out;\n strm.total_in += _in;\n strm.total_out += _out;\n state.total += _out;\n if ((state.wrap & 4) && _out) {\n strm.adler = state.check = /*UPDATE_CHECK(state.check, strm.next_out - _out, _out);*/\n (state.flags ? crc32_1(state.check, output, _out, strm.next_out - _out) : adler32_1(state.check, output, _out, strm.next_out - _out));\n }\n strm.data_type = state.bits + (state.last ? 64 : 0) +\n (state.mode === TYPE ? 128 : 0) +\n (state.mode === LEN_ || state.mode === COPY_ ? 256 : 0);\n if (((_in === 0 && _out === 0) || flush === Z_FINISH$1) && ret === Z_OK$1) {\n ret = Z_BUF_ERROR;\n }\n return ret;\n};\n\n\nconst inflateEnd = (strm) => {\n\n if (inflateStateCheck(strm)) {\n return Z_STREAM_ERROR$1;\n }\n\n let state = strm.state;\n if (state.window) {\n state.window = null;\n }\n strm.state = null;\n return Z_OK$1;\n};\n\n\nconst inflateGetHeader = (strm, head) => {\n\n /* check state */\n if (inflateStateCheck(strm)) { return Z_STREAM_ERROR$1; }\n const state = strm.state;\n if ((state.wrap & 2) === 0) { return Z_STREAM_ERROR$1; }\n\n /* save header structure */\n state.head = head;\n head.done = false;\n return Z_OK$1;\n};\n\n\nconst inflateSetDictionary = (strm, dictionary) => {\n const dictLength = dictionary.length;\n\n let state;\n let dictid;\n let ret;\n\n /* check state */\n if (inflateStateCheck(strm)) { return Z_STREAM_ERROR$1; }\n state = strm.state;\n\n if (state.wrap !== 0 && state.mode !== DICT) {\n return Z_STREAM_ERROR$1;\n }\n\n /* check for correct dictionary identifier */\n if (state.mode === DICT) {\n dictid = 1; /* adler32(0, null, 0)*/\n /* dictid = adler32(dictid, dictionary, dictLength); */\n dictid = adler32_1(dictid, dictionary, dictLength, 0);\n if (dictid !== state.check) {\n return Z_DATA_ERROR$1;\n }\n }\n /* copy dictionary to window using updatewindow(), which will amend the\n existing dictionary if appropriate */\n ret = updatewindow(strm, dictionary, dictLength, dictLength);\n if (ret) {\n state.mode = MEM;\n return Z_MEM_ERROR$1;\n }\n state.havedict = 1;\n // Tracev((stderr, \"inflate: dictionary set\\n\"));\n return Z_OK$1;\n};\n\n\nvar inflateReset_1 = inflateReset;\nvar inflateReset2_1 = inflateReset2;\nvar inflateResetKeep_1 = inflateResetKeep;\nvar inflateInit_1 = inflateInit;\nvar inflateInit2_1 = inflateInit2;\nvar inflate_2$1 = inflate$2;\nvar inflateEnd_1 = inflateEnd;\nvar inflateGetHeader_1 = inflateGetHeader;\nvar inflateSetDictionary_1 = inflateSetDictionary;\nvar inflateInfo = 'pako inflate (from Nodeca project)';\n\n/* Not implemented\nmodule.exports.inflateCodesUsed = inflateCodesUsed;\nmodule.exports.inflateCopy = inflateCopy;\nmodule.exports.inflateGetDictionary = inflateGetDictionary;\nmodule.exports.inflateMark = inflateMark;\nmodule.exports.inflatePrime = inflatePrime;\nmodule.exports.inflateSync = inflateSync;\nmodule.exports.inflateSyncPoint = inflateSyncPoint;\nmodule.exports.inflateUndermine = inflateUndermine;\nmodule.exports.inflateValidate = inflateValidate;\n*/\n\nvar inflate_1$2 = {\n\tinflateReset: inflateReset_1,\n\tinflateReset2: inflateReset2_1,\n\tinflateResetKeep: inflateResetKeep_1,\n\tinflateInit: inflateInit_1,\n\tinflateInit2: inflateInit2_1,\n\tinflate: inflate_2$1,\n\tinflateEnd: inflateEnd_1,\n\tinflateGetHeader: inflateGetHeader_1,\n\tinflateSetDictionary: inflateSetDictionary_1,\n\tinflateInfo: inflateInfo\n};\n\n// (C) 1995-2013 Jean-loup Gailly and Mark Adler\n// (C) 2014-2017 Vitaly Puzrin and Andrey Tupitsin\n//\n// This software is provided 'as-is', without any express or implied\n// warranty. In no event will the authors be held liable for any damages\n// arising from the use of this software.\n//\n// Permission is granted to anyone to use this software for any purpose,\n// including commercial applications, and to alter it and redistribute it\n// freely, subject to the following restrictions:\n//\n// 1. The origin of this software must not be misrepresented; you must not\n// claim that you wrote the original software. If you use this software\n// in a product, an acknowledgment in the product documentation would be\n// appreciated but is not required.\n// 2. Altered source versions must be plainly marked as such, and must not be\n// misrepresented as being the original software.\n// 3. This notice may not be removed or altered from any source distribution.\n\nfunction GZheader() {\n /* true if compressed data believed to be text */\n this.text = 0;\n /* modification time */\n this.time = 0;\n /* extra flags (not used when writing a gzip file) */\n this.xflags = 0;\n /* operating system */\n this.os = 0;\n /* pointer to extra field or Z_NULL if none */\n this.extra = null;\n /* extra field length (valid if extra != Z_NULL) */\n this.extra_len = 0; // Actually, we don't need it in JS,\n // but leave for few code modifications\n\n //\n // Setup limits is not necessary because in js we should not preallocate memory\n // for inflate use constant limit in 65536 bytes\n //\n\n /* space at extra (only when reading header) */\n // this.extra_max = 0;\n /* pointer to zero-terminated file name or Z_NULL */\n this.name = '';\n /* space at name (only when reading header) */\n // this.name_max = 0;\n /* pointer to zero-terminated comment or Z_NULL */\n this.comment = '';\n /* space at comment (only when reading header) */\n // this.comm_max = 0;\n /* true if there was or will be a header crc */\n this.hcrc = 0;\n /* true when done reading gzip header (not used when writing a gzip file) */\n this.done = false;\n}\n\nvar gzheader = GZheader;\n\nconst toString = Object.prototype.toString;\n\n/* Public constants ==========================================================*/\n/* ===========================================================================*/\n\nconst {\n Z_NO_FLUSH, Z_FINISH,\n Z_OK, Z_STREAM_END, Z_NEED_DICT, Z_STREAM_ERROR, Z_DATA_ERROR, Z_MEM_ERROR\n} = constants$2;\n\n/* ===========================================================================*/\n\n\n/**\n * class Inflate\n *\n * Generic JS-style wrapper for zlib calls. If you don't need\n * streaming behaviour - use more simple functions: [[inflate]]\n * and [[inflateRaw]].\n **/\n\n/* internal\n * inflate.chunks -> Array\n *\n * Chunks of output data, if [[Inflate#onData]] not overridden.\n **/\n\n/**\n * Inflate.result -> Uint8Array|String\n *\n * Uncompressed result, generated by default [[Inflate#onData]]\n * and [[Inflate#onEnd]] handlers. Filled after you push last chunk\n * (call [[Inflate#push]] with `Z_FINISH` / `true` param).\n **/\n\n/**\n * Inflate.err -> Number\n *\n * Error code after inflate finished. 0 (Z_OK) on success.\n * Should be checked if broken data possible.\n **/\n\n/**\n * Inflate.msg -> String\n *\n * Error message, if [[Inflate.err]] != 0\n **/\n\n\n/**\n * new Inflate(options)\n * - options (Object): zlib inflate options.\n *\n * Creates new inflator instance with specified params. Throws exception\n * on bad params. Supported options:\n *\n * - `windowBits`\n * - `dictionary`\n *\n * [http://zlib.net/manual.html#Advanced](http://zlib.net/manual.html#Advanced)\n * for more information on these.\n *\n * Additional options, for internal needs:\n *\n * - `chunkSize` - size of generated data chunks (16K by default)\n * - `raw` (Boolean) - do raw inflate\n * - `to` (String) - if equal to 'string', then result will be converted\n * from utf8 to utf16 (javascript) string. When string output requested,\n * chunk length can differ from `chunkSize`, depending on content.\n *\n * By default, when no options set, autodetect deflate/gzip data format via\n * wrapper header.\n *\n * ##### Example:\n *\n * ```javascript\n * const pako = require('pako')\n * const chunk1 = new Uint8Array([1,2,3,4,5,6,7,8,9])\n * const chunk2 = new Uint8Array([10,11,12,13,14,15,16,17,18,19]);\n *\n * const inflate = new pako.Inflate({ level: 3});\n *\n * inflate.push(chunk1, false);\n * inflate.push(chunk2, true); // true -> last chunk\n *\n * if (inflate.err) { throw new Error(inflate.err); }\n *\n * console.log(inflate.result);\n * ```\n **/\nfunction Inflate$1(options) {\n this.options = common.assign({\n chunkSize: 1024 * 64,\n windowBits: 15,\n to: ''\n }, options || {});\n\n const opt = this.options;\n\n // Force window size for `raw` data, if not set directly,\n // because we have no header for autodetect.\n if (opt.raw && (opt.windowBits >= 0) && (opt.windowBits < 16)) {\n opt.windowBits = -opt.windowBits;\n if (opt.windowBits === 0) { opt.windowBits = -15; }\n }\n\n // If `windowBits` not defined (and mode not raw) - set autodetect flag for gzip/deflate\n if ((opt.windowBits >= 0) && (opt.windowBits < 16) &&\n !(options && options.windowBits)) {\n opt.windowBits += 32;\n }\n\n // Gzip header has no info about windows size, we can do autodetect only\n // for deflate. So, if window size not set, force it to max when gzip possible\n if ((opt.windowBits > 15) && (opt.windowBits < 48)) {\n // bit 3 (16) -> gzipped data\n // bit 4 (32) -> autodetect gzip/deflate\n if ((opt.windowBits & 15) === 0) {\n opt.windowBits |= 15;\n }\n }\n\n this.err = 0; // error code, if happens (0 = Z_OK)\n this.msg = ''; // error message\n this.ended = false; // used to avoid multiple onEnd() calls\n this.chunks = []; // chunks of compressed data\n\n this.strm = new zstream();\n this.strm.avail_out = 0;\n\n let status = inflate_1$2.inflateInit2(\n this.strm,\n opt.windowBits\n );\n\n if (status !== Z_OK) {\n throw new Error(messages[status]);\n }\n\n this.header = new gzheader();\n\n inflate_1$2.inflateGetHeader(this.strm, this.header);\n\n // Setup dictionary\n if (opt.dictionary) {\n // Convert data if needed\n if (typeof opt.dictionary === 'string') {\n opt.dictionary = strings.string2buf(opt.dictionary);\n } else if (toString.call(opt.dictionary) === '[object ArrayBuffer]') {\n opt.dictionary = new Uint8Array(opt.dictionary);\n }\n if (opt.raw) { //In raw mode we need to set the dictionary early\n status = inflate_1$2.inflateSetDictionary(this.strm, opt.dictionary);\n if (status !== Z_OK) {\n throw new Error(messages[status]);\n }\n }\n }\n}\n\n/**\n * Inflate#push(data[, flush_mode]) -> Boolean\n * - data (Uint8Array|ArrayBuffer): input data\n * - flush_mode (Number|Boolean): 0..6 for corresponding Z_NO_FLUSH..Z_TREE\n * flush modes. See constants. Skipped or `false` means Z_NO_FLUSH,\n * `true` means Z_FINISH.\n *\n * Sends input data to inflate pipe, generating [[Inflate#onData]] calls with\n * new output chunks. Returns `true` on success. If end of stream detected,\n * [[Inflate#onEnd]] will be called.\n *\n * `flush_mode` is not needed for normal operation, because end of stream\n * detected automatically. You may try to use it for advanced things, but\n * this functionality was not tested.\n *\n * On fail call [[Inflate#onEnd]] with error code and return false.\n *\n * ##### Example\n *\n * ```javascript\n * push(chunk, false); // push one of data chunks\n * ...\n * push(chunk, true); // push last chunk\n * ```\n **/\nInflate$1.prototype.push = function (data, flush_mode) {\n const strm = this.strm;\n const chunkSize = this.options.chunkSize;\n const dictionary = this.options.dictionary;\n let status, _flush_mode, last_avail_out;\n\n if (this.ended) return false;\n\n if (flush_mode === ~~flush_mode) _flush_mode = flush_mode;\n else _flush_mode = flush_mode === true ? Z_FINISH : Z_NO_FLUSH;\n\n // Convert data if needed\n if (toString.call(data) === '[object ArrayBuffer]') {\n strm.input = new Uint8Array(data);\n } else {\n strm.input = data;\n }\n\n strm.next_in = 0;\n strm.avail_in = strm.input.length;\n\n for (;;) {\n if (strm.avail_out === 0) {\n strm.output = new Uint8Array(chunkSize);\n strm.next_out = 0;\n strm.avail_out = chunkSize;\n }\n\n status = inflate_1$2.inflate(strm, _flush_mode);\n\n if (status === Z_NEED_DICT && dictionary) {\n status = inflate_1$2.inflateSetDictionary(strm, dictionary);\n\n if (status === Z_OK) {\n status = inflate_1$2.inflate(strm, _flush_mode);\n } else if (status === Z_DATA_ERROR) {\n // Replace code with more verbose\n status = Z_NEED_DICT;\n }\n }\n\n // Skip snyc markers if more data follows and not raw mode\n while (strm.avail_in > 0 &&\n status === Z_STREAM_END &&\n strm.state.wrap > 0 &&\n data[strm.next_in] !== 0)\n {\n inflate_1$2.inflateReset(strm);\n status = inflate_1$2.inflate(strm, _flush_mode);\n }\n\n switch (status) {\n case Z_STREAM_ERROR:\n case Z_DATA_ERROR:\n case Z_NEED_DICT:\n case Z_MEM_ERROR:\n this.onEnd(status);\n this.ended = true;\n return false;\n }\n\n // Remember real `avail_out` value, because we may patch out buffer content\n // to align utf8 strings boundaries.\n last_avail_out = strm.avail_out;\n\n if (strm.next_out) {\n if (strm.avail_out === 0 || status === Z_STREAM_END) {\n\n if (this.options.to === 'string') {\n\n let next_out_utf8 = strings.utf8border(strm.output, strm.next_out);\n\n let tail = strm.next_out - next_out_utf8;\n let utf8str = strings.buf2string(strm.output, next_out_utf8);\n\n // move tail & realign counters\n strm.next_out = tail;\n strm.avail_out = chunkSize - tail;\n if (tail) strm.output.set(strm.output.subarray(next_out_utf8, next_out_utf8 + tail), 0);\n\n this.onData(utf8str);\n\n } else {\n this.onData(strm.output.length === strm.next_out ? strm.output : strm.output.subarray(0, strm.next_out));\n }\n }\n }\n\n // Must repeat iteration if out buffer is full\n if (status === Z_OK && last_avail_out === 0) continue;\n\n // Finalize if end of stream reached.\n if (status === Z_STREAM_END) {\n status = inflate_1$2.inflateEnd(this.strm);\n this.onEnd(status);\n this.ended = true;\n return true;\n }\n\n if (strm.avail_in === 0) break;\n }\n\n return true;\n};\n\n\n/**\n * Inflate#onData(chunk) -> Void\n * - chunk (Uint8Array|String): output data. When string output requested,\n * each chunk will be string.\n *\n * By default, stores data blocks in `chunks[]` property and glue\n * those in `onEnd`. Override this handler, if you need another behaviour.\n **/\nInflate$1.prototype.onData = function (chunk) {\n this.chunks.push(chunk);\n};\n\n\n/**\n * Inflate#onEnd(status) -> Void\n * - status (Number): inflate status. 0 (Z_OK) on success,\n * other if not.\n *\n * Called either after you tell inflate that the input stream is\n * complete (Z_FINISH). By default - join collected chunks,\n * free memory and fill `results` / `err` properties.\n **/\nInflate$1.prototype.onEnd = function (status) {\n // On success - join\n if (status === Z_OK) {\n if (this.options.to === 'string') {\n this.result = this.chunks.join('');\n } else {\n this.result = common.flattenChunks(this.chunks);\n }\n }\n this.chunks = [];\n this.err = status;\n this.msg = this.strm.msg;\n};\n\n\n/**\n * inflate(data[, options]) -> Uint8Array|String\n * - data (Uint8Array|ArrayBuffer): input data to decompress.\n * - options (Object): zlib inflate options.\n *\n * Decompress `data` with inflate/ungzip and `options`. Autodetect\n * format via wrapper header by default. That's why we don't provide\n * separate `ungzip` method.\n *\n * Supported options are:\n *\n * - windowBits\n *\n * [http://zlib.net/manual.html#Advanced](http://zlib.net/manual.html#Advanced)\n * for more information.\n *\n * Sugar (options):\n *\n * - `raw` (Boolean) - say that we work with raw stream, if you don't wish to specify\n * negative windowBits implicitly.\n * - `to` (String) - if equal to 'string', then result will be converted\n * from utf8 to utf16 (javascript) string. When string output requested,\n * chunk length can differ from `chunkSize`, depending on content.\n *\n *\n * ##### Example:\n *\n * ```javascript\n * const pako = require('pako');\n * const input = pako.deflate(new Uint8Array([1,2,3,4,5,6,7,8,9]));\n * let output;\n *\n * try {\n * output = pako.inflate(input);\n * } catch (err) {\n * console.log(err);\n * }\n * ```\n **/\nfunction inflate$1(input, options) {\n const inflator = new Inflate$1(options);\n\n inflator.push(input);\n\n // That will never happens, if you don't cheat with options :)\n if (inflator.err) throw inflator.msg || messages[inflator.err];\n\n return inflator.result;\n}\n\n\n/**\n * inflateRaw(data[, options]) -> Uint8Array|String\n * - data (Uint8Array|ArrayBuffer): input data to decompress.\n * - options (Object): zlib inflate options.\n *\n * The same as [[inflate]], but creates raw data, without wrapper\n * (header and adler32 crc).\n **/\nfunction inflateRaw$1(input, options) {\n options = options || {};\n options.raw = true;\n return inflate$1(input, options);\n}\n\n\n/**\n * ungzip(data[, options]) -> Uint8Array|String\n * - data (Uint8Array|ArrayBuffer): input data to decompress.\n * - options (Object): zlib inflate options.\n *\n * Just shortcut to [[inflate]], because it autodetects format\n * by header.content. Done for convenience.\n **/\n\n\nvar Inflate_1$1 = Inflate$1;\nvar inflate_2 = inflate$1;\nvar inflateRaw_1$1 = inflateRaw$1;\nvar ungzip$1 = inflate$1;\nvar constants = constants$2;\n\nvar inflate_1$1 = {\n\tInflate: Inflate_1$1,\n\tinflate: inflate_2,\n\tinflateRaw: inflateRaw_1$1,\n\tungzip: ungzip$1,\n\tconstants: constants\n};\n\nconst { Deflate, deflate, deflateRaw, gzip } = deflate_1$1;\n\nconst { Inflate, inflate, inflateRaw, ungzip } = inflate_1$1;\n\n\n\nvar Deflate_1 = Deflate;\nvar deflate_1 = deflate;\nvar deflateRaw_1 = deflateRaw;\nvar gzip_1 = gzip;\nvar Inflate_1 = Inflate;\nvar inflate_1 = inflate;\nvar inflateRaw_1 = inflateRaw;\nvar ungzip_1 = ungzip;\nvar constants_1 = constants$2;\n\nvar pako = {\n\tDeflate: Deflate_1,\n\tdeflate: deflate_1,\n\tdeflateRaw: deflateRaw_1,\n\tgzip: gzip_1,\n\tInflate: Inflate_1,\n\tinflate: inflate_1,\n\tinflateRaw: inflateRaw_1,\n\tungzip: ungzip_1,\n\tconstants: constants_1\n};\n\nexport { Deflate_1 as Deflate, Inflate_1 as Inflate, constants_1 as constants, pako as default, deflate_1 as deflate, deflateRaw_1 as deflateRaw, gzip_1 as gzip, inflate_1 as inflate, inflateRaw_1 as inflateRaw, ungzip_1 as ungzip };\n","export class AbortError extends Error {\n public code: string\n\n public constructor(message: string) {\n super(message)\n this.code = 'ERR_ABORTED'\n }\n}\n\ninterface Block {\n offset: number\n length: number\n}\n// sort blocks by file offset and\n// group blocks that are within 2KB of eachother\nexport function groupBlocks(blocks: Block[]) {\n blocks.sort((b0, b1) => b0.offset - b1.offset)\n\n const blockGroups = []\n let lastBlock: (Block & { blocks: Block[] }) | undefined\n let lastBlockEnd: number | undefined\n for (const block of blocks) {\n if (lastBlock && lastBlockEnd && block.offset - lastBlockEnd <= 2000) {\n lastBlock.length =\n lastBlock.length + block.length - lastBlockEnd + block.offset\n lastBlock.blocks.push(block)\n } else {\n blockGroups.push(\n (lastBlock = {\n blocks: [block],\n length: block.length,\n offset: block.offset,\n }),\n )\n }\n lastBlockEnd = lastBlock.offset + lastBlock.length\n }\n\n return blockGroups\n}\n\n/**\n * Properly check if the given AbortSignal is aborted. Per the standard, if the\n * signal reads as aborted, this function throws either a DOMException\n * AbortError, or a regular error with a `code` attribute set to `ERR_ABORTED`.\n *\n * For convenience, passing `undefined` is a no-op\n *\n * @param {AbortSignal} [signal] an AbortSignal, or anything with an `aborted` attribute\n * @returns nothing\n */\nexport function checkAbortSignal(signal?: AbortSignal): void {\n if (!signal) {\n return\n }\n\n if (signal.aborted) {\n if (typeof DOMException === 'undefined') {\n const e = new AbortError('aborted')\n e.code = 'ERR_ABORTED'\n throw e\n } else {\n throw new DOMException('aborted', 'AbortError')\n }\n }\n}\n\n/**\n * Skips to the next tick, then runs `checkAbortSignal`.\n * Await this to inside an otherwise synchronous loop to\n * provide a place to break when an abort signal is received.\n * @param {AbortSignal} signal\n */\nexport async function abortBreakPoint(signal?: AbortSignal): Promise {\n await Promise.resolve()\n checkAbortSignal(signal)\n}\n","import { Buffer } from 'buffer'\nimport { Observer } from 'rxjs'\nimport AbortablePromiseCache from '@gmod/abortable-promise-cache'\nimport { GenericFilehandle } from 'generic-filehandle'\nimport QuickLRU from 'quick-lru'\n\n// locals\nimport Range from './range'\nimport { unzip } from './unzip'\nimport { Feature } from './bbi'\nimport { groupBlocks, checkAbortSignal } from './util'\n\nconst decoder =\n typeof TextDecoder !== 'undefined' ? new TextDecoder('utf8') : undefined\n\ninterface CoordRequest {\n chrId: number\n start: number\n end: number\n}\n\ninterface ReadData {\n offset: number\n length: number\n}\n\ninterface Options {\n signal?: AbortSignal\n request?: CoordRequest\n}\n\nfunction coordFilter(s1: number, e1: number, s2: number, e2: number): boolean {\n return s1 < e2 && e1 >= s2\n}\n\n/**\n * View into a subset of the data in a BigWig file.\n *\n * Adapted by Robert Buels and Colin Diesh from bigwig.js in the Dalliance\n * Genome Explorer by Thomas Down.\n * @constructs\n */\n\nexport class BlockView {\n private cirTreePromise?: Promise<{ bytesRead: number; buffer: Buffer }>\n\n private featureCache = new AbortablePromiseCache({\n cache: new QuickLRU({ maxSize: 1000 }),\n\n fill: async (requestData, signal) => {\n const len = requestData.length\n const off = requestData.offset\n const { buffer } = await this.bbi.read(Buffer.alloc(len), 0, len, off, {\n signal,\n })\n return buffer\n },\n })\n\n public constructor(\n private bbi: GenericFilehandle,\n private refsByName: any,\n private cirTreeOffset: number,\n private isBigEndian: boolean,\n private isCompressed: boolean,\n private blockType: string,\n ) {\n if (!(cirTreeOffset >= 0)) {\n throw new Error('invalid cirTreeOffset!')\n }\n }\n\n public async readWigData(\n chrName: string,\n start: number,\n end: number,\n observer: Observer,\n opts?: Options,\n ) {\n try {\n const { refsByName, bbi, cirTreeOffset, isBigEndian } = this\n const chrId = refsByName[chrName]\n if (chrId === undefined) {\n observer.complete()\n }\n const request = { chrId, start, end }\n if (!this.cirTreePromise) {\n this.cirTreePromise = bbi.read(\n Buffer.alloc(48),\n 0,\n 48,\n cirTreeOffset,\n opts,\n )\n }\n const { buffer } = await this.cirTreePromise\n const cirBlockSize = isBigEndian\n ? buffer.readUInt32BE(4)\n : buffer.readUInt32LE(4)\n let blocksToFetch: any[] = []\n let outstanding = 0\n const le = true\n\n const cirFobRecur2 = (\n cirBlockData: Buffer,\n offset2: number,\n level: number,\n ) => {\n try {\n const data = cirBlockData.subarray(offset2)\n\n const b = data\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n\n const isLeaf = dataView.getUint8(offset)\n offset += 2 // 1 skip\n const cnt = dataView.getUint16(offset, le)\n offset += 2\n if (isLeaf === 1) {\n const blocksToFetch2 = []\n for (let i = 0; i < cnt; i++) {\n const startChrom = dataView.getUint32(offset, le)\n offset += 4\n const startBase = dataView.getUint32(offset, le)\n offset += 4\n const endChrom = dataView.getUint32(offset, le)\n offset += 4\n const endBase = dataView.getUint32(offset, le)\n offset += 4\n const blockOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const blockSize = Number(dataView.getBigUint64(offset, le))\n offset += 8\n blocksToFetch2.push({\n startChrom,\n startBase,\n endBase,\n endChrom,\n blockOffset,\n blockSize,\n offset,\n })\n }\n blocksToFetch = blocksToFetch.concat(\n blocksToFetch2\n .filter(f => filterFeats(f))\n .map(l => ({\n offset: l.blockOffset,\n length: l.blockSize,\n })),\n )\n } else if (isLeaf === 0) {\n const recurOffsets = []\n for (let i = 0; i < cnt; i++) {\n const startChrom = dataView.getUint32(offset, le)\n offset += 4\n const startBase = dataView.getUint32(offset, le)\n offset += 4\n const endChrom = dataView.getUint32(offset, le)\n offset += 4\n const endBase = dataView.getUint32(offset, le)\n offset += 4\n const blockOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n recurOffsets.push({\n startChrom,\n startBase,\n endChrom,\n endBase,\n blockOffset,\n offset,\n })\n }\n const recurOffsets2 = recurOffsets\n .filter(f => filterFeats(f))\n .map(l => l.blockOffset)\n if (recurOffsets2.length > 0) {\n cirFobRecur(recurOffsets2, level + 1)\n }\n }\n } catch (e) {\n observer.error(e)\n }\n }\n\n const filterFeats = (b: {\n startChrom: number\n startBase: number\n endChrom: number\n endBase: number\n }) => {\n const { startChrom, startBase, endChrom, endBase } = b\n return (\n (startChrom < chrId || (startChrom === chrId && startBase <= end)) &&\n (endChrom > chrId || (endChrom === chrId && endBase >= start))\n )\n }\n\n const cirFobStartFetch = async (\n off: number[],\n fr: Range,\n level: number,\n ) => {\n try {\n const length = fr.max - fr.min\n const offset = fr.min\n const resultBuffer: Buffer = await this.featureCache.get(\n `${length}_${offset}`,\n { length, offset },\n opts?.signal,\n )\n for (const element of off) {\n if (fr.contains(element)) {\n cirFobRecur2(resultBuffer, element - offset, level)\n outstanding -= 1\n if (outstanding === 0) {\n this.readFeatures(observer, blocksToFetch, {\n ...opts,\n request,\n }).catch((e: unknown) => {\n observer.error(e)\n })\n }\n }\n }\n } catch (e) {\n observer.error(e)\n }\n }\n const cirFobRecur = (offset: number[], level: number) => {\n try {\n outstanding += offset.length\n\n // Upper bound on size, based on a completely full leaf node.\n const maxCirBlockSpan = 4 + cirBlockSize * 32\n let spans = new Range([\n {\n min: offset[0],\n max: offset[0] + maxCirBlockSpan,\n },\n ])\n for (let i = 1; i < offset.length; i += 1) {\n const blockSpan = new Range([\n {\n min: offset[i],\n max: offset[i] + maxCirBlockSpan,\n },\n ])\n spans = spans.union(blockSpan)\n }\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n spans.getRanges().map(fr => cirFobStartFetch(offset, fr, level))\n } catch (e) {\n observer.error(e)\n }\n }\n\n cirFobRecur([Number(cirTreeOffset) + 48], 1)\n return\n } catch (e) {\n observer.error(e)\n }\n }\n\n private parseSummaryBlock(\n b: Buffer,\n startOffset: number,\n request?: CoordRequest,\n ) {\n const features = [] as any[]\n let offset = startOffset\n\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n while (offset < b.byteLength) {\n // this was extracted from looking at the runtime code generated by\n // binary-parser\n const chromId = dataView.getUint32(offset, true)\n offset += 4\n const start = dataView.getUint32(offset, true)\n offset += 4\n const end = dataView.getUint32(offset, true)\n offset += 4\n const validCnt = dataView.getUint32(offset, true)\n offset += 4\n const minScore = dataView.getFloat32(offset, true)\n offset += 4\n const maxScore = dataView.getFloat32(offset, true)\n offset += 4\n const sumData = dataView.getFloat32(offset, true)\n offset += 4\n // unused\n // const sumSqData = dataView.getFloat32(offset, true)\n offset += 4\n\n if (\n request\n ? chromId === request.chrId &&\n coordFilter(start, end, request.start, request.end)\n : true\n ) {\n features.push({\n start,\n end,\n maxScore,\n minScore,\n summary: true,\n score: sumData / (validCnt || 1),\n })\n }\n }\n\n return features\n }\n\n private parseBigBedBlock(\n data: Buffer,\n startOffset: number,\n offset: number,\n request?: CoordRequest,\n ) {\n const items = [] as Feature[]\n let currOffset = startOffset\n const le = true\n const b = data\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n while (currOffset < data.byteLength) {\n const c2 = currOffset\n const chromId = dataView.getUint32(currOffset, le)\n currOffset += 4\n const start = dataView.getInt32(currOffset, le)\n currOffset += 4\n const end = dataView.getInt32(currOffset, le)\n currOffset += 4\n let i = currOffset\n for (; i < data.length; i++) {\n if (data[i] === 0) {\n break\n }\n }\n const b = data.subarray(currOffset, i)\n const rest = decoder?.decode(b) ?? b.toString()\n currOffset = i + 1\n items.push({\n chromId,\n start,\n end,\n rest,\n uniqueId: `bb-${offset + c2}`,\n })\n }\n\n return request\n ? items.filter((f: any) =>\n coordFilter(f.start, f.end, request.start, request.end),\n )\n : items\n }\n\n private parseBigWigBlock(\n buffer: Buffer,\n startOffset: number,\n req?: CoordRequest,\n ) {\n const b = buffer.subarray(startOffset)\n\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n offset += 4\n const blockStart = dataView.getInt32(offset, true)\n offset += 8\n const itemStep = dataView.getUint32(offset, true)\n offset += 4\n const itemSpan = dataView.getUint32(offset, true)\n offset += 4\n const blockType = dataView.getUint8(offset)\n offset += 2\n const itemCount = dataView.getUint16(offset, true)\n offset += 2\n const items = new Array(itemCount)\n switch (blockType) {\n case 1: {\n for (let i = 0; i < itemCount; i++) {\n const start = dataView.getInt32(offset, true)\n offset += 4\n const end = dataView.getInt32(offset, true)\n offset += 4\n const score = dataView.getFloat32(offset, true)\n offset += 4\n items[i] = {\n start,\n end,\n score,\n }\n }\n break\n }\n case 2: {\n for (let i = 0; i < itemCount; i++) {\n const start = dataView.getInt32(offset, true)\n offset += 4\n const score = dataView.getFloat32(offset, true)\n offset += 4\n items[i] = {\n score,\n start,\n end: start + itemSpan,\n }\n }\n break\n }\n case 3: {\n for (let i = 0; i < itemCount; i++) {\n const score = dataView.getFloat32(offset, true)\n offset += 4\n const start = blockStart + i * itemStep\n items[i] = {\n score,\n start,\n end: start + itemSpan,\n }\n }\n break\n }\n }\n\n return req\n ? items.filter(f => coordFilter(f.start, f.end, req.start, req.end))\n : items\n }\n\n public async readFeatures(\n observer: Observer,\n blocks: { offset: number; length: number }[],\n opts: Options = {},\n ) {\n try {\n const { blockType, isCompressed } = this\n const { signal, request } = opts\n const blockGroupsToFetch = groupBlocks(blocks)\n checkAbortSignal(signal)\n await Promise.all(\n blockGroupsToFetch.map(async blockGroup => {\n checkAbortSignal(signal)\n const { length, offset } = blockGroup\n const data = await this.featureCache.get(\n `${length}_${offset}`,\n blockGroup,\n signal,\n )\n for (const block of blockGroup.blocks) {\n checkAbortSignal(signal)\n let blockOffset = Number(block.offset) - Number(blockGroup.offset)\n let resultData = data\n if (isCompressed) {\n resultData = unzip(data.subarray(blockOffset))\n blockOffset = 0\n }\n checkAbortSignal(signal)\n\n switch (blockType) {\n case 'summary': {\n observer.next(\n this.parseSummaryBlock(resultData, blockOffset, request),\n )\n break\n }\n case 'bigwig': {\n observer.next(\n this.parseBigWigBlock(resultData, blockOffset, request),\n )\n break\n }\n case 'bigbed': {\n observer.next(\n this.parseBigBedBlock(\n resultData,\n blockOffset,\n Number(block.offset) * (1 << 8),\n request,\n ),\n )\n break\n }\n default: {\n console.warn(`Don't know what to do with ${blockType}`)\n }\n }\n }\n }),\n )\n observer.complete()\n } catch (e) {\n observer.error(e)\n }\n }\n}\n","import { Buffer } from 'buffer'\nimport { inflateRaw } from 'pako'\n\nexport function unzip(input: Buffer) {\n return inflateRaw(input.subarray(2))\n}\n","import { Buffer } from 'buffer'\nimport { LocalFile, RemoteFile, GenericFilehandle } from 'generic-filehandle'\nimport { firstValueFrom, Observable } from 'rxjs'\nimport { toArray } from 'rxjs/operators'\nimport { BlockView } from './block-view'\n\nconst BIG_WIG_MAGIC = -2003829722\nconst BIG_BED_MAGIC = -2021002517\n\ninterface ZoomLevel {\n reductionLevel: number\n reserved: number\n dataOffset: number\n indexOffset: number\n}\n\nexport interface Feature {\n offset?: number\n chromId: number\n start: number\n end: number\n score?: number\n rest?: string // for bigbed line\n minScore?: number // for summary line\n maxScore?: number // for summary line\n summary?: boolean // is summary line\n uniqueId?: string // for bigbed contains uniqueId calculated from file offset\n field?: number // used in bigbed searching\n}\ninterface Statistics {\n scoreSum: number\n basesCovered: number\n scoreSumSquares: number\n scoreMin: number\n scoreMax: number\n}\n\ninterface RefInfo {\n name: string\n id: number\n length: number\n}\n\nexport interface MainHeader {\n magic: number\n version: number\n autoSql: string\n totalSummary: Statistics\n asOffset: number\n zoomLevels: ZoomLevel[]\n fieldCount: number\n numZoomLevels: number\n unzoomedIndexOffset: number\n totalSummaryOffset: number\n unzoomedDataOffset: number\n definedFieldCount: number\n uncompressBufSize: number\n chromTreeOffset: number\n extHeaderOffset: number\n isBigEndian: boolean\n fileType: string\n}\nexport interface Header extends MainHeader {\n refsByName: Record\n refsByNumber: Record\n}\n\nexport interface RequestOptions {\n signal?: AbortSignal\n headers?: Record\n [key: string]: unknown\n}\n\nexport abstract class BBI {\n protected bbi: GenericFilehandle\n\n private headerP?: Promise

\n\n protected renameRefSeqs: (a: string) => string\n\n public getHeader(opts?: RequestOptions) {\n if (!this.headerP) {\n this.headerP = this._getHeader(opts).catch((e: unknown) => {\n this.headerP = undefined\n throw e\n })\n }\n return this.headerP\n }\n\n /*\n * @param filehandle - a filehandle from generic-filehandle or implementing\n * something similar to the node10 fs.promises API\n *\n * @param path - a Local file path as a string\n *\n * @param url - a URL string\n *\n * @param renameRefSeqs - an optional method to rename the internal reference\n * sequences using a mapping function\n */\n public constructor(args: {\n filehandle?: GenericFilehandle\n path?: string\n url?: string\n renameRefSeqs?: (a: string) => string\n }) {\n const { filehandle, renameRefSeqs = s => s, path, url } = args\n this.renameRefSeqs = renameRefSeqs\n if (filehandle) {\n this.bbi = filehandle\n } else if (url) {\n this.bbi = new RemoteFile(url)\n } else if (path) {\n this.bbi = new LocalFile(path)\n } else {\n throw new Error('no file given')\n }\n }\n\n private async _getHeader(opts?: RequestOptions) {\n const header = await this._getMainHeader(opts)\n const chroms = await this._readChromTree(header, opts)\n return { ...header, ...chroms }\n }\n\n private async _getMainHeader(\n opts?: RequestOptions,\n requestSize = 2000,\n ): Promise {\n const le = true\n const { buffer } = await this.bbi.read(\n Buffer.alloc(requestSize),\n 0,\n requestSize,\n 0,\n opts,\n )\n const isBigEndian = this._isBigEndian(buffer)\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n const magic = dataView.getInt32(offset, le)\n offset += 4\n const version = dataView.getUint16(offset, le)\n offset += 2\n const numZoomLevels = dataView.getUint16(offset, le)\n offset += 2\n const chromTreeOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const unzoomedDataOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const unzoomedIndexOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const fieldCount = dataView.getUint16(offset, le)\n offset += 2\n const definedFieldCount = dataView.getUint16(offset, le)\n offset += 2\n const asOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const totalSummaryOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const uncompressBufSize = dataView.getUint32(offset, le)\n offset += 4\n const extHeaderOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const zoomLevels = [] as ZoomLevel[]\n for (let i = 0; i < numZoomLevels; i++) {\n const reductionLevel = dataView.getUint32(offset, le)\n offset += 4\n const reserved = dataView.getUint32(offset, le)\n offset += 4\n const dataOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const indexOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n zoomLevels.push({ reductionLevel, reserved, dataOffset, indexOffset })\n }\n\n const fileType = magic === BIG_BED_MAGIC ? 'bigbed' : 'bigwig'\n\n // refetch header if it is too large on first pass,\n // 8*5 is the sizeof the totalSummary struct\n if (asOffset > requestSize || totalSummaryOffset > requestSize - 8 * 5) {\n return this._getMainHeader(opts, requestSize * 2)\n }\n\n let totalSummary: Statistics\n if (totalSummaryOffset) {\n const b = buffer.subarray(Number(totalSummaryOffset))\n let offset = 0\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n const basesCovered = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const scoreMin = dataView.getFloat64(offset, le)\n offset += 8\n const scoreMax = dataView.getFloat64(offset, le)\n offset += 8\n const scoreSum = dataView.getFloat64(offset, le)\n offset += 8\n const scoreSumSquares = dataView.getFloat64(offset, le)\n offset += 8\n\n totalSummary = {\n scoreMin,\n scoreMax,\n scoreSum,\n scoreSumSquares,\n basesCovered,\n }\n } else {\n throw new Error('no stats')\n }\n\n return {\n zoomLevels,\n magic,\n extHeaderOffset,\n numZoomLevels,\n fieldCount,\n totalSummary,\n definedFieldCount,\n uncompressBufSize,\n asOffset,\n chromTreeOffset,\n totalSummaryOffset,\n unzoomedDataOffset,\n unzoomedIndexOffset,\n fileType,\n version,\n isBigEndian,\n autoSql: asOffset\n ? buffer.subarray(asOffset, buffer.indexOf(0, asOffset)).toString()\n : '',\n }\n }\n\n private _isBigEndian(buffer: Buffer) {\n let ret = buffer.readInt32LE(0)\n if (ret === BIG_WIG_MAGIC || ret === BIG_BED_MAGIC) {\n return false\n }\n ret = buffer.readInt32BE(0)\n if (ret === BIG_WIG_MAGIC || ret === BIG_BED_MAGIC) {\n return true\n }\n throw new Error('not a BigWig/BigBed file')\n }\n\n // todo: add progress if long running\n private async _readChromTree(\n header: MainHeader,\n opts?: { signal?: AbortSignal },\n ) {\n const isBE = header.isBigEndian\n const le = !isBE\n const refsByNumber: Record<\n number,\n { name: string; id: number; length: number }\n > = []\n const refsByName: Record = {}\n\n let unzoomedDataOffset = header.unzoomedDataOffset\n const chromTreeOffset = header.chromTreeOffset\n while (unzoomedDataOffset % 4 !== 0) {\n unzoomedDataOffset += 1\n }\n const off = unzoomedDataOffset - chromTreeOffset\n const { buffer } = await this.bbi.read(\n Buffer.alloc(off),\n 0,\n off,\n Number(chromTreeOffset),\n opts,\n )\n\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n // const magic = dataView.getUint32(offset, le)\n offset += 4\n // const blockSize = dataView.getUint32(offset, le)\n offset += 4\n const keySize = dataView.getUint32(offset, le)\n offset += 4\n // const valSize = dataView.getUint32(offset, le)\n offset += 4\n // const itemCount = dataView.getBigUint64(offset, le)\n offset += 8\n\n const rootNodeOffset = 32\n const bptReadNode = async (currentOffset: number) => {\n let offset = currentOffset\n if (offset >= buffer.length) {\n throw new Error('reading beyond end of buffer')\n }\n const isLeafNode = dataView.getUint8(offset)\n offset += 2 //skip 1\n const cnt = dataView.getUint16(offset, le)\n offset += 2\n if (isLeafNode) {\n for (let n = 0; n < cnt; n++) {\n const key = buffer\n .subarray(offset, offset + keySize)\n .toString()\n .replaceAll('\\0', '')\n offset += keySize\n const refId = dataView.getUint32(offset, le)\n offset += 4\n const refSize = dataView.getUint32(offset, le)\n offset += 4\n\n const refRec = { name: key, id: refId, length: refSize }\n refsByName[this.renameRefSeqs(key)] = refId\n refsByNumber[refId] = refRec\n }\n } else {\n // parse index node\n const nextNodes = []\n for (let n = 0; n < cnt; n++) {\n offset += keySize\n const childOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n nextNodes.push(\n bptReadNode(Number(childOffset) - Number(chromTreeOffset)),\n )\n }\n await Promise.all(nextNodes)\n }\n }\n await bptReadNode(rootNodeOffset)\n return {\n refsByName,\n refsByNumber,\n }\n }\n\n /*\n * fetches the \"unzoomed\" view of the bigwig data. this is the default for bigbed\n * @param abortSignal - a signal to optionally abort this operation\n */\n protected async getUnzoomedView(opts?: RequestOptions) {\n const {\n unzoomedIndexOffset,\n refsByName,\n uncompressBufSize,\n isBigEndian,\n fileType,\n } = await this.getHeader(opts)\n return new BlockView(\n this.bbi,\n refsByName,\n unzoomedIndexOffset,\n isBigEndian,\n uncompressBufSize > 0,\n fileType,\n )\n }\n\n /*\n * abstract method - get the view for a given scale\n */\n protected abstract getView(\n scale: number,\n opts?: RequestOptions,\n ): Promise\n\n /**\n * Gets features from a BigWig file\n *\n * @param refName - The chromosome name\n * @param start - The start of a region\n * @param end - The end of a region\n * @param opts - An object containing basesPerSpan (e.g. pixels per basepair) or scale used to infer the zoomLevel to use\n */\n public async getFeatureStream(\n refName: string,\n start: number,\n end: number,\n opts?: RequestOptions & { scale?: number; basesPerSpan?: number },\n ) {\n await this.getHeader(opts)\n const chrName = this.renameRefSeqs(refName)\n let view: BlockView\n const { basesPerSpan, scale } = opts || {}\n\n if (basesPerSpan) {\n view = await this.getView(1 / basesPerSpan, opts)\n } else if (scale) {\n view = await this.getView(scale, opts)\n } else {\n view = await this.getView(1, opts)\n }\n\n return new Observable(observer => {\n view\n .readWigData(chrName, start, end, observer, opts)\n .catch((e: unknown) => {\n observer.error(e)\n })\n })\n }\n\n public async getFeatures(\n refName: string,\n start: number,\n end: number,\n opts?: RequestOptions & { scale?: number; basesPerSpan?: number },\n ) {\n const ob = await this.getFeatureStream(refName, start, end, opts)\n\n const ret = await firstValueFrom(ob.pipe(toArray()))\n return ret.flat()\n }\n}\n","import { BlockView } from './block-view'\nimport { BBI, RequestOptions } from './bbi'\n\nexport class BigWig extends BBI {\n /**\n * Retrieves a BlockView of a specific zoomLevel\n *\n * @param scale - number\n *\n * @param opts - An object containing basesPerSpan (e.g. pixels per basepair)\n * or scale used to infer the zoomLevel to use\n */\n protected async getView(scale: number, opts: RequestOptions) {\n const { zoomLevels, refsByName, isBigEndian, uncompressBufSize } =\n await this.getHeader(opts)\n const basesPerPx = 1 / scale\n const maxLevel = zoomLevels.length - 1\n\n for (let i = maxLevel; i >= 0; i -= 1) {\n const zh = zoomLevels[i]\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n if (zh && zh.reductionLevel <= 2 * basesPerPx) {\n return new BlockView(\n this.bbi,\n refsByName,\n zh.indexOffset,\n isBigEndian,\n uncompressBufSize > 0,\n 'summary',\n )\n }\n }\n return this.getUnzoomedView(opts)\n }\n}\n","import { Buffer } from 'buffer'\nimport { Observable, merge, firstValueFrom } from 'rxjs'\nimport { map, reduce } from 'rxjs/operators'\nimport AbortablePromiseCache from '@gmod/abortable-promise-cache'\nimport QuickLRU from 'quick-lru'\n\n// locals\nimport { BBI, Feature, RequestOptions } from './bbi'\n\ninterface Loc {\n key: string\n offset: number\n length: number\n field?: number\n}\n\ninterface Index {\n type: number\n fieldcount: number\n offset: number\n field: number\n}\n\nexport function filterUndef(ts: (T | undefined)[]): T[] {\n return ts.filter((t: T | undefined): t is T => !!t)\n}\n\nexport class BigBed extends BBI {\n public readIndicesCache = new AbortablePromiseCache({\n cache: new QuickLRU({ maxSize: 1 }),\n fill: (args: RequestOptions, signal?: AbortSignal) =>\n this._readIndices({ ...args, signal }),\n })\n\n public readIndices(opts: RequestOptions = {}) {\n const { signal, ...rest } = opts\n return this.readIndicesCache.get(JSON.stringify(rest), opts, signal)\n }\n\n /*\n * retrieve unzoomed view for any scale\n */\n protected async getView(_scale: number, opts?: RequestOptions) {\n return this.getUnzoomedView(opts)\n }\n\n /*\n * parse the bigbed extraIndex fields\n *\n *\n * @return a Promise for an array of Index data structure since there can be\n * multiple extraIndexes in a bigbed, see bedToBigBed documentation\n */\n private async _readIndices(opts: RequestOptions) {\n const { extHeaderOffset, isBigEndian } = await this.getHeader(opts)\n const { buffer: data } = await this.bbi.read(\n Buffer.alloc(64),\n 0,\n 64,\n Number(extHeaderOffset),\n )\n const le = !isBigEndian\n\n const b = data\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n // const _size = dataView.getUint16(offset, le)\n offset += 2\n const count = dataView.getUint16(offset, le)\n offset += 2\n const dataOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n\n // no extra index is defined if count==0\n if (count === 0) {\n return []\n }\n\n const blocklen = 20\n const len = blocklen * count\n const { buffer } = await this.bbi.read(\n Buffer.alloc(len),\n 0,\n len,\n Number(dataOffset),\n )\n\n const indices = [] as Index[]\n\n for (let i = 0; i < count; i += 1) {\n const b = buffer.subarray(i * blocklen)\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n const type = dataView.getInt16(offset, le)\n offset += 2\n const fieldcount = dataView.getInt16(offset, le)\n offset += 2\n const dataOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8 + 4 //4 skip\n const field = dataView.getInt16(offset, le)\n indices.push({ type, fieldcount, offset: Number(dataOffset), field })\n }\n return indices\n }\n\n /*\n * perform a search in the bigbed extraIndex to find which blocks in the\n * bigbed data to look for the actual feature data\n *\n * @param name - the name to search for\n * @param opts - a SearchOptions argument with optional signal\n * @return a Promise for an array of bigbed block Loc entries\n */\n private async searchExtraIndexBlocks(\n name: string,\n opts: RequestOptions = {},\n ): Promise {\n const { isBigEndian } = await this.getHeader(opts)\n const indices = await this.readIndices(opts)\n if (indices.length === 0) {\n return []\n }\n const locs = indices.map(async (index): Promise => {\n const { offset: offset2, field } = index\n const { buffer: data } = await this.bbi.read(\n Buffer.alloc(32),\n 0,\n 32,\n offset2,\n opts,\n )\n const le = !isBigEndian\n const b = data\n\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n // const _magic = dataView.getInt32(offset, le)\n offset += 4\n const blockSize = dataView.getInt32(offset, le)\n offset += 4\n const keySize = dataView.getInt32(offset, le)\n offset += 4\n const valSize = dataView.getInt32(offset, le)\n offset += 4\n // const _itemCount = Number(dataView.getBigUint64(offset, le))\n offset += 8\n\n const bptReadNode = async (nodeOffset: number) => {\n const val = Number(nodeOffset)\n const len = 4 + blockSize * (keySize + valSize)\n const { buffer } = await this.bbi.read(\n Buffer.alloc(len),\n 0,\n len,\n val,\n opts,\n )\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n const nodeType = dataView.getInt8(offset)\n offset += 2 //skip 1\n const cnt = dataView.getInt16(offset, le)\n offset += 2\n const keys = []\n if (nodeType === 0) {\n const leafkeys = []\n for (let i = 0; i < cnt; i++) {\n const key = b\n .subarray(offset, offset + keySize)\n .toString()\n .replaceAll('\\0', '')\n offset += keySize\n const dataOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n leafkeys.push({ key, offset: dataOffset })\n }\n\n let lastOffset = 0\n for (const { key, offset } of leafkeys) {\n if (name.localeCompare(key) < 0 && lastOffset) {\n return bptReadNode(lastOffset)\n }\n lastOffset = offset\n }\n return bptReadNode(lastOffset)\n } else if (nodeType === 1) {\n for (let i = 0; i < cnt; i++) {\n const key = b\n .subarray(offset, offset + keySize)\n .toString()\n .replaceAll('\\0', '')\n offset += keySize\n const dataOffset = Number(dataView.getBigUint64(offset, le))\n offset += 8\n const length = dataView.getUint32(offset, le)\n offset += 4\n const reserved = dataView.getUint32(offset, le)\n offset += 4\n keys.push({ key, offset: dataOffset, length, reserved })\n }\n\n for (const n of keys) {\n if (n.key === name) {\n return { ...n, field }\n }\n }\n\n return undefined\n }\n }\n const rootNodeOffset = 32\n return bptReadNode(offset2 + rootNodeOffset)\n })\n return filterUndef(await Promise.all(locs))\n }\n\n /*\n * retrieve the features from the bigbed data that were found through the\n * lookup of the extraIndex note that there can be multiple extraIndex, see\n * the BigBed specification and the -extraIndex argument to bedToBigBed\n *\n * @param name - the name to search for\n * @param opts - a SearchOptions argument with optional signal\n * @return a Promise for an array of Feature\n */\n public async searchExtraIndex(name: string, opts: RequestOptions = {}) {\n const blocks = await this.searchExtraIndexBlocks(name, opts)\n if (blocks.length === 0) {\n return []\n }\n const view = await this.getUnzoomedView(opts)\n const res = blocks.map(block => {\n return new Observable(observer => {\n view.readFeatures(observer, [block], opts).catch((e: unknown) => {\n observer.error(e)\n })\n }).pipe(\n reduce((acc, curr) => acc.concat(curr)),\n map(x => {\n for (const element of x) {\n element.field = block.field\n }\n return x\n }),\n )\n })\n const ret = await firstValueFrom(merge(...res))\n return ret.filter(f => f.rest?.split('\\t')[(f.field || 0) - 3] === name)\n }\n}\n","/*!\n * The buffer module from node.js, for the browser.\n *\n * @author Feross Aboukhadijeh \n * @license MIT\n */\n/* eslint-disable no-proto */\n\n'use strict'\n\nconst base64 = require('base64-js')\nconst ieee754 = require('ieee754')\nconst customInspectSymbol =\n (typeof Symbol === 'function' && typeof Symbol['for'] === 'function') // eslint-disable-line dot-notation\n ? Symbol['for']('nodejs.util.inspect.custom') // eslint-disable-line dot-notation\n : null\n\nexports.Buffer = Buffer\nexports.SlowBuffer = SlowBuffer\nexports.INSPECT_MAX_BYTES = 50\n\nconst K_MAX_LENGTH = 0x7fffffff\nexports.kMaxLength = K_MAX_LENGTH\n\n/**\n * If `Buffer.TYPED_ARRAY_SUPPORT`:\n * === true Use Uint8Array implementation (fastest)\n * === false Print warning and recommend using `buffer` v4.x which has an Object\n * implementation (most compatible, even IE6)\n *\n * Browsers that support typed arrays are IE 10+, Firefox 4+, Chrome 7+, Safari 5.1+,\n * Opera 11.6+, iOS 4.2+.\n *\n * We report that the browser does not support typed arrays if the are not subclassable\n * using __proto__. Firefox 4-29 lacks support for adding new properties to `Uint8Array`\n * (See: https://bugzilla.mozilla.org/show_bug.cgi?id=695438). IE 10 lacks support\n * for __proto__ and has a buggy typed array implementation.\n */\nBuffer.TYPED_ARRAY_SUPPORT = typedArraySupport()\n\nif (!Buffer.TYPED_ARRAY_SUPPORT && typeof console !== 'undefined' &&\n typeof console.error === 'function') {\n console.error(\n 'This browser lacks typed array (Uint8Array) support which is required by ' +\n '`buffer` v5.x. Use `buffer` v4.x if you require old browser support.'\n )\n}\n\nfunction typedArraySupport () {\n // Can typed array instances can be augmented?\n try {\n const arr = new Uint8Array(1)\n const proto = { foo: function () { return 42 } }\n Object.setPrototypeOf(proto, Uint8Array.prototype)\n Object.setPrototypeOf(arr, proto)\n return arr.foo() === 42\n } catch (e) {\n return false\n }\n}\n\nObject.defineProperty(Buffer.prototype, 'parent', {\n enumerable: true,\n get: function () {\n if (!Buffer.isBuffer(this)) return undefined\n return this.buffer\n }\n})\n\nObject.defineProperty(Buffer.prototype, 'offset', {\n enumerable: true,\n get: function () {\n if (!Buffer.isBuffer(this)) return undefined\n return this.byteOffset\n }\n})\n\nfunction createBuffer (length) {\n if (length > K_MAX_LENGTH) {\n throw new RangeError('The value \"' + length + '\" is invalid for option \"size\"')\n }\n // Return an augmented `Uint8Array` instance\n const buf = new Uint8Array(length)\n Object.setPrototypeOf(buf, Buffer.prototype)\n return buf\n}\n\n/**\n * The Buffer constructor returns instances of `Uint8Array` that have their\n * prototype changed to `Buffer.prototype`. Furthermore, `Buffer` is a subclass of\n * `Uint8Array`, so the returned instances will have all the node `Buffer` methods\n * and the `Uint8Array` methods. Square bracket notation works as expected -- it\n * returns a single octet.\n *\n * The `Uint8Array` prototype remains unmodified.\n */\n\nfunction Buffer (arg, encodingOrOffset, length) {\n // Common case.\n if (typeof arg === 'number') {\n if (typeof encodingOrOffset === 'string') {\n throw new TypeError(\n 'The \"string\" argument must be of type string. Received type number'\n )\n }\n return allocUnsafe(arg)\n }\n return from(arg, encodingOrOffset, length)\n}\n\nBuffer.poolSize = 8192 // not used by this implementation\n\nfunction from (value, encodingOrOffset, length) {\n if (typeof value === 'string') {\n return fromString(value, encodingOrOffset)\n }\n\n if (ArrayBuffer.isView(value)) {\n return fromArrayView(value)\n }\n\n if (value == null) {\n throw new TypeError(\n 'The first argument must be one of type string, Buffer, ArrayBuffer, Array, ' +\n 'or Array-like Object. Received type ' + (typeof value)\n )\n }\n\n if (isInstance(value, ArrayBuffer) ||\n (value && isInstance(value.buffer, ArrayBuffer))) {\n return fromArrayBuffer(value, encodingOrOffset, length)\n }\n\n if (typeof SharedArrayBuffer !== 'undefined' &&\n (isInstance(value, SharedArrayBuffer) ||\n (value && isInstance(value.buffer, SharedArrayBuffer)))) {\n return fromArrayBuffer(value, encodingOrOffset, length)\n }\n\n if (typeof value === 'number') {\n throw new TypeError(\n 'The \"value\" argument must not be of type number. Received type number'\n )\n }\n\n const valueOf = value.valueOf && value.valueOf()\n if (valueOf != null && valueOf !== value) {\n return Buffer.from(valueOf, encodingOrOffset, length)\n }\n\n const b = fromObject(value)\n if (b) return b\n\n if (typeof Symbol !== 'undefined' && Symbol.toPrimitive != null &&\n typeof value[Symbol.toPrimitive] === 'function') {\n return Buffer.from(value[Symbol.toPrimitive]('string'), encodingOrOffset, length)\n }\n\n throw new TypeError(\n 'The first argument must be one of type string, Buffer, ArrayBuffer, Array, ' +\n 'or Array-like Object. Received type ' + (typeof value)\n )\n}\n\n/**\n * Functionally equivalent to Buffer(arg, encoding) but throws a TypeError\n * if value is a number.\n * Buffer.from(str[, encoding])\n * Buffer.from(array)\n * Buffer.from(buffer)\n * Buffer.from(arrayBuffer[, byteOffset[, length]])\n **/\nBuffer.from = function (value, encodingOrOffset, length) {\n return from(value, encodingOrOffset, length)\n}\n\n// Note: Change prototype *after* Buffer.from is defined to workaround Chrome bug:\n// https://github.com/feross/buffer/pull/148\nObject.setPrototypeOf(Buffer.prototype, Uint8Array.prototype)\nObject.setPrototypeOf(Buffer, Uint8Array)\n\nfunction assertSize (size) {\n if (typeof size !== 'number') {\n throw new TypeError('\"size\" argument must be of type number')\n } else if (size < 0) {\n throw new RangeError('The value \"' + size + '\" is invalid for option \"size\"')\n }\n}\n\nfunction alloc (size, fill, encoding) {\n assertSize(size)\n if (size <= 0) {\n return createBuffer(size)\n }\n if (fill !== undefined) {\n // Only pay attention to encoding if it's a string. This\n // prevents accidentally sending in a number that would\n // be interpreted as a start offset.\n return typeof encoding === 'string'\n ? createBuffer(size).fill(fill, encoding)\n : createBuffer(size).fill(fill)\n }\n return createBuffer(size)\n}\n\n/**\n * Creates a new filled Buffer instance.\n * alloc(size[, fill[, encoding]])\n **/\nBuffer.alloc = function (size, fill, encoding) {\n return alloc(size, fill, encoding)\n}\n\nfunction allocUnsafe (size) {\n assertSize(size)\n return createBuffer(size < 0 ? 0 : checked(size) | 0)\n}\n\n/**\n * Equivalent to Buffer(num), by default creates a non-zero-filled Buffer instance.\n * */\nBuffer.allocUnsafe = function (size) {\n return allocUnsafe(size)\n}\n/**\n * Equivalent to SlowBuffer(num), by default creates a non-zero-filled Buffer instance.\n */\nBuffer.allocUnsafeSlow = function (size) {\n return allocUnsafe(size)\n}\n\nfunction fromString (string, encoding) {\n if (typeof encoding !== 'string' || encoding === '') {\n encoding = 'utf8'\n }\n\n if (!Buffer.isEncoding(encoding)) {\n throw new TypeError('Unknown encoding: ' + encoding)\n }\n\n const length = byteLength(string, encoding) | 0\n let buf = createBuffer(length)\n\n const actual = buf.write(string, encoding)\n\n if (actual !== length) {\n // Writing a hex string, for example, that contains invalid characters will\n // cause everything after the first invalid character to be ignored. (e.g.\n // 'abxxcd' will be treated as 'ab')\n buf = buf.slice(0, actual)\n }\n\n return buf\n}\n\nfunction fromArrayLike (array) {\n const length = array.length < 0 ? 0 : checked(array.length) | 0\n const buf = createBuffer(length)\n for (let i = 0; i < length; i += 1) {\n buf[i] = array[i] & 255\n }\n return buf\n}\n\nfunction fromArrayView (arrayView) {\n if (isInstance(arrayView, Uint8Array)) {\n const copy = new Uint8Array(arrayView)\n return fromArrayBuffer(copy.buffer, copy.byteOffset, copy.byteLength)\n }\n return fromArrayLike(arrayView)\n}\n\nfunction fromArrayBuffer (array, byteOffset, length) {\n if (byteOffset < 0 || array.byteLength < byteOffset) {\n throw new RangeError('\"offset\" is outside of buffer bounds')\n }\n\n if (array.byteLength < byteOffset + (length || 0)) {\n throw new RangeError('\"length\" is outside of buffer bounds')\n }\n\n let buf\n if (byteOffset === undefined && length === undefined) {\n buf = new Uint8Array(array)\n } else if (length === undefined) {\n buf = new Uint8Array(array, byteOffset)\n } else {\n buf = new Uint8Array(array, byteOffset, length)\n }\n\n // Return an augmented `Uint8Array` instance\n Object.setPrototypeOf(buf, Buffer.prototype)\n\n return buf\n}\n\nfunction fromObject (obj) {\n if (Buffer.isBuffer(obj)) {\n const len = checked(obj.length) | 0\n const buf = createBuffer(len)\n\n if (buf.length === 0) {\n return buf\n }\n\n obj.copy(buf, 0, 0, len)\n return buf\n }\n\n if (obj.length !== undefined) {\n if (typeof obj.length !== 'number' || numberIsNaN(obj.length)) {\n return createBuffer(0)\n }\n return fromArrayLike(obj)\n }\n\n if (obj.type === 'Buffer' && Array.isArray(obj.data)) {\n return fromArrayLike(obj.data)\n }\n}\n\nfunction checked (length) {\n // Note: cannot use `length < K_MAX_LENGTH` here because that fails when\n // length is NaN (which is otherwise coerced to zero.)\n if (length >= K_MAX_LENGTH) {\n throw new RangeError('Attempt to allocate Buffer larger than maximum ' +\n 'size: 0x' + K_MAX_LENGTH.toString(16) + ' bytes')\n }\n return length | 0\n}\n\nfunction SlowBuffer (length) {\n if (+length != length) { // eslint-disable-line eqeqeq\n length = 0\n }\n return Buffer.alloc(+length)\n}\n\nBuffer.isBuffer = function isBuffer (b) {\n return b != null && b._isBuffer === true &&\n b !== Buffer.prototype // so Buffer.isBuffer(Buffer.prototype) will be false\n}\n\nBuffer.compare = function compare (a, b) {\n if (isInstance(a, Uint8Array)) a = Buffer.from(a, a.offset, a.byteLength)\n if (isInstance(b, Uint8Array)) b = Buffer.from(b, b.offset, b.byteLength)\n if (!Buffer.isBuffer(a) || !Buffer.isBuffer(b)) {\n throw new TypeError(\n 'The \"buf1\", \"buf2\" arguments must be one of type Buffer or Uint8Array'\n )\n }\n\n if (a === b) return 0\n\n let x = a.length\n let y = b.length\n\n for (let i = 0, len = Math.min(x, y); i < len; ++i) {\n if (a[i] !== b[i]) {\n x = a[i]\n y = b[i]\n break\n }\n }\n\n if (x < y) return -1\n if (y < x) return 1\n return 0\n}\n\nBuffer.isEncoding = function isEncoding (encoding) {\n switch (String(encoding).toLowerCase()) {\n case 'hex':\n case 'utf8':\n case 'utf-8':\n case 'ascii':\n case 'latin1':\n case 'binary':\n case 'base64':\n case 'ucs2':\n case 'ucs-2':\n case 'utf16le':\n case 'utf-16le':\n return true\n default:\n return false\n }\n}\n\nBuffer.concat = function concat (list, length) {\n if (!Array.isArray(list)) {\n throw new TypeError('\"list\" argument must be an Array of Buffers')\n }\n\n if (list.length === 0) {\n return Buffer.alloc(0)\n }\n\n let i\n if (length === undefined) {\n length = 0\n for (i = 0; i < list.length; ++i) {\n length += list[i].length\n }\n }\n\n const buffer = Buffer.allocUnsafe(length)\n let pos = 0\n for (i = 0; i < list.length; ++i) {\n let buf = list[i]\n if (isInstance(buf, Uint8Array)) {\n if (pos + buf.length > buffer.length) {\n if (!Buffer.isBuffer(buf)) buf = Buffer.from(buf)\n buf.copy(buffer, pos)\n } else {\n Uint8Array.prototype.set.call(\n buffer,\n buf,\n pos\n )\n }\n } else if (!Buffer.isBuffer(buf)) {\n throw new TypeError('\"list\" argument must be an Array of Buffers')\n } else {\n buf.copy(buffer, pos)\n }\n pos += buf.length\n }\n return buffer\n}\n\nfunction byteLength (string, encoding) {\n if (Buffer.isBuffer(string)) {\n return string.length\n }\n if (ArrayBuffer.isView(string) || isInstance(string, ArrayBuffer)) {\n return string.byteLength\n }\n if (typeof string !== 'string') {\n throw new TypeError(\n 'The \"string\" argument must be one of type string, Buffer, or ArrayBuffer. ' +\n 'Received type ' + typeof string\n )\n }\n\n const len = string.length\n const mustMatch = (arguments.length > 2 && arguments[2] === true)\n if (!mustMatch && len === 0) return 0\n\n // Use a for loop to avoid recursion\n let loweredCase = false\n for (;;) {\n switch (encoding) {\n case 'ascii':\n case 'latin1':\n case 'binary':\n return len\n case 'utf8':\n case 'utf-8':\n return utf8ToBytes(string).length\n case 'ucs2':\n case 'ucs-2':\n case 'utf16le':\n case 'utf-16le':\n return len * 2\n case 'hex':\n return len >>> 1\n case 'base64':\n return base64ToBytes(string).length\n default:\n if (loweredCase) {\n return mustMatch ? -1 : utf8ToBytes(string).length // assume utf8\n }\n encoding = ('' + encoding).toLowerCase()\n loweredCase = true\n }\n }\n}\nBuffer.byteLength = byteLength\n\nfunction slowToString (encoding, start, end) {\n let loweredCase = false\n\n // No need to verify that \"this.length <= MAX_UINT32\" since it's a read-only\n // property of a typed array.\n\n // This behaves neither like String nor Uint8Array in that we set start/end\n // to their upper/lower bounds if the value passed is out of range.\n // undefined is handled specially as per ECMA-262 6th Edition,\n // Section 13.3.3.7 Runtime Semantics: KeyedBindingInitialization.\n if (start === undefined || start < 0) {\n start = 0\n }\n // Return early if start > this.length. Done here to prevent potential uint32\n // coercion fail below.\n if (start > this.length) {\n return ''\n }\n\n if (end === undefined || end > this.length) {\n end = this.length\n }\n\n if (end <= 0) {\n return ''\n }\n\n // Force coercion to uint32. This will also coerce falsey/NaN values to 0.\n end >>>= 0\n start >>>= 0\n\n if (end <= start) {\n return ''\n }\n\n if (!encoding) encoding = 'utf8'\n\n while (true) {\n switch (encoding) {\n case 'hex':\n return hexSlice(this, start, end)\n\n case 'utf8':\n case 'utf-8':\n return utf8Slice(this, start, end)\n\n case 'ascii':\n return asciiSlice(this, start, end)\n\n case 'latin1':\n case 'binary':\n return latin1Slice(this, start, end)\n\n case 'base64':\n return base64Slice(this, start, end)\n\n case 'ucs2':\n case 'ucs-2':\n case 'utf16le':\n case 'utf-16le':\n return utf16leSlice(this, start, end)\n\n default:\n if (loweredCase) throw new TypeError('Unknown encoding: ' + encoding)\n encoding = (encoding + '').toLowerCase()\n loweredCase = true\n }\n }\n}\n\n// This property is used by `Buffer.isBuffer` (and the `is-buffer` npm package)\n// to detect a Buffer instance. It's not possible to use `instanceof Buffer`\n// reliably in a browserify context because there could be multiple different\n// copies of the 'buffer' package in use. This method works even for Buffer\n// instances that were created from another copy of the `buffer` package.\n// See: https://github.com/feross/buffer/issues/154\nBuffer.prototype._isBuffer = true\n\nfunction swap (b, n, m) {\n const i = b[n]\n b[n] = b[m]\n b[m] = i\n}\n\nBuffer.prototype.swap16 = function swap16 () {\n const len = this.length\n if (len % 2 !== 0) {\n throw new RangeError('Buffer size must be a multiple of 16-bits')\n }\n for (let i = 0; i < len; i += 2) {\n swap(this, i, i + 1)\n }\n return this\n}\n\nBuffer.prototype.swap32 = function swap32 () {\n const len = this.length\n if (len % 4 !== 0) {\n throw new RangeError('Buffer size must be a multiple of 32-bits')\n }\n for (let i = 0; i < len; i += 4) {\n swap(this, i, i + 3)\n swap(this, i + 1, i + 2)\n }\n return this\n}\n\nBuffer.prototype.swap64 = function swap64 () {\n const len = this.length\n if (len % 8 !== 0) {\n throw new RangeError('Buffer size must be a multiple of 64-bits')\n }\n for (let i = 0; i < len; i += 8) {\n swap(this, i, i + 7)\n swap(this, i + 1, i + 6)\n swap(this, i + 2, i + 5)\n swap(this, i + 3, i + 4)\n }\n return this\n}\n\nBuffer.prototype.toString = function toString () {\n const length = this.length\n if (length === 0) return ''\n if (arguments.length === 0) return utf8Slice(this, 0, length)\n return slowToString.apply(this, arguments)\n}\n\nBuffer.prototype.toLocaleString = Buffer.prototype.toString\n\nBuffer.prototype.equals = function equals (b) {\n if (!Buffer.isBuffer(b)) throw new TypeError('Argument must be a Buffer')\n if (this === b) return true\n return Buffer.compare(this, b) === 0\n}\n\nBuffer.prototype.inspect = function inspect () {\n let str = ''\n const max = exports.INSPECT_MAX_BYTES\n str = this.toString('hex', 0, max).replace(/(.{2})/g, '$1 ').trim()\n if (this.length > max) str += ' ... '\n return ''\n}\nif (customInspectSymbol) {\n Buffer.prototype[customInspectSymbol] = Buffer.prototype.inspect\n}\n\nBuffer.prototype.compare = function compare (target, start, end, thisStart, thisEnd) {\n if (isInstance(target, Uint8Array)) {\n target = Buffer.from(target, target.offset, target.byteLength)\n }\n if (!Buffer.isBuffer(target)) {\n throw new TypeError(\n 'The \"target\" argument must be one of type Buffer or Uint8Array. ' +\n 'Received type ' + (typeof target)\n )\n }\n\n if (start === undefined) {\n start = 0\n }\n if (end === undefined) {\n end = target ? target.length : 0\n }\n if (thisStart === undefined) {\n thisStart = 0\n }\n if (thisEnd === undefined) {\n thisEnd = this.length\n }\n\n if (start < 0 || end > target.length || thisStart < 0 || thisEnd > this.length) {\n throw new RangeError('out of range index')\n }\n\n if (thisStart >= thisEnd && start >= end) {\n return 0\n }\n if (thisStart >= thisEnd) {\n return -1\n }\n if (start >= end) {\n return 1\n }\n\n start >>>= 0\n end >>>= 0\n thisStart >>>= 0\n thisEnd >>>= 0\n\n if (this === target) return 0\n\n let x = thisEnd - thisStart\n let y = end - start\n const len = Math.min(x, y)\n\n const thisCopy = this.slice(thisStart, thisEnd)\n const targetCopy = target.slice(start, end)\n\n for (let i = 0; i < len; ++i) {\n if (thisCopy[i] !== targetCopy[i]) {\n x = thisCopy[i]\n y = targetCopy[i]\n break\n }\n }\n\n if (x < y) return -1\n if (y < x) return 1\n return 0\n}\n\n// Finds either the first index of `val` in `buffer` at offset >= `byteOffset`,\n// OR the last index of `val` in `buffer` at offset <= `byteOffset`.\n//\n// Arguments:\n// - buffer - a Buffer to search\n// - val - a string, Buffer, or number\n// - byteOffset - an index into `buffer`; will be clamped to an int32\n// - encoding - an optional encoding, relevant is val is a string\n// - dir - true for indexOf, false for lastIndexOf\nfunction bidirectionalIndexOf (buffer, val, byteOffset, encoding, dir) {\n // Empty buffer means no match\n if (buffer.length === 0) return -1\n\n // Normalize byteOffset\n if (typeof byteOffset === 'string') {\n encoding = byteOffset\n byteOffset = 0\n } else if (byteOffset > 0x7fffffff) {\n byteOffset = 0x7fffffff\n } else if (byteOffset < -0x80000000) {\n byteOffset = -0x80000000\n }\n byteOffset = +byteOffset // Coerce to Number.\n if (numberIsNaN(byteOffset)) {\n // byteOffset: it it's undefined, null, NaN, \"foo\", etc, search whole buffer\n byteOffset = dir ? 0 : (buffer.length - 1)\n }\n\n // Normalize byteOffset: negative offsets start from the end of the buffer\n if (byteOffset < 0) byteOffset = buffer.length + byteOffset\n if (byteOffset >= buffer.length) {\n if (dir) return -1\n else byteOffset = buffer.length - 1\n } else if (byteOffset < 0) {\n if (dir) byteOffset = 0\n else return -1\n }\n\n // Normalize val\n if (typeof val === 'string') {\n val = Buffer.from(val, encoding)\n }\n\n // Finally, search either indexOf (if dir is true) or lastIndexOf\n if (Buffer.isBuffer(val)) {\n // Special case: looking for empty string/buffer always fails\n if (val.length === 0) {\n return -1\n }\n return arrayIndexOf(buffer, val, byteOffset, encoding, dir)\n } else if (typeof val === 'number') {\n val = val & 0xFF // Search for a byte value [0-255]\n if (typeof Uint8Array.prototype.indexOf === 'function') {\n if (dir) {\n return Uint8Array.prototype.indexOf.call(buffer, val, byteOffset)\n } else {\n return Uint8Array.prototype.lastIndexOf.call(buffer, val, byteOffset)\n }\n }\n return arrayIndexOf(buffer, [val], byteOffset, encoding, dir)\n }\n\n throw new TypeError('val must be string, number or Buffer')\n}\n\nfunction arrayIndexOf (arr, val, byteOffset, encoding, dir) {\n let indexSize = 1\n let arrLength = arr.length\n let valLength = val.length\n\n if (encoding !== undefined) {\n encoding = String(encoding).toLowerCase()\n if (encoding === 'ucs2' || encoding === 'ucs-2' ||\n encoding === 'utf16le' || encoding === 'utf-16le') {\n if (arr.length < 2 || val.length < 2) {\n return -1\n }\n indexSize = 2\n arrLength /= 2\n valLength /= 2\n byteOffset /= 2\n }\n }\n\n function read (buf, i) {\n if (indexSize === 1) {\n return buf[i]\n } else {\n return buf.readUInt16BE(i * indexSize)\n }\n }\n\n let i\n if (dir) {\n let foundIndex = -1\n for (i = byteOffset; i < arrLength; i++) {\n if (read(arr, i) === read(val, foundIndex === -1 ? 0 : i - foundIndex)) {\n if (foundIndex === -1) foundIndex = i\n if (i - foundIndex + 1 === valLength) return foundIndex * indexSize\n } else {\n if (foundIndex !== -1) i -= i - foundIndex\n foundIndex = -1\n }\n }\n } else {\n if (byteOffset + valLength > arrLength) byteOffset = arrLength - valLength\n for (i = byteOffset; i >= 0; i--) {\n let found = true\n for (let j = 0; j < valLength; j++) {\n if (read(arr, i + j) !== read(val, j)) {\n found = false\n break\n }\n }\n if (found) return i\n }\n }\n\n return -1\n}\n\nBuffer.prototype.includes = function includes (val, byteOffset, encoding) {\n return this.indexOf(val, byteOffset, encoding) !== -1\n}\n\nBuffer.prototype.indexOf = function indexOf (val, byteOffset, encoding) {\n return bidirectionalIndexOf(this, val, byteOffset, encoding, true)\n}\n\nBuffer.prototype.lastIndexOf = function lastIndexOf (val, byteOffset, encoding) {\n return bidirectionalIndexOf(this, val, byteOffset, encoding, false)\n}\n\nfunction hexWrite (buf, string, offset, length) {\n offset = Number(offset) || 0\n const remaining = buf.length - offset\n if (!length) {\n length = remaining\n } else {\n length = Number(length)\n if (length > remaining) {\n length = remaining\n }\n }\n\n const strLen = string.length\n\n if (length > strLen / 2) {\n length = strLen / 2\n }\n let i\n for (i = 0; i < length; ++i) {\n const parsed = parseInt(string.substr(i * 2, 2), 16)\n if (numberIsNaN(parsed)) return i\n buf[offset + i] = parsed\n }\n return i\n}\n\nfunction utf8Write (buf, string, offset, length) {\n return blitBuffer(utf8ToBytes(string, buf.length - offset), buf, offset, length)\n}\n\nfunction asciiWrite (buf, string, offset, length) {\n return blitBuffer(asciiToBytes(string), buf, offset, length)\n}\n\nfunction base64Write (buf, string, offset, length) {\n return blitBuffer(base64ToBytes(string), buf, offset, length)\n}\n\nfunction ucs2Write (buf, string, offset, length) {\n return blitBuffer(utf16leToBytes(string, buf.length - offset), buf, offset, length)\n}\n\nBuffer.prototype.write = function write (string, offset, length, encoding) {\n // Buffer#write(string)\n if (offset === undefined) {\n encoding = 'utf8'\n length = this.length\n offset = 0\n // Buffer#write(string, encoding)\n } else if (length === undefined && typeof offset === 'string') {\n encoding = offset\n length = this.length\n offset = 0\n // Buffer#write(string, offset[, length][, encoding])\n } else if (isFinite(offset)) {\n offset = offset >>> 0\n if (isFinite(length)) {\n length = length >>> 0\n if (encoding === undefined) encoding = 'utf8'\n } else {\n encoding = length\n length = undefined\n }\n } else {\n throw new Error(\n 'Buffer.write(string, encoding, offset[, length]) is no longer supported'\n )\n }\n\n const remaining = this.length - offset\n if (length === undefined || length > remaining) length = remaining\n\n if ((string.length > 0 && (length < 0 || offset < 0)) || offset > this.length) {\n throw new RangeError('Attempt to write outside buffer bounds')\n }\n\n if (!encoding) encoding = 'utf8'\n\n let loweredCase = false\n for (;;) {\n switch (encoding) {\n case 'hex':\n return hexWrite(this, string, offset, length)\n\n case 'utf8':\n case 'utf-8':\n return utf8Write(this, string, offset, length)\n\n case 'ascii':\n case 'latin1':\n case 'binary':\n return asciiWrite(this, string, offset, length)\n\n case 'base64':\n // Warning: maxLength not taken into account in base64Write\n return base64Write(this, string, offset, length)\n\n case 'ucs2':\n case 'ucs-2':\n case 'utf16le':\n case 'utf-16le':\n return ucs2Write(this, string, offset, length)\n\n default:\n if (loweredCase) throw new TypeError('Unknown encoding: ' + encoding)\n encoding = ('' + encoding).toLowerCase()\n loweredCase = true\n }\n }\n}\n\nBuffer.prototype.toJSON = function toJSON () {\n return {\n type: 'Buffer',\n data: Array.prototype.slice.call(this._arr || this, 0)\n }\n}\n\nfunction base64Slice (buf, start, end) {\n if (start === 0 && end === buf.length) {\n return base64.fromByteArray(buf)\n } else {\n return base64.fromByteArray(buf.slice(start, end))\n }\n}\n\nfunction utf8Slice (buf, start, end) {\n end = Math.min(buf.length, end)\n const res = []\n\n let i = start\n while (i < end) {\n const firstByte = buf[i]\n let codePoint = null\n let bytesPerSequence = (firstByte > 0xEF)\n ? 4\n : (firstByte > 0xDF)\n ? 3\n : (firstByte > 0xBF)\n ? 2\n : 1\n\n if (i + bytesPerSequence <= end) {\n let secondByte, thirdByte, fourthByte, tempCodePoint\n\n switch (bytesPerSequence) {\n case 1:\n if (firstByte < 0x80) {\n codePoint = firstByte\n }\n break\n case 2:\n secondByte = buf[i + 1]\n if ((secondByte & 0xC0) === 0x80) {\n tempCodePoint = (firstByte & 0x1F) << 0x6 | (secondByte & 0x3F)\n if (tempCodePoint > 0x7F) {\n codePoint = tempCodePoint\n }\n }\n break\n case 3:\n secondByte = buf[i + 1]\n thirdByte = buf[i + 2]\n if ((secondByte & 0xC0) === 0x80 && (thirdByte & 0xC0) === 0x80) {\n tempCodePoint = (firstByte & 0xF) << 0xC | (secondByte & 0x3F) << 0x6 | (thirdByte & 0x3F)\n if (tempCodePoint > 0x7FF && (tempCodePoint < 0xD800 || tempCodePoint > 0xDFFF)) {\n codePoint = tempCodePoint\n }\n }\n break\n case 4:\n secondByte = buf[i + 1]\n thirdByte = buf[i + 2]\n fourthByte = buf[i + 3]\n if ((secondByte & 0xC0) === 0x80 && (thirdByte & 0xC0) === 0x80 && (fourthByte & 0xC0) === 0x80) {\n tempCodePoint = (firstByte & 0xF) << 0x12 | (secondByte & 0x3F) << 0xC | (thirdByte & 0x3F) << 0x6 | (fourthByte & 0x3F)\n if (tempCodePoint > 0xFFFF && tempCodePoint < 0x110000) {\n codePoint = tempCodePoint\n }\n }\n }\n }\n\n if (codePoint === null) {\n // we did not generate a valid codePoint so insert a\n // replacement char (U+FFFD) and advance only 1 byte\n codePoint = 0xFFFD\n bytesPerSequence = 1\n } else if (codePoint > 0xFFFF) {\n // encode to utf16 (surrogate pair dance)\n codePoint -= 0x10000\n res.push(codePoint >>> 10 & 0x3FF | 0xD800)\n codePoint = 0xDC00 | codePoint & 0x3FF\n }\n\n res.push(codePoint)\n i += bytesPerSequence\n }\n\n return decodeCodePointsArray(res)\n}\n\n// Based on http://stackoverflow.com/a/22747272/680742, the browser with\n// the lowest limit is Chrome, with 0x10000 args.\n// We go 1 magnitude less, for safety\nconst MAX_ARGUMENTS_LENGTH = 0x1000\n\nfunction decodeCodePointsArray (codePoints) {\n const len = codePoints.length\n if (len <= MAX_ARGUMENTS_LENGTH) {\n return String.fromCharCode.apply(String, codePoints) // avoid extra slice()\n }\n\n // Decode in chunks to avoid \"call stack size exceeded\".\n let res = ''\n let i = 0\n while (i < len) {\n res += String.fromCharCode.apply(\n String,\n codePoints.slice(i, i += MAX_ARGUMENTS_LENGTH)\n )\n }\n return res\n}\n\nfunction asciiSlice (buf, start, end) {\n let ret = ''\n end = Math.min(buf.length, end)\n\n for (let i = start; i < end; ++i) {\n ret += String.fromCharCode(buf[i] & 0x7F)\n }\n return ret\n}\n\nfunction latin1Slice (buf, start, end) {\n let ret = ''\n end = Math.min(buf.length, end)\n\n for (let i = start; i < end; ++i) {\n ret += String.fromCharCode(buf[i])\n }\n return ret\n}\n\nfunction hexSlice (buf, start, end) {\n const len = buf.length\n\n if (!start || start < 0) start = 0\n if (!end || end < 0 || end > len) end = len\n\n let out = ''\n for (let i = start; i < end; ++i) {\n out += hexSliceLookupTable[buf[i]]\n }\n return out\n}\n\nfunction utf16leSlice (buf, start, end) {\n const bytes = buf.slice(start, end)\n let res = ''\n // If bytes.length is odd, the last 8 bits must be ignored (same as node.js)\n for (let i = 0; i < bytes.length - 1; i += 2) {\n res += String.fromCharCode(bytes[i] + (bytes[i + 1] * 256))\n }\n return res\n}\n\nBuffer.prototype.slice = function slice (start, end) {\n const len = this.length\n start = ~~start\n end = end === undefined ? len : ~~end\n\n if (start < 0) {\n start += len\n if (start < 0) start = 0\n } else if (start > len) {\n start = len\n }\n\n if (end < 0) {\n end += len\n if (end < 0) end = 0\n } else if (end > len) {\n end = len\n }\n\n if (end < start) end = start\n\n const newBuf = this.subarray(start, end)\n // Return an augmented `Uint8Array` instance\n Object.setPrototypeOf(newBuf, Buffer.prototype)\n\n return newBuf\n}\n\n/*\n * Need to make sure that buffer isn't trying to write out of bounds.\n */\nfunction checkOffset (offset, ext, length) {\n if ((offset % 1) !== 0 || offset < 0) throw new RangeError('offset is not uint')\n if (offset + ext > length) throw new RangeError('Trying to access beyond buffer length')\n}\n\nBuffer.prototype.readUintLE =\nBuffer.prototype.readUIntLE = function readUIntLE (offset, byteLength, noAssert) {\n offset = offset >>> 0\n byteLength = byteLength >>> 0\n if (!noAssert) checkOffset(offset, byteLength, this.length)\n\n let val = this[offset]\n let mul = 1\n let i = 0\n while (++i < byteLength && (mul *= 0x100)) {\n val += this[offset + i] * mul\n }\n\n return val\n}\n\nBuffer.prototype.readUintBE =\nBuffer.prototype.readUIntBE = function readUIntBE (offset, byteLength, noAssert) {\n offset = offset >>> 0\n byteLength = byteLength >>> 0\n if (!noAssert) {\n checkOffset(offset, byteLength, this.length)\n }\n\n let val = this[offset + --byteLength]\n let mul = 1\n while (byteLength > 0 && (mul *= 0x100)) {\n val += this[offset + --byteLength] * mul\n }\n\n return val\n}\n\nBuffer.prototype.readUint8 =\nBuffer.prototype.readUInt8 = function readUInt8 (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 1, this.length)\n return this[offset]\n}\n\nBuffer.prototype.readUint16LE =\nBuffer.prototype.readUInt16LE = function readUInt16LE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 2, this.length)\n return this[offset] | (this[offset + 1] << 8)\n}\n\nBuffer.prototype.readUint16BE =\nBuffer.prototype.readUInt16BE = function readUInt16BE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 2, this.length)\n return (this[offset] << 8) | this[offset + 1]\n}\n\nBuffer.prototype.readUint32LE =\nBuffer.prototype.readUInt32LE = function readUInt32LE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 4, this.length)\n\n return ((this[offset]) |\n (this[offset + 1] << 8) |\n (this[offset + 2] << 16)) +\n (this[offset + 3] * 0x1000000)\n}\n\nBuffer.prototype.readUint32BE =\nBuffer.prototype.readUInt32BE = function readUInt32BE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 4, this.length)\n\n return (this[offset] * 0x1000000) +\n ((this[offset + 1] << 16) |\n (this[offset + 2] << 8) |\n this[offset + 3])\n}\n\nBuffer.prototype.readBigUInt64LE = defineBigIntMethod(function readBigUInt64LE (offset) {\n offset = offset >>> 0\n validateNumber(offset, 'offset')\n const first = this[offset]\n const last = this[offset + 7]\n if (first === undefined || last === undefined) {\n boundsError(offset, this.length - 8)\n }\n\n const lo = first +\n this[++offset] * 2 ** 8 +\n this[++offset] * 2 ** 16 +\n this[++offset] * 2 ** 24\n\n const hi = this[++offset] +\n this[++offset] * 2 ** 8 +\n this[++offset] * 2 ** 16 +\n last * 2 ** 24\n\n return BigInt(lo) + (BigInt(hi) << BigInt(32))\n})\n\nBuffer.prototype.readBigUInt64BE = defineBigIntMethod(function readBigUInt64BE (offset) {\n offset = offset >>> 0\n validateNumber(offset, 'offset')\n const first = this[offset]\n const last = this[offset + 7]\n if (first === undefined || last === undefined) {\n boundsError(offset, this.length - 8)\n }\n\n const hi = first * 2 ** 24 +\n this[++offset] * 2 ** 16 +\n this[++offset] * 2 ** 8 +\n this[++offset]\n\n const lo = this[++offset] * 2 ** 24 +\n this[++offset] * 2 ** 16 +\n this[++offset] * 2 ** 8 +\n last\n\n return (BigInt(hi) << BigInt(32)) + BigInt(lo)\n})\n\nBuffer.prototype.readIntLE = function readIntLE (offset, byteLength, noAssert) {\n offset = offset >>> 0\n byteLength = byteLength >>> 0\n if (!noAssert) checkOffset(offset, byteLength, this.length)\n\n let val = this[offset]\n let mul = 1\n let i = 0\n while (++i < byteLength && (mul *= 0x100)) {\n val += this[offset + i] * mul\n }\n mul *= 0x80\n\n if (val >= mul) val -= Math.pow(2, 8 * byteLength)\n\n return val\n}\n\nBuffer.prototype.readIntBE = function readIntBE (offset, byteLength, noAssert) {\n offset = offset >>> 0\n byteLength = byteLength >>> 0\n if (!noAssert) checkOffset(offset, byteLength, this.length)\n\n let i = byteLength\n let mul = 1\n let val = this[offset + --i]\n while (i > 0 && (mul *= 0x100)) {\n val += this[offset + --i] * mul\n }\n mul *= 0x80\n\n if (val >= mul) val -= Math.pow(2, 8 * byteLength)\n\n return val\n}\n\nBuffer.prototype.readInt8 = function readInt8 (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 1, this.length)\n if (!(this[offset] & 0x80)) return (this[offset])\n return ((0xff - this[offset] + 1) * -1)\n}\n\nBuffer.prototype.readInt16LE = function readInt16LE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 2, this.length)\n const val = this[offset] | (this[offset + 1] << 8)\n return (val & 0x8000) ? val | 0xFFFF0000 : val\n}\n\nBuffer.prototype.readInt16BE = function readInt16BE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 2, this.length)\n const val = this[offset + 1] | (this[offset] << 8)\n return (val & 0x8000) ? val | 0xFFFF0000 : val\n}\n\nBuffer.prototype.readInt32LE = function readInt32LE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 4, this.length)\n\n return (this[offset]) |\n (this[offset + 1] << 8) |\n (this[offset + 2] << 16) |\n (this[offset + 3] << 24)\n}\n\nBuffer.prototype.readInt32BE = function readInt32BE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 4, this.length)\n\n return (this[offset] << 24) |\n (this[offset + 1] << 16) |\n (this[offset + 2] << 8) |\n (this[offset + 3])\n}\n\nBuffer.prototype.readBigInt64LE = defineBigIntMethod(function readBigInt64LE (offset) {\n offset = offset >>> 0\n validateNumber(offset, 'offset')\n const first = this[offset]\n const last = this[offset + 7]\n if (first === undefined || last === undefined) {\n boundsError(offset, this.length - 8)\n }\n\n const val = this[offset + 4] +\n this[offset + 5] * 2 ** 8 +\n this[offset + 6] * 2 ** 16 +\n (last << 24) // Overflow\n\n return (BigInt(val) << BigInt(32)) +\n BigInt(first +\n this[++offset] * 2 ** 8 +\n this[++offset] * 2 ** 16 +\n this[++offset] * 2 ** 24)\n})\n\nBuffer.prototype.readBigInt64BE = defineBigIntMethod(function readBigInt64BE (offset) {\n offset = offset >>> 0\n validateNumber(offset, 'offset')\n const first = this[offset]\n const last = this[offset + 7]\n if (first === undefined || last === undefined) {\n boundsError(offset, this.length - 8)\n }\n\n const val = (first << 24) + // Overflow\n this[++offset] * 2 ** 16 +\n this[++offset] * 2 ** 8 +\n this[++offset]\n\n return (BigInt(val) << BigInt(32)) +\n BigInt(this[++offset] * 2 ** 24 +\n this[++offset] * 2 ** 16 +\n this[++offset] * 2 ** 8 +\n last)\n})\n\nBuffer.prototype.readFloatLE = function readFloatLE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 4, this.length)\n return ieee754.read(this, offset, true, 23, 4)\n}\n\nBuffer.prototype.readFloatBE = function readFloatBE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 4, this.length)\n return ieee754.read(this, offset, false, 23, 4)\n}\n\nBuffer.prototype.readDoubleLE = function readDoubleLE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 8, this.length)\n return ieee754.read(this, offset, true, 52, 8)\n}\n\nBuffer.prototype.readDoubleBE = function readDoubleBE (offset, noAssert) {\n offset = offset >>> 0\n if (!noAssert) checkOffset(offset, 8, this.length)\n return ieee754.read(this, offset, false, 52, 8)\n}\n\nfunction checkInt (buf, value, offset, ext, max, min) {\n if (!Buffer.isBuffer(buf)) throw new TypeError('\"buffer\" argument must be a Buffer instance')\n if (value > max || value < min) throw new RangeError('\"value\" argument is out of bounds')\n if (offset + ext > buf.length) throw new RangeError('Index out of range')\n}\n\nBuffer.prototype.writeUintLE =\nBuffer.prototype.writeUIntLE = function writeUIntLE (value, offset, byteLength, noAssert) {\n value = +value\n offset = offset >>> 0\n byteLength = byteLength >>> 0\n if (!noAssert) {\n const maxBytes = Math.pow(2, 8 * byteLength) - 1\n checkInt(this, value, offset, byteLength, maxBytes, 0)\n }\n\n let mul = 1\n let i = 0\n this[offset] = value & 0xFF\n while (++i < byteLength && (mul *= 0x100)) {\n this[offset + i] = (value / mul) & 0xFF\n }\n\n return offset + byteLength\n}\n\nBuffer.prototype.writeUintBE =\nBuffer.prototype.writeUIntBE = function writeUIntBE (value, offset, byteLength, noAssert) {\n value = +value\n offset = offset >>> 0\n byteLength = byteLength >>> 0\n if (!noAssert) {\n const maxBytes = Math.pow(2, 8 * byteLength) - 1\n checkInt(this, value, offset, byteLength, maxBytes, 0)\n }\n\n let i = byteLength - 1\n let mul = 1\n this[offset + i] = value & 0xFF\n while (--i >= 0 && (mul *= 0x100)) {\n this[offset + i] = (value / mul) & 0xFF\n }\n\n return offset + byteLength\n}\n\nBuffer.prototype.writeUint8 =\nBuffer.prototype.writeUInt8 = function writeUInt8 (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 1, 0xff, 0)\n this[offset] = (value & 0xff)\n return offset + 1\n}\n\nBuffer.prototype.writeUint16LE =\nBuffer.prototype.writeUInt16LE = function writeUInt16LE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 2, 0xffff, 0)\n this[offset] = (value & 0xff)\n this[offset + 1] = (value >>> 8)\n return offset + 2\n}\n\nBuffer.prototype.writeUint16BE =\nBuffer.prototype.writeUInt16BE = function writeUInt16BE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 2, 0xffff, 0)\n this[offset] = (value >>> 8)\n this[offset + 1] = (value & 0xff)\n return offset + 2\n}\n\nBuffer.prototype.writeUint32LE =\nBuffer.prototype.writeUInt32LE = function writeUInt32LE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 4, 0xffffffff, 0)\n this[offset + 3] = (value >>> 24)\n this[offset + 2] = (value >>> 16)\n this[offset + 1] = (value >>> 8)\n this[offset] = (value & 0xff)\n return offset + 4\n}\n\nBuffer.prototype.writeUint32BE =\nBuffer.prototype.writeUInt32BE = function writeUInt32BE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 4, 0xffffffff, 0)\n this[offset] = (value >>> 24)\n this[offset + 1] = (value >>> 16)\n this[offset + 2] = (value >>> 8)\n this[offset + 3] = (value & 0xff)\n return offset + 4\n}\n\nfunction wrtBigUInt64LE (buf, value, offset, min, max) {\n checkIntBI(value, min, max, buf, offset, 7)\n\n let lo = Number(value & BigInt(0xffffffff))\n buf[offset++] = lo\n lo = lo >> 8\n buf[offset++] = lo\n lo = lo >> 8\n buf[offset++] = lo\n lo = lo >> 8\n buf[offset++] = lo\n let hi = Number(value >> BigInt(32) & BigInt(0xffffffff))\n buf[offset++] = hi\n hi = hi >> 8\n buf[offset++] = hi\n hi = hi >> 8\n buf[offset++] = hi\n hi = hi >> 8\n buf[offset++] = hi\n return offset\n}\n\nfunction wrtBigUInt64BE (buf, value, offset, min, max) {\n checkIntBI(value, min, max, buf, offset, 7)\n\n let lo = Number(value & BigInt(0xffffffff))\n buf[offset + 7] = lo\n lo = lo >> 8\n buf[offset + 6] = lo\n lo = lo >> 8\n buf[offset + 5] = lo\n lo = lo >> 8\n buf[offset + 4] = lo\n let hi = Number(value >> BigInt(32) & BigInt(0xffffffff))\n buf[offset + 3] = hi\n hi = hi >> 8\n buf[offset + 2] = hi\n hi = hi >> 8\n buf[offset + 1] = hi\n hi = hi >> 8\n buf[offset] = hi\n return offset + 8\n}\n\nBuffer.prototype.writeBigUInt64LE = defineBigIntMethod(function writeBigUInt64LE (value, offset = 0) {\n return wrtBigUInt64LE(this, value, offset, BigInt(0), BigInt('0xffffffffffffffff'))\n})\n\nBuffer.prototype.writeBigUInt64BE = defineBigIntMethod(function writeBigUInt64BE (value, offset = 0) {\n return wrtBigUInt64BE(this, value, offset, BigInt(0), BigInt('0xffffffffffffffff'))\n})\n\nBuffer.prototype.writeIntLE = function writeIntLE (value, offset, byteLength, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) {\n const limit = Math.pow(2, (8 * byteLength) - 1)\n\n checkInt(this, value, offset, byteLength, limit - 1, -limit)\n }\n\n let i = 0\n let mul = 1\n let sub = 0\n this[offset] = value & 0xFF\n while (++i < byteLength && (mul *= 0x100)) {\n if (value < 0 && sub === 0 && this[offset + i - 1] !== 0) {\n sub = 1\n }\n this[offset + i] = ((value / mul) >> 0) - sub & 0xFF\n }\n\n return offset + byteLength\n}\n\nBuffer.prototype.writeIntBE = function writeIntBE (value, offset, byteLength, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) {\n const limit = Math.pow(2, (8 * byteLength) - 1)\n\n checkInt(this, value, offset, byteLength, limit - 1, -limit)\n }\n\n let i = byteLength - 1\n let mul = 1\n let sub = 0\n this[offset + i] = value & 0xFF\n while (--i >= 0 && (mul *= 0x100)) {\n if (value < 0 && sub === 0 && this[offset + i + 1] !== 0) {\n sub = 1\n }\n this[offset + i] = ((value / mul) >> 0) - sub & 0xFF\n }\n\n return offset + byteLength\n}\n\nBuffer.prototype.writeInt8 = function writeInt8 (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 1, 0x7f, -0x80)\n if (value < 0) value = 0xff + value + 1\n this[offset] = (value & 0xff)\n return offset + 1\n}\n\nBuffer.prototype.writeInt16LE = function writeInt16LE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 2, 0x7fff, -0x8000)\n this[offset] = (value & 0xff)\n this[offset + 1] = (value >>> 8)\n return offset + 2\n}\n\nBuffer.prototype.writeInt16BE = function writeInt16BE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 2, 0x7fff, -0x8000)\n this[offset] = (value >>> 8)\n this[offset + 1] = (value & 0xff)\n return offset + 2\n}\n\nBuffer.prototype.writeInt32LE = function writeInt32LE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 4, 0x7fffffff, -0x80000000)\n this[offset] = (value & 0xff)\n this[offset + 1] = (value >>> 8)\n this[offset + 2] = (value >>> 16)\n this[offset + 3] = (value >>> 24)\n return offset + 4\n}\n\nBuffer.prototype.writeInt32BE = function writeInt32BE (value, offset, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) checkInt(this, value, offset, 4, 0x7fffffff, -0x80000000)\n if (value < 0) value = 0xffffffff + value + 1\n this[offset] = (value >>> 24)\n this[offset + 1] = (value >>> 16)\n this[offset + 2] = (value >>> 8)\n this[offset + 3] = (value & 0xff)\n return offset + 4\n}\n\nBuffer.prototype.writeBigInt64LE = defineBigIntMethod(function writeBigInt64LE (value, offset = 0) {\n return wrtBigUInt64LE(this, value, offset, -BigInt('0x8000000000000000'), BigInt('0x7fffffffffffffff'))\n})\n\nBuffer.prototype.writeBigInt64BE = defineBigIntMethod(function writeBigInt64BE (value, offset = 0) {\n return wrtBigUInt64BE(this, value, offset, -BigInt('0x8000000000000000'), BigInt('0x7fffffffffffffff'))\n})\n\nfunction checkIEEE754 (buf, value, offset, ext, max, min) {\n if (offset + ext > buf.length) throw new RangeError('Index out of range')\n if (offset < 0) throw new RangeError('Index out of range')\n}\n\nfunction writeFloat (buf, value, offset, littleEndian, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) {\n checkIEEE754(buf, value, offset, 4, 3.4028234663852886e+38, -3.4028234663852886e+38)\n }\n ieee754.write(buf, value, offset, littleEndian, 23, 4)\n return offset + 4\n}\n\nBuffer.prototype.writeFloatLE = function writeFloatLE (value, offset, noAssert) {\n return writeFloat(this, value, offset, true, noAssert)\n}\n\nBuffer.prototype.writeFloatBE = function writeFloatBE (value, offset, noAssert) {\n return writeFloat(this, value, offset, false, noAssert)\n}\n\nfunction writeDouble (buf, value, offset, littleEndian, noAssert) {\n value = +value\n offset = offset >>> 0\n if (!noAssert) {\n checkIEEE754(buf, value, offset, 8, 1.7976931348623157E+308, -1.7976931348623157E+308)\n }\n ieee754.write(buf, value, offset, littleEndian, 52, 8)\n return offset + 8\n}\n\nBuffer.prototype.writeDoubleLE = function writeDoubleLE (value, offset, noAssert) {\n return writeDouble(this, value, offset, true, noAssert)\n}\n\nBuffer.prototype.writeDoubleBE = function writeDoubleBE (value, offset, noAssert) {\n return writeDouble(this, value, offset, false, noAssert)\n}\n\n// copy(targetBuffer, targetStart=0, sourceStart=0, sourceEnd=buffer.length)\nBuffer.prototype.copy = function copy (target, targetStart, start, end) {\n if (!Buffer.isBuffer(target)) throw new TypeError('argument should be a Buffer')\n if (!start) start = 0\n if (!end && end !== 0) end = this.length\n if (targetStart >= target.length) targetStart = target.length\n if (!targetStart) targetStart = 0\n if (end > 0 && end < start) end = start\n\n // Copy 0 bytes; we're done\n if (end === start) return 0\n if (target.length === 0 || this.length === 0) return 0\n\n // Fatal error conditions\n if (targetStart < 0) {\n throw new RangeError('targetStart out of bounds')\n }\n if (start < 0 || start >= this.length) throw new RangeError('Index out of range')\n if (end < 0) throw new RangeError('sourceEnd out of bounds')\n\n // Are we oob?\n if (end > this.length) end = this.length\n if (target.length - targetStart < end - start) {\n end = target.length - targetStart + start\n }\n\n const len = end - start\n\n if (this === target && typeof Uint8Array.prototype.copyWithin === 'function') {\n // Use built-in when available, missing from IE11\n this.copyWithin(targetStart, start, end)\n } else {\n Uint8Array.prototype.set.call(\n target,\n this.subarray(start, end),\n targetStart\n )\n }\n\n return len\n}\n\n// Usage:\n// buffer.fill(number[, offset[, end]])\n// buffer.fill(buffer[, offset[, end]])\n// buffer.fill(string[, offset[, end]][, encoding])\nBuffer.prototype.fill = function fill (val, start, end, encoding) {\n // Handle string cases:\n if (typeof val === 'string') {\n if (typeof start === 'string') {\n encoding = start\n start = 0\n end = this.length\n } else if (typeof end === 'string') {\n encoding = end\n end = this.length\n }\n if (encoding !== undefined && typeof encoding !== 'string') {\n throw new TypeError('encoding must be a string')\n }\n if (typeof encoding === 'string' && !Buffer.isEncoding(encoding)) {\n throw new TypeError('Unknown encoding: ' + encoding)\n }\n if (val.length === 1) {\n const code = val.charCodeAt(0)\n if ((encoding === 'utf8' && code < 128) ||\n encoding === 'latin1') {\n // Fast path: If `val` fits into a single byte, use that numeric value.\n val = code\n }\n }\n } else if (typeof val === 'number') {\n val = val & 255\n } else if (typeof val === 'boolean') {\n val = Number(val)\n }\n\n // Invalid ranges are not set to a default, so can range check early.\n if (start < 0 || this.length < start || this.length < end) {\n throw new RangeError('Out of range index')\n }\n\n if (end <= start) {\n return this\n }\n\n start = start >>> 0\n end = end === undefined ? this.length : end >>> 0\n\n if (!val) val = 0\n\n let i\n if (typeof val === 'number') {\n for (i = start; i < end; ++i) {\n this[i] = val\n }\n } else {\n const bytes = Buffer.isBuffer(val)\n ? val\n : Buffer.from(val, encoding)\n const len = bytes.length\n if (len === 0) {\n throw new TypeError('The value \"' + val +\n '\" is invalid for argument \"value\"')\n }\n for (i = 0; i < end - start; ++i) {\n this[i + start] = bytes[i % len]\n }\n }\n\n return this\n}\n\n// CUSTOM ERRORS\n// =============\n\n// Simplified versions from Node, changed for Buffer-only usage\nconst errors = {}\nfunction E (sym, getMessage, Base) {\n errors[sym] = class NodeError extends Base {\n constructor () {\n super()\n\n Object.defineProperty(this, 'message', {\n value: getMessage.apply(this, arguments),\n writable: true,\n configurable: true\n })\n\n // Add the error code to the name to include it in the stack trace.\n this.name = `${this.name} [${sym}]`\n // Access the stack to generate the error message including the error code\n // from the name.\n this.stack // eslint-disable-line no-unused-expressions\n // Reset the name to the actual name.\n delete this.name\n }\n\n get code () {\n return sym\n }\n\n set code (value) {\n Object.defineProperty(this, 'code', {\n configurable: true,\n enumerable: true,\n value,\n writable: true\n })\n }\n\n toString () {\n return `${this.name} [${sym}]: ${this.message}`\n }\n }\n}\n\nE('ERR_BUFFER_OUT_OF_BOUNDS',\n function (name) {\n if (name) {\n return `${name} is outside of buffer bounds`\n }\n\n return 'Attempt to access memory outside buffer bounds'\n }, RangeError)\nE('ERR_INVALID_ARG_TYPE',\n function (name, actual) {\n return `The \"${name}\" argument must be of type number. Received type ${typeof actual}`\n }, TypeError)\nE('ERR_OUT_OF_RANGE',\n function (str, range, input) {\n let msg = `The value of \"${str}\" is out of range.`\n let received = input\n if (Number.isInteger(input) && Math.abs(input) > 2 ** 32) {\n received = addNumericalSeparator(String(input))\n } else if (typeof input === 'bigint') {\n received = String(input)\n if (input > BigInt(2) ** BigInt(32) || input < -(BigInt(2) ** BigInt(32))) {\n received = addNumericalSeparator(received)\n }\n received += 'n'\n }\n msg += ` It must be ${range}. Received ${received}`\n return msg\n }, RangeError)\n\nfunction addNumericalSeparator (val) {\n let res = ''\n let i = val.length\n const start = val[0] === '-' ? 1 : 0\n for (; i >= start + 4; i -= 3) {\n res = `_${val.slice(i - 3, i)}${res}`\n }\n return `${val.slice(0, i)}${res}`\n}\n\n// CHECK FUNCTIONS\n// ===============\n\nfunction checkBounds (buf, offset, byteLength) {\n validateNumber(offset, 'offset')\n if (buf[offset] === undefined || buf[offset + byteLength] === undefined) {\n boundsError(offset, buf.length - (byteLength + 1))\n }\n}\n\nfunction checkIntBI (value, min, max, buf, offset, byteLength) {\n if (value > max || value < min) {\n const n = typeof min === 'bigint' ? 'n' : ''\n let range\n if (byteLength > 3) {\n if (min === 0 || min === BigInt(0)) {\n range = `>= 0${n} and < 2${n} ** ${(byteLength + 1) * 8}${n}`\n } else {\n range = `>= -(2${n} ** ${(byteLength + 1) * 8 - 1}${n}) and < 2 ** ` +\n `${(byteLength + 1) * 8 - 1}${n}`\n }\n } else {\n range = `>= ${min}${n} and <= ${max}${n}`\n }\n throw new errors.ERR_OUT_OF_RANGE('value', range, value)\n }\n checkBounds(buf, offset, byteLength)\n}\n\nfunction validateNumber (value, name) {\n if (typeof value !== 'number') {\n throw new errors.ERR_INVALID_ARG_TYPE(name, 'number', value)\n }\n}\n\nfunction boundsError (value, length, type) {\n if (Math.floor(value) !== value) {\n validateNumber(value, type)\n throw new errors.ERR_OUT_OF_RANGE(type || 'offset', 'an integer', value)\n }\n\n if (length < 0) {\n throw new errors.ERR_BUFFER_OUT_OF_BOUNDS()\n }\n\n throw new errors.ERR_OUT_OF_RANGE(type || 'offset',\n `>= ${type ? 1 : 0} and <= ${length}`,\n value)\n}\n\n// HELPER FUNCTIONS\n// ================\n\nconst INVALID_BASE64_RE = /[^+/0-9A-Za-z-_]/g\n\nfunction base64clean (str) {\n // Node takes equal signs as end of the Base64 encoding\n str = str.split('=')[0]\n // Node strips out invalid characters like \\n and \\t from the string, base64-js does not\n str = str.trim().replace(INVALID_BASE64_RE, '')\n // Node converts strings with length < 2 to ''\n if (str.length < 2) return ''\n // Node allows for non-padded base64 strings (missing trailing ===), base64-js does not\n while (str.length % 4 !== 0) {\n str = str + '='\n }\n return str\n}\n\nfunction utf8ToBytes (string, units) {\n units = units || Infinity\n let codePoint\n const length = string.length\n let leadSurrogate = null\n const bytes = []\n\n for (let i = 0; i < length; ++i) {\n codePoint = string.charCodeAt(i)\n\n // is surrogate component\n if (codePoint > 0xD7FF && codePoint < 0xE000) {\n // last char was a lead\n if (!leadSurrogate) {\n // no lead yet\n if (codePoint > 0xDBFF) {\n // unexpected trail\n if ((units -= 3) > -1) bytes.push(0xEF, 0xBF, 0xBD)\n continue\n } else if (i + 1 === length) {\n // unpaired lead\n if ((units -= 3) > -1) bytes.push(0xEF, 0xBF, 0xBD)\n continue\n }\n\n // valid lead\n leadSurrogate = codePoint\n\n continue\n }\n\n // 2 leads in a row\n if (codePoint < 0xDC00) {\n if ((units -= 3) > -1) bytes.push(0xEF, 0xBF, 0xBD)\n leadSurrogate = codePoint\n continue\n }\n\n // valid surrogate pair\n codePoint = (leadSurrogate - 0xD800 << 10 | codePoint - 0xDC00) + 0x10000\n } else if (leadSurrogate) {\n // valid bmp char, but last char was a lead\n if ((units -= 3) > -1) bytes.push(0xEF, 0xBF, 0xBD)\n }\n\n leadSurrogate = null\n\n // encode utf8\n if (codePoint < 0x80) {\n if ((units -= 1) < 0) break\n bytes.push(codePoint)\n } else if (codePoint < 0x800) {\n if ((units -= 2) < 0) break\n bytes.push(\n codePoint >> 0x6 | 0xC0,\n codePoint & 0x3F | 0x80\n )\n } else if (codePoint < 0x10000) {\n if ((units -= 3) < 0) break\n bytes.push(\n codePoint >> 0xC | 0xE0,\n codePoint >> 0x6 & 0x3F | 0x80,\n codePoint & 0x3F | 0x80\n )\n } else if (codePoint < 0x110000) {\n if ((units -= 4) < 0) break\n bytes.push(\n codePoint >> 0x12 | 0xF0,\n codePoint >> 0xC & 0x3F | 0x80,\n codePoint >> 0x6 & 0x3F | 0x80,\n codePoint & 0x3F | 0x80\n )\n } else {\n throw new Error('Invalid code point')\n }\n }\n\n return bytes\n}\n\nfunction asciiToBytes (str) {\n const byteArray = []\n for (let i = 0; i < str.length; ++i) {\n // Node's code seems to be doing this and not & 0x7F..\n byteArray.push(str.charCodeAt(i) & 0xFF)\n }\n return byteArray\n}\n\nfunction utf16leToBytes (str, units) {\n let c, hi, lo\n const byteArray = []\n for (let i = 0; i < str.length; ++i) {\n if ((units -= 2) < 0) break\n\n c = str.charCodeAt(i)\n hi = c >> 8\n lo = c % 256\n byteArray.push(lo)\n byteArray.push(hi)\n }\n\n return byteArray\n}\n\nfunction base64ToBytes (str) {\n return base64.toByteArray(base64clean(str))\n}\n\nfunction blitBuffer (src, dst, offset, length) {\n let i\n for (i = 0; i < length; ++i) {\n if ((i + offset >= dst.length) || (i >= src.length)) break\n dst[i + offset] = src[i]\n }\n return i\n}\n\n// ArrayBuffer or Uint8Array objects from other contexts (i.e. iframes) do not pass\n// the `instanceof` check but they should be treated as of that type.\n// See: https://github.com/feross/buffer/issues/166\nfunction isInstance (obj, type) {\n return obj instanceof type ||\n (obj != null && obj.constructor != null && obj.constructor.name != null &&\n obj.constructor.name === type.name)\n}\nfunction numberIsNaN (obj) {\n // For IE11 support\n return obj !== obj // eslint-disable-line no-self-compare\n}\n\n// Create lookup table for `toString('hex')`\n// See: https://github.com/feross/buffer/issues/219\nconst hexSliceLookupTable = (function () {\n const alphabet = '0123456789abcdef'\n const table = new Array(256)\n for (let i = 0; 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client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport usePreviousProps from '@mui/utils/usePreviousProps';\nimport composeClasses from '@mui/utils/composeClasses';\nimport useSlotProps from '@mui/utils/useSlotProps';\nimport useBadge from \"./useBadge.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport badgeClasses, { getBadgeUtilityClass } from \"./badgeClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst RADIUS_STANDARD = 10;\nconst RADIUS_DOT = 4;\nconst useUtilityClasses = ownerState => {\n const {\n color,\n anchorOrigin,\n invisible,\n overlap,\n variant,\n classes = {}\n } = ownerState;\n const slots = {\n root: ['root'],\n badge: ['badge', variant, invisible && 'invisible', `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}`, `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}${capitalize(overlap)}`, `overlap${capitalize(overlap)}`, color !== 'default' && `color${capitalize(color)}`]\n };\n return composeClasses(slots, getBadgeUtilityClass, classes);\n};\nconst BadgeRoot = styled('span', {\n name: 'MuiBadge',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n position: 'relative',\n display: 'inline-flex',\n // For correct alignment with the text.\n verticalAlign: 'middle',\n flexShrink: 0\n});\nconst BadgeBadge = styled('span', {\n name: 'MuiBadge',\n slot: 'Badge',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.badge, styles[ownerState.variant], 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{\n bottom: 0,\n right: 0,\n transform: 'scale(1) translate(50%, 50%)',\n transformOrigin: '100% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n top: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, -50%)',\n transformOrigin: '0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n bottom: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => 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'0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'circular',\n style: {\n bottom: '14%',\n left: '14%',\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: {\n invisible: true\n },\n style: {\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeInOut,\n duration: theme.transitions.duration.leavingScreen\n })\n }\n }]\n})));\nconst Badge = /*#__PURE__*/React.forwardRef(function Badge(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiBadge'\n });\n const {\n anchorOrigin: anchorOriginProp = {\n vertical: 'top',\n horizontal: 'right'\n },\n className,\n classes: classesProp,\n component,\n components = {},\n componentsProps = {},\n children,\n overlap: overlapProp = 'rectangular',\n color: colorProp = 'default',\n invisible: invisibleProp = false,\n max: maxProp = 99,\n badgeContent: badgeContentProp,\n slots,\n slotProps,\n showZero = false,\n variant: variantProp = 'standard',\n ...other\n } = props;\n const {\n badgeContent,\n invisible: invisibleFromHook,\n max,\n displayValue: displayValueFromHook\n } = useBadge({\n max: maxProp,\n invisible: invisibleProp,\n badgeContent: badgeContentProp,\n showZero\n });\n const prevProps = usePreviousProps({\n anchorOrigin: anchorOriginProp,\n color: colorProp,\n overlap: overlapProp,\n variant: variantProp,\n badgeContent: badgeContentProp\n });\n const invisible = invisibleFromHook || badgeContent == null && variantProp !== 'dot';\n const {\n color = colorProp,\n overlap = overlapProp,\n anchorOrigin = anchorOriginProp,\n variant = variantProp\n } = invisible ? prevProps : props;\n const displayValue = variant !== 'dot' ? displayValueFromHook : undefined;\n const ownerState = {\n ...props,\n badgeContent,\n invisible,\n max,\n displayValue,\n showZero,\n anchorOrigin,\n color,\n overlap,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n\n // support both `slots` and `components` for backward compatibility\n const RootSlot = slots?.root ?? components.Root ?? BadgeRoot;\n const BadgeSlot = slots?.badge ?? components.Badge ?? BadgeBadge;\n const rootSlotProps = slotProps?.root ?? componentsProps.root;\n const badgeSlotProps = slotProps?.badge ?? componentsProps.badge;\n const rootProps = useSlotProps({\n elementType: RootSlot,\n externalSlotProps: rootSlotProps,\n externalForwardedProps: other,\n additionalProps: {\n ref,\n as: component\n },\n ownerState,\n className: clsx(rootSlotProps?.className, classes.root, className)\n });\n const badgeProps = useSlotProps({\n elementType: BadgeSlot,\n externalSlotProps: badgeSlotProps,\n ownerState,\n className: clsx(classes.badge, badgeSlotProps?.className)\n });\n return /*#__PURE__*/_jsxs(RootSlot, {\n ...rootProps,\n children: [children, /*#__PURE__*/_jsx(BadgeSlot, {\n ...badgeProps,\n children: displayValue\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Badge.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The anchor of the badge.\n * @default {\n * vertical: 'top',\n * horizontal: 'right',\n * }\n */\n anchorOrigin: PropTypes.shape({\n horizontal: PropTypes.oneOf(['left', 'right']).isRequired,\n vertical: PropTypes.oneOf(['bottom', 'top']).isRequired\n }),\n /**\n * The content rendered within the badge.\n */\n badgeContent: PropTypes.node,\n /**\n * The badge will be added relative to this node.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'default'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The components used for each slot inside.\n *\n * @deprecated use the `slots` prop instead. 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PropTypes.object])\n }),\n /**\n * The components used for each slot inside the Badge.\n * Either a string to use a HTML element or a component.\n * @default {}\n */\n slots: PropTypes.shape({\n badge: PropTypes.elementType,\n root: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'standard'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dot', 'standard']), PropTypes.string])\n} : void 0;\nexport default Badge;","'use client';\n\nimport { usePreviousProps } from '@mui/utils';\n/**\n *\n * Demos:\n *\n * - [Badge](https://mui.com/base-ui/react-badge/#hook)\n *\n * API:\n *\n * - [useBadge API](https://mui.com/base-ui/react-badge/hooks-api/#use-badge)\n */\nfunction useBadge(parameters) {\n const {\n badgeContent: badgeContentProp,\n invisible: invisibleProp = false,\n max: maxProp = 99,\n showZero = false\n } = parameters;\n const prevProps = usePreviousProps({\n badgeContent: badgeContentProp,\n max: maxProp\n });\n let invisible = invisibleProp;\n if (invisibleProp === false && badgeContentProp === 0 && !showZero) {\n invisible = true;\n }\n const {\n badgeContent,\n max = maxProp\n } = invisible ? prevProps : parameters;\n const displayValue = badgeContent && Number(badgeContent) > max ? `${max}+` : badgeContent;\n return {\n badgeContent,\n invisible,\n max,\n displayValue\n };\n}\nexport default useBadge;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getBadgeUtilityClass(slot) {\n return generateUtilityClass('MuiBadge', slot);\n}\nconst badgeClasses = generateUtilityClasses('MuiBadge', ['root', 'badge', 'dot', 'standard', 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React, { useState } from 'react'\nimport { Grid, IconButton, InputAdornment, TextField } from '@mui/material'\nimport { Menu } from '@jbrowse/core/ui'\n\n// icons\nimport ClearIcon from '@mui/icons-material/Clear'\nimport MoreVert from '@mui/icons-material/MoreVert'\n\n// locals\nimport ShoppingCart from '../ShoppingCart'\nimport { HierarchicalTrackSelectorModel } from '../../model'\n\nexport default function FacetedHeader({\n model,\n}: {\n model: HierarchicalTrackSelectorModel\n}) {\n const { faceted } = model\n const [anchorEl, setAnchorEl] = useState(null)\n const { showOptions, showFilters, showSparse, useShoppingCart } = faceted\n\n return (\n <>\n \n \n {\n faceted.setFilterText(event.target.value)\n }}\n InputProps={{\n endAdornment: (\n \n {\n faceted.setFilterText('')\n }}\n >\n \n \n \n ),\n }}\n />\n \n\n \n {\n setAnchorEl(event.currentTarget)\n }}\n >\n \n \n \n \n \n \n \n {\n setAnchorEl(null)\n }}\n onMenuItemClick={(_event, callback) => {\n callback()\n setAnchorEl(null)\n }}\n menuItems={[\n {\n label: 'Add tracks to selection instead of turning them on/off',\n onClick: () => {\n faceted.setUseShoppingCart(!useShoppingCart)\n },\n type: 'checkbox',\n checked: useShoppingCart,\n },\n {\n label: 'Show sparse metadata columns',\n onClick: () => {\n faceted.setShowSparse(!showSparse)\n },\n checked: showSparse,\n type: 'checkbox',\n },\n {\n label: 'Show facet filters',\n onClick: () => {\n faceted.setShowFilters(!showFilters)\n },\n checked: showFilters,\n type: 'checkbox',\n },\n {\n label: 'Show extra table options',\n onClick: () => {\n faceted.setShowOptions(!showOptions)\n },\n checked: showOptions,\n type: 'checkbox',\n },\n ]}\n />\n \n )\n}\n","import React, { useState } from 'react'\nimport {\n Typography,\n FormControl,\n Select,\n IconButton,\n Tooltip,\n} from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n\n// icon\nimport ClearIcon from '@mui/icons-material/Clear'\nimport MinimizeIcon from '@mui/icons-material/Minimize'\nimport AddIcon from '@mui/icons-material/Add'\nimport { coarseStripHTML } from '@jbrowse/core/util'\nimport { observer } from 'mobx-react'\nimport { HierarchicalTrackSelectorModel } from '../../model'\n\nconst useStyles = makeStyles()(theme => ({\n facet: {\n margin: 0,\n marginLeft: theme.spacing(2),\n },\n select: {\n marginBottom: theme.spacing(2),\n },\n}))\n\nfunction ClearButton({ onClick }: { onClick: () => void }) {\n return (\n \n {\n onClick()\n }}\n size=\"small\"\n >\n \n \n \n )\n}\n\nfunction ExpandButton({\n visible,\n onClick,\n}: {\n visible: boolean\n onClick: () => void\n}) {\n return (\n \n {\n onClick()\n }}\n size=\"small\"\n >\n {visible ? : }\n \n \n )\n}\n\nconst FacetFilter = observer(function ({\n column,\n vals,\n model,\n}: {\n column: { field: string }\n vals: [string, number][]\n model: HierarchicalTrackSelectorModel\n}) {\n const { classes } = useStyles()\n const [visible, setVisible] = useState(true)\n const { faceted } = model\n const { filters } = faceted\n const { field } = column\n return (\n \n

\n {field}\n {\n faceted.setFilter(field, [])\n }}\n />\n {\n setVisible(!visible)\n }}\n />\n

\n {visible ? (\n {\n faceted.setFilter(\n column.field,\n // @ts-expect-error\n [...event.target.options]\n .filter(opt => opt.selected)\n .map(opt => opt.value),\n )\n }}\n >\n {vals\n .sort((a, b) => a[0].localeCompare(b[0]))\n .map(([name, count]) => (\n \n ))}\n \n ) : null}\n \n )\n})\n\nexport default FacetFilter\n","import React from 'react'\nimport { observer } from 'mobx-react'\n\n// locals\nimport FacetFilter from './FacetFilter'\nimport { HierarchicalTrackSelectorModel } from '../../model'\nimport { Row, getRowStr } from './util'\n\nconst FacetFilters = observer(function ({\n rows,\n columns,\n model,\n}: {\n rows: Row[]\n columns: { field: string }[]\n model: HierarchicalTrackSelectorModel\n}) {\n const { faceted } = model\n const { filters } = faceted\n const facets = columns.slice(1)\n const uniqs = new Map(\n facets.map(f => [f.field, new Map()] as const),\n )\n\n // this code \"stages the facet filters\" in order that the user has selected\n // them, which relies on the js behavior that the order of the returned keys is\n // related to the insertion order.\n const filterKeys = faceted.filters.keys()\n const facetKeys = facets.map(f => f.field)\n const ret = new Set()\n for (const entry of filterKeys) {\n // give non-empty filters priority\n if (filters.get(entry)?.length) {\n ret.add(entry)\n }\n }\n for (const entry of facetKeys) {\n ret.add(entry)\n }\n\n let currentRows = rows\n for (const facet of ret) {\n const elt = uniqs.get(facet)!\n for (const row of currentRows) {\n const key = getRowStr(facet, row)\n const val = elt.get(key)\n // we don't allow filtering on empty yet\n if (key) {\n if (val === undefined) {\n elt.set(key, 1)\n } else {\n elt.set(key, val + 1)\n }\n }\n }\n const filter = filters.get(facet)?.length\n ? new Set(filters.get(facet))\n : undefined\n\n currentRows = currentRows.filter(row =>\n filter !== undefined ? filter.has(getRowStr(facet, row)) : true,\n )\n }\n\n return (\n

\n {facets.map(c => (\n \n ))}\n

\n )\n})\nexport default FacetFilters\n","import React, { useState } from 'react'\nimport { transaction } from 'mobx'\nimport { observer } from 'mobx-react'\nimport { getRoot, resolveIdentifier } from 'mobx-state-tree'\nimport { DataGrid, GridColDef, GridToolbar } from '@mui/x-data-grid'\n\n// jbrowse\nimport { ResizeHandle } from '@jbrowse/core/ui'\nimport SanitizedHTML from '@jbrowse/core/ui/SanitizedHTML'\nimport { getEnv, measureGridWidth } from '@jbrowse/core/util'\nimport { AnyConfigurationModel } from '@jbrowse/core/configuration'\nimport { makeStyles } from 'tss-react/mui'\n\n// locals\nimport { HierarchicalTrackSelectorModel } from '../../model'\nimport FacetedHeader from './FacetedHeader'\nimport FacetFilters from './FacetFilters'\nimport TrackLabelMenu from '../tree/TrackLabelMenu'\n\nexport interface InfoArgs {\n target: HTMLElement\n id: string\n conf: AnyConfigurationModel\n}\n\nconst useStyles = makeStyles()({\n cell: {\n whiteSpace: 'nowrap',\n overflow: 'hidden',\n textOverflow: 'ellipsis',\n },\n resizeHandle: {\n marginLeft: 5,\n background: 'grey',\n width: 5,\n },\n})\n\nconst frac = 0.75\n\nconst FacetedSelector = observer(function FacetedSelector({\n model,\n}: {\n model: HierarchicalTrackSelectorModel\n}) {\n const { classes } = useStyles()\n const { view, selection, shownTrackIds, faceted } = model\n const {\n rows,\n panelWidth,\n showFilters,\n useShoppingCart,\n showOptions,\n filteredRows,\n filteredNonMetadataKeys,\n filteredMetadataKeys,\n visible,\n } = faceted\n const { pluginManager } = getEnv(model)\n\n type T = GridColDef<(typeof filteredRows)[0]>\n\n const [widths, setWidths] = useState>({\n name:\n measureGridWidth(\n rows.map(r => r.name),\n { maxWidth: 500, stripHTML: true },\n ) + 15,\n ...Object.fromEntries(\n filteredNonMetadataKeys\n .filter(f => visible[f])\n .map(e => [\n e,\n measureGridWidth(\n rows.map(r => r[e as keyof typeof r] as string),\n { maxWidth: 400, stripHTML: true },\n ),\n ]),\n ),\n ...Object.fromEntries(\n filteredMetadataKeys\n .filter(f => visible[`metadata.${f}`])\n .map(e => {\n return [\n `metadata.${e}`,\n measureGridWidth(\n rows.map(r => r.metadata[e]),\n { maxWidth: 400, stripHTML: true },\n ),\n ]\n }),\n ),\n })\n const columns: T[] = [\n {\n field: 'name',\n hideable: false,\n renderCell: params => {\n const { value, row } = params\n const { id, conf } = row\n return (\n

\n \n \n

\n )\n },\n width: widths.name ?? 100,\n },\n ...filteredNonMetadataKeys.map(e => {\n return {\n field: e,\n width: widths[e] ?? 100,\n renderCell: params => {\n const val = params.value\n return val ? (\n \n ) : (\n ''\n )\n },\n } satisfies T\n }),\n ...filteredMetadataKeys.map(e => {\n return {\n field: `metadata.${e}`,\n headerName: ['name', ...filteredNonMetadataKeys].includes(e)\n ? `${e} (from metadata)`\n : e,\n width: widths[`metadata.${e}`] ?? 100,\n valueGetter: (_, row) => `${row.metadata[e] ?? ''}`,\n renderCell: params => {\n const val = params.value\n return val ? (\n \n ) : (\n ''\n )\n },\n } satisfies T\n }),\n ]\n\n return (\n <>\n \n \n \n {\n setWidths({ ...widths, [arg.colDef.field]: arg.width })\n }}\n columnVisibilityModel={visible}\n onColumnVisibilityModelChange={n => {\n faceted.setVisible(n)\n }}\n columnHeaderHeight={35}\n checkboxSelection\n disableRowSelectionOnClick\n keepNonExistentRowsSelected\n onRowSelectionModelChange={userSelectedIds => {\n if (!useShoppingCart) {\n const a1 = shownTrackIds\n const a2 = new Set(userSelectedIds as string[])\n // synchronize the user selection with the view\n // see share https://stackoverflow.com/a/33034768/2129219\n transaction(() => {\n ;[...a1].filter(x => !a2.has(x)).map(t => view.hideTrack(t))\n ;[...a2]\n .filter(x => !a1.has(x))\n .map(t => {\n view.showTrack(t)\n model.addToRecentlyUsed(t)\n })\n })\n } else {\n const root = getRoot(model)\n const schema = pluginManager.pluggableConfigSchemaType('track')\n model.setSelection(\n userSelectedIds.map(id =>\n resolveIdentifier(schema, root, id),\n ),\n )\n }\n }}\n rowSelectionModel={\n useShoppingCart\n ? selection.map(s => s.trackId)\n : [...shownTrackIds]\n }\n slots={{ toolbar: showOptions ? GridToolbar : null }}\n slotProps={{\n toolbar: {\n printOptions: {\n disableToolbarButton: true,\n },\n },\n }}\n columns={columns}\n rowHeight={25}\n />\n

\n\n {showFilters ? (\n <>\n faceted.setPanelWidth(panelWidth - dist)}\n className={classes.resizeHandle}\n />\n

\n \n

\n \n ) : null}\n

\n \n )\n})\n\nexport default FacetedSelector\n","import React from 'react'\nimport { DialogContent } from '@mui/material'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { observer } from 'mobx-react'\n\n// locals\nimport { HierarchicalTrackSelectorModel } from '../../model'\nimport FacetedSelector from './FacetedSelector'\n\nconst FacetedTrackSelectorDialog = observer(function (props: {\n handleClose: () => void\n model: HierarchicalTrackSelectorModel\n}) {\n const { handleClose } = props\n return (\n \n \n \n \n \n )\n})\n\nexport default FacetedTrackSelectorDialog\n","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { keyframes, css, styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { getCircularProgressUtilityClass } from \"./circularProgressClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst SIZE = 44;\nconst circularRotateKeyframe = keyframes`\n 0% {\n transform: rotate(0deg);\n }\n\n 100% {\n transform: rotate(360deg);\n }\n`;\nconst circularDashKeyframe = keyframes`\n 0% {\n stroke-dasharray: 1px, 200px;\n stroke-dashoffset: 0;\n }\n\n 50% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -15px;\n }\n\n 100% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -125px;\n }\n`;\n\n// This implementation is for supporting both Styled-components v4+ and Pigment CSS.\n// A global animation has to be created here for Styled-components v4+ (https://github.com/styled-components/styled-components/blob/main/packages/styled-components/src/utils/errors.md#12).\n// which can be done by checking typeof indeterminate1Keyframe !== 'string' (at runtime, Pigment CSS transform keyframes`` to a string).\nconst rotateAnimation = typeof circularRotateKeyframe !== 'string' ? css`\n animation: ${circularRotateKeyframe} 1.4s linear infinite;\n ` : null;\nconst dashAnimation = typeof circularDashKeyframe !== 'string' ? css`\n animation: ${circularDashKeyframe} 1.4s ease-in-out infinite;\n ` : null;\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant,\n color,\n disableShrink\n } = ownerState;\n const slots = {\n root: ['root', variant, `color${capitalize(color)}`],\n svg: ['svg'],\n circle: ['circle', `circle${capitalize(variant)}`, disableShrink && 'circleDisableShrink']\n };\n return composeClasses(slots, getCircularProgressUtilityClass, classes);\n};\nconst CircularProgressRoot = styled('span', {\n name: 'MuiCircularProgress',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'inline-block',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('transform')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: rotateAnimation || {\n animation: `${circularRotateKeyframe} 1.4s linear infinite`\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color\n },\n style: {\n color: (theme.vars || theme).palette[color].main\n }\n }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n name: 'MuiCircularProgress',\n slot: 'Svg',\n overridesResolver: (props, styles) => styles.svg\n})({\n display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n name: 'MuiCircularProgress',\n slot: 'Circle',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n }\n})(memoTheme(({\n theme\n}) => ({\n stroke: 'currentColor',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('stroke-dashoffset')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: {\n // Some default value that looks fine waiting for the animation to kicks in.\n strokeDasharray: '80px, 200px',\n strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n style: dashAnimation || {\n // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n }\n }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCircularProgress'\n });\n const {\n className,\n color = 'primary',\n disableShrink = false,\n size = 40,\n style,\n thickness = 3.6,\n value = 0,\n variant = 'indeterminate',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n disableShrink,\n size,\n thickness,\n value,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n const circleStyle = {};\n const rootStyle = {};\n const rootProps = {};\n if (variant === 'determinate') {\n const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n circleStyle.strokeDasharray = circumference.toFixed(3);\n rootProps['aria-valuenow'] = Math.round(value);\n circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n rootStyle.transform = 'rotate(-90deg)';\n }\n return /*#__PURE__*/_jsx(CircularProgressRoot, {\n className: clsx(classes.root, className),\n style: {\n width: size,\n height: size,\n ...rootStyle,\n ...style\n },\n ownerState: ownerState,\n ref: ref,\n role: \"progressbar\",\n ...rootProps,\n ...other,\n children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n className: classes.svg,\n ownerState: ownerState,\n viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n className: classes.circle,\n style: circleStyle,\n ownerState: ownerState,\n cx: SIZE,\n cy: SIZE,\n r: (SIZE - thickness) / 2,\n fill: \"none\",\n strokeWidth: thickness\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the shrink animation is disabled.\n * This only works if variant is `indeterminate`.\n * @default false\n */\n disableShrink: chainPropTypes(PropTypes.bool, props => {\n if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n }\n return null;\n }),\n /**\n * The size of the component.\n * If using a number, the pixel unit is assumed.\n * If using a string, you need to provide the CSS unit, for example '3rem'.\n * @default 40\n */\n size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The thickness of the circle.\n * @default 3.6\n */\n thickness: PropTypes.number,\n /**\n * The value of the progress indicator for the determinate variant.\n * Value between 0 and 100.\n * @default 0\n */\n value: PropTypes.number,\n /**\n * The variant to use.\n * Use indeterminate when there is no progress value.\n * @default 'indeterminate'\n */\n variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { elementAcceptingRef, exactProp, unstable_ownerDocument as ownerDocument, unstable_useForkRef as useForkRef, unstable_useEventCallback as useEventCallback } from '@mui/utils';\nimport getReactNodeRef from '@mui/utils/getReactNodeRef';\n\n// TODO: return `EventHandlerName extends `on${infer EventName}` ? Lowercase : never` once generatePropTypes runs with TS 4.1\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nfunction mapEventPropToEvent(eventProp) {\n return eventProp.substring(2).toLowerCase();\n}\nfunction clickedRootScrollbar(event, doc) {\n return doc.documentElement.clientWidth < event.clientX || doc.documentElement.clientHeight < event.clientY;\n}\n/**\n * Listen for click events that occur somewhere in the document, outside of the element itself.\n * For instance, if you need to hide a menu when people click anywhere else on your page.\n *\n * Demos:\n *\n * - [Click-Away Listener](https://mui.com/material-ui/react-click-away-listener/)\n * - [Menu](https://mui.com/material-ui/react-menu/)\n *\n * API:\n *\n * - [ClickAwayListener API](https://mui.com/material-ui/api/click-away-listener/)\n */\nfunction ClickAwayListener(props) {\n const {\n children,\n disableReactTree = false,\n mouseEvent = 'onClick',\n onClickAway,\n touchEvent = 'onTouchEnd'\n } = props;\n const movedRef = React.useRef(false);\n const nodeRef = React.useRef(null);\n const activatedRef = React.useRef(false);\n const syntheticEventRef = React.useRef(false);\n React.useEffect(() => {\n // Ensure that this component is not \"activated\" synchronously.\n // https://github.com/facebook/react/issues/20074\n setTimeout(() => {\n activatedRef.current = true;\n }, 0);\n return () => {\n activatedRef.current = false;\n };\n }, []);\n const handleRef = useForkRef(getReactNodeRef(children), nodeRef);\n\n // The handler doesn't take event.defaultPrevented into account:\n //\n // event.preventDefault() is meant to stop default behaviors like\n // clicking a checkbox to check it, hitting a button to submit a form,\n // and hitting left arrow to move the cursor in a text input etc.\n // Only special HTML elements have these default behaviors.\n const handleClickAway = useEventCallback(event => {\n // Given developers can stop the propagation of the synthetic event,\n // we can only be confident with a positive value.\n const insideReactTree = syntheticEventRef.current;\n syntheticEventRef.current = false;\n const doc = ownerDocument(nodeRef.current);\n\n // 1. IE11 support, which trigger the handleClickAway even after the unbind\n // 2. The child might render null.\n // 3. Behave like a blur listener.\n if (!activatedRef.current || !nodeRef.current || 'clientX' in event && clickedRootScrollbar(event, doc)) {\n return;\n }\n\n // Do not act if user performed touchmove\n if (movedRef.current) {\n movedRef.current = false;\n return;\n }\n let insideDOM;\n\n // If not enough, can use https://github.com/DieterHolvoet/event-propagation-path/blob/master/propagationPath.js\n if (event.composedPath) {\n insideDOM = event.composedPath().includes(nodeRef.current);\n } else {\n insideDOM = !doc.documentElement.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target) || nodeRef.current.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target);\n }\n if (!insideDOM && (disableReactTree || !insideReactTree)) {\n onClickAway(event);\n }\n });\n\n // Keep track of mouse/touch events that bubbled up through the portal.\n const createHandleSynthetic = handlerName => event => {\n syntheticEventRef.current = true;\n const childrenPropsHandler = children.props[handlerName];\n if (childrenPropsHandler) {\n childrenPropsHandler(event);\n }\n };\n const childrenProps = {\n ref: handleRef\n };\n if (touchEvent !== false) {\n childrenProps[touchEvent] = createHandleSynthetic(touchEvent);\n }\n React.useEffect(() => {\n if (touchEvent !== false) {\n const mappedTouchEvent = mapEventPropToEvent(touchEvent);\n const doc = ownerDocument(nodeRef.current);\n const handleTouchMove = () => {\n movedRef.current = true;\n };\n doc.addEventListener(mappedTouchEvent, handleClickAway);\n doc.addEventListener('touchmove', handleTouchMove);\n return () => {\n doc.removeEventListener(mappedTouchEvent, handleClickAway);\n doc.removeEventListener('touchmove', handleTouchMove);\n };\n }\n return undefined;\n }, [handleClickAway, touchEvent]);\n if (mouseEvent !== false) {\n childrenProps[mouseEvent] = createHandleSynthetic(mouseEvent);\n }\n React.useEffect(() => {\n if (mouseEvent !== false) {\n const mappedMouseEvent = mapEventPropToEvent(mouseEvent);\n const doc = ownerDocument(nodeRef.current);\n doc.addEventListener(mappedMouseEvent, handleClickAway);\n return () => {\n doc.removeEventListener(mappedMouseEvent, handleClickAway);\n };\n }\n return undefined;\n }, [handleClickAway, mouseEvent]);\n return /*#__PURE__*/_jsx(React.Fragment, {\n children: /*#__PURE__*/React.cloneElement(children, childrenProps)\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? ClickAwayListener.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the TypeScript types and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The wrapped element.\n */\n children: elementAcceptingRef.isRequired,\n /**\n * If `true`, the React tree is ignored and only the DOM tree is considered.\n * This prop changes how portaled elements are handled.\n * @default false\n */\n disableReactTree: PropTypes.bool,\n /**\n * The mouse event to listen to. You can disable the listener by providing `false`.\n * @default 'onClick'\n */\n mouseEvent: PropTypes.oneOf(['onClick', 'onMouseDown', 'onMouseUp', 'onPointerDown', 'onPointerUp', false]),\n /**\n * Callback fired when a \"click away\" event is detected.\n */\n onClickAway: PropTypes.func.isRequired,\n /**\n * The touch event to listen to. You can disable the listener by providing `false`.\n * @default 'onTouchEnd'\n */\n touchEvent: PropTypes.oneOf(['onTouchEnd', 'onTouchStart', false])\n} : void 0;\nif (process.env.NODE_ENV !== 'production') {\n // eslint-disable-next-line\n ClickAwayListener['propTypes' + ''] = exactProp(ClickAwayListener.propTypes);\n}\nexport { ClickAwayListener };","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getToolbarUtilityClass } from \"./toolbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n disableGutters,\n variant\n } = ownerState;\n const slots = {\n root: ['root', !disableGutters && 'gutters', variant]\n };\n return composeClasses(slots, getToolbarUtilityClass, classes);\n};\nconst ToolbarRoot = styled('div', {\n name: 'MuiToolbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, !ownerState.disableGutters && styles.gutters, styles[ownerState.variant]];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disableGutters,\n style: {\n paddingLeft: theme.spacing(2),\n paddingRight: theme.spacing(2),\n [theme.breakpoints.up('sm')]: {\n paddingLeft: theme.spacing(3),\n paddingRight: theme.spacing(3)\n }\n }\n }, {\n props: {\n variant: 'dense'\n },\n style: {\n minHeight: 48\n }\n }, {\n props: {\n variant: 'regular'\n },\n style: theme.mixins.toolbar\n }]\n})));\nconst Toolbar = /*#__PURE__*/React.forwardRef(function Toolbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiToolbar'\n });\n const {\n className,\n component = 'div',\n disableGutters = false,\n variant = 'regular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableGutters,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ToolbarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Toolbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.\n * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, disables gutter padding.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'regular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dense', 'regular']), PropTypes.string])\n} : void 0;\nexport default Toolbar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getToolbarUtilityClass(slot) {\n return generateUtilityClass('MuiToolbar', slot);\n}\nconst toolbarClasses = generateUtilityClasses('MuiToolbar', ['root', 'gutters', 'regular', 'dense']);\nexport default 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{ Feature, measureText } from '@jbrowse/core/util'\nimport { Theme } from '@mui/material'\n\nexport function fillRect(\n ctx: CanvasRenderingContext2D,\n l: number,\n t: number,\n w: number,\n h: number,\n cw: number,\n color?: string,\n) {\n if (l + w < 0 || l > cw) {\n return\n }\n if (color) {\n ctx.fillStyle = color\n }\n ctx.fillRect(l, t, w, h)\n}\n\nexport function getColorBaseMap(theme: Theme) {\n const { bases } = theme.palette\n return {\n A: bases.A.main,\n C: bases.C.main,\n G: bases.G.main,\n T: bases.T.main,\n deletion: '#808080', // gray\n }\n}\n\nexport function getContrastBaseMap(theme: Theme) {\n return Object.fromEntries(\n Object.entries(getColorBaseMap(theme)).map(([key, value]) => [\n key,\n theme.palette.getContrastText(value),\n ]),\n )\n}\n\nexport function shouldDrawSNPsMuted(type?: string) {\n return ['methylation', 'modifications'].includes(type || '')\n}\n\nexport function shouldDrawIndels() {\n return true\n}\n\nexport interface LayoutFeature {\n heightPx: number\n topPx: number\n feature: Feature\n}\n\n// get width and height of chars the height is an approximation: width letter M\n// is approximately the height\nexport function getCharWidthHeight() {\n const charWidth = measureText('A')\n const charHeight = measureText('M') - 2\n return { charWidth, charHeight }\n}\n","import {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { Feature } from '@jbrowse/core/util'\nimport { fillColor } from '../shared/color'\nimport {\n colorByInsertSize,\n colorByMappingQuality,\n colorByOrientation,\n colorByStrand,\n colorByStrandedRnaSeq,\n} from './colorBy'\n\nexport function getAlignmentShapeColor({\n colorType,\n tag,\n feature,\n config,\n defaultColor,\n colorTagMap,\n}: {\n colorType: string\n tag: string\n feature: Feature\n defaultColor: boolean\n config: AnyConfigurationModel\n colorTagMap: Record\n}) {\n // first pass for simple color changes that change the color of the\n // alignment\n switch (colorType) {\n case 'insertSize':\n return colorByInsertSize(feature)\n case 'strand':\n return colorByStrand(feature)\n case 'mappingQuality':\n return colorByMappingQuality(feature)\n case 'pairOrientation':\n return colorByOrientation(feature, config)\n case 'stranded':\n return colorByStrandedRnaSeq(feature)\n case 'xs':\n case 'tag': {\n const tags = feature.get('tags')\n const val = tags ? tags[tag] : feature.get(tag)\n\n if (tag === 'XS' || tag === 'TS') {\n if (val === '-') {\n return fillColor.color_rev_strand\n } else if (val === '+') {\n return fillColor.color_fwd_strand\n } else {\n return fillColor.color_nostrand\n }\n }\n if (tag === 'ts') {\n if (val === '-') {\n return feature.get('strand') === -1\n ? fillColor.color_fwd_strand\n : fillColor.color_rev_strand\n } else if (val === '+') {\n return feature.get('strand') === -1\n ? fillColor.color_rev_strand\n : fillColor.color_fwd_strand\n } else {\n return fillColor.color_nostrand\n }\n }\n return colorTagMap[val] || fillColor.color_nostrand\n }\n case 'insertSizeAndPairOrientation':\n break\n\n case 'modifications':\n case 'methylation':\n // this coloring is similar to igv.js, and is helpful to color negative\n // strand reads differently because their c-g will be flipped (e.g. g-c\n // read right to left)\n return feature.get('flags') & 16 ? '#c8dcc8' : '#c8c8c8'\n\n default:\n return defaultColor\n ? 'lightgrey'\n : readConfObject(config, 'color', { feature })\n }\n}\n","import {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { Feature } from '@jbrowse/core/util'\nimport { fillColor } from '../shared/color'\nimport { orientationTypes } from '../util'\n\nexport function colorByInsertSize(feature: Feature) {\n return feature.get('is_paired') &&\n feature.get('refName') !== feature.get('next_ref')\n ? '#555'\n : `hsl(${Math.abs(feature.get('template_length')) / 10},50%,50%)`\n}\n\nexport function colorByMappingQuality(feature: Feature) {\n return `hsl(${feature.get('score')},50%,50%)`\n}\n\nfunction getOrientation(feature: Feature, config: AnyConfigurationModel) {\n const orientationType = readConfObject(config, 'orientationType') as\n | 'fr'\n | 'ff'\n | 'rf'\n const type = orientationTypes[orientationType]\n const orientation = type[feature.get('pair_orientation') as string]!\n return {\n LR: 'color_pair_lr' as const,\n RR: 'color_pair_rr' as const,\n RL: 'color_pair_rl' as const,\n LL: 'color_pair_ll' as const,\n }[orientation]\n}\n\nexport function colorByStrand(feature: Feature) {\n return feature.get('strand') === -1 ? '#8F8FD8' : '#EC8B8B'\n}\n\nexport function colorByOrientation(\n feature: Feature,\n config: AnyConfigurationModel,\n) {\n return fillColor[getOrientation(feature, config) || 'color_nostrand']\n}\nfunction getStranded(feature: Feature) {\n const flags = feature.get('flags')\n const strand = feature.get('strand')\n\n // is paired\n if (flags & 1) {\n // first-of-pair?\n const flipper = flags & 64 ? -1 : 1\n\n // proper pairing\n if (flags & 2) {\n return strand * flipper === 1 ? 'color_rev_strand' : 'color_fwd_strand'\n }\n // mate missing, separate color\n if (flags & 8) {\n return strand * flipper === 1\n ? 'color_rev_missing_mate'\n : 'color_fwd_missing_mate'\n }\n // same chrom without proper pairing gets separate color\n if (feature.get('refName') === feature.get('next_ref')) {\n return strand * flipper === 1\n ? 'color_rev_strand_not_proper'\n : 'color_fwd_strand_not_proper'\n }\n // abberant chrom\n\n return strand === 1 ? 'color_fwd_diff_chr' : 'color_rev_diff_chr'\n }\n return 'color_unknown'\n}\n\nexport function colorByStrandedRnaSeq(feature: Feature) {\n return fillColor[getStranded(feature)]\n}\n","import { LayoutFeature } from './util'\n\nimport { getAlignmentShapeColor } from './getAlignmentShapeColor'\nimport { renderAlignmentShape } from './renderAlignmentShape'\nimport { renderPerBaseQuality } from './renderPerBaseQuality'\nimport { renderPerBaseLettering } from './renderPerBaseLettering'\nimport { renderModifications } from './renderModifications'\nimport { renderMethylation } from './renderMethylation'\nimport { RenderArgsWithColor } from './makeImageData'\n\nexport function renderAlignment({\n ctx,\n feat,\n renderArgs,\n colorForBase,\n contrastForBase,\n charWidth,\n charHeight,\n defaultColor,\n canvasWidth,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n renderArgs: RenderArgsWithColor\n colorForBase: Record\n contrastForBase: Record\n charWidth: number\n charHeight: number\n defaultColor: boolean\n canvasWidth: number\n}) {\n const { config, bpPerPx, regions, colorBy, colorTagMap = {} } = renderArgs\n const { tag = '', type: colorType = '' } = colorBy || {}\n const { feature } = feat\n const region = regions[0]!\n\n ctx.fillStyle = getAlignmentShapeColor({\n feature,\n config,\n tag,\n defaultColor,\n colorType,\n colorTagMap,\n })\n\n renderAlignmentShape({ ctx, feat, renderArgs })\n\n // second pass for color types that render per-base things that go over the\n // existing drawing\n switch (colorType) {\n case 'perBaseQuality':\n renderPerBaseQuality({\n ctx,\n feat,\n region,\n bpPerPx,\n canvasWidth,\n })\n break\n\n case 'perBaseLettering':\n renderPerBaseLettering({\n ctx,\n feat,\n region,\n bpPerPx,\n colorForBase,\n contrastForBase,\n charWidth,\n charHeight,\n canvasWidth,\n })\n break\n\n case 'modifications':\n renderModifications({\n ctx,\n feat,\n region,\n bpPerPx,\n renderArgs,\n canvasWidth,\n })\n break\n\n case 'methylation':\n renderMethylation({\n ctx,\n feat,\n region,\n bpPerPx,\n renderArgs,\n canvasWidth,\n })\n break\n }\n}\n","import { bpSpanPx } from '@jbrowse/core/util'\nimport { RenderArgsDeserialized } from './PileupRenderer'\nimport { LayoutFeature } from './util'\n\nexport function renderAlignmentShape({\n ctx,\n feat,\n renderArgs,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n renderArgs: RenderArgsDeserialized\n}) {\n const { regions, bpPerPx } = renderArgs\n const { heightPx, topPx, feature } = feat\n const region = regions[0]!\n const s = feature.get('start')\n const e = feature.get('end')\n const [leftPx, rightPx] = bpSpanPx(s, e, region, bpPerPx)\n const flip = region.reversed ? -1 : 1\n const strand = feature.get('strand') * flip\n if (bpPerPx < 10 && heightPx > 5) {\n if (strand === -1) {\n ctx.beginPath()\n ctx.moveTo(leftPx - 5, topPx + heightPx / 2)\n ctx.lineTo(leftPx, topPx + heightPx)\n ctx.lineTo(rightPx, topPx + heightPx)\n ctx.lineTo(rightPx, topPx)\n ctx.lineTo(leftPx, topPx)\n ctx.closePath()\n ctx.fill()\n } else {\n ctx.beginPath()\n ctx.moveTo(leftPx, topPx)\n ctx.lineTo(leftPx, topPx + heightPx)\n ctx.lineTo(rightPx, topPx + heightPx)\n ctx.lineTo(rightPx + 5, topPx + heightPx / 2)\n ctx.lineTo(rightPx, topPx)\n ctx.closePath()\n ctx.fill()\n }\n } else {\n ctx.fillRect(leftPx, topPx, rightPx - leftPx, heightPx)\n }\n}\n","import { bpSpanPx, Region } from '@jbrowse/core/util'\nimport { parseCigar } from '../MismatchParser'\nimport { fillRect, LayoutFeature } from './util'\n\nexport function renderPerBaseQuality({\n ctx,\n feat,\n region,\n bpPerPx,\n canvasWidth,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n region: Region\n bpPerPx: number\n canvasWidth: number\n}) {\n const { feature, topPx, heightPx } = feat\n const qual: string = feature.get('qual') || ''\n const scores = qual.split(' ').map(val => +val)\n const cigarOps = parseCigar(feature.get('CIGAR'))\n const w = 1 / bpPerPx\n const start = feature.get('start')\n let soffset = 0 // sequence offset\n let roffset = 0 // reference offset\n\n for (let i = 0; i < cigarOps.length; i += 2) {\n const len = +cigarOps[i]!\n const op = cigarOps[i + 1]!\n if (op === 'S' || op === 'I') {\n soffset += len\n } else if (op === 'D' || op === 'N') {\n roffset += len\n } else if (op === 'M' || op === 'X' || op === '=') {\n for (let m = 0; m < len; m++) {\n const score = scores[soffset + m]!\n const start0 = start + roffset + m\n const leftPx = bpSpanPx(start0, start0 + 1, region, bpPerPx)[0]\n const c = `hsl(${score === 255 ? 150 : score * 1.5},55%,50%)`\n fillRect(ctx, leftPx, topPx, w + 0.5, heightPx, canvasWidth, c)\n }\n soffset += len\n roffset += len\n }\n }\n}\n","import { bpSpanPx, Region } from '@jbrowse/core/util'\nimport { parseCigar } from '../MismatchParser'\nimport { fillRect, LayoutFeature } from './util'\n\nexport function renderPerBaseLettering({\n ctx,\n feat,\n region,\n bpPerPx,\n colorForBase,\n contrastForBase,\n charWidth,\n charHeight,\n canvasWidth,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n region: Region\n bpPerPx: number\n colorForBase: Record\n contrastForBase: Record\n charWidth: number\n charHeight: number\n canvasWidth: number\n}) {\n const heightLim = charHeight - 2\n const { feature, topPx, heightPx } = feat\n const seq = feature.get('seq') as string | undefined\n const cigarOps = parseCigar(feature.get('CIGAR'))\n const w = 1 / bpPerPx\n const start = feature.get('start')\n let soffset = 0\n let roffset = 0\n\n if (!seq) {\n return\n }\n for (let i = 0; i < cigarOps.length; i += 2) {\n const len = +cigarOps[i]!\n const op = cigarOps[i + 1]!\n if (op === 'S' || op === 'I') {\n soffset += len\n } else if (op === 'D' || op === 'N') {\n roffset += len\n } else if (op === 'M' || op === 'X' || op === '=') {\n for (let m = 0; m < len; m++) {\n const letter = seq[soffset + m]!\n const r = start + roffset + m\n const [leftPx] = bpSpanPx(r, r + 1, region, bpPerPx)\n const c = colorForBase[letter]\n fillRect(ctx, leftPx, topPx, w + 0.5, heightPx, canvasWidth, c)\n\n if (w >= charWidth && heightPx >= heightLim) {\n // normal SNP coloring\n ctx.fillStyle = contrastForBase[letter]!\n ctx.fillText(\n letter,\n leftPx + (w - charWidth) / 2 + 1,\n topPx + heightPx,\n )\n }\n }\n soffset += len\n roffset += len\n }\n }\n}\n","import { bpSpanPx, Region } from '@jbrowse/core/util'\nimport {\n getModificationPositions,\n getModificationProbabilities,\n getNextRefPos,\n parseCigar,\n} from '../MismatchParser'\nimport { getTagAlt } from '../util'\nimport { fillRect, LayoutFeature } from './util'\nimport { RenderArgsWithColor } from './makeImageData'\nimport { colord } from '@jbrowse/core/util/colord'\n\n// render modifications stored in MM tag in BAM\n//\n// ML stores probabilities as array of numerics and MP is scaled phred scores\n// https://github.com/samtools/hts-specs/pull/418/files#diff-e765c6479316309f56b636f88189cdde8c40b854c7bdcce9ee7fe87a4e76febcR596\n//\n// if we have ML or Ml, it is an 8bit probability, divide by 255\n//\n// if we have MP or Mp it is phred scaled ASCII, which can go up to 90 but\n// has very high likelihood basecalls at that point, we really only care\n// about low qual calls <20 approx\nexport function renderModifications({\n ctx,\n feat,\n region,\n bpPerPx,\n renderArgs,\n canvasWidth,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n region: Region\n bpPerPx: number\n renderArgs: RenderArgsWithColor\n canvasWidth: number\n}) {\n const { feature, topPx, heightPx } = feat\n const { modificationTagMap = {} } = renderArgs\n\n const seq = feature.get('seq') as string | undefined\n\n if (!seq) {\n return\n }\n const mm = (getTagAlt(feature, 'MM', 'Mm') as string) || ''\n const cigar = feature.get('CIGAR')\n const start = feature.get('start')\n const strand = feature.get('strand')\n const cigarOps = parseCigar(cigar)\n const probabilities = getModificationProbabilities(feature)\n const modifications = getModificationPositions(mm, seq, strand)\n\n // probIndex applies across multiple modifications e.g.\n let probIndex = 0\n for (const { type, positions } of modifications) {\n const col = modificationTagMap[type] || 'black'\n const base = colord(col)\n for (const readPos of getNextRefPos(cigarOps, positions)) {\n const r = start + readPos\n const [leftPx, rightPx] = bpSpanPx(r, r + 1, region, bpPerPx)\n const prob = probabilities?.[probIndex] || 0\n const c = prob !== 1 ? base.alpha(prob + 0.1).toHslString() : col\n const w = rightPx - leftPx + 0.5\n fillRect(ctx, leftPx, topPx, w, heightPx, canvasWidth, c)\n probIndex++\n }\n }\n}\n","import { bpSpanPx, Region } from '@jbrowse/core/util'\nimport { getMethBins } from '../MismatchParser'\nimport { fillRect, LayoutFeature } from './util'\nimport { RenderArgsWithColor } from './makeImageData'\nimport { colord } from '@jbrowse/core/util/colord'\n\n// Color by methylation is slightly modified version of color by\n// modifications that focuses on CpG sites, with non-methylated CpG colored\nexport function renderMethylation({\n ctx,\n feat,\n region,\n bpPerPx,\n renderArgs,\n canvasWidth,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n region: Region\n bpPerPx: number\n renderArgs: RenderArgsWithColor\n canvasWidth: number\n}) {\n const { regionSequence } = renderArgs\n const { feature, topPx, heightPx } = feat\n if (!regionSequence) {\n throw new Error('region sequence required for methylation')\n }\n\n const seq = feature.get('seq') as string | undefined\n if (!seq) {\n return\n }\n const fstart = feature.get('start')\n const fend = feature.get('end')\n const { methBins, methProbs } = getMethBins(feature)\n\n function getCol(k: number) {\n if (methBins[k]) {\n const p = methProbs[k] || 0\n return (\n p > 0.5\n ? colord('red').alpha((p - 0.5) * 2)\n : colord('blue').alpha(1 - p * 2)\n ).toHslString()\n }\n return undefined\n }\n for (let i = 0; i < fend - fstart; i++) {\n const j = i + fstart\n const l1 = regionSequence[j - region.start + 1]?.toLowerCase()\n const l2 = regionSequence[j - region.start + 2]?.toLowerCase()\n\n if (l1 === 'c' && l2 === 'g') {\n if (bpPerPx > 2) {\n const [leftPx, rightPx] = bpSpanPx(j, j + 2, region, bpPerPx)\n const w = rightPx - leftPx + 0.5\n const c = getCol(i) || getCol(i + 1) || 'blue'\n fillRect(ctx, leftPx, topPx, w, heightPx, canvasWidth, c)\n } else {\n const [leftPx, rightPx] = bpSpanPx(j, j + 1, region, bpPerPx)\n const w = rightPx - leftPx + 0.5\n const c = getCol(i) || 'blue'\n fillRect(ctx, leftPx, topPx, w, heightPx, canvasWidth, c)\n const [leftPx2, rightPx2] = bpSpanPx(j + 1, j + 2, region, bpPerPx)\n const w2 = rightPx2 - leftPx2 + 0.5\n const c2 = getCol(i + 1) || 'blue'\n fillRect(ctx, leftPx2, topPx, w2, heightPx, canvasWidth, c2)\n }\n }\n }\n}\n","import { bpSpanPx, measureText } from '@jbrowse/core/util'\nimport { Mismatch } from '../MismatchParser'\nimport { fillRect, LayoutFeature } from './util'\nimport { RenderArgsWithColor } from './makeImageData'\nimport { colord } from '@jbrowse/core/util/colord'\n\nexport function renderMismatches({\n ctx,\n feat,\n renderArgs,\n minSubfeatureWidth,\n largeInsertionIndicatorScale,\n mismatchAlpha,\n charWidth,\n charHeight,\n colorForBase,\n contrastForBase,\n canvasWidth,\n drawSNPsMuted,\n drawIndels = true,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n renderArgs: RenderArgsWithColor\n colorForBase: Record\n contrastForBase: Record\n mismatchAlpha?: boolean\n drawIndels?: boolean\n drawSNPsMuted?: boolean\n minSubfeatureWidth: number\n largeInsertionIndicatorScale: number\n charWidth: number\n charHeight: number\n canvasWidth: number\n}) {\n const { bpPerPx, regions } = renderArgs\n const { heightPx, topPx, feature } = feat\n const region = regions[0]!\n const start = feature.get('start')\n\n const pxPerBp = Math.min(1 / bpPerPx, 2)\n const mismatches = feature.get('mismatches') as Mismatch[] | undefined\n const heightLim = charHeight - 2\n\n // extraHorizontallyFlippedOffset is used to draw interbase items, which\n // are located to the left when forward and right when reversed\n const extraHorizontallyFlippedOffset = region.reversed ? 1 / bpPerPx + 1 : -1\n\n if (!mismatches) {\n return\n }\n\n // two pass rendering: first pass, draw all the mismatches except wide\n // insertion markers\n for (const mismatch of mismatches) {\n const mstart = start + mismatch.start\n const mlen = mismatch.length\n const mbase = mismatch.base\n const [leftPx, rightPx] = bpSpanPx(mstart, mstart + mlen, region, bpPerPx)\n const widthPx = Math.max(minSubfeatureWidth, Math.abs(leftPx - rightPx))\n if (mismatch.type === 'mismatch') {\n if (!drawSNPsMuted) {\n const baseColor = colorForBase[mismatch.base] || '#888'\n const c = mismatchAlpha\n ? mismatch.qual === undefined\n ? baseColor\n : colord(baseColor)\n .alpha(Math.min(1, mismatch.qual / 50))\n .toHslString()\n : baseColor\n\n fillRect(\n ctx,\n Math.round(leftPx),\n topPx,\n widthPx,\n heightPx,\n canvasWidth,\n c,\n )\n }\n\n if (widthPx >= charWidth && heightPx >= heightLim) {\n // normal SNP coloring\n const contrastColor = drawSNPsMuted\n ? 'black'\n : contrastForBase[mismatch.base] || 'black'\n ctx.fillStyle = mismatchAlpha\n ? mismatch.qual === undefined\n ? contrastColor\n : colord(contrastColor)\n .alpha(Math.min(1, mismatch.qual / 50))\n .toHslString()\n : contrastColor\n ctx.fillText(\n mbase,\n leftPx + (widthPx - charWidth) / 2 + 1,\n topPx + heightPx,\n )\n }\n } else if (mismatch.type === 'deletion' && drawIndels) {\n fillRect(\n ctx,\n leftPx,\n topPx,\n Math.abs(leftPx - rightPx),\n heightPx,\n canvasWidth,\n colorForBase.deletion,\n )\n const txt = `${mismatch.length}`\n const rwidth = measureText(txt, 10)\n if (widthPx >= rwidth && heightPx >= heightLim) {\n ctx.fillStyle = contrastForBase.deletion!\n ctx.fillText(txt, (leftPx + rightPx) / 2 - rwidth / 2, topPx + heightPx)\n }\n } else if (mismatch.type === 'insertion' && drawIndels) {\n ctx.fillStyle = 'purple'\n const pos = leftPx + extraHorizontallyFlippedOffset\n const len = +mismatch.base || mismatch.length\n const insW = Math.max(0, Math.min(1.2, 1 / bpPerPx))\n if (len < 10) {\n fillRect(ctx, pos, topPx, insW, heightPx, canvasWidth, 'purple')\n if (1 / bpPerPx >= charWidth && heightPx >= heightLim) {\n const l = pos - insW\n fillRect(ctx, l, topPx, insW * 3, 1, canvasWidth)\n fillRect(ctx, l, topPx + heightPx - 1, insW * 3, 1, canvasWidth)\n ctx.fillText(`(${mismatch.base})`, pos + 3, topPx + heightPx)\n }\n }\n } else if (mismatch.type === 'hardclip' || mismatch.type === 'softclip') {\n const pos = leftPx + extraHorizontallyFlippedOffset\n const c = mismatch.type === 'hardclip' ? 'red' : 'blue'\n const clipW = Math.max(minSubfeatureWidth, pxPerBp)\n fillRect(ctx, pos, topPx, clipW, heightPx, canvasWidth, c)\n if (1 / bpPerPx >= charWidth && heightPx >= heightLim) {\n const l = pos - clipW\n fillRect(ctx, l, topPx, clipW * 3, 1, canvasWidth)\n fillRect(ctx, l, topPx + heightPx - 1, clipW * 3, 1, canvasWidth)\n ctx.fillText(`(${mismatch.base})`, pos + 3, topPx + heightPx)\n }\n } else if (mismatch.type === 'skip') {\n // fix to avoid bad rendering note that this was also related to chrome\n // bug https://bugs.chromium.org/p/chromium/issues/detail?id=1131528\n // also affected firefox ref #1236 #2750\n if (leftPx + widthPx > 0) {\n // make small exons more visible when zoomed far out\n const adjustPx = widthPx - (bpPerPx > 10 ? 1.5 : 0)\n ctx.clearRect(leftPx, topPx, adjustPx, heightPx)\n fillRect(\n ctx,\n Math.max(0, leftPx),\n topPx + heightPx / 2 - 1,\n adjustPx + (leftPx < 0 ? leftPx : 0),\n 2,\n canvasWidth,\n '#333',\n )\n }\n }\n }\n\n // second pass, draw wide insertion markers on top\n if (drawIndels) {\n for (const mismatch of mismatches) {\n const mstart = start + mismatch.start\n const mlen = mismatch.length\n const [leftPx] = bpSpanPx(mstart, mstart + mlen, region, bpPerPx)\n const len = +mismatch.base || mismatch.length\n const txt = `${len}`\n if (mismatch.type === 'insertion' && len >= 10) {\n if (bpPerPx > largeInsertionIndicatorScale) {\n fillRect(ctx, leftPx - 1, topPx, 2, heightPx, canvasWidth, 'purple')\n } else if (heightPx > charHeight) {\n const rwidth = measureText(txt)\n const padding = 5\n fillRect(\n ctx,\n leftPx - rwidth / 2 - padding,\n topPx,\n rwidth + 2 * padding,\n heightPx,\n canvasWidth,\n 'purple',\n )\n ctx.fillStyle = 'white'\n ctx.fillText(txt, leftPx - rwidth / 2, topPx + heightPx)\n } else {\n const padding = 2\n fillRect(\n ctx,\n leftPx - padding,\n topPx,\n 2 * padding,\n heightPx,\n canvasWidth,\n 'purple',\n )\n }\n }\n }\n }\n}\n","import {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { bpSpanPx } from '@jbrowse/core/util'\nimport { Theme } from '@mui/material'\n\n// locals\nimport { Mismatch, parseCigar } from '../MismatchParser'\nimport { RenderArgsDeserializedWithFeaturesAndLayout } from './PileupRenderer'\nimport { fillRect, getCharWidthHeight, LayoutFeature } from './util'\n\nexport function renderSoftClipping({\n ctx,\n feat,\n renderArgs,\n config,\n theme,\n colorForBase,\n canvasWidth,\n}: {\n ctx: CanvasRenderingContext2D\n feat: LayoutFeature\n renderArgs: RenderArgsDeserializedWithFeaturesAndLayout\n config: AnyConfigurationModel\n colorForBase: Record\n theme: Theme\n canvasWidth: number\n}) {\n const { feature, topPx, heightPx } = feat\n const { regions, bpPerPx } = renderArgs\n const region = regions[0]!\n const minFeatWidth = readConfObject(config, 'minSubfeatureWidth')\n const mismatches = feature.get('mismatches') as Mismatch[] | undefined\n const seq = feature.get('seq') as string | undefined\n const { charWidth, charHeight } = getCharWidthHeight()\n\n // Display all bases softclipped off in lightened colors\n if (!(seq && mismatches)) {\n return\n }\n\n const heightLim = charHeight - 2\n const CIGAR = parseCigar(feature.get('CIGAR'))\n let seqOffset = 0\n let refOffset = 0\n for (let i = 0; i < CIGAR.length; i += 2) {\n const op = CIGAR[i + 1]!\n const len = +CIGAR[i]!\n if (op === 'S') {\n for (let k = 0; k < len; k++) {\n const base = seq[seqOffset + k]!\n const s0 = feature.get('start') - (i === 0 ? len : 0) + refOffset + k\n const [leftPx, rightPx] = bpSpanPx(s0, s0 + 1, region, bpPerPx)\n const widthPx = Math.max(minFeatWidth, rightPx - leftPx)\n\n // Black accounts for IUPAC ambiguity code bases such as N that\n // show in soft clipping\n const baseColor = colorForBase[base] || '#000000'\n ctx.fillStyle = baseColor\n fillRect(ctx, leftPx, topPx, widthPx, heightPx, canvasWidth)\n\n if (widthPx >= charWidth && heightPx >= heightLim) {\n ctx.fillStyle = theme.palette.getContrastText(baseColor)\n ctx.fillText(\n base,\n leftPx + (widthPx - charWidth) / 2 + 1,\n topPx + heightPx,\n )\n }\n }\n seqOffset += len\n }\n if (op === 'N') {\n refOffset += len\n }\n if (op === 'M' || op === '=' || op === 'X') {\n refOffset += len\n seqOffset += len\n }\n if (op === 'H') {\n // do nothing\n }\n if (op === 'D') {\n refOffset += len\n }\n if (op === 'I') {\n seqOffset += len\n }\n }\n}\n","import { Feature } from '@jbrowse/core/util'\nimport { RenderArgsDeserializedWithFeaturesAndLayout } from './PileupRenderer'\nimport { readConfObject } from '@jbrowse/core/configuration'\nimport { createJBrowseTheme } from '@jbrowse/core/ui'\nimport {\n getCharWidthHeight,\n getColorBaseMap,\n getContrastBaseMap,\n shouldDrawIndels,\n shouldDrawSNPsMuted,\n} from './util'\nimport { renderAlignment } from './renderAlignment'\nimport { renderMismatches } from './renderMismatches'\nimport { renderSoftClipping } from './renderSoftClipping'\n\nexport type RenderArgsWithColor = RenderArgsDeserializedWithFeaturesAndLayout\n\ninterface LayoutFeature {\n heightPx: number\n topPx: number\n feature: Feature\n}\n\nexport function makeImageData({\n ctx,\n layoutRecords,\n canvasWidth,\n renderArgs,\n}: {\n ctx: CanvasRenderingContext2D\n canvasWidth: number\n layoutRecords: LayoutFeature[]\n renderArgs: RenderArgsWithColor\n}) {\n const { config, showSoftClip, colorBy, theme: configTheme } = renderArgs\n const mismatchAlpha = readConfObject(config, 'mismatchAlpha')\n const minSubfeatureWidth = readConfObject(config, 'minSubfeatureWidth')\n const largeInsertionIndicatorScale = readConfObject(\n config,\n 'largeInsertionIndicatorScale',\n )\n const defaultColor = readConfObject(config, 'color') === '#f0f'\n const theme = createJBrowseTheme(configTheme)\n const colorForBase = getColorBaseMap(theme)\n const contrastForBase = getContrastBaseMap(theme)\n ctx.font = 'bold 10px Courier New,monospace'\n\n const { charWidth, charHeight } = getCharWidthHeight()\n const drawSNPsMuted = shouldDrawSNPsMuted(colorBy?.type)\n const drawIndels = shouldDrawIndels()\n for (const feat of layoutRecords) {\n renderAlignment({\n ctx,\n feat,\n renderArgs,\n defaultColor,\n colorForBase,\n contrastForBase,\n charWidth,\n charHeight,\n canvasWidth,\n })\n renderMismatches({\n ctx,\n feat,\n renderArgs,\n mismatchAlpha,\n drawSNPsMuted,\n drawIndels,\n largeInsertionIndicatorScale,\n minSubfeatureWidth,\n charWidth,\n charHeight,\n colorForBase,\n contrastForBase,\n canvasWidth,\n })\n if (showSoftClip) {\n renderSoftClipping({\n ctx,\n feat,\n renderArgs,\n colorForBase,\n config,\n theme,\n canvasWidth,\n })\n }\n }\n return undefined\n}\n"],"names":["fillRect","ctx","l","t","w","h","cw","color","fillStyle","getColorBaseMap","theme","bases","palette","A","main","C","G","T","deletion","getCharWidthHeight","charWidth","measureText","charHeight","getAlignmentShapeColor","colorType","tag","feature","config","defaultColor","colorTagMap","get","Math","abs","colorByInsertSize","colorByStrand","colorByMappingQuality","fillColor","orientationType","readConfObject","LR","RR","RL","LL","orientationTypes","getOrientation","colorByOrientation","flags","strand","flipper","getStranded","colorByStrandedRnaSeq","tags","val","color_rev_strand","color_fwd_strand","color_nostrand","renderAlignment","feat","renderArgs","colorForBase","contrastForBase","canvasWidth","bpPerPx","regions","colorBy","type","region","heightPx","topPx","s","e","leftPx","rightPx","bpSpanPx","flip","reversed","beginPath","moveTo","lineTo","closePath","fill","renderAlignmentShape","scores","split","map","cigarOps","parseCigar","start","soffset","roffset","i","length","len","op","m","score","start0","renderPerBaseQuality","heightLim","seq","letter","r","fillText","renderPerBaseLettering","modificationTagMap","mm","getTagAlt","cigar","probabilities","getModificationProbabilities","modifications","getModificationPositions","probIndex","positions","col","base","colord","readPos","getNextRefPos","prob","alpha","toHslString","renderModifications","regionSequence","Error","fstart","fend","methBins","methProbs","getMethBins","getCol","k","p","j","l1","toLowerCase","l2","leftPx2","rightPx2","renderMethylation","renderMismatches","minSubfeatureWidth","largeInsertionIndicatorScale","mismatchAlpha","drawSNPsMuted","drawIndels","pxPerBp","min","mismatches","extraHorizontallyFlippedOffset","mismatch","mstart","mlen","mbase","widthPx","max","baseColor","c","undefined","qual","round","contrastColor","txt","rwidth","pos","insW","clipW","adjustPx","clearRect","padding","renderSoftClipping","minFeatWidth","CIGAR","seqOffset","refOffset","s0","getContrastText","makeImageData","layoutRecords","showSoftClip","configTheme","createJBrowseTheme","Object","fromEntries","entries","key","value","getContrastBaseMap","font","includes"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/4133.451f5e47.chunk.js --- a/x/static/js/4133.451f5e47.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[4133,7706],{47046:(t,e,r)=>{r.d(e,{A:()=>a});class n{}class s{constructor(){this.signals=new Set,this.abortController=new AbortController}addSignal(t=new n){if(this.signal.aborted)throw new Error("cannot add a signal, already aborted!");this.signals.add(t),t.aborted?this.handleAborted(t):"function"==typeof t.addEventListener&&t.addEventListener("abort",(()=>{this.handleAborted(t)}))}handleAborted(t){this.signals.delete(t),0===this.signals.size&&this.abortController.abort()}get signal(){return this.abortController.signal}abort(){this.abortController.abort()}}class i{constructor(){this.callbacks=new Set}addCallback(t=()=>{}){this.callbacks.add(t),t(this.currentMessage)}callback(t){this.currentMessage=t;for(const e of this.callbacks)e(t)}}class a{constructor({fill:t,cache:e}){if("function"!=typeof t)throw new TypeError("must pass a fill function");if("object"!=typeof e)throw new TypeError("must pass a cache object");if("function"!=typeof e.get||"function"!=typeof e.set||"function"!=typeof e.delete)throw new TypeError("cache must implement get(key), set(key, val), and and delete(key)");this.cache=e,this.fillCallback=t}static isAbortException(t){return"AbortError"===t.name||"ERR_ABORTED"===t.code||"AbortError: aborted"===t.message||"Error: aborted"===t.message}evict(t,e){this.cache.get(t)===e&&this.cache.delete(t)}fill(t,e,r,n){const a=new s,o=new i;o.addCallback(n);const h={aborter:a,promise:this.fillCallback(e,a.signal,(t=>{o.callback(t)})),settled:!1,statusReporter:o,get aborted(){return 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e=this.cache.get(t);e&&(e.settled||e.aborter.abort(),this.cache.delete(t))}clear(){const t=this.cache.keys();let e=0;for(let r=t.next();!r.done;r=t.next())this.delete(r.value),e+=1;return e}}},34133:(t,e,r)=>{r.d(e,{j9:()=>C,Wg:()=>A});class n{constructor(t,e){this.blockPosition=t,this.dataPosition=e}toString(){return`${this.blockPosition}:${this.dataPosition}`}compareTo(t){return this.blockPosition-t.blockPosition||this.dataPosition-t.dataPosition}static min(...t){let e,r=0;for(;!e;r+=1)e=t[r];for(;r0&&(e=t[r]);return e}}function s(t,e=0,r=!1){if(r)throw new Error("big-endian virtual file offsets not implemented");return new n(1099511627776*t[e+7]+4294967296*t[e+6]+16777216*t[e+5]+65536*t[e+4]+256*t[e+3]+t[e+2],t[e+1]<<8|t[e])}class i{constructor(t,e,r,n){this.minv=t,this.maxv=e,this.bin=r,this._fetchedSize=n}toUniqueString(){return`${this.minv.toString()}..${this.maxv.toString()} (bin ${this.bin}, fetchedSize ${this.fetchedSize()})`}toString(){return this.toUniqueString()}compareTo(t){return this.minv.compareTo(t.minv)||this.maxv.compareTo(t.maxv)||this.bin-t.bin}fetchedSize(){return void 0!==this._fetchedSize?this._fetchedSize:this.maxv.blockPosition+65536-this.minv.blockPosition}}var a=r(59086),o=r.n(a);function h(t){return new Promise((e=>setTimeout(e,t)))}function l(t,e){const r=[];let n;if(0===t.length)return t;t.sort(((t,e)=>{const r=t.minv.blockPosition-e.minv.blockPosition;return 0===r?t.minv.dataPosition-e.minv.dataPosition:r}));for(const a of t)(!e||a.maxv.compareTo(e)>0)&&(void 0===n?(r.push(a),n=a):(s=n,(i=a).minv.blockPosition-s.maxv.blockPosition<65e3&&i.maxv.blockPosition-s.minv.blockPosition<5e6?a.maxv.compareTo(n.maxv)>0&&(n.maxv=a.maxv):(r.push(a),n=a)));var s,i;return r}function c(t,e){return{lineCount:function(t){if(t.greaterThan(Number.MAX_SAFE_INTEGER)||t.lessThan(Number.MIN_SAFE_INTEGER))throw new Error("integer overflow");return t.toNumber()}(o().fromBytesLE(Array.prototype.slice.call(t,e,e+8),!0))}}function d(t,e){return t?t.compareTo(e)>0?e:t:e}function f(t,e=t=>t){let r=0,n=0;const s=[],i={};for(let a=0;at}){this.filehandle=t,this.renameRefSeq=e}}class g extends u{async lineCount(t,e){var r,n;return(null===(n=null===(r=(await this.parse(e)).indices[t])||void 0===r?void 0:r.stats)||void 0===n?void 0:n.lineCount)||0}async _parse(t){const e=await this.filehandle.readFile(t);if(21578050!==e.readUInt32LE(0))throw new Error("Not a BAI file");const r=e.readInt32LE(4);let n,a=8;const o=new Array(r);for(let t=0;t37450)throw new Error("bai index contains too many bins, please use CSI");{const r=e.readInt32LE(a);a+=4;const o=new Array(r);for(let h=0;h(o.length-1)*s)throw new Error("query outside of range of linear index");let g=o[d/s].blockPosition;for(let t=d/s,e=0;t({...t,score:t.score*((null==h?void 0:h.lineCount)||0)/u})))}async blocksForRange(t,e,r,n={}){e<0&&(e=0);const s=await this.parse(n);if(!s)return[];const i=s.indices[t];if(!i)return[];const a=(h=r,[[0,0],[1+((o=e)>>26),1+((h-=1)>>26)],[9+(o>>23),9+(h>>23)],[73+(o>>20),73+(h>>20)],[585+(o>>17),585+(h>>17)],[4681+(o>>14),4681+(h>>14)]]);var o,h;const c=[];for(const[t,e]of a)for(let r=t;r<=e;r++)if(i.binIndex[r]){const t=i.binIndex[r];for(const e of t)c.push(e)}const d=i.linearIndex.length;let f;const u=Math.min(e>>14,d-1),g=Math.min(r>>14,d-1);for(let t=u;t<=g;++t){const e=i.linearIndex[t];e&&(!f||e.compareTo(f)<0)&&(f=e)}return l(c,f)}async parse(t={}){return this.setupP||(this.setupP=this._parse(t).catch((t=>{throw this.setupP=void 0,t}))),this.setupP}async hasRefSeq(t,e={}){var r;return!!(null===(r=(await this.parse(e)).indices[t])||void 0===r?void 0:r.binIndex)}}var b=r(35451),m=r(91454),p=r(7706),w=r(45834),_=r(47046),y=r(16308),v=r.n(y);function E(t,e){return Math.floor(t/2**e)}class x extends u{constructor(){super(...arguments),this.maxBinNumber=0,this.depth=0,this.minShift=0}async lineCount(t,e){var r,n;return(null===(n=null===(r=(await this.parse(e)).indices[t])||void 0===r?void 0:r.stats)||void 0===n?void 0:n.lineCount)||0}async indexCov(){return[]}parseAuxData(t,e){const r=t.readInt32LE(e),n=65536&r?"zero-based-half-open":"1-based-closed",s={0:"generic",1:"SAM",2:"VCF"}[15&r];if(!s)throw new Error(`invalid Tabix preset format flags ${r}`);const i={ref:t.readInt32LE(e+4),start:t.readInt32LE(e+8),end:t.readInt32LE(e+12)},a=t.readInt32LE(e+16),o=a?String.fromCharCode(a):"",h=t.readInt32LE(e+20),l=t.readInt32LE(e+24);return{columnNumbers:i,coordinateType:n,metaValue:a,metaChar:o,skipLines:h,format:s,formatFlags:r,...f(t.subarray(e+28,e+28+l),this.renameRefSeq)}}async _parse(t){const e=await this.filehandle.readFile(t),r=await(0,p.unzip)(e);let n;if(21582659===r.readUInt32LE(0))n=1;else{if(38359875!==r.readUInt32LE(0))throw new Error("Not a CSI file");n=2}this.minShift=r.readInt32LE(4),this.depth=r.readInt32LE(8),this.maxBinNumber=((1<<3*(this.depth+1))-1)/7;const a=r.readInt32LE(12),o=a>=30?this.parseAuxData(r,16):void 0,h=r.readInt32LE(16+a);let l,f=16+a+4;const u=new Array(h);for(let t=0;tthis.maxBinNumber)a=c(r,f+28),f+=44;else{l=d(l,s(r,f)),f+=8;const e=r.readInt32LE(f);f+=4;const a=new Array(e);for(let n=0;n2**50&&(e=2**34),e-=1;let r=0,n=0,s=this.minShift+3*this.depth;const i=[];for(;r<=this.depth;s-=3,n+=1*2**(3*r),r+=1){const r=n+E(t,s),a=n+E(e,s);if(a-r+i.length>this.maxBinNumber)throw new Error(`query ${t}-${e} is too large for current binning scheme (shift ${this.minShift}, depth ${this.depth}), try a smaller query or a coarser index binning scheme`);i.push([r,a])}return i}async parse(t={}){return this.setupP||(this.setupP=this._parse(t).catch((t=>{throw this.setupP=void 0,t}))),this.setupP}async hasRefSeq(t,e={}){var r;return!!(null===(r=(await this.parse(e)).indices[t])||void 0===r?void 0:r.binIndex)}}const I="=ACMGRSVTWYHKDBN".split(""),k="MIDNSHP=X???????".split("");class S{constructor(t){this.data={},this._tagList=[],this._allTagsParsed=!1;const{bytes:e,fileOffset:r}=t,{byteArray:n,start:s}=e;this.data={start:n.readInt32LE(s+8)},this.bytes=e,this._id=r,this._refID=n.readInt32LE(s+4),this.flags=(4294901760&n.readInt32LE(s+16))>>16}get(t){return this[t]?(this.data[t]||(this.data[t]=this[t]()),this.data[t]):this._get(t.toLowerCase())}end(){return this.get("start")+this.get("length_on_ref")}seq_id(){return this._refID}_get(t){return t in this.data||(this.data[t]=this._parseTag(t)),this.data[t]}_tags(){this._parseAllTags();let t=["seq"];this.isSegmentUnmapped()||t.push("start","end","strand","score","qual","MQ","CIGAR","length_on_ref","template_length"),this.isPaired()&&t.push("next_segment_position","pair_orientation"),t=t.concat(this._tagList||[]);for(const e of Object.keys(this.data))e.startsWith("_")||"next_seq_id"===e||t.push(e);const e={};return t.filter((t=>{if(t in this.data&&void 0===this.data[t]||"CG"===t||"cg"===t)return!1;const r=t.toLowerCase(),n=e[r];return e[r]=!0,!n}))}parent(){}children(){return this.get("subfeatures")}id(){return this._id}mq(){const t=(65280&this.get("_bin_mq_nl"))>>8;return 255===t?void 0:t}score(){return this.get("mq")}qual(){var t;return null===(t=this.qualRaw())||void 0===t?void 0:t.join(" ")}qualRaw(){if(this.isSegmentUnmapped())return;const{start:t,byteArray:e}=this.bytes,r=t+36+this.get("_l_read_name")+4*this.get("_n_cigar_op")+this.get("_seq_bytes"),n=this.get("seq_length");return e.subarray(r,r+n)}strand(){return this.isReverseComplemented()?-1:1}multi_segment_next_segment_strand(){if(!this.isMateUnmapped())return this.isMateReverseComplemented()?-1:1}name(){return this.get("_read_name")}_read_name(){const t=this.get("_l_read_name"),{byteArray:e,start:r}=this.bytes;return e.toString("ascii",r+36,r+36+t-1)}_parseTag(t){if(this._allTagsParsed)return;const{byteArray:e,start:r}=this.bytes;let n=this._tagOffset||r+36+this.get("_l_read_name")+4*this.get("_n_cigar_op")+this.get("_seq_bytes")+this.get("seq_length");const s=this.bytes.end;let i;for(;n>4)+k[15&t],n+=4}else for(let t=0;t>4)+k[15&t],n+=4}else for(let t=0;t[/\D/.exec(t)[0].toUpperCase(),Number.parseInt(t,10)]))}isPaired(){return!!(1&this.flags)}isProperlyPaired(){return!!(2&this.flags)}isSegmentUnmapped(){return!!(4&this.flags)}isMateUnmapped(){return!!(8&this.flags)}isReverseComplemented(){return!!(16&this.flags)}isMateReverseComplemented(){return!!(32&this.flags)}isRead1(){return!!(64&this.flags)}isRead2(){return!!(128&this.flags)}isSecondary(){return!!(256&this.flags)}isFailedQc(){return!!(512&this.flags)}isDuplicate(){return!!(1024&this.flags)}isSupplementary(){return!!(2048&this.flags)}cigar(){if(this.isSegmentUnmapped())return;const{byteArray:t,start:e}=this.bytes,r=this.get("_n_cigar_op");let n=e+36+this.get("_l_read_name");const s=this.get("seq_length");let i="",a=0,o=t.readInt32LE(n),h=o>>4,l=k[15&o];if("S"===l&&h===s)return n+=4,o=t.readInt32LE(n),h=o>>4,l=k[15&o],"N"!==l&&console.warn("CG tag with no N tag"),this.data.length_on_ref=h,this.get("CG");for(let e=0;e>4,l=k[15&o],i+=h+l,"H"!==l&&"S"!==l&&"I"!==l&&(a+=h),n+=4;return this.data.length_on_ref=a,i}length_on_ref(){return this.data.length_on_ref||this.get("cigar"),this.data.length_on_ref}_n_cigar_op(){return 65535&this.get("_flag_nc")}_l_read_name(){return 255&this.get("_bin_mq_nl")}_seq_bytes(){return this.get("seq_length")+1>>1}getReadBases(){return this.seq()}seq(){const{byteArray:t,start:e}=this.bytes,r=e+36+this.get("_l_read_name")+4*this.get("_n_cigar_op"),n=this.get("_seq_bytes"),s=this.get("seq_length");let i="",a=0;for(let e=0;e>4],a++,a0?(s[0]=t,s[1]=r,s[2]=e,s[3]=n):(s[2]=t,s[3]=r,s[0]=e,s[1]=n),s.join("")}return""}_bin_mq_nl(){return this.bytes.byteArray.readInt32LE(this.bytes.start+12)}_flag_nc(){return this.bytes.byteArray.readInt32LE(this.bytes.start+16)}seq_length(){return this.bytes.byteArray.readInt32LE(this.bytes.start+20)}_next_refid(){return this.bytes.byteArray.readInt32LE(this.bytes.start+24)}_next_pos(){return this.bytes.byteArray.readInt32LE(this.bytes.start+28)}template_length(){return this.bytes.byteArray.readInt32LE(this.bytes.start+32)}toJSON(){const t={};for(const e of Object.keys(this))e.startsWith("_")||"bytes"===e||(t[e]=this[e]);return t}}function P(t){const e=t.split(/\r?\n/),r=[];for(const t of e){const[e,...n]=t.split(/\t/);e&&r.push({tag:e.slice(1),data:n.map((t=>{const e=t.indexOf(":");return{tag:t.slice(0,e),value:t.slice(e+1)}}))})}return r}const T=21840194;class L{read(){throw new Error("never called")}stat(){throw new Error("never called")}readFile(){throw new Error("never called")}close(){throw new Error("never called")}}class C{constructor({bamFilehandle:t,bamPath:e,bamUrl:r,baiPath:n,baiFilehandle:s,baiUrl:i,csiPath:a,csiFilehandle:o,csiUrl:h,htsget:l,yieldThreadTime:c=100,renameRefSeqs:d=t=>t}){if(this.htsget=!1,this.featureCache=new _.A({cache:new(v())({maxSize:50}),fill:async(t,e)=>{const{chunk:r,opts:n}=t,{data:s,cpositions:i,dpositions:a}=await this._readChunk({chunk:r,opts:{...n,signal:e}});return this.readBamFeatures(s,i,a,r)}}),this.renameRefSeq=d,t)this.bam=t;else if(e)this.bam=new w.EY(e);else if(r)this.bam=new w.Tx(r);else{if(!l)throw new Error("unable to initialize bam");this.htsget=!0,this.bam=new L}if(o)this.index=new x({filehandle:o});else if(a)this.index=new x({filehandle:new w.EY(a)});else if(h)this.index=new x({filehandle:new w.Tx(h)});else if(s)this.index=new g({filehandle:s});else if(n)this.index=new g({filehandle:new w.EY(n)});else if(i)this.index=new g({filehandle:new w.Tx(i)});else if(e)this.index=new g({filehandle:new w.EY(`${e}.bai`)});else if(r)this.index=new g({filehandle:new w.Tx(`${r}.bai`)});else{if(!l)throw new Error("unable to infer index format");this.htsget=!0}this.yieldThreadTime=c}async getHeaderPre(t){const e=function(t={}){return"aborted"in t?{signal:t}:t}(t);if(!this.index)return;const r=await this.index.parse(e),n=r.firstDataLine?r.firstDataLine.blockPosition+65535:void 0;let s;if(n){const t=n+65536,r=await this.bam.read(b.hp.alloc(t),0,t,0,e);if(!r.bytesRead)throw new Error("Error reading header");s=r.buffer.subarray(0,Math.min(r.bytesRead,n))}else s=await this.bam.readFile(e);const i=await(0,p.unzip)(s);if(i.readInt32LE(0)!==T)throw new Error("Not a BAM file");const a=i.readInt32LE(4);this.header=i.toString("utf8",8,8+a);const{chrToIndex:o,indexToChr:h}=await this._readRefSeqs(a+8,65535,e);return this.chrToIndex=o,this.indexToChr=h,P(this.header)}getHeader(t){return this.headerP||(this.headerP=this.getHeaderPre(t).catch((t=>{throw this.headerP=void 0,t}))),this.headerP}async getHeaderText(t={}){return await this.getHeader(t),this.header}async _readRefSeqs(t,e,r){if(t>e)return this._readRefSeqs(t,2*e,r);const n=e+65536,{bytesRead:s,buffer:i}=await this.bam.read(b.hp.alloc(n),0,e,0,r);if(!s)throw new Error("Error reading refseqs from header");const a=await(0,p.unzip)(i.subarray(0,Math.min(s,e))),o=a.readInt32LE(t);let h=t+4;const l={},c=[];for(let n=0;na.length)return console.warn(`BAM header is very big. Re-fetching ${e} bytes.`),this._readRefSeqs(t,2*e,r)}return{chrToIndex:l,indexToChr:c}}async getRecordsForRange(t,e,r,n){return async function(t){let e=[];for await(const r of t)e=e.concat(r);return e}(this.streamRecordsForRange(t,e,r,n))}async*streamRecordsForRange(t,e,r,n){var s;await this.getHeader(n);const i=null===(s=this.chrToIndex)||void 0===s?void 0:s[t];if(void 0!==i&&this.index){const t=await this.index.blocksForRange(i,e-1,r,n);yield*this._fetchChunkFeatures(t,i,e,r,n)}else yield[]}async*_fetchChunkFeatures(t,e,r,n,s={}){const{viewAsPairs:i}=s,a=[];let o=!1;for(const i of t){const t=await this.featureCache.get(i.toString(),{chunk:i,opts:s},s.signal),h=[];for(const s of t)if(s.seq_id()===e){if(s.get("start")>=n){o=!0;break}s.get("end")>=r&&h.push(s)}if(a.push(h),yield h,o)break}(function(t){if(t&&t.aborted){if("undefined"==typeof DOMException){const t=new Error("aborted");throw t.code="ERR_ABORTED",t}throw new DOMException("aborted","AbortError")}})(s.signal),i&&(yield this.fetchPairs(e,a,s))}async fetchPairs(t,e,r){const{pairAcrossChr:n,maxInsertSize:s=2e5}=r,i={},a={};e.map((t=>{const e={};for(const r of t){const t=r.name(),n=r.id();e[t]||(e[t]=0),e[t]++,a[n]=1}for(const[t,r]of Object.entries(e))1===r&&(i[t]=!0)}));const o=[];e.map((e=>{for(const a of e){const e=a.name(),h=a.get("start"),l=a._next_pos(),c=a._next_refid();this.index&&i[e]&&(n||c===t&&Math.abs(h-l){const{data:e,cpositions:n,dpositions:s,chunk:o}=await this._readChunk({chunk:t,opts:r}),h=[];for(const t of await this.readBamFeatures(e,n,s,o))i[t.get("name")]&&!a[t.id()]&&h.push(t);return h})))).flat()}async _readRegion(t,e,r={}){const{bytesRead:n,buffer:s}=await this.bam.read(b.hp.alloc(e),0,e,t,r);return s.subarray(0,Math.min(n,e))}async _readChunk({chunk:t,opts:e}){const r=await this._readRegion(t.minv.blockPosition,t.fetchedSize(),e),{buffer:n,cpositions:s,dpositions:i}=await(0,p.i2)(r,t);return{data:n,cpositions:s,dpositions:i,chunk:t}}async readBamFeatures(t,e,r,n){let s=0;const i=[];let a=0,o=+Date.now();for(;s+4=r[a++];);a--}if(l0?256*e[a]+(s-r[a])+n.minv.dataPosition+1:m.A.signed(t.slice(s,l))});i.push(c),this.yieldThreadTime&&+Date.now()-o>this.yieldThreadTime&&(await h(1),o=+Date.now())}s=l+1}return i}async hasRefSeq(t){var e,r;const n=null===(e=this.chrToIndex)||void 0===e?void 0:e[t];return void 0!==n&&(null===(r=this.index)||void 0===r?void 0:r.hasRefSeq(n))}async lineCount(t){var e;const r=null===(e=this.chrToIndex)||void 0===e?void 0:e[t];return void 0!==r&&this.index?this.index.lineCount(r):0}async indexCov(t,e,r){var n;if(!this.index)return[];await this.index.parse();const s=null===(n=this.chrToIndex)||void 0===n?void 0:n[t];return void 0===s?[]:this.index.indexCov(s,e,r)}async blocksForRange(t,e,r,n){var s;if(!this.index)return[];await this.index.parse();const i=null===(s=this.chrToIndex)||void 0===s?void 0:s[t];return void 0===i?[]:this.index.blocksForRange(i,e,r,n)}}async function R(t,e){const r=await Promise.all(t.map((async t=>{const{url:r,headers:n}=t;if(r.startsWith("data:"))return b.hp.from(r.split(",")[1],"base64");{const{referer:t,...s}=n,i=await fetch(r,{...e,headers:{...null==e?void 0:e.headers,...s}});if(!i.ok)throw new Error(`HTTP ${i.status} fetching ${r}: ${await i.text()}`);return b.hp.from(await i.arrayBuffer())}})));return b.hp.concat(await Promise.all(r.map((t=>(0,p.unzip)(t)))))}class A extends C{constructor(t){super({htsget:!0}),this.baseUrl=t.baseUrl,this.trackId=t.trackId}async*streamRecordsForRange(t,e,r,n){var s;const i=`${this.baseUrl}/${this.trackId}?referenceName=${t}&start=${e}&end=${r}&format=BAM`,a=null===(s=this.chrToIndex)||void 0===s?void 0:s[t];if(void 0===a)yield[];else{const s=await fetch(i,{...n});if(!s.ok)throw new Error(`HTTP ${s.status} fetching ${i}: ${await s.text()}`);const o=await s.json(),h=await R(o.htsget.urls.slice(1),n);yield*this._fetchChunkFeatures([{buffer:h,_fetchedSize:void 0,bin:0,compareTo:()=>0,toUniqueString:()=>`${t}_${e}_${r}`,fetchedSize:()=>0,minv:{dataPosition:0,blockPosition:0,compareTo:()=>0},maxv:{dataPosition:Number.MAX_SAFE_INTEGER,blockPosition:0,compareTo:()=>0},toString:()=>`${t}_${e}_${r}`}],a,e,r,n)}}async _readChunk({chunk:t}){if(!t.buffer)throw new Error("expected chunk.buffer in htsget");return{data:t.buffer,cpositions:[],dpositions:[],chunk:t}}async getHeader(t={}){const e=`${this.baseUrl}/${this.trackId}?referenceName=na&class=header`,r=await fetch(e,t);if(!r.ok)throw new Error(`HTTP ${r.status} fetching ${e}: ${await r.text()}`);const n=await r.json(),s=await R(n.htsget.urls,t);if(s.readInt32LE(0)!==T)throw new Error("Not a BAM file");const i=s.readInt32LE(4),a=P(s.toString("utf8",8,8+i)),o=[],h={},l=a.filter((t=>"SQ"===t.tag));for(const[t,e]of l.entries()){let r="",n=0;for(const t of e.data)"SN"===t.tag?r=t.value:"LN"===t.tag&&(n=+t.value);h[r]=t,o[t]={refName:r,length:n}}return this.chrToIndex=h,this.indexToChr=o,a}}},7706:(t,e,r)=>{r.d(e,{sG:()=>d,unzip:()=>a,i2:()=>o});var n=r(35451),s=r(45834),i=r(57864);async function a(t){try{let e,r=0,s=0;const a=[];let o,h=0;do{const n=t.subarray(r);if(o=new i.Inflate,({strm:e}=o),o.push(n,i.Z_SYNC_FLUSH),o.err)throw new Error(o.msg);r+=e.next_in,a[s]=o.result,h+=a[s].length,s+=1}while(e.avail_in);const l=new Uint8Array(h);for(let t=0,e=0;t=a.blockPosition){l[u]=l[u].subarray(0,a.blockPosition===s.blockPosition?a.dataPosition-s.dataPosition+1:a.dataPosition+1),c.push(o),d.push(h),f+=l[u].length;break}f+=l[u].length,u++}while(r.avail_in);const g=new Uint8Array(f);for(let t=0,e=0;tNumber.MAX_SAFE_INTEGER)throw new TypeError("integer overflow");t=n.hp.allocUnsafe(s),await this.filehandle.read(t,0,s,8);for(let n=0;n{const n=t[1],s=r?r[1]:1/0;return n<=e&&s>e?0:n0?o=h-1:l<0&&(a=h+1),h=Math.ceil((o-a)/2)+a,l=i(n[h],n[h+1]);s.push(n[h]);let c=h+1;for(;c=r));c+=1);return 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NullSignal {}\n\n/**\n * aggregates a number of abort signals, will only fire the aggregated\n * abort if all of the input signals have been aborted\n */\nexport default class AggregateAbortController {\n signals = new Set()\n abortController = new AbortController()\n\n /**\n * @param {AbortSignal} [signal] optional AbortSignal to add. if falsy,\n * will be treated as a null-signal, and this abortcontroller will no\n * longer be abortable.\n */\n //@ts-ignore\n addSignal(signal: AbortSignal = new NullSignal()): void {\n if (this.signal.aborted) {\n throw new Error('cannot add a signal, already aborted!')\n }\n\n // note that a NullSignal will never fire, so if we\n // have one this thing will never actually abort\n this.signals.add(signal)\n if (signal.aborted) {\n // handle the abort immediately if it is already aborted\n // for some reason\n this.handleAborted(signal)\n } else if (typeof signal.addEventListener === 'function') {\n signal.addEventListener('abort', () => {\n this.handleAborted(signal)\n })\n }\n }\n\n handleAborted(signal: AbortSignal): void {\n this.signals.delete(signal)\n if (this.signals.size === 0) {\n this.abortController.abort()\n }\n }\n\n get signal(): AbortSignal {\n return this.abortController.signal\n }\n\n abort(): void {\n this.abortController.abort()\n }\n}\n","export default class AggregateStatusReporter {\n callbacks = new Set()\n currentMessage: unknown\n\n addCallback(callback: Function = () => {}): void {\n this.callbacks.add(callback)\n callback(this.currentMessage)\n }\n\n callback(message: unknown) {\n this.currentMessage = message\n for (const elt of this.callbacks) {\n elt(message)\n }\n }\n}\n","import AggregateAbortController from './AggregateAbortController'\nimport AggregateStatusReporter from './AggregateStatusReporter'\n\ninterface Cache {\n delete: (key: string) => void\n keys: () => Iterator\n get: (key: string) => U | undefined\n set: (key: string, value: U) => void\n has: (key: string) => boolean\n}\ntype FillCallback = (\n data: T,\n signal?: AbortSignal,\n statusCallback?: Function,\n) => Promise\n\ninterface Entry {\n aborter: AggregateAbortController\n settled: boolean\n readonly aborted: boolean\n statusReporter: AggregateStatusReporter\n promise: Promise\n}\nexport default class AbortablePromiseCache {\n /**\n * @param {object} args constructor args\n * @param {Function} args.fill fill callback, will be called with sig `fill(data, signal)`\n * @param {object} args.cache backing store to use, must implement `get(key)`, `set(key, val)`,\n * `delete(key)`, and `keys() -> iterator`\n */\n\n private cache: Cache>\n private fillCallback: FillCallback\n\n constructor({\n fill,\n cache,\n }: {\n fill: FillCallback\n cache: Cache>\n }) {\n if (typeof fill !== 'function') {\n throw new TypeError('must pass a fill function')\n }\n if (typeof cache !== 'object') {\n throw new TypeError('must pass a cache object')\n }\n if (\n typeof cache.get !== 'function' ||\n typeof cache.set !== 'function' ||\n typeof cache.delete !== 'function'\n ) {\n throw new TypeError(\n 'cache must implement get(key), set(key, val), and and delete(key)',\n )\n }\n\n this.cache = cache\n this.fillCallback = fill\n }\n\n static isAbortException(exception: Error) {\n return (\n // DOMException\n exception.name === 'AbortError' ||\n // standard-ish non-DOM abort exception\n //@ts-ignore\n exception.code === 'ERR_ABORTED' ||\n // stringified DOMException\n exception.message === 'AbortError: aborted' ||\n // stringified standard-ish exception\n exception.message === 'Error: aborted'\n )\n }\n\n evict(key: string, entry: Entry) {\n if (this.cache.get(key) === entry) {\n this.cache.delete(key)\n }\n }\n\n fill(key: string, data: T, signal?: AbortSignal, statusCallback?: Function) {\n const aborter = new AggregateAbortController()\n const statusReporter = new AggregateStatusReporter()\n statusReporter.addCallback(statusCallback)\n const newEntry: Entry = {\n aborter: aborter,\n promise: this.fillCallback(data, aborter.signal, (message: unknown) => {\n statusReporter.callback(message)\n }),\n settled: false,\n statusReporter,\n get aborted() {\n return this.aborter.signal.aborted\n },\n }\n newEntry.aborter.addSignal(signal)\n\n // remove the fill from the cache when its abortcontroller fires, if still in there\n newEntry.aborter.signal.addEventListener('abort', () => {\n if (!newEntry.settled) {\n this.evict(key, newEntry)\n }\n })\n\n // chain off the cached promise to record when it settles\n newEntry.promise\n .then(\n () => {\n newEntry.settled = true\n },\n () => {\n newEntry.settled = true\n\n // if the fill throws an error (including abort) and is still in the cache, remove it\n this.evict(key, newEntry)\n },\n )\n .catch(error => {\n // this will only be reached if there is some kind of\n // bad bug in this library\n console.error(error)\n throw error\n })\n\n this.cache.set(key, newEntry)\n }\n\n static checkSinglePromise(promise: Promise, signal?: AbortSignal) {\n // check just this signal for having been aborted, and abort the\n // promise if it was, regardless of what happened with the cached\n // response\n function checkForSingleAbort() {\n if (signal?.aborted) {\n throw Object.assign(new Error('aborted'), { code: 'ERR_ABORTED' })\n }\n }\n\n return promise.then(\n result => {\n checkForSingleAbort()\n return result\n },\n error => {\n checkForSingleAbort()\n throw error\n },\n )\n }\n\n has(key: string): boolean {\n return this.cache.has(key)\n }\n\n /**\n * Callback for getting status of the pending async\n *\n * @callback statusCallback\n * @param {any} status, current status string or message object\n */\n\n /**\n * @param {any} key cache key to use for this request\n * @param {any} data data passed as the first argument to the fill callback\n * @param {AbortSignal} [signal] optional AbortSignal object that aborts the request\n * @param {statusCallback} a callback to get the current status of a pending async operation\n */\n get(\n key: string,\n data: T,\n signal?: AbortSignal,\n statusCallback?: Function,\n ): Promise {\n if (!signal && data instanceof AbortSignal) {\n throw new TypeError(\n 'second get argument appears to be an AbortSignal, perhaps you meant to pass `null` for the fill data?',\n )\n }\n const cacheEntry = this.cache.get(key)\n\n if (cacheEntry) {\n if (cacheEntry.aborted && !cacheEntry.settled) {\n // if it's aborted but has not realized it yet, evict it and redispatch\n this.evict(key, cacheEntry)\n return this.get(key, data, signal, statusCallback)\n }\n\n if (cacheEntry.settled) {\n // too late to abort, just return it\n return cacheEntry.promise\n }\n\n // request is in-flight, add this signal to its list of signals,\n // or if there is no signal, the aborter will become non-abortable\n cacheEntry.aborter.addSignal(signal)\n cacheEntry.statusReporter.addCallback(statusCallback)\n\n return AbortablePromiseCache.checkSinglePromise(\n cacheEntry.promise,\n signal,\n )\n }\n\n // if we got here, it is not in the cache. fill.\n this.fill(key, data, signal, statusCallback)\n return AbortablePromiseCache.checkSinglePromise(\n //see https://www.typescriptlang.org/docs/handbook/2/everyday-types.html#non-null-assertion-operator-postfix-\n\n this.cache.get(key)!.promise,\n signal,\n )\n }\n\n /**\n * delete the given entry from the cache. if it exists and its fill request has\n * not yet settled, the fill will be signaled to abort.\n *\n * @param {any} key\n */\n delete(key: string) {\n const cachedEntry = this.cache.get(key)\n if (cachedEntry) {\n if (!cachedEntry.settled) {\n cachedEntry.aborter.abort()\n }\n this.cache.delete(key)\n }\n }\n\n /**\n * Clear all requests from the cache. Aborts any that have not settled.\n * @returns {number} count of entries deleted\n */\n clear() {\n // iterate without needing regenerator-runtime\n const keyIter = this.cache.keys()\n let deleteCount = 0\n for (let result = keyIter.next(); !result.done; result = keyIter.next()) {\n this.delete(result.value)\n deleteCount += 1\n }\n return deleteCount\n }\n}\n","export default class VirtualOffset {\n public blockPosition: number\n public dataPosition: number\n constructor(blockPosition: number, dataPosition: number) {\n this.blockPosition = blockPosition // < offset of the compressed data block\n this.dataPosition = dataPosition // < offset into the uncompressed data\n }\n\n toString() {\n return `${this.blockPosition}:${this.dataPosition}`\n }\n\n compareTo(b: VirtualOffset) {\n return (\n this.blockPosition - b.blockPosition || this.dataPosition - b.dataPosition\n )\n }\n\n static min(...args: VirtualOffset[]) {\n let min\n let i = 0\n for (; !min; i += 1) {\n min = args[i]\n }\n for (; i < args.length; i += 1) {\n if (min.compareTo(args[i]) > 0) {\n min = args[i]\n }\n }\n return min\n }\n}\nexport function fromBytes(bytes: Buffer, offset = 0, bigendian = false) {\n if (bigendian) {\n throw new Error('big-endian virtual file offsets not implemented')\n }\n\n return new VirtualOffset(\n bytes[offset + 7] * 0x10000000000 +\n bytes[offset + 6] * 0x100000000 +\n bytes[offset + 5] * 0x1000000 +\n bytes[offset + 4] * 0x10000 +\n bytes[offset + 3] * 0x100 +\n bytes[offset + 2],\n (bytes[offset + 1] << 8) | bytes[offset],\n )\n}\n","import VirtualOffset from './virtualOffset'\n\n// little class representing a chunk in the index\nexport default class Chunk {\n public buffer?: Buffer\n\n constructor(\n public minv: VirtualOffset,\n public maxv: VirtualOffset,\n public bin: number,\n public _fetchedSize?: number,\n ) {}\n\n toUniqueString() {\n return `${this.minv.toString()}..${this.maxv.toString()} (bin ${\n this.bin\n }, fetchedSize ${this.fetchedSize()})`\n }\n\n toString() {\n return this.toUniqueString()\n }\n\n compareTo(b: Chunk) {\n return (\n this.minv.compareTo(b.minv) ||\n this.maxv.compareTo(b.maxv) ||\n this.bin - b.bin\n )\n }\n\n fetchedSize() {\n if (this._fetchedSize !== undefined) {\n return this._fetchedSize\n }\n return this.maxv.blockPosition + (1 << 16) - this.minv.blockPosition\n }\n}\n","import Long from 'long'\nimport Chunk from './chunk'\nimport VirtualOffset from './virtualOffset'\n\nexport function timeout(ms: number) {\n return new Promise(resolve => setTimeout(resolve, ms))\n}\n\nexport function longToNumber(long: Long) {\n if (\n long.greaterThan(Number.MAX_SAFE_INTEGER) ||\n long.lessThan(Number.MIN_SAFE_INTEGER)\n ) {\n throw new Error('integer overflow')\n }\n return long.toNumber()\n}\n\n/**\n * Properly check if the given AbortSignal is aborted.\n * Per the standard, if the signal reads as aborted,\n * this function throws either a DOMException AbortError, or a regular error\n * with a `code` attribute set to `ERR_ABORTED`.\n *\n * For convenience, passing `undefined` is a no-op\n *\n * @param {AbortSignal} [signal] an AbortSignal, or anything with an `aborted` attribute\n * @returns nothing\n */\nexport function checkAbortSignal(signal?: AbortSignal) {\n if (!signal) {\n return\n }\n\n if (signal.aborted) {\n // console.log('bam aborted!')\n if (typeof DOMException === 'undefined') {\n const e = new Error('aborted')\n //@ts-ignore\n e.code = 'ERR_ABORTED'\n throw e\n } else {\n throw new DOMException('aborted', 'AbortError')\n }\n }\n}\n\n/**\n * Skips to the next tick, then runs `checkAbortSignal`.\n * Await this to inside an otherwise synchronous loop to\n * provide a place to break when an abort signal is received.\n * @param {AbortSignal} signal\n */\nexport async function abortBreakPoint(signal?: AbortSignal) {\n await Promise.resolve()\n checkAbortSignal(signal)\n}\n\nexport function canMergeBlocks(chunk1: Chunk, chunk2: Chunk) {\n return (\n chunk2.minv.blockPosition - chunk1.maxv.blockPosition < 65000 &&\n chunk2.maxv.blockPosition - chunk1.minv.blockPosition < 5000000\n )\n}\n\nexport interface BamOpts {\n viewAsPairs?: boolean\n pairAcrossChr?: boolean\n maxInsertSize?: number\n signal?: AbortSignal\n}\n\nexport interface BaseOpts {\n signal?: AbortSignal\n}\n\nexport function makeOpts(obj: AbortSignal | BaseOpts = {}): BaseOpts {\n return 'aborted' in obj ? ({ signal: obj } as BaseOpts) : obj\n}\n\nexport function optimizeChunks(chunks: Chunk[], lowest?: VirtualOffset) {\n const mergedChunks: Chunk[] = []\n let lastChunk: Chunk | undefined\n\n if (chunks.length === 0) {\n return chunks\n }\n\n chunks.sort((c0, c1) => {\n const dif = c0.minv.blockPosition - c1.minv.blockPosition\n return dif === 0 ? c0.minv.dataPosition - c1.minv.dataPosition : dif\n })\n\n for (const chunk of chunks) {\n if (!lowest || chunk.maxv.compareTo(lowest) > 0) {\n if (lastChunk === undefined) {\n mergedChunks.push(chunk)\n lastChunk = chunk\n } else {\n if (canMergeBlocks(lastChunk, chunk)) {\n if (chunk.maxv.compareTo(lastChunk.maxv) > 0) {\n lastChunk.maxv = chunk.maxv\n }\n } else {\n mergedChunks.push(chunk)\n lastChunk = chunk\n }\n }\n }\n }\n\n return mergedChunks\n}\n\nexport function parsePseudoBin(bytes: Buffer, offset: number) {\n const lineCount = longToNumber(\n Long.fromBytesLE(\n Array.prototype.slice.call(bytes, offset, offset + 8),\n true,\n ),\n )\n return { lineCount }\n}\n\nexport function findFirstData(\n firstDataLine: VirtualOffset | undefined,\n virtualOffset: VirtualOffset,\n) {\n return firstDataLine\n ? firstDataLine.compareTo(virtualOffset) > 0\n ? virtualOffset\n : firstDataLine\n : virtualOffset\n}\n\nexport function parseNameBytes(\n namesBytes: Buffer,\n renameRefSeq: (arg: string) => string = s => s,\n) {\n let currRefId = 0\n let currNameStart = 0\n const refIdToName = []\n const refNameToId: Record = {}\n for (let i = 0; i < namesBytes.length; i += 1) {\n if (!namesBytes[i]) {\n if (currNameStart < i) {\n let refName = namesBytes.toString('utf8', currNameStart, i)\n refName = renameRefSeq(refName)\n refIdToName[currRefId] = refName\n refNameToId[refName] = currRefId\n }\n currNameStart = i + 1\n currRefId += 1\n }\n }\n return { refNameToId, refIdToName }\n}\n","import { GenericFilehandle } from 'generic-filehandle'\nimport Chunk from './chunk'\nimport { BaseOpts } from './util'\n\nexport default abstract class IndexFile {\n public filehandle: GenericFilehandle\n public renameRefSeq: (s: string) => string\n\n /**\n * @param {filehandle} filehandle\n * @param {function} [renameRefSeqs]\n */\n constructor({\n filehandle,\n renameRefSeq = (n: string) => n,\n }: {\n filehandle: GenericFilehandle\n renameRefSeq?: (a: string) => string\n }) {\n this.filehandle = filehandle\n this.renameRefSeq = renameRefSeq\n }\n public abstract lineCount(refId: number): Promise\n public abstract indexCov(\n refId: number,\n start?: number,\n end?: number,\n ): Promise<{ start: number; end: number; score: number }[]>\n\n public abstract blocksForRange(\n chrId: number,\n start: number,\n end: number,\n opts?: BaseOpts,\n ): Promise\n}\n","import VirtualOffset, { fromBytes } from './virtualOffset'\nimport Chunk from './chunk'\n\nimport { optimizeChunks, parsePseudoBin, findFirstData, BaseOpts } from './util'\nimport IndexFile from './indexFile'\n\nconst BAI_MAGIC = 21578050 // BAI\\1\n\nfunction roundDown(n: number, multiple: number) {\n return n - (n % multiple)\n}\nfunction roundUp(n: number, multiple: number) {\n return n - (n % multiple) + multiple\n}\n\nfunction reg2bins(beg: number, end: number) {\n end -= 1\n return [\n [0, 0],\n [1 + (beg >> 26), 1 + (end >> 26)],\n [9 + (beg >> 23), 9 + (end >> 23)],\n [73 + (beg >> 20), 73 + (end >> 20)],\n [585 + (beg >> 17), 585 + (end >> 17)],\n [4681 + (beg >> 14), 4681 + (end >> 14)],\n ]\n}\n\nexport default class BAI extends IndexFile {\n public setupP?: ReturnType\n\n async lineCount(refId: number, opts?: BaseOpts) {\n const indexData = await this.parse(opts)\n return indexData.indices[refId]?.stats?.lineCount || 0\n }\n\n // fetch and parse the index\n async _parse(opts?: BaseOpts) {\n const bytes = (await this.filehandle.readFile(opts)) as Buffer\n\n // check BAI magic numbers\n if (bytes.readUInt32LE(0) !== BAI_MAGIC) {\n throw new Error('Not a BAI file')\n }\n\n const refCount = bytes.readInt32LE(4)\n const depth = 5\n const binLimit = ((1 << ((depth + 1) * 3)) - 1) / 7\n\n // read the indexes for each reference sequence\n let curr = 8\n let firstDataLine: VirtualOffset | undefined\n\n type BinIndex = Record\n type LinearIndex = VirtualOffset[]\n const indices = new Array<{\n binIndex: BinIndex\n linearIndex: LinearIndex\n stats?: { lineCount: number }\n }>(refCount)\n for (let i = 0; i < refCount; i++) {\n // the binning index\n const binCount = bytes.readInt32LE(curr)\n let stats\n\n curr += 4\n const binIndex: Record = {}\n\n for (let j = 0; j < binCount; j += 1) {\n const bin = bytes.readUInt32LE(curr)\n curr += 4\n if (bin === binLimit + 1) {\n curr += 4\n stats = parsePseudoBin(bytes, curr + 16)\n curr += 32\n } else if (bin > binLimit + 1) {\n throw new Error('bai index contains too many bins, please use CSI')\n } else {\n const chunkCount = bytes.readInt32LE(curr)\n curr += 4\n const chunks = new Array(chunkCount)\n for (let k = 0; k < chunkCount; k++) {\n const u = fromBytes(bytes, curr)\n curr += 8\n const v = fromBytes(bytes, curr)\n curr += 8\n firstDataLine = findFirstData(firstDataLine, u)\n chunks[k] = new Chunk(u, v, bin)\n }\n binIndex[bin] = chunks\n }\n }\n\n const linearCount = bytes.readInt32LE(curr)\n curr += 4\n // as we're going through the linear index, figure out the smallest\n // virtual offset in the indexes, which tells us where the BAM header\n // ends\n const linearIndex = new Array(linearCount)\n for (let j = 0; j < linearCount; j++) {\n const offset = fromBytes(bytes, curr)\n curr += 8\n firstDataLine = findFirstData(firstDataLine, offset)\n linearIndex[j] = offset\n }\n\n indices[i] = { binIndex, linearIndex, stats }\n }\n\n return {\n bai: true,\n firstDataLine,\n maxBlockSize: 1 << 16,\n indices,\n refCount,\n }\n }\n\n async indexCov(\n seqId: number,\n start?: number,\n end?: number,\n opts: BaseOpts = {},\n ): Promise<{ start: number; end: number; score: number }[]> {\n const v = 16384\n const range = start !== undefined\n const indexData = await this.parse(opts)\n const seqIdx = indexData.indices[seqId]\n if (!seqIdx) {\n return []\n }\n const { linearIndex = [], stats } = seqIdx\n if (linearIndex.length === 0) {\n return []\n }\n const e = end === undefined ? (linearIndex.length - 1) * v : roundUp(end, v)\n const s = start === undefined ? 0 : roundDown(start, v)\n const depths = range\n ? new Array((e - s) / v)\n : new Array(linearIndex.length - 1)\n const totalSize = linearIndex[linearIndex.length - 1].blockPosition\n if (e > (linearIndex.length - 1) * v) {\n throw new Error('query outside of range of linear index')\n }\n let currentPos = linearIndex[s / v].blockPosition\n for (let i = s / v, j = 0; i < e / v; i++, j++) {\n depths[j] = {\n score: linearIndex[i + 1].blockPosition - currentPos,\n start: i * v,\n end: i * v + v,\n }\n currentPos = linearIndex[i + 1].blockPosition\n }\n return depths.map(d => ({\n ...d,\n score: (d.score * (stats?.lineCount || 0)) / totalSize,\n }))\n }\n\n async blocksForRange(\n refId: number,\n min: number,\n max: number,\n opts: BaseOpts = {},\n ) {\n if (min < 0) {\n min = 0\n }\n\n const indexData = await this.parse(opts)\n if (!indexData) {\n return []\n }\n const ba = indexData.indices[refId]\n if (!ba) {\n return []\n }\n\n // List of bin #s that overlap min, max\n const overlappingBins = reg2bins(min, max)\n const chunks: Chunk[] = []\n\n // Find chunks in overlapping bins. Leaf bins (< 4681) are not pruned\n for (const [start, end] of overlappingBins) {\n for (let bin = start; bin <= end; bin++) {\n if (ba.binIndex[bin]) {\n const binChunks = ba.binIndex[bin]\n for (const binChunk of binChunks) {\n chunks.push(binChunk)\n }\n }\n }\n }\n\n // Use the linear index to find minimum file position of chunks that could\n // contain alignments in the region\n const nintv = ba.linearIndex.length\n let lowest: VirtualOffset | undefined\n const minLin = Math.min(min >> 14, nintv - 1)\n const maxLin = Math.min(max >> 14, nintv - 1)\n for (let i = minLin; i <= maxLin; ++i) {\n const vp = ba.linearIndex[i]\n if (vp && (!lowest || vp.compareTo(lowest) < 0)) {\n lowest = vp\n }\n }\n\n return optimizeChunks(chunks, lowest)\n }\n\n async parse(opts: BaseOpts = {}) {\n if (!this.setupP) {\n this.setupP = this._parse(opts).catch(e => {\n this.setupP = undefined\n throw e\n })\n }\n return this.setupP\n }\n\n async hasRefSeq(seqId: number, opts: BaseOpts = {}) {\n const header = await this.parse(opts)\n return !!header.indices[seqId]?.binIndex\n }\n}\n","import { unzip } from '@gmod/bgzf-filehandle'\nimport VirtualOffset, { fromBytes } from './virtualOffset'\nimport Chunk from './chunk'\nimport {\n optimizeChunks,\n findFirstData,\n parsePseudoBin,\n parseNameBytes,\n BaseOpts,\n} from './util'\n\nimport IndexFile from './indexFile'\n\nconst CSI1_MAGIC = 21582659 // CSI\\1\nconst CSI2_MAGIC = 38359875 // CSI\\2\n\nfunction lshift(num: number, bits: number) {\n return num * 2 ** bits\n}\nfunction rshift(num: number, bits: number) {\n return Math.floor(num / 2 ** bits)\n}\n\nexport default class CSI extends IndexFile {\n private maxBinNumber = 0\n private depth = 0\n private minShift = 0\n\n public setupP?: ReturnType\n\n async lineCount(refId: number, opts?: BaseOpts) {\n const indexData = await this.parse(opts)\n return indexData.indices[refId]?.stats?.lineCount || 0\n }\n\n async indexCov() {\n return []\n }\n\n parseAuxData(bytes: Buffer, offset: number) {\n const formatFlags = bytes.readInt32LE(offset)\n const coordinateType =\n formatFlags & 0x10000 ? 'zero-based-half-open' : '1-based-closed'\n const format = (\n { 0: 'generic', 1: 'SAM', 2: 'VCF' } as Record\n )[formatFlags & 0xf]\n if (!format) {\n throw new Error(`invalid Tabix preset format flags ${formatFlags}`)\n }\n const columnNumbers = {\n ref: bytes.readInt32LE(offset + 4),\n start: bytes.readInt32LE(offset + 8),\n end: bytes.readInt32LE(offset + 12),\n }\n const metaValue = bytes.readInt32LE(offset + 16)\n const metaChar = metaValue ? String.fromCharCode(metaValue) : ''\n const skipLines = bytes.readInt32LE(offset + 20)\n const nameSectionLength = bytes.readInt32LE(offset + 24)\n\n return {\n columnNumbers,\n coordinateType,\n metaValue,\n metaChar,\n skipLines,\n format,\n formatFlags,\n ...parseNameBytes(\n bytes.subarray(offset + 28, offset + 28 + nameSectionLength),\n this.renameRefSeq,\n ),\n }\n }\n\n // fetch and parse the index\n async _parse(opts: { signal?: AbortSignal }) {\n const buffer = await this.filehandle.readFile(opts)\n const bytes = await unzip(buffer)\n\n let csiVersion\n // check TBI magic numbers\n if (bytes.readUInt32LE(0) === CSI1_MAGIC) {\n csiVersion = 1\n } else if (bytes.readUInt32LE(0) === CSI2_MAGIC) {\n csiVersion = 2\n } else {\n throw new Error('Not a CSI file')\n // TODO: do we need to support big-endian CSI files?\n }\n\n this.minShift = bytes.readInt32LE(4)\n this.depth = bytes.readInt32LE(8)\n this.maxBinNumber = ((1 << ((this.depth + 1) * 3)) - 1) / 7\n const auxLength = bytes.readInt32LE(12)\n const aux = auxLength >= 30 ? this.parseAuxData(bytes, 16) : undefined\n const refCount = bytes.readInt32LE(16 + auxLength)\n\n type BinIndex = Record\n\n // read the indexes for each reference sequence\n let curr = 16 + auxLength + 4\n let firstDataLine: VirtualOffset | undefined\n const indices = new Array<{\n binIndex: BinIndex\n stats?: { lineCount: number }\n }>(refCount)\n for (let i = 0; i < refCount; i++) {\n // the binning index\n const binCount = bytes.readInt32LE(curr)\n curr += 4\n const binIndex: Record = {}\n let stats // < provided by parsing a pseudo-bin, if present\n for (let j = 0; j < binCount; j++) {\n const bin = bytes.readUInt32LE(curr)\n curr += 4\n if (bin > this.maxBinNumber) {\n stats = parsePseudoBin(bytes, curr + 28)\n curr += 28 + 16\n } else {\n firstDataLine = findFirstData(firstDataLine, fromBytes(bytes, curr))\n curr += 8\n const chunkCount = bytes.readInt32LE(curr)\n curr += 4\n const chunks = new Array(chunkCount)\n for (let k = 0; k < chunkCount; k += 1) {\n const u = fromBytes(bytes, curr)\n curr += 8\n const v = fromBytes(bytes, curr)\n curr += 8\n firstDataLine = findFirstData(firstDataLine, u)\n chunks[k] = new Chunk(u, v, bin)\n }\n binIndex[bin] = chunks\n }\n }\n\n indices[i] = { binIndex, stats }\n }\n\n return {\n csiVersion,\n firstDataLine,\n indices,\n refCount,\n csi: true,\n maxBlockSize: 1 << 16,\n ...aux,\n }\n }\n\n async blocksForRange(\n refId: number,\n min: number,\n max: number,\n opts: BaseOpts = {},\n ) {\n if (min < 0) {\n min = 0\n }\n\n const indexData = await this.parse(opts)\n const ba = indexData?.indices[refId]\n if (!ba) {\n return []\n }\n const overlappingBins = this.reg2bins(min, max)\n\n if (overlappingBins.length === 0) {\n return []\n }\n\n const chunks = []\n // Find chunks in overlapping bins. Leaf bins (< 4681) are not pruned\n for (const [start, end] of overlappingBins) {\n for (let bin = start; bin <= end; bin++) {\n if (ba.binIndex[bin]) {\n const binChunks = ba.binIndex[bin]\n for (const c of binChunks) {\n chunks.push(c)\n }\n }\n }\n }\n\n return optimizeChunks(chunks, new VirtualOffset(0, 0))\n }\n\n /**\n * calculate the list of bins that may overlap with region [beg,end)\n * (zero-based half-open)\n */\n reg2bins(beg: number, end: number) {\n beg -= 1 // < convert to 1-based closed\n if (beg < 1) {\n beg = 1\n }\n if (end > 2 ** 50) {\n end = 2 ** 34\n } // 17 GiB ought to be enough for anybody\n end -= 1\n let l = 0\n let t = 0\n let s = this.minShift + this.depth * 3\n const bins = []\n for (; l <= this.depth; s -= 3, t += lshift(1, l * 3), l += 1) {\n const b = t + rshift(beg, s)\n const e = t + rshift(end, s)\n if (e - b + bins.length > this.maxBinNumber) {\n throw new Error(\n `query ${beg}-${end} is too large for current binning scheme (shift ${this.minShift}, depth ${this.depth}), try a smaller query or a coarser index binning scheme`,\n )\n }\n bins.push([b, e])\n }\n return bins\n }\n\n async parse(opts: BaseOpts = {}) {\n if (!this.setupP) {\n this.setupP = this._parse(opts).catch(e => {\n this.setupP = undefined\n throw e\n })\n }\n return this.setupP\n }\n\n async hasRefSeq(seqId: number, opts: BaseOpts = {}) {\n const header = await this.parse(opts)\n return !!header.indices[seqId]?.binIndex\n }\n}\n","export default {\n // the read is paired in sequencing, no matter whether it is mapped in a pair\n BAM_FPAIRED: 1,\n // the read is mapped in a proper pair\n BAM_FPROPER_PAIR: 2,\n // the read itself is unmapped; conflictive with BAM_FPROPER_PAIR\n BAM_FUNMAP: 4,\n // the mate is unmapped\n BAM_FMUNMAP: 8,\n // the read is mapped to the reverse strand\n BAM_FREVERSE: 16,\n // the mate is mapped to the reverse strand\n BAM_FMREVERSE: 32,\n // this is read1\n BAM_FREAD1: 64,\n // this is read2\n BAM_FREAD2: 128,\n // not primary alignment\n BAM_FSECONDARY: 256,\n // QC failure\n BAM_FQCFAIL: 512,\n // optical or PCR duplicate\n BAM_FDUP: 1024,\n // supplementary alignment\n BAM_FSUPPLEMENTARY: 2048,\n}\n","import Constants from './constants'\n\nconst SEQRET_DECODER = '=ACMGRSVTWYHKDBN'.split('')\nconst CIGAR_DECODER = 'MIDNSHP=X???????'.split('')\n\n/**\n * Class of each BAM record returned by this API.\n */\nexport default class BamRecord {\n private data = {} as Record\n private bytes: { start: number; end: number; byteArray: Buffer }\n private _id: number\n private _tagOffset: number | undefined\n private _tagList: string[] = []\n private _allTagsParsed = false\n\n public flags: any\n public _refID: number\n constructor(args: any) {\n const { bytes, fileOffset } = args\n const { byteArray, start } = bytes\n this.data = { start: byteArray.readInt32LE(start + 8) }\n this.bytes = bytes\n this._id = fileOffset\n this._refID = byteArray.readInt32LE(start + 4)\n this.flags = (byteArray.readInt32LE(start + 16) & 0xffff0000) >> 16\n }\n\n get(field: string) {\n //@ts-ignore\n if (this[field]) {\n //@ts-ignore\n if (this.data[field]) {\n return this.data[field]\n }\n //@ts-ignore\n this.data[field] = this[field]()\n return this.data[field]\n }\n return this._get(field.toLowerCase())\n }\n\n end() {\n return this.get('start') + this.get('length_on_ref')\n }\n\n seq_id() {\n return this._refID\n }\n\n // same as get(), except requires lower-case arguments. used\n // internally to save lots of calls to field.toLowerCase()\n _get(field: string) {\n if (field in this.data) {\n return this.data[field]\n }\n this.data[field] = this._parseTag(field)\n return this.data[field]\n }\n\n _tags() {\n this._parseAllTags()\n\n let tags = ['seq']\n\n if (!this.isSegmentUnmapped()) {\n tags.push(\n 'start',\n 'end',\n 'strand',\n 'score',\n 'qual',\n 'MQ',\n 'CIGAR',\n 'length_on_ref',\n 'template_length',\n )\n }\n if (this.isPaired()) {\n tags.push('next_segment_position', 'pair_orientation')\n }\n tags = tags.concat(this._tagList || [])\n\n for (const k of Object.keys(this.data)) {\n if (!k.startsWith('_') && k !== 'next_seq_id') {\n tags.push(k)\n }\n }\n\n const seen: Record = {}\n return tags.filter(t => {\n if (\n (t in this.data && this.data[t] === undefined) ||\n t === 'CG' ||\n t === 'cg'\n ) {\n return false\n }\n\n const lt = t.toLowerCase()\n const s = seen[lt]\n seen[lt] = true\n return !s\n })\n }\n\n parent() {\n return\n }\n\n children() {\n return this.get('subfeatures')\n }\n\n id() {\n return this._id\n }\n\n // special parsers\n /**\n * Mapping quality score.\n */\n mq() {\n const mq = (this.get('_bin_mq_nl') & 0xff00) >> 8\n return mq === 255 ? undefined : mq\n }\n\n score() {\n return this.get('mq')\n }\n\n qual() {\n return this.qualRaw()?.join(' ')\n }\n\n qualRaw() {\n if (this.isSegmentUnmapped()) {\n return\n }\n\n const { start, byteArray } = this.bytes\n const p =\n start +\n 36 +\n this.get('_l_read_name') +\n this.get('_n_cigar_op') * 4 +\n this.get('_seq_bytes')\n const lseq = this.get('seq_length')\n return byteArray.subarray(p, p + lseq)\n }\n\n strand() {\n return this.isReverseComplemented() ? -1 : 1\n }\n\n multi_segment_next_segment_strand() {\n if (this.isMateUnmapped()) {\n return\n }\n return this.isMateReverseComplemented() ? -1 : 1\n }\n\n name() {\n return this.get('_read_name')\n }\n\n _read_name() {\n const nl = this.get('_l_read_name')\n const { byteArray, start } = this.bytes\n return byteArray.toString('ascii', start + 36, start + 36 + nl - 1)\n }\n\n /**\n * Get the value of a tag, parsing the tags as far as necessary.\n * Only called if we have not already parsed that field.\n */\n _parseTag(tagName?: string) {\n // if all of the tags have been parsed and we're still being\n // called, we already know that we have no such tag, because\n // it would already have been cached.\n if (this._allTagsParsed) {\n return\n }\n\n const { byteArray, start } = this.bytes\n let p =\n this._tagOffset ||\n start +\n 36 +\n this.get('_l_read_name') +\n this.get('_n_cigar_op') * 4 +\n this.get('_seq_bytes') +\n this.get('seq_length')\n\n const blockEnd = this.bytes.end\n let lcTag\n while (p < blockEnd && lcTag !== tagName) {\n const tag = String.fromCharCode(byteArray[p], byteArray[p + 1])\n lcTag = tag.toLowerCase()\n const type = String.fromCharCode(byteArray[p + 2])\n p += 3\n\n let value\n switch (type) {\n case 'A': {\n value = String.fromCharCode(byteArray[p])\n p += 1\n break\n }\n case 'i': {\n value = byteArray.readInt32LE(p)\n p += 4\n break\n }\n case 'I': {\n value = byteArray.readUInt32LE(p)\n p += 4\n break\n }\n case 'c': {\n value = byteArray.readInt8(p)\n p += 1\n break\n }\n case 'C': {\n value = byteArray.readUInt8(p)\n p += 1\n break\n }\n case 's': {\n value = byteArray.readInt16LE(p)\n p += 2\n break\n }\n case 'S': {\n value = byteArray.readUInt16LE(p)\n p += 2\n break\n }\n case 'f': {\n value = byteArray.readFloatLE(p)\n p += 4\n break\n }\n case 'Z':\n case 'H': {\n value = ''\n while (p <= blockEnd) {\n const cc = byteArray[p++]\n if (cc === 0) {\n break\n } else {\n value += String.fromCharCode(cc)\n }\n }\n break\n }\n case 'B': {\n value = ''\n const cc = byteArray[p++]\n const Btype = String.fromCharCode(cc)\n const limit = byteArray.readInt32LE(p)\n p += 4\n if (Btype === 'i') {\n if (tag === 'CG') {\n for (let k = 0; k < limit; k++) {\n const cigop = byteArray.readInt32LE(p)\n const lop = cigop >> 4\n const op = CIGAR_DECODER[cigop & 0xf]\n value += lop + op\n p += 4\n }\n } else {\n for (let k = 0; k < limit; k++) {\n value += byteArray.readInt32LE(p)\n if (k + 1 < limit) {\n value += ','\n }\n p += 4\n }\n }\n }\n if (Btype === 'I') {\n if (tag === 'CG') {\n for (let k = 0; k < limit; k++) {\n const cigop = byteArray.readUInt32LE(p)\n const lop = cigop >> 4\n const op = CIGAR_DECODER[cigop & 0xf]\n value += lop + op\n p += 4\n }\n } else {\n for (let k = 0; k < limit; k++) {\n value += byteArray.readUInt32LE(p)\n if (k + 1 < limit) {\n value += ','\n }\n p += 4\n }\n }\n }\n if (Btype === 's') {\n for (let k = 0; k < limit; k++) {\n value += byteArray.readInt16LE(p)\n if (k + 1 < limit) {\n value += ','\n }\n p += 2\n }\n }\n if (Btype === 'S') {\n for (let k = 0; k < limit; k++) {\n value += byteArray.readUInt16LE(p)\n if (k + 1 < limit) {\n value += ','\n }\n p += 2\n }\n }\n if (Btype === 'c') {\n for (let k = 0; k < limit; k++) {\n value += byteArray.readInt8(p)\n if (k + 1 < limit) {\n value += ','\n }\n p += 1\n }\n }\n if (Btype === 'C') {\n for (let k = 0; k < limit; k++) {\n value += byteArray.readUInt8(p)\n if (k + 1 < limit) {\n value += ','\n }\n p += 1\n }\n }\n if (Btype === 'f') {\n for (let k = 0; k < limit; k++) {\n value += byteArray.readFloatLE(p)\n if (k + 1 < limit) {\n value += ','\n }\n p += 4\n }\n }\n break\n }\n default: {\n console.warn(`Unknown BAM tag type '${type}', tags may be incomplete`)\n value = undefined\n p = blockEnd\n } // stop parsing tags\n }\n\n this._tagOffset = p\n\n this._tagList.push(tag)\n if (lcTag === tagName) {\n return value\n }\n\n this.data[lcTag] = value\n }\n this._allTagsParsed = true\n return\n }\n\n _parseAllTags() {\n this._parseTag('')\n }\n\n _parseCigar(cigar: string) {\n return (\n //@ts-ignore\n cigar\n .match(/\\d+\\D/g)\n //@ts-ignore\n .map(op => [/\\D/.exec(op)[0].toUpperCase(), Number.parseInt(op, 10)])\n )\n }\n\n /**\n * @returns {boolean} true if the read is paired, regardless of whether both\n * segments are mapped\n */\n isPaired() {\n return !!(this.flags & Constants.BAM_FPAIRED)\n }\n\n /** @returns {boolean} true if the read is paired, and both segments are mapped */\n isProperlyPaired() {\n return !!(this.flags & Constants.BAM_FPROPER_PAIR)\n }\n\n /** @returns {boolean} true if the read itself is unmapped; conflictive with isProperlyPaired */\n isSegmentUnmapped() {\n return !!(this.flags & Constants.BAM_FUNMAP)\n }\n\n /** @returns {boolean} true if the read itself is unmapped; conflictive with isProperlyPaired */\n isMateUnmapped() {\n return !!(this.flags & Constants.BAM_FMUNMAP)\n }\n\n /** @returns {boolean} true if the read is mapped to the reverse strand */\n isReverseComplemented() {\n return !!(this.flags & Constants.BAM_FREVERSE)\n }\n\n /** @returns {boolean} true if the mate is mapped to the reverse strand */\n isMateReverseComplemented() {\n return !!(this.flags & Constants.BAM_FMREVERSE)\n }\n\n /** @returns {boolean} true if this is read number 1 in a pair */\n isRead1() {\n return !!(this.flags & Constants.BAM_FREAD1)\n }\n\n /** @returns {boolean} true if this is read number 2 in a pair */\n isRead2() {\n return !!(this.flags & Constants.BAM_FREAD2)\n }\n\n /** @returns {boolean} true if this is a secondary alignment */\n isSecondary() {\n return !!(this.flags & Constants.BAM_FSECONDARY)\n }\n\n /** @returns {boolean} true if this read has failed QC checks */\n isFailedQc() {\n return !!(this.flags & Constants.BAM_FQCFAIL)\n }\n\n /** @returns {boolean} true if the read is an optical or PCR duplicate */\n isDuplicate() {\n return !!(this.flags & Constants.BAM_FDUP)\n }\n\n /** @returns {boolean} true if this is a supplementary alignment */\n isSupplementary() {\n return !!(this.flags & Constants.BAM_FSUPPLEMENTARY)\n }\n\n cigar() {\n if (this.isSegmentUnmapped()) {\n return\n }\n\n const { byteArray, start } = this.bytes\n const numCigarOps = this.get('_n_cigar_op')\n let p = start + 36 + this.get('_l_read_name')\n const seqLen = this.get('seq_length')\n let cigar = ''\n let lref = 0\n\n // check for CG tag by inspecting whether the CIGAR field\n // contains a clip that consumes entire seqLen\n let cigop = byteArray.readInt32LE(p)\n let lop = cigop >> 4\n let op = CIGAR_DECODER[cigop & 0xf]\n if (op === 'S' && lop === seqLen) {\n // if there is a CG the second CIGAR field will\n // be a N tag the represents the length on ref\n p += 4\n cigop = byteArray.readInt32LE(p)\n lop = cigop >> 4\n op = CIGAR_DECODER[cigop & 0xf]\n if (op !== 'N') {\n console.warn('CG tag with no N tag')\n }\n this.data.length_on_ref = lop\n return this.get('CG')\n } else {\n for (let c = 0; c < numCigarOps; ++c) {\n cigop = byteArray.readInt32LE(p)\n lop = cigop >> 4\n op = CIGAR_DECODER[cigop & 0xf]\n cigar += lop + op\n\n // soft clip, hard clip, and insertion don't count toward\n // the length on the reference\n if (op !== 'H' && op !== 'S' && op !== 'I') {\n lref += lop\n }\n\n p += 4\n }\n\n this.data.length_on_ref = lref\n return cigar\n }\n }\n\n length_on_ref() {\n if (this.data.length_on_ref) {\n return this.data.length_on_ref\n } else {\n this.get('cigar') // the length_on_ref is set as a side effect\n return this.data.length_on_ref\n }\n }\n\n _n_cigar_op() {\n return this.get('_flag_nc') & 0xffff\n }\n\n _l_read_name() {\n return this.get('_bin_mq_nl') & 0xff\n }\n\n /**\n * number of bytes in the sequence field\n */\n _seq_bytes() {\n return (this.get('seq_length') + 1) >> 1\n }\n\n getReadBases() {\n return this.seq()\n }\n\n seq() {\n const { byteArray, start } = this.bytes\n const p =\n start + 36 + this.get('_l_read_name') + this.get('_n_cigar_op') * 4\n const seqBytes = this.get('_seq_bytes')\n const len = this.get('seq_length')\n let buf = ''\n let i = 0\n for (let j = 0; j < seqBytes; ++j) {\n const sb = byteArray[p + j]\n buf += SEQRET_DECODER[(sb & 0xf0) >> 4]\n i++\n if (i < len) {\n buf += SEQRET_DECODER[sb & 0x0f]\n i++\n }\n }\n return buf\n }\n\n // adapted from igv.js\n getPairOrientation() {\n if (\n !this.isSegmentUnmapped() &&\n !this.isMateUnmapped() &&\n this._refID === this._next_refid()\n ) {\n const s1 = this.isReverseComplemented() ? 'R' : 'F'\n const s2 = this.isMateReverseComplemented() ? 'R' : 'F'\n let o1 = ' '\n let o2 = ' '\n if (this.isRead1()) {\n o1 = '1'\n o2 = '2'\n } else if (this.isRead2()) {\n o1 = '2'\n o2 = '1'\n }\n\n const tmp = []\n const isize = this.template_length()\n if (isize > 0) {\n tmp[0] = s1\n tmp[1] = o1\n tmp[2] = s2\n tmp[3] = o2\n } else {\n tmp[2] = s1\n tmp[3] = o1\n tmp[0] = s2\n tmp[1] = o2\n }\n return tmp.join('')\n }\n return ''\n }\n\n _bin_mq_nl() {\n return this.bytes.byteArray.readInt32LE(this.bytes.start + 12)\n }\n\n _flag_nc() {\n return this.bytes.byteArray.readInt32LE(this.bytes.start + 16)\n }\n\n seq_length() {\n return this.bytes.byteArray.readInt32LE(this.bytes.start + 20)\n }\n\n _next_refid() {\n return this.bytes.byteArray.readInt32LE(this.bytes.start + 24)\n }\n\n _next_pos() {\n return this.bytes.byteArray.readInt32LE(this.bytes.start + 28)\n }\n\n template_length() {\n return this.bytes.byteArray.readInt32LE(this.bytes.start + 32)\n }\n\n toJSON() {\n const data: Record = {}\n for (const k of Object.keys(this)) {\n if (k.startsWith('_') || k === 'bytes') {\n continue\n }\n //@ts-ignore\n data[k] = this[k]\n }\n\n return data\n }\n}\n","export function parseHeaderText(text: string) {\n const lines = text.split(/\\r?\\n/)\n const data: { tag: string; data: { tag: string; value: string }[] }[] = []\n for (const line of lines) {\n const [tag, ...fields] = line.split(/\\t/)\n if (tag) {\n data.push({\n tag: tag.slice(1),\n data: fields.map(f => {\n const r = f.indexOf(':')\n const fieldTag = f.slice(0, r)\n const value = f.slice(r + 1)\n return { tag: fieldTag, value }\n }),\n })\n }\n }\n return data\n}\n","import { Buffer } from 'buffer'\nimport crc32 from 'crc/crc32'\nimport { unzip, unzipChunkSlice } from '@gmod/bgzf-filehandle'\nimport { LocalFile, RemoteFile, GenericFilehandle } from 'generic-filehandle'\nimport AbortablePromiseCache from '@gmod/abortable-promise-cache'\nimport QuickLRU from 'quick-lru'\n\n// locals\nimport BAI from './bai'\nimport CSI from './csi'\nimport Chunk from './chunk'\nimport BAMFeature from './record'\nimport { parseHeaderText } from './sam'\nimport { checkAbortSignal, timeout, makeOpts, BamOpts, BaseOpts } from './util'\n\nexport const BAM_MAGIC = 21840194\n\nconst blockLen = 1 << 16\n\nasync function gen2array(gen: AsyncIterable): Promise {\n let out: T[] = []\n for await (const x of gen) {\n out = out.concat(x)\n }\n return out\n}\n\ninterface Args {\n chunk: Chunk\n opts: BaseOpts\n}\n\nclass NullFilehandle {\n public read(): Promise {\n throw new Error('never called')\n }\n public stat(): Promise {\n throw new Error('never called')\n }\n\n public readFile(): Promise {\n throw new Error('never called')\n }\n\n public close(): Promise {\n throw new Error('never called')\n }\n}\nexport default class BamFile {\n public renameRefSeq: (a: string) => string\n public bam: GenericFilehandle\n public header?: string\n public chrToIndex?: Record\n public indexToChr?: { refName: string; length: number }[]\n public yieldThreadTime: number\n public index?: BAI | CSI\n public htsget = false\n public headerP?: ReturnType\n\n private featureCache = new AbortablePromiseCache({\n cache: new QuickLRU({\n maxSize: 50,\n }),\n fill: async (args: Args, signal) => {\n const { chunk, opts } = args\n const { data, cpositions, dpositions } = await this._readChunk({\n chunk,\n opts: { ...opts, signal },\n })\n return this.readBamFeatures(data, cpositions, dpositions, chunk)\n },\n })\n\n constructor({\n bamFilehandle,\n bamPath,\n bamUrl,\n baiPath,\n baiFilehandle,\n baiUrl,\n csiPath,\n csiFilehandle,\n csiUrl,\n htsget,\n yieldThreadTime = 100,\n renameRefSeqs = n => n,\n }: {\n bamFilehandle?: GenericFilehandle\n bamPath?: string\n bamUrl?: string\n baiPath?: string\n baiFilehandle?: GenericFilehandle\n baiUrl?: string\n csiPath?: string\n csiFilehandle?: GenericFilehandle\n csiUrl?: string\n renameRefSeqs?: (a: string) => string\n yieldThreadTime?: number\n htsget?: boolean\n }) {\n this.renameRefSeq = renameRefSeqs\n\n if (bamFilehandle) {\n this.bam = bamFilehandle\n } else if (bamPath) {\n this.bam = new LocalFile(bamPath)\n } else if (bamUrl) {\n this.bam = new RemoteFile(bamUrl)\n } else if (htsget) {\n this.htsget = true\n this.bam = new NullFilehandle()\n } else {\n throw new Error('unable to initialize bam')\n }\n if (csiFilehandle) {\n this.index = new CSI({ filehandle: csiFilehandle })\n } else if (csiPath) {\n this.index = new CSI({ filehandle: new LocalFile(csiPath) })\n } else if (csiUrl) {\n this.index = new CSI({ filehandle: new RemoteFile(csiUrl) })\n } else if (baiFilehandle) {\n this.index = new BAI({ filehandle: baiFilehandle })\n } else if (baiPath) {\n this.index = new BAI({ filehandle: new LocalFile(baiPath) })\n } else if (baiUrl) {\n this.index = new BAI({ filehandle: new RemoteFile(baiUrl) })\n } else if (bamPath) {\n this.index = new BAI({ filehandle: new LocalFile(`${bamPath}.bai`) })\n } else if (bamUrl) {\n this.index = new BAI({ filehandle: new RemoteFile(`${bamUrl}.bai`) })\n } else if (htsget) {\n this.htsget = true\n } else {\n throw new Error('unable to infer index format')\n }\n this.yieldThreadTime = yieldThreadTime\n }\n\n async getHeaderPre(origOpts?: BaseOpts) {\n const opts = makeOpts(origOpts)\n if (!this.index) {\n return\n }\n const indexData = await this.index.parse(opts)\n const ret = indexData.firstDataLine\n ? indexData.firstDataLine.blockPosition + 65535\n : undefined\n let buffer\n if (ret) {\n const s = ret + blockLen\n const res = await this.bam.read(Buffer.alloc(s), 0, s, 0, opts)\n if (!res.bytesRead) {\n throw new Error('Error reading header')\n }\n buffer = res.buffer.subarray(0, Math.min(res.bytesRead, ret))\n } else {\n buffer = await this.bam.readFile(opts)\n }\n\n const uncba = await unzip(buffer)\n\n if (uncba.readInt32LE(0) !== BAM_MAGIC) {\n throw new Error('Not a BAM file')\n }\n const headLen = uncba.readInt32LE(4)\n\n this.header = uncba.toString('utf8', 8, 8 + headLen)\n const { chrToIndex, indexToChr } = await this._readRefSeqs(\n headLen + 8,\n 65535,\n opts,\n )\n this.chrToIndex = chrToIndex\n this.indexToChr = indexToChr\n\n return parseHeaderText(this.header)\n }\n\n getHeader(opts?: BaseOpts) {\n if (!this.headerP) {\n this.headerP = this.getHeaderPre(opts).catch(e => {\n this.headerP = undefined\n throw e\n })\n }\n return this.headerP\n }\n\n async getHeaderText(opts: BaseOpts = {}) {\n await this.getHeader(opts)\n return this.header\n }\n\n // the full length of the refseq block is not given in advance so this grabs\n // a chunk and doubles it if all refseqs haven't been processed\n async _readRefSeqs(\n start: number,\n refSeqBytes: number,\n opts?: BaseOpts,\n ): Promise<{\n chrToIndex: Record\n indexToChr: { refName: string; length: number }[]\n }> {\n if (start > refSeqBytes) {\n return this._readRefSeqs(start, refSeqBytes * 2, opts)\n }\n const size = refSeqBytes + blockLen\n const { bytesRead, buffer } = await this.bam.read(\n Buffer.alloc(size),\n 0,\n refSeqBytes,\n 0,\n opts,\n )\n if (!bytesRead) {\n throw new Error('Error reading refseqs from header')\n }\n const uncba = await unzip(\n buffer.subarray(0, Math.min(bytesRead, refSeqBytes)),\n )\n const nRef = uncba.readInt32LE(start)\n let p = start + 4\n const chrToIndex: Record = {}\n const indexToChr: { refName: string; length: number }[] = []\n for (let i = 0; i < nRef; i += 1) {\n const lName = uncba.readInt32LE(p)\n const refName = this.renameRefSeq(\n uncba.toString('utf8', p + 4, p + 4 + lName - 1),\n )\n const lRef = uncba.readInt32LE(p + lName + 4)\n\n chrToIndex[refName] = i\n indexToChr.push({ refName, length: lRef })\n\n p = p + 8 + lName\n if (p > uncba.length) {\n console.warn(\n `BAM header is very big. Re-fetching ${refSeqBytes} bytes.`,\n )\n return this._readRefSeqs(start, refSeqBytes * 2, opts)\n }\n }\n return { chrToIndex, indexToChr }\n }\n\n async getRecordsForRange(\n chr: string,\n min: number,\n max: number,\n opts?: BamOpts,\n ) {\n return gen2array(this.streamRecordsForRange(chr, min, max, opts))\n }\n\n async *streamRecordsForRange(\n chr: string,\n min: number,\n max: number,\n opts?: BamOpts,\n ) {\n await this.getHeader(opts)\n const chrId = this.chrToIndex?.[chr]\n if (chrId === undefined || !this.index) {\n yield []\n } else {\n const chunks = await this.index.blocksForRange(chrId, min - 1, max, opts)\n yield* this._fetchChunkFeatures(chunks, chrId, min, max, opts)\n }\n }\n\n async *_fetchChunkFeatures(\n chunks: Chunk[],\n chrId: number,\n min: number,\n max: number,\n opts: BamOpts = {},\n ) {\n const { viewAsPairs } = opts\n const feats = [] as BAMFeature[][]\n let done = false\n\n for (const chunk of chunks) {\n const records = await this.featureCache.get(\n chunk.toString(),\n { chunk, opts },\n opts.signal,\n )\n\n const recs = [] as BAMFeature[]\n for (const feature of records) {\n if (feature.seq_id() === chrId) {\n if (feature.get('start') >= max) {\n // past end of range, can stop iterating\n done = true\n break\n } else if (feature.get('end') >= min) {\n // must be in range\n recs.push(feature)\n }\n }\n }\n feats.push(recs)\n yield recs\n if (done) {\n break\n }\n }\n\n checkAbortSignal(opts.signal)\n if (viewAsPairs) {\n yield this.fetchPairs(chrId, feats, opts)\n }\n }\n\n async fetchPairs(chrId: number, feats: BAMFeature[][], opts: BamOpts) {\n const { pairAcrossChr, maxInsertSize = 200000 } = opts\n const unmatedPairs: Record = {}\n const readIds: Record = {}\n feats.map(ret => {\n const readNames: Record = {}\n for (const element of ret) {\n const name = element.name()\n const id = element.id()\n if (!readNames[name]) {\n readNames[name] = 0\n }\n readNames[name]++\n readIds[id] = 1\n }\n for (const [k, v] of Object.entries(readNames)) {\n if (v === 1) {\n unmatedPairs[k] = true\n }\n }\n })\n\n const matePromises: Promise[] = []\n feats.map(ret => {\n for (const f of ret) {\n const name = f.name()\n const start = f.get('start')\n const pnext = f._next_pos()\n const rnext = f._next_refid()\n if (\n this.index &&\n unmatedPairs[name] &&\n (pairAcrossChr ||\n (rnext === chrId && Math.abs(start - pnext) < maxInsertSize))\n ) {\n matePromises.push(\n this.index.blocksForRange(rnext, pnext, pnext + 1, opts),\n )\n }\n }\n })\n\n // filter out duplicate chunks (the blocks are lists of chunks, blocks are\n // concatenated, then filter dup chunks)\n const map = new Map()\n const res = await Promise.all(matePromises)\n for (const m of res.flat()) {\n if (!map.has(m.toString())) {\n map.set(m.toString(), m)\n }\n }\n\n const mateFeatPromises = await Promise.all(\n [...map.values()].map(async c => {\n const { data, cpositions, dpositions, chunk } = await this._readChunk({\n chunk: c,\n opts,\n })\n const mateRecs = [] as BAMFeature[]\n for (const feature of await this.readBamFeatures(\n data,\n cpositions,\n dpositions,\n chunk,\n )) {\n if (unmatedPairs[feature.get('name')] && !readIds[feature.id()]) {\n mateRecs.push(feature)\n }\n }\n return mateRecs\n }),\n )\n return mateFeatPromises.flat()\n }\n\n async _readRegion(position: number, size: number, opts: BaseOpts = {}) {\n const { bytesRead, buffer } = await this.bam.read(\n Buffer.alloc(size),\n 0,\n size,\n position,\n opts,\n )\n\n return buffer.subarray(0, Math.min(bytesRead, size))\n }\n\n async _readChunk({ chunk, opts }: { chunk: Chunk; opts: BaseOpts }) {\n const buffer = await this._readRegion(\n chunk.minv.blockPosition,\n chunk.fetchedSize(),\n opts,\n )\n\n const {\n buffer: data,\n cpositions,\n dpositions,\n } = await unzipChunkSlice(buffer, chunk)\n return { data, cpositions, dpositions, chunk }\n }\n\n async readBamFeatures(\n ba: Buffer,\n cpositions: number[],\n dpositions: number[],\n chunk: Chunk,\n ) {\n let blockStart = 0\n const sink = [] as BAMFeature[]\n let pos = 0\n let last = +Date.now()\n\n while (blockStart + 4 < ba.length) {\n const blockSize = ba.readInt32LE(blockStart)\n const blockEnd = blockStart + 4 + blockSize - 1\n\n // increment position to the current decompressed status\n if (dpositions) {\n while (blockStart + chunk.minv.dataPosition >= dpositions[pos++]) {}\n pos--\n }\n\n // only try to read the feature if we have all the bytes for it\n if (blockEnd < ba.length) {\n const feature = new BAMFeature({\n bytes: {\n byteArray: ba,\n start: blockStart,\n end: blockEnd,\n },\n // the below results in an automatically calculated file-offset based\n // ID if the info for that is available, otherwise crc32 of the\n // features\n //\n // cpositions[pos] refers to actual file offset of a bgzip block\n // boundaries\n //\n // we multiply by (1 <<8) in order to make sure each block has a\n // \"unique\" address space so that data in that block could never\n // overlap\n //\n // then the blockStart-dpositions is an uncompressed file offset from\n // that bgzip block boundary, and since the cpositions are multiplied\n // by (1 << 8) these uncompressed offsets get a unique space\n //\n // this has an extra chunk.minv.dataPosition added on because it\n // blockStart starts at 0 instead of chunk.minv.dataPosition\n //\n // the +1 is just to avoid any possible uniqueId 0 but this does not\n // realistically happen\n fileOffset:\n cpositions.length > 0\n ? cpositions[pos] * (1 << 8) +\n (blockStart - dpositions[pos]) +\n chunk.minv.dataPosition +\n 1\n : // must be slice, not subarray for buffer polyfill on web\n crc32.signed(ba.slice(blockStart, blockEnd)),\n })\n\n sink.push(feature)\n if (this.yieldThreadTime && +Date.now() - last > this.yieldThreadTime) {\n await timeout(1)\n last = +Date.now()\n }\n }\n\n blockStart = blockEnd + 1\n }\n return sink\n }\n\n async hasRefSeq(seqName: string) {\n const seqId = this.chrToIndex?.[seqName]\n return seqId === undefined ? false : this.index?.hasRefSeq(seqId)\n }\n\n async lineCount(seqName: string) {\n const seqId = this.chrToIndex?.[seqName]\n return seqId === undefined || !this.index ? 0 : this.index.lineCount(seqId)\n }\n\n async indexCov(seqName: string, start?: number, end?: number) {\n if (!this.index) {\n return []\n }\n await this.index.parse()\n const seqId = this.chrToIndex?.[seqName]\n return seqId === undefined ? [] : this.index.indexCov(seqId, start, end)\n }\n\n async blocksForRange(\n seqName: string,\n start: number,\n end: number,\n opts?: BaseOpts,\n ) {\n if (!this.index) {\n return []\n }\n await this.index.parse()\n const seqId = this.chrToIndex?.[seqName]\n return seqId === undefined\n ? []\n : this.index.blocksForRange(seqId, start, end, opts)\n }\n}\n","import { unzip } from '@gmod/bgzf-filehandle'\nimport { Buffer } from 'buffer'\nimport { BaseOpts, BamOpts } from './util'\nimport BamFile, { BAM_MAGIC } from './bamFile'\nimport Chunk from './chunk'\nimport { parseHeaderText } from './sam'\n\ninterface HtsgetChunk {\n url: string\n headers?: Record\n}\nasync function concat(arr: HtsgetChunk[], opts?: Record) {\n const res = await Promise.all(\n arr.map(async chunk => {\n const { url, headers } = chunk\n if (url.startsWith('data:')) {\n return Buffer.from(url.split(',')[1], 'base64')\n } else {\n //remove referer header, it is not even allowed to be specified\n // @ts-expect-error\n\n const { referer, ...rest } = headers\n const res = await fetch(url, {\n ...opts,\n headers: { ...opts?.headers, ...rest },\n })\n if (!res.ok) {\n throw new Error(\n `HTTP ${res.status} fetching ${url}: ${await res.text()}`,\n )\n }\n return Buffer.from(await res.arrayBuffer())\n }\n }),\n )\n\n return Buffer.concat(await Promise.all(res.map(elt => unzip(elt))))\n}\n\nexport default class HtsgetFile extends BamFile {\n private baseUrl: string\n\n private trackId: string\n\n constructor(args: { trackId: string; baseUrl: string }) {\n super({ htsget: true })\n this.baseUrl = args.baseUrl\n this.trackId = args.trackId\n }\n\n async *streamRecordsForRange(\n chr: string,\n min: number,\n max: number,\n opts?: BamOpts,\n ) {\n const base = `${this.baseUrl}/${this.trackId}`\n const url = `${base}?referenceName=${chr}&start=${min}&end=${max}&format=BAM`\n const chrId = this.chrToIndex?.[chr]\n if (chrId === undefined) {\n yield []\n } else {\n const result = await fetch(url, { ...opts })\n if (!result.ok) {\n throw new Error(\n `HTTP ${result.status} fetching ${url}: ${await result.text()}`,\n )\n }\n const data = await result.json()\n const uncba = await concat(data.htsget.urls.slice(1), opts)\n\n yield* this._fetchChunkFeatures(\n [\n // fake stuff to pretend to be a Chunk\n {\n buffer: uncba,\n _fetchedSize: undefined,\n bin: 0,\n compareTo() {\n return 0\n },\n toUniqueString() {\n return `${chr}_${min}_${max}`\n },\n fetchedSize() {\n return 0\n },\n minv: {\n dataPosition: 0,\n blockPosition: 0,\n compareTo: () => 0,\n },\n maxv: {\n dataPosition: Number.MAX_SAFE_INTEGER,\n blockPosition: 0,\n compareTo: () => 0,\n },\n toString() {\n return `${chr}_${min}_${max}`\n },\n },\n ],\n chrId,\n min,\n max,\n opts,\n )\n }\n }\n\n async _readChunk({ chunk }: { chunk: Chunk; opts: BaseOpts }) {\n if (!chunk.buffer) {\n throw new Error('expected chunk.buffer in htsget')\n }\n return { data: chunk.buffer, cpositions: [], dpositions: [], chunk }\n }\n\n async getHeader(opts: BaseOpts = {}) {\n const url = `${this.baseUrl}/${this.trackId}?referenceName=na&class=header`\n const result = await fetch(url, opts)\n if (!result.ok) {\n throw new Error(\n `HTTP ${result.status} fetching ${url}: ${await result.text()}`,\n )\n }\n const data = await result.json()\n const uncba = await concat(data.htsget.urls, opts)\n\n if (uncba.readInt32LE(0) !== BAM_MAGIC) {\n throw new Error('Not a BAM file')\n }\n const headLen = uncba.readInt32LE(4)\n const headerText = uncba.toString('utf8', 8, 8 + headLen)\n const samHeader = parseHeaderText(headerText)\n\n // use the @SQ lines in the header to figure out the\n // mapping between ref ref ID numbers and names\n const idToName: { refName: string; length: number }[] = []\n const nameToId: Record = {}\n const sqLines = samHeader.filter(l => l.tag === 'SQ')\n for (const [refId, sqLine] of sqLines.entries()) {\n let refName = ''\n let length = 0\n for (const item of sqLine.data) {\n if (item.tag === 'SN') {\n refName = item.value\n } else if (item.tag === 'LN') {\n length = +item.value\n }\n }\n nameToId[refName] = refId\n idToName[refId] = { refName, length }\n }\n this.chrToIndex = nameToId\n this.indexToChr = idToName\n return samHeader\n }\n}\n","import { Buffer } from 'buffer'\n//@ts-ignore\nimport { Z_SYNC_FLUSH, Inflate } from 'pako'\n\ninterface VirtualOffset {\n blockPosition: number\n dataPosition: number\n}\ninterface Chunk {\n minv: VirtualOffset\n maxv: VirtualOffset\n}\n\n// browserify-zlib, which is the zlib shim used by default in webpacked code,\n// does not properly uncompress bgzf chunks that contain more than\n// one bgzf block, so export an unzip function that uses pako directly\n// if we are running in a browser.\nasync function unzip(inputData: Buffer) {\n try {\n let strm\n let pos = 0\n let i = 0\n const chunks = []\n let totalSize = 0\n let inflator\n do {\n const remainingInput = inputData.subarray(pos)\n inflator = new Inflate()\n //@ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n pos += strm.next_in\n chunks[i] = inflator.result as Uint8Array\n totalSize += chunks[i].length\n i += 1\n } while (strm.avail_in)\n\n const result = new Uint8Array(totalSize)\n for (let i = 0, offset = 0; i < chunks.length; i++) {\n result.set(chunks[i], offset)\n offset += chunks[i].length\n }\n return Buffer.from(result)\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\n// similar to pakounzip, except it does extra counting\n// to return the positions of compressed and decompressed\n// data offsets\nasync function unzipChunk(inputData: Buffer) {\n try {\n let strm\n let cpos = 0\n let dpos = 0\n const blocks = []\n const cpositions = []\n const dpositions = []\n do {\n const remainingInput = inputData.slice(cpos)\n const inflator = new Inflate()\n // @ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n const buffer = Buffer.from(inflator.result)\n blocks.push(buffer)\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n\n cpos += strm.next_in\n dpos += buffer.length\n } while (strm.avail_in)\n\n const buffer = Buffer.concat(blocks)\n return { buffer, cpositions, dpositions }\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\n// similar to unzipChunk above but slices (0,minv.dataPosition) and\n// (maxv.dataPosition,end) off\nasync function unzipChunkSlice(inputData: Buffer, chunk: Chunk) {\n try {\n let strm\n const { minv, maxv } = chunk\n let cpos = minv.blockPosition\n let dpos = minv.dataPosition\n const chunks = []\n const cpositions = []\n const dpositions = []\n\n let totalSize = 0\n let i = 0\n do {\n const remainingInput = inputData.subarray(cpos - minv.blockPosition)\n const inflator = new Inflate()\n // @ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n const buffer = inflator.result\n chunks.push(buffer as Uint8Array)\n let len = buffer.length\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n if (chunks.length === 1 && minv.dataPosition) {\n // this is the first chunk, trim it\n chunks[0] = chunks[0].subarray(minv.dataPosition)\n len = chunks[0].length\n }\n const origCpos = cpos\n cpos += strm.next_in\n dpos += len\n\n if (origCpos >= maxv.blockPosition) {\n // this is the last chunk, trim it and stop decompressing\n // note if it is the same block is minv it subtracts that already\n // trimmed part of the slice length\n\n chunks[i] = chunks[i].subarray(\n 0,\n maxv.blockPosition === minv.blockPosition\n ? maxv.dataPosition - minv.dataPosition + 1\n : maxv.dataPosition + 1,\n )\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n totalSize += chunks[i].length\n break\n }\n totalSize += chunks[i].length\n i++\n } while (strm.avail_in)\n\n const result = new Uint8Array(totalSize)\n for (let i = 0, offset = 0; i < chunks.length; i++) {\n result.set(chunks[i], offset)\n offset += chunks[i].length\n }\n const buffer = Buffer.from(result)\n\n return { buffer, cpositions, dpositions }\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\nfunction nodeUnzip() {\n throw new Error('nodeUnzip not implemented.')\n}\n\nexport { unzip, unzipChunk, unzipChunkSlice, unzip as pakoUnzip, nodeUnzip }\n","import Long from 'long'\nimport { Buffer } from 'buffer'\nimport { LocalFile, GenericFilehandle } from 'generic-filehandle'\n\n// const COMPRESSED_POSITION = 0\nconst UNCOMPRESSED_POSITION = 1\n\nexport default class GziIndex {\n filehandle: GenericFilehandle\n\n index?: any\n\n constructor({\n filehandle,\n path,\n }: {\n filehandle?: GenericFilehandle\n path?: string\n }) {\n if (filehandle) {\n this.filehandle = filehandle\n } else if (path) {\n this.filehandle = new LocalFile(path)\n } else {\n throw new TypeError('either filehandle or path must be defined')\n }\n }\n\n _readLongWithOverflow(buf: Buffer, offset = 0, unsigned = true) {\n //@ts-ignore\n const long = Long.fromBytesLE(buf.slice(offset, offset + 8), unsigned)\n if (\n long.greaterThan(Number.MAX_SAFE_INTEGER) ||\n long.lessThan(Number.MIN_SAFE_INTEGER)\n ) {\n throw new TypeError('integer overflow')\n }\n\n return long.toNumber()\n }\n\n _getIndex() {\n if (!this.index) {\n this.index = this._readIndex()\n }\n return this.index\n }\n\n async _readIndex() {\n let buf = Buffer.allocUnsafe(8)\n await this.filehandle.read(buf, 0, 8, 0)\n const numEntries = this._readLongWithOverflow(buf, 0, true)\n if (!numEntries) {\n return [[0, 0]]\n }\n\n const entries = new Array(numEntries + 1)\n entries[0] = [0, 0]\n\n // TODO rewrite this to make an index-index that stays in memory\n const bufSize = 8 * 2 * numEntries\n if (bufSize > Number.MAX_SAFE_INTEGER) {\n throw new TypeError('integer overflow')\n }\n buf = Buffer.allocUnsafe(bufSize)\n await this.filehandle.read(buf, 0, bufSize, 8)\n for (let entryNumber = 0; entryNumber < numEntries; entryNumber += 1) {\n const compressedPosition = this._readLongWithOverflow(\n buf,\n entryNumber * 16,\n )\n const uncompressedPosition = this._readLongWithOverflow(\n buf,\n entryNumber * 16 + 8,\n )\n entries[entryNumber + 1] = [compressedPosition, uncompressedPosition]\n }\n\n return entries\n }\n\n async getLastBlock() {\n const entries = await this._getIndex()\n if (!entries.length) {\n return undefined\n }\n return entries[entries.length - 1]\n }\n\n async getRelevantBlocksForRead(length: number, position: number) {\n const endPosition = position + length\n if (length === 0) {\n return []\n }\n const entries = await this._getIndex()\n const relevant = []\n\n // binary search to find the block that the\n // read starts in and extend forward from that\n const compare = (entry: any, nextEntry: any) => {\n const uncompressedPosition = entry[UNCOMPRESSED_POSITION]\n const nextUncompressedPosition = nextEntry\n ? nextEntry[UNCOMPRESSED_POSITION]\n : Infinity\n // block overlaps read start\n if (\n uncompressedPosition <= position &&\n nextUncompressedPosition > position\n ) {\n return 0\n // block is before read start\n }\n if (uncompressedPosition < position) {\n return -1\n }\n // block is after read start\n return 1\n }\n\n let lowerBound = 0\n let upperBound = entries.length - 1\n let searchPosition = Math.floor(entries.length / 2)\n\n let comparison = compare(\n entries[searchPosition],\n entries[searchPosition + 1],\n )\n while (comparison !== 0) {\n if (comparison > 0) {\n upperBound = searchPosition - 1\n } else if (comparison < 0) {\n lowerBound = searchPosition + 1\n }\n searchPosition = Math.ceil((upperBound - lowerBound) / 2) + lowerBound\n comparison = compare(entries[searchPosition], entries[searchPosition + 1])\n }\n\n // here's where we read forward\n relevant.push(entries[searchPosition])\n let i = searchPosition + 1\n for (; i < entries.length; i += 1) {\n relevant.push(entries[i])\n if (entries[i][UNCOMPRESSED_POSITION] >= endPosition) {\n break\n }\n }\n if (relevant[relevant.length - 1][UNCOMPRESSED_POSITION] < endPosition) {\n relevant.push([])\n }\n return relevant\n }\n}\n","import { Buffer } from 'buffer'\nimport { LocalFile, GenericFilehandle } from 'generic-filehandle'\n\n// locals\nimport { unzip } from './unzip'\nimport GziIndex from './gziIndex'\n\nexport default class BgzFilehandle {\n filehandle: GenericFilehandle\n gzi: GziIndex\n\n constructor({\n filehandle,\n path,\n gziFilehandle,\n gziPath,\n }: {\n filehandle?: GenericFilehandle\n path?: string\n gziFilehandle?: GenericFilehandle\n gziPath?: string\n }) {\n if (filehandle) {\n this.filehandle = filehandle\n } else if (path) {\n this.filehandle = new LocalFile(path)\n } else {\n throw new TypeError('either filehandle or path must be defined')\n }\n\n if (!gziFilehandle && !gziPath && !path) {\n throw new TypeError('either gziFilehandle or gziPath must be defined')\n }\n\n this.gzi = new GziIndex({\n filehandle: gziFilehandle,\n path: !gziFilehandle && !gziPath && path ? gziPath : `${path}.gzi`,\n })\n }\n\n async stat() {\n const compressedStat = await this.filehandle.stat()\n return Object.assign(compressedStat, {\n size: await this.getUncompressedFileSize(),\n blocks: undefined,\n blksize: undefined,\n })\n }\n\n async getUncompressedFileSize() {\n // read the last block's ISIZE (see gzip RFC),\n // and add it to its uncompressedPosition\n const [, uncompressedPosition] = await this.gzi.getLastBlock()\n\n const { size } = await this.filehandle.stat()\n\n const buf = Buffer.allocUnsafe(4)\n // note: there should be a 28-byte EOF marker (an empty block) at\n // the end of the file, so we skip backward past that\n const { bytesRead } = await this.filehandle.read(buf, 0, 4, size - 28 - 4)\n if (bytesRead !== 4) {\n throw new Error('read error')\n }\n const lastBlockUncompressedSize = buf.readUInt32LE(0)\n return uncompressedPosition + lastBlockUncompressedSize\n }\n\n async _readAndUncompressBlock(\n blockBuffer: Buffer,\n [compressedPosition]: [number],\n [nextCompressedPosition]: [number],\n ) {\n let next = nextCompressedPosition\n if (!next) {\n next = (await this.filehandle.stat()).size\n }\n\n // read the compressed data into the block buffer\n const blockCompressedLength = next - compressedPosition\n\n await this.filehandle.read(\n blockBuffer,\n 0,\n blockCompressedLength,\n compressedPosition,\n )\n\n // uncompress it\n const unzippedBuffer = await unzip(\n blockBuffer.slice(0, blockCompressedLength),\n )\n\n return unzippedBuffer as Buffer\n }\n\n async read(buf: Buffer, offset: number, length: number, position: number) {\n // get the block positions for this read\n const blockPositions = await this.gzi.getRelevantBlocksForRead(\n length,\n position,\n )\n const blockBuffer = Buffer.allocUnsafe(32768 * 2)\n // uncompress the blocks and read from them one at a time to keep memory usage down\n let destinationOffset = offset\n let bytesRead = 0\n for (\n let blockNum = 0;\n blockNum < blockPositions.length - 1;\n blockNum += 1\n ) {\n // eslint-disable-next-line no-await-in-loop\n const uncompressedBuffer = await this._readAndUncompressBlock(\n blockBuffer,\n blockPositions[blockNum],\n blockPositions[blockNum + 1],\n )\n const [, uncompressedPosition] = blockPositions[blockNum]\n const sourceOffset =\n uncompressedPosition >= position ? 0 : position - uncompressedPosition\n const sourceEnd =\n Math.min(\n position + length,\n uncompressedPosition + uncompressedBuffer.length,\n ) - uncompressedPosition\n if (sourceOffset >= 0 && sourceOffset < uncompressedBuffer.length) {\n uncompressedBuffer.copy(buf, destinationOffset, sourceOffset, sourceEnd)\n destinationOffset += sourceEnd - sourceOffset\n bytesRead += sourceEnd - sourceOffset\n }\n }\n\n return { bytesRead, buffer: buf }\n }\n}\n","// Generated by `./pycrc.py --algorithm=table-driven --model=crc-32 --generate=c`\nlet TABLE = [\n 0x00000000, 0x77073096, 0xee0e612c, 0x990951ba, 0x076dc419, 0x706af48f, 0xe963a535, 0x9e6495a3,\n 0x0edb8832, 0x79dcb8a4, 0xe0d5e91e, 0x97d2d988, 0x09b64c2b, 0x7eb17cbd, 0xe7b82d07, 0x90bf1d91,\n 0x1db71064, 0x6ab020f2, 0xf3b97148, 0x84be41de, 0x1adad47d, 0x6ddde4eb, 0xf4d4b551, 0x83d385c7,\n 0x136c9856, 0x646ba8c0, 0xfd62f97a, 0x8a65c9ec, 0x14015c4f, 0x63066cd9, 0xfa0f3d63, 0x8d080df5,\n 0x3b6e20c8, 0x4c69105e, 0xd56041e4, 0xa2677172, 0x3c03e4d1, 0x4b04d447, 0xd20d85fd, 0xa50ab56b,\n 0x35b5a8fa, 0x42b2986c, 0xdbbbc9d6, 0xacbcf940, 0x32d86ce3, 0x45df5c75, 0xdcd60dcf, 0xabd13d59,\n 0x26d930ac, 0x51de003a, 0xc8d75180, 0xbfd06116, 0x21b4f4b5, 0x56b3c423, 0xcfba9599, 0xb8bda50f,\n 0x2802b89e, 0x5f058808, 0xc60cd9b2, 0xb10be924, 0x2f6f7c87, 0x58684c11, 0xc1611dab, 0xb6662d3d,\n 0x76dc4190, 0x01db7106, 0x98d220bc, 0xefd5102a, 0x71b18589, 0x06b6b51f, 0x9fbfe4a5, 0xe8b8d433,\n 0x7807c9a2, 0x0f00f934, 0x9609a88e, 0xe10e9818, 0x7f6a0dbb, 0x086d3d2d, 0x91646c97, 0xe6635c01,\n 0x6b6b51f4, 0x1c6c6162, 0x856530d8, 0xf262004e, 0x6c0695ed, 0x1b01a57b, 0x8208f4c1, 0xf50fc457,\n 0x65b0d9c6, 0x12b7e950, 0x8bbeb8ea, 0xfcb9887c, 0x62dd1ddf, 0x15da2d49, 0x8cd37cf3, 0xfbd44c65,\n 0x4db26158, 0x3ab551ce, 0xa3bc0074, 0xd4bb30e2, 0x4adfa541, 0x3dd895d7, 0xa4d1c46d, 0xd3d6f4fb,\n 0x4369e96a, 0x346ed9fc, 0xad678846, 0xda60b8d0, 0x44042d73, 0x33031de5, 0xaa0a4c5f, 0xdd0d7cc9,\n 0x5005713c, 0x270241aa, 0xbe0b1010, 0xc90c2086, 0x5768b525, 0x206f85b3, 0xb966d409, 0xce61e49f,\n 0x5edef90e, 0x29d9c998, 0xb0d09822, 0xc7d7a8b4, 0x59b33d17, 0x2eb40d81, 0xb7bd5c3b, 0xc0ba6cad,\n 0xedb88320, 0x9abfb3b6, 0x03b6e20c, 0x74b1d29a, 0xead54739, 0x9dd277af, 0x04db2615, 0x73dc1683,\n 0xe3630b12, 0x94643b84, 0x0d6d6a3e, 0x7a6a5aa8, 0xe40ecf0b, 0x9309ff9d, 0x0a00ae27, 0x7d079eb1,\n 0xf00f9344, 0x8708a3d2, 0x1e01f268, 0x6906c2fe, 0xf762575d, 0x806567cb, 0x196c3671, 0x6e6b06e7,\n 0xfed41b76, 0x89d32be0, 0x10da7a5a, 0x67dd4acc, 0xf9b9df6f, 0x8ebeeff9, 0x17b7be43, 0x60b08ed5,\n 0xd6d6a3e8, 0xa1d1937e, 0x38d8c2c4, 0x4fdff252, 0xd1bb67f1, 0xa6bc5767, 0x3fb506dd, 0x48b2364b,\n 0xd80d2bda, 0xaf0a1b4c, 0x36034af6, 0x41047a60, 0xdf60efc3, 0xa867df55, 0x316e8eef, 0x4669be79,\n 0xcb61b38c, 0xbc66831a, 0x256fd2a0, 0x5268e236, 0xcc0c7795, 0xbb0b4703, 0x220216b9, 0x5505262f,\n 0xc5ba3bbe, 0xb2bd0b28, 0x2bb45a92, 0x5cb36a04, 0xc2d7ffa7, 0xb5d0cf31, 0x2cd99e8b, 0x5bdeae1d,\n 0x9b64c2b0, 0xec63f226, 0x756aa39c, 0x026d930a, 0x9c0906a9, 0xeb0e363f, 0x72076785, 0x05005713,\n 0x95bf4a82, 0xe2b87a14, 0x7bb12bae, 0x0cb61b38, 0x92d28e9b, 0xe5d5be0d, 0x7cdcefb7, 0x0bdbdf21,\n 0x86d3d2d4, 0xf1d4e242, 0x68ddb3f8, 0x1fda836e, 0x81be16cd, 0xf6b9265b, 0x6fb077e1, 0x18b74777,\n 0x88085ae6, 0xff0f6a70, 0x66063bca, 0x11010b5c, 0x8f659eff, 0xf862ae69, 0x616bffd3, 0x166ccf45,\n 0xa00ae278, 0xd70dd2ee, 0x4e048354, 0x3903b3c2, 0xa7672661, 0xd06016f7, 0x4969474d, 0x3e6e77db,\n 0xaed16a4a, 0xd9d65adc, 0x40df0b66, 0x37d83bf0, 0xa9bcae53, 0xdebb9ec5, 0x47b2cf7f, 0x30b5ffe9,\n 0xbdbdf21c, 0xcabac28a, 0x53b39330, 0x24b4a3a6, 0xbad03605, 0xcdd70693, 0x54de5729, 0x23d967bf,\n 0xb3667a2e, 0xc4614ab8, 0x5d681b02, 0x2a6f2b94, 0xb40bbe37, 0xc30c8ea1, 0x5a05df1b, 0x2d02ef8d,\n];\nif (typeof Int32Array !== 'undefined') {\n TABLE = new Int32Array(TABLE);\n}\nconst crc32 = (current, previous) => {\n // eslint-disable-next-line @typescript-eslint/no-non-null-assertion\n let crc = previous === 0 ? 0 : ~~previous ^ -1;\n for (let index = 0; index < current.length; index++) {\n crc = TABLE[(crc ^ current[index]) & 0xff] ^ (crc >>> 8);\n }\n return crc ^ -1;\n};\nexport default crc32;\n","/* eslint-disable @typescript-eslint/no-explicit-any */\n/* eslint-disable no-prototype-builtins */\nimport { Buffer } from 'buffer';\nconst createBuffer = (value, encoding) => Buffer.from(value, encoding);\nexport default createBuffer;\n","import crc32 from './calculators/crc32.js';\nimport defineCrc from 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React from 'react'\nimport {\n Button,\n Checkbox,\n DialogContent,\n DialogActions,\n FormControlLabel,\n Typography,\n} from '@mui/material'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { AbstractSessionModel } from '@jbrowse/core/util'\n\nfunction ellipses(slug: string) {\n return slug.length > 20 ? `${slug.slice(0, 20)}...` : slug\n}\n\nconst useStyles = makeStyles()(theme => ({\n connectionContainer: {\n width: 500,\n margin: theme.spacing(4),\n },\n}))\n\nconst ConnectionRow = observer(function ConnectionRow({\n conf,\n session,\n breakConnection,\n}: {\n conf: AnyConfigurationModel\n session: AbstractSessionModel\n breakConnection: (arg: AnyConfigurationModel) => void\n}) {\n const { connectionInstances: instances = [] } = session\n const name = readConfObject(conf, 'name')\n const assemblyNames = readConfObject(conf, 'assemblyNames')\n const found = instances.find(conn => name === conn.name)\n return (\n {\n if (found) {\n breakConnection(conf)\n } else {\n session.makeConnection?.(conf)\n }\n }}\n color=\"primary\"\n />\n }\n label={[\n name,\n assemblyNames.length ? `(${ellipses(assemblyNames.join(','))})` : '',\n ]\n .filter(f => !!f)\n .join(' ')}\n />\n )\n})\n\nconst ConnectionList = observer(function ConnectionsList({\n session,\n breakConnection,\n}: {\n session: AbstractSessionModel\n breakConnection: (arg: AnyConfigurationModel) => void\n}) {\n const { classes } = useStyles()\n return (\n

\n {!session.connections.length ? (\n No connections found\n ) : (\n session.connections.map((conf, idx) => (\n

\n \n

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React, { useEffect, useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { getSnapshot } from 'mobx-state-tree'\n\nimport {\n Alert,\n Button,\n DialogActions,\n DialogContent,\n DialogContentText,\n TextField,\n Typography,\n} from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport copy from 'copy-to-clipboard'\n\nimport { getSession, isSessionWithShareURL } from '@jbrowse/core/util'\nimport { Dialog, ErrorMessage } from '@jbrowse/core/ui'\nimport { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons'\n\n// locals\nimport { shareSessionToDynamo } from '../../sessionSharing'\nimport { GridBookmarkModel } from '../../model'\n\nconst useStyles = makeStyles()(() => ({\n flexItem: {\n margin: 5,\n },\n content: {\n display: 'flex',\n flexFlow: 'column',\n gap: '5px',\n },\n}))\n\nconst ShareBookmarksDialog = observer(function ({\n onClose,\n model,\n}: {\n onClose: () => void\n model: GridBookmarkModel\n}) {\n const { classes } = useStyles()\n 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import('crypto-js/enc-utf8')\n const bytes = AES.decrypt(text, password)\n return bytes.toString(Utf8)\n}\n\nfunction getErrorMsg(err: string) {\n try {\n const obj = JSON.parse(err)\n return obj.message\n } catch (e) {\n return err\n }\n}\n// writes the encrypted session, current datetime, and referer to DynamoDB\nexport async function shareSessionToDynamo(\n session: unknown,\n url: string,\n referer: string,\n) {\n const sess = await toUrlSafeB64(JSON.stringify(session))\n const password = generateUID(5)\n const encryptedSession = await encrypt(sess, password)\n\n const data = new FormData()\n data.append('session', encryptedSession)\n data.append('dateShared', `${Date.now()}`)\n data.append('referer', referer)\n\n const response = await fetch(`${url}share`, {\n method: 'POST',\n mode: 'cors',\n body: data,\n })\n\n if (!response.ok) {\n const err = await response.text()\n throw new Error(getErrorMsg(err))\n }\n const json = await response.json()\n return {\n json,\n 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pm),\n })\n const header = await updateStatus(\n 'Downloading bigwig header',\n statusCallback,\n () => bigwig.getHeader(opts),\n )\n return { bigwig, header }\n }\n\n async setup(opts?: BaseOptions) {\n if (!this.setupP) {\n this.setupP = this.setupPre(opts).catch((e: unknown) => {\n this.setupP = undefined\n throw e\n })\n }\n return this.setupP\n }\n\n public async getRefNames(opts?: BaseOptions) {\n const { header } = await this.setup(opts)\n return Object.keys(header.refsByName)\n }\n\n public async refIdToName(refId: number) {\n const { header } = await this.setup()\n return header.refsByNumber[refId]?.name\n }\n\n public async getGlobalStats(opts?: BaseOptions) {\n const { header } = await this.setup(opts)\n return rectifyStats(header.totalSummary as UnrectifiedQuantitativeStats)\n }\n\n public getFeatures(region: Region, opts: WiggleOptions = {}) {\n const { refName, start, end } = region\n const {\n bpPerPx = 0,\n signal,\n resolution = 1,\n statusCallback = () => {},\n } = opts\n return ObservableCreate(async observer => {\n statusCallback('Downloading bigwig data')\n const source = this.getConf('source')\n const { bigwig } = await this.setup(opts)\n const feats = await bigwig.getFeatures(refName, start, end, {\n ...opts,\n basesPerSpan: bpPerPx / resolution,\n })\n\n for (const data of feats) {\n if (source) {\n // @ts-expect-error\n data.source = source\n }\n const uniqueId = `${source}:${region.refName}:${data.start}-${data.end}`\n // @ts-expect-error\n data.refName = refName\n data.uniqueId = uniqueId\n observer.next({\n // @ts-expect-error\n get: (str: string) => (data as Record)[str],\n id: () => uniqueId,\n // @ts-expect-error\n toJSON: () => data,\n })\n }\n observer.complete()\n }, signal)\n }\n\n // always render bigwig instead of calculating a feature density for it\n async getMultiRegionFeatureDensityStats(_regions: Region[]) {\n return { featureDensity: 0 }\n }\n\n public freeResources(): void {}\n}\n"],"names":["BigWigAdapter","BaseFeatureDataAdapter","setupPre","opts","statusCallback","pm","this","pluginManager","bigwig","BigWig","filehandle","openLocation","getConf","header","updateStatus","getHeader","setup","setupP","catch","e","undefined","getRefNames","Object","keys","refsByName","refIdToName","refId","refsByNumber","name","getGlobalStats","rectifyStats","totalSummary","getFeatures","region","refName","start","end","bpPerPx","signal","resolution","ObservableCreate","async","source","feats","basesPerSpan","data","uniqueId","observer","next","get","str","id","toJSON","complete","getMultiRegionFeatureDensityStats","_regions","featureDensity","freeResources"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/4284.61dbc58f.chunk.js --- a/x/static/js/4284.61dbc58f.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[4284,7706],{94284:(e,t,n)=>{n.r(t),n.d(t,{default:()=>o});var r=n(7706),i=n(99546),a=n(99834),s=n(46377);class o extends s.BaseAdapter{async getData(){const e=this.pluginManager,t=this.getConf("cytobandLocation");if(""===t.uri||"/path/to/cytoband.txt.gz"===t.uri)return[];const n=await(0,a.openLocation)(t,e).readFile(),s=(0,i.isGzip)(n)?await(0,r.unzip)(n):n;return new TextDecoder("utf8",{fatal:!0}).decode(s).split(/\n|\r\n|\r/).filter((e=>!!e.trim())).map(((e,t)=>{const[n,r,a,s,o]=e.split("\t");return new i.SimpleFeature({uniqueId:`${t}`,refName:n,start:+r,end:+a,name:s,type:o})}))}freeResources(){}}},7706:(e,t,n)=>{n.d(t,{sG:()=>d,unzip:()=>s,i2:()=>o});var r=n(35451),i=n(45834),a=n(57864);async function s(e){try{let t,n=0,i=0;const s=[];let o,l=0;do{const r=e.subarray(n);if(o=new a.Inflate,({strm:t}=o),o.push(r,a.Z_SYNC_FLUSH),o.err)throw new 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{}\n}\n","import { Buffer } from 'buffer'\n//@ts-ignore\nimport { Z_SYNC_FLUSH, Inflate } from 'pako'\n\ninterface VirtualOffset {\n blockPosition: number\n dataPosition: number\n}\ninterface Chunk {\n minv: VirtualOffset\n maxv: VirtualOffset\n}\n\n// browserify-zlib, which is the zlib shim used by default in webpacked code,\n// does not properly uncompress bgzf chunks that contain more than\n// one bgzf block, so export an unzip function that uses pako directly\n// if we are running in a browser.\nasync function unzip(inputData: Buffer) {\n try {\n let strm\n let pos = 0\n let i = 0\n const chunks = []\n let totalSize = 0\n let inflator\n do {\n const remainingInput = inputData.subarray(pos)\n inflator = new Inflate()\n //@ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n pos += strm.next_in\n chunks[i] = inflator.result as Uint8Array\n totalSize += chunks[i].length\n i += 1\n } while (strm.avail_in)\n\n const result = new Uint8Array(totalSize)\n for (let i = 0, offset = 0; i < chunks.length; i++) {\n result.set(chunks[i], offset)\n offset += chunks[i].length\n }\n return Buffer.from(result)\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\n// similar to pakounzip, except it does extra counting\n// to return the positions of compressed and decompressed\n// data offsets\nasync function unzipChunk(inputData: Buffer) {\n try {\n let strm\n let cpos = 0\n let dpos = 0\n const blocks = []\n const cpositions = []\n const dpositions = []\n do {\n const remainingInput = inputData.slice(cpos)\n const inflator = new Inflate()\n // @ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n const buffer = Buffer.from(inflator.result)\n blocks.push(buffer)\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n\n cpos += strm.next_in\n dpos += buffer.length\n } while (strm.avail_in)\n\n const buffer = Buffer.concat(blocks)\n return { buffer, cpositions, dpositions }\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\n// similar to unzipChunk above but slices (0,minv.dataPosition) and\n// (maxv.dataPosition,end) off\nasync function unzipChunkSlice(inputData: Buffer, chunk: Chunk) {\n try {\n let strm\n const { minv, maxv } = chunk\n let cpos = minv.blockPosition\n let dpos = minv.dataPosition\n const chunks = []\n const cpositions = []\n const dpositions = []\n\n let totalSize = 0\n let i = 0\n do {\n const remainingInput = inputData.subarray(cpos - minv.blockPosition)\n const inflator = new Inflate()\n // @ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n const buffer = inflator.result\n chunks.push(buffer as Uint8Array)\n let len = buffer.length\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n if (chunks.length === 1 && minv.dataPosition) {\n // this is the first chunk, trim it\n chunks[0] = chunks[0].subarray(minv.dataPosition)\n len = chunks[0].length\n }\n const origCpos = cpos\n cpos += strm.next_in\n dpos += len\n\n if (origCpos >= maxv.blockPosition) {\n // this is the last chunk, trim it and stop decompressing\n // note if it is the same block is minv it subtracts that already\n // trimmed part of the slice length\n\n chunks[i] = chunks[i].subarray(\n 0,\n maxv.blockPosition === minv.blockPosition\n ? maxv.dataPosition - minv.dataPosition + 1\n : maxv.dataPosition + 1,\n )\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n totalSize += chunks[i].length\n break\n }\n totalSize += chunks[i].length\n i++\n } while (strm.avail_in)\n\n const result = new Uint8Array(totalSize)\n for (let i = 0, offset = 0; i < chunks.length; i++) {\n result.set(chunks[i], offset)\n offset += chunks[i].length\n }\n const buffer = Buffer.from(result)\n\n return { buffer, cpositions, dpositions }\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\nfunction nodeUnzip() {\n throw new Error('nodeUnzip not implemented.')\n}\n\nexport { unzip, unzipChunk, unzipChunkSlice, unzip as pakoUnzip, nodeUnzip }\n","import Long from 'long'\nimport { Buffer } from 'buffer'\nimport { LocalFile, GenericFilehandle } from 'generic-filehandle'\n\n// const COMPRESSED_POSITION = 0\nconst UNCOMPRESSED_POSITION = 1\n\nexport default class GziIndex {\n filehandle: GenericFilehandle\n\n index?: any\n\n constructor({\n filehandle,\n path,\n }: {\n filehandle?: GenericFilehandle\n path?: string\n }) {\n if (filehandle) {\n this.filehandle = filehandle\n } else if (path) {\n this.filehandle = new LocalFile(path)\n } else {\n throw new TypeError('either filehandle or path must be defined')\n }\n }\n\n _readLongWithOverflow(buf: Buffer, offset = 0, unsigned = true) {\n //@ts-ignore\n const long = Long.fromBytesLE(buf.slice(offset, offset + 8), unsigned)\n if (\n long.greaterThan(Number.MAX_SAFE_INTEGER) ||\n long.lessThan(Number.MIN_SAFE_INTEGER)\n ) {\n throw new TypeError('integer overflow')\n }\n\n return long.toNumber()\n }\n\n _getIndex() {\n if (!this.index) {\n this.index = this._readIndex()\n }\n return this.index\n }\n\n async _readIndex() {\n let buf = Buffer.allocUnsafe(8)\n await this.filehandle.read(buf, 0, 8, 0)\n const numEntries = this._readLongWithOverflow(buf, 0, true)\n if (!numEntries) {\n return [[0, 0]]\n }\n\n const entries = new Array(numEntries + 1)\n entries[0] = [0, 0]\n\n // TODO rewrite this to make an index-index that stays in memory\n const bufSize = 8 * 2 * numEntries\n if (bufSize > Number.MAX_SAFE_INTEGER) {\n throw new TypeError('integer overflow')\n }\n buf = Buffer.allocUnsafe(bufSize)\n await this.filehandle.read(buf, 0, bufSize, 8)\n for (let entryNumber = 0; entryNumber < numEntries; entryNumber += 1) {\n const compressedPosition = this._readLongWithOverflow(\n buf,\n entryNumber * 16,\n )\n const uncompressedPosition = this._readLongWithOverflow(\n buf,\n entryNumber * 16 + 8,\n )\n entries[entryNumber + 1] = [compressedPosition, uncompressedPosition]\n }\n\n return entries\n }\n\n async getLastBlock() {\n const entries = await this._getIndex()\n if (!entries.length) {\n return undefined\n }\n return entries[entries.length - 1]\n }\n\n async getRelevantBlocksForRead(length: number, position: number) {\n const endPosition = position + length\n if (length === 0) {\n return []\n }\n const entries = await this._getIndex()\n const relevant = []\n\n // binary search to find the block that the\n // read starts in and extend forward from that\n const compare = (entry: any, nextEntry: any) => {\n const uncompressedPosition = entry[UNCOMPRESSED_POSITION]\n const nextUncompressedPosition = nextEntry\n ? nextEntry[UNCOMPRESSED_POSITION]\n : Infinity\n // block overlaps read start\n if (\n uncompressedPosition <= position &&\n nextUncompressedPosition > position\n ) {\n return 0\n // block is before read start\n }\n if (uncompressedPosition < position) {\n return -1\n }\n // block is after read start\n return 1\n }\n\n let lowerBound = 0\n let upperBound = entries.length - 1\n let searchPosition = Math.floor(entries.length / 2)\n\n let comparison = compare(\n entries[searchPosition],\n entries[searchPosition + 1],\n )\n while (comparison !== 0) {\n if (comparison > 0) {\n upperBound = searchPosition - 1\n } else if (comparison < 0) {\n lowerBound = searchPosition + 1\n }\n searchPosition = Math.ceil((upperBound - lowerBound) / 2) + lowerBound\n comparison = compare(entries[searchPosition], entries[searchPosition + 1])\n }\n\n // here's where we read forward\n relevant.push(entries[searchPosition])\n let i = searchPosition + 1\n for (; i < entries.length; i += 1) {\n relevant.push(entries[i])\n if (entries[i][UNCOMPRESSED_POSITION] >= endPosition) {\n break\n }\n }\n if (relevant[relevant.length - 1][UNCOMPRESSED_POSITION] < endPosition) {\n relevant.push([])\n }\n return relevant\n }\n}\n","import { Buffer } from 'buffer'\nimport { LocalFile, GenericFilehandle } from 'generic-filehandle'\n\n// locals\nimport { unzip } from './unzip'\nimport GziIndex from './gziIndex'\n\nexport default class BgzFilehandle {\n filehandle: GenericFilehandle\n gzi: GziIndex\n\n constructor({\n filehandle,\n path,\n gziFilehandle,\n gziPath,\n }: {\n filehandle?: GenericFilehandle\n path?: string\n gziFilehandle?: GenericFilehandle\n gziPath?: string\n }) {\n if (filehandle) {\n this.filehandle = filehandle\n } else if (path) {\n this.filehandle = new LocalFile(path)\n } else {\n throw new TypeError('either filehandle or path must be defined')\n }\n\n if (!gziFilehandle && !gziPath && !path) {\n throw new TypeError('either gziFilehandle or gziPath must be defined')\n }\n\n this.gzi = new GziIndex({\n filehandle: gziFilehandle,\n path: !gziFilehandle && !gziPath && path ? gziPath : `${path}.gzi`,\n })\n }\n\n async stat() {\n const compressedStat = await this.filehandle.stat()\n return Object.assign(compressedStat, {\n size: await this.getUncompressedFileSize(),\n blocks: undefined,\n blksize: undefined,\n })\n }\n\n async getUncompressedFileSize() {\n // read the last block's ISIZE (see gzip RFC),\n // and add it to its uncompressedPosition\n const [, uncompressedPosition] = await this.gzi.getLastBlock()\n\n const { size } = await this.filehandle.stat()\n\n const buf = Buffer.allocUnsafe(4)\n // note: there should be a 28-byte EOF marker (an empty block) at\n // the end of the file, so we skip backward past that\n const { bytesRead } = await this.filehandle.read(buf, 0, 4, size - 28 - 4)\n if (bytesRead !== 4) {\n throw new Error('read error')\n }\n const lastBlockUncompressedSize = buf.readUInt32LE(0)\n return uncompressedPosition + lastBlockUncompressedSize\n }\n\n async _readAndUncompressBlock(\n blockBuffer: Buffer,\n [compressedPosition]: [number],\n [nextCompressedPosition]: [number],\n ) {\n let next = nextCompressedPosition\n if (!next) {\n next = (await this.filehandle.stat()).size\n }\n\n // read the compressed data into the block buffer\n const blockCompressedLength = next - compressedPosition\n\n await this.filehandle.read(\n blockBuffer,\n 0,\n blockCompressedLength,\n compressedPosition,\n )\n\n // uncompress it\n const unzippedBuffer = await unzip(\n blockBuffer.slice(0, blockCompressedLength),\n )\n\n return unzippedBuffer as Buffer\n }\n\n async read(buf: Buffer, offset: number, length: number, position: number) {\n // get the block positions for this read\n const blockPositions = await this.gzi.getRelevantBlocksForRead(\n length,\n position,\n )\n const blockBuffer = Buffer.allocUnsafe(32768 * 2)\n // uncompress the blocks and read from them one at a time to keep memory usage down\n let destinationOffset = offset\n let bytesRead = 0\n for (\n let blockNum = 0;\n blockNum < blockPositions.length - 1;\n blockNum += 1\n ) {\n // eslint-disable-next-line no-await-in-loop\n const uncompressedBuffer = await this._readAndUncompressBlock(\n blockBuffer,\n blockPositions[blockNum],\n blockPositions[blockNum + 1],\n )\n const [, uncompressedPosition] = blockPositions[blockNum]\n const sourceOffset =\n uncompressedPosition >= position ? 0 : position - uncompressedPosition\n const sourceEnd =\n Math.min(\n position + length,\n uncompressedPosition + uncompressedBuffer.length,\n ) - uncompressedPosition\n if (sourceOffset >= 0 && sourceOffset < uncompressedBuffer.length) {\n uncompressedBuffer.copy(buf, destinationOffset, sourceOffset, sourceEnd)\n destinationOffset += sourceEnd - sourceOffset\n bytesRead += sourceEnd - sourceOffset\n }\n }\n\n return { 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{ parseBreakend } from '@gmod/vcf'\nimport { Feature, assembleLocString } from '@jbrowse/core/util'\n\nexport function makeFeaturePair(feature: Feature, alt?: string) {\n const bnd = alt ? parseBreakend(alt) : undefined\n const start = feature.get('start')\n let end = feature.get('end')\n const strand = feature.get('strand')\n const mate = feature.get('mate') as\n | {\n refName: string\n start: number\n end: number\n mateDirection?: number\n }\n | undefined\n const refName = feature.get('refName')\n\n let mateRefName: string | undefined\n let mateEnd = 0\n let mateStart = 0\n let joinDirection = 0\n let mateDirection = 0\n\n // one sided bracket used, because there could be and we just check\n // startswith below\n const symbolicAlleles = [' alt?.startsWith(a))) {\n // END is defined to be a single value, not an array. CHR2 not defined in\n // VCF spec, but should be similar\n const info = feature.get('INFO')\n const e = info?.END?.[0] ?? end\n mateRefName = info?.CHR2?.[0] ?? refName\n mateEnd = e\n mateStart = e - 1\n // re-adjust the arc to be from start to end of feature by re-assigning end\n // to the 'mate'\n end = start + 1\n } else if (bnd?.MatePosition) {\n const matePosition = bnd.MatePosition.split(':')\n mateDirection = bnd.MateDirection === 'left' ? 1 : -1\n joinDirection = bnd.Join === 'left' ? -1 : 1\n mateEnd = +matePosition[1]!\n mateStart = +matePosition[1]! - 1\n mateRefName = matePosition[0]\n }\n\n return {\n k1: {\n refName,\n start,\n end,\n strand,\n mateDirection,\n },\n k2: mate ?? {\n refName: mateRefName || 'unknown',\n end: mateEnd,\n start: mateStart,\n mateDirection: joinDirection,\n },\n }\n}\n\nexport function makeSummary(feature: Feature, alt?: string) {\n const { k1, k2 } = makeFeaturePair(feature, alt)\n return [\n feature.get('name'),\n feature.get('id'),\n assembleLocString(k1),\n assembleLocString(k2),\n feature.get('INFO')?.SVTYPE,\n alt,\n ]\n .filter(f => !!f)\n .join(' - ')\n}\n","import React, { lazy, Suspense, useRef, useState } from 'react'\nimport { observer } from 'mobx-react'\nimport {\n AbstractSessionModel,\n Feature,\n getContainingView,\n getSession,\n getStrokeProps,\n} from '@jbrowse/core/util'\nimport { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport { Assembly } from '@jbrowse/core/assemblyManager/assembly'\nimport { getConf } from '@jbrowse/core/configuration'\n\n// local\nimport { LinearArcDisplayModel } from '../model'\nimport { makeFeaturePair, makeSummary } from './util'\n\nconst ArcTooltip = lazy(() => import('../../ArcTooltip'))\n\ntype LGV = LinearGenomeViewModel\n\nconst Arc = observer(function ({\n model,\n feature,\n alt,\n assembly,\n view,\n}: {\n feature: Feature\n alt?: string\n model: LinearArcDisplayModel\n assembly: Assembly\n session: AbstractSessionModel\n view: LinearGenomeViewModel\n}) {\n const [mouseOvered, setMouseOvered] = useState(false)\n const { height } = model\n const { k1, k2 } = makeFeaturePair(feature, alt)\n const ref = useRef(null)\n const c = getConf(model, 'color', { feature, alt })\n const ra1 = assembly.getCanonicalRefName(k1.refName) || k1.refName\n const ra2 = assembly.getCanonicalRefName(k2.refName) || k2.refName\n const p1 = k1.start\n const p2 = k2.start\n const r1 = view.bpToPx({ refName: ra1, coord: p1 })?.offsetPx\n const r2 = view.bpToPx({ refName: ra2, coord: p2 })?.offsetPx\n\n if (r1 !== undefined && r2 !== undefined) {\n const radius = (r2 - r1) / 2\n const absrad = Math.abs(radius)\n const destY = Math.min(height, absrad)\n const p1 = r1 - view.offsetPx\n const p2 = r2 - view.offsetPx\n const left = p1\n const right = p2\n const col = mouseOvered ? 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styles[`padding${capitalize(ownerState.padding)}`], ownerState.align !== 'inherit' && styles[`align${capitalize(ownerState.align)}`], ownerState.stickyHeader && styles.stickyHeader];\n }\n})(memoTheme(({\n theme\n}) => ({\n ...theme.typography.body2,\n display: 'table-cell',\n verticalAlign: 'inherit',\n // Workaround for a rendering bug with spanned columns in Chrome 62.0.\n // Removes the alpha (sets it to 1), and lightens or darkens the theme color.\n borderBottom: theme.vars ? `1px solid ${theme.vars.palette.TableCell.border}` : `1px solid\n ${theme.palette.mode === 'light' ? lighten(alpha(theme.palette.divider, 1), 0.88) : darken(alpha(theme.palette.divider, 1), 0.68)}`,\n textAlign: 'left',\n padding: 16,\n variants: [{\n props: {\n variant: 'head'\n },\n style: {\n color: (theme.vars || theme).palette.text.primary,\n lineHeight: theme.typography.pxToRem(24),\n fontWeight: theme.typography.fontWeightMedium\n }\n }, {\n props: {\n variant: 'body'\n },\n style: {\n color: (theme.vars || theme).palette.text.primary\n }\n }, {\n props: {\n variant: 'footer'\n },\n style: {\n color: (theme.vars || theme).palette.text.secondary,\n lineHeight: theme.typography.pxToRem(21),\n fontSize: theme.typography.pxToRem(12)\n }\n }, {\n props: {\n size: 'small'\n },\n style: {\n padding: '6px 16px',\n [`&.${tableCellClasses.paddingCheckbox}`]: {\n width: 24,\n // prevent the checkbox column from growing\n padding: '0 12px 0 16px',\n '& > *': {\n padding: 0\n }\n }\n }\n }, {\n props: {\n padding: 'checkbox'\n },\n style: {\n width: 48,\n // prevent the checkbox column from growing\n padding: '0 0 0 4px'\n }\n }, {\n props: {\n padding: 'none'\n },\n style: {\n padding: 0\n }\n }, {\n props: {\n align: 'left'\n },\n style: {\n textAlign: 'left'\n }\n }, {\n props: {\n align: 'center'\n },\n style: {\n textAlign: 'center'\n }\n }, {\n props: {\n align: 'right'\n },\n style: {\n textAlign: 'right',\n flexDirection: 'row-reverse'\n }\n }, {\n props: {\n align: 'justify'\n },\n style: {\n textAlign: 'justify'\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.stickyHeader,\n style: {\n position: 'sticky',\n top: 0,\n zIndex: 2,\n backgroundColor: (theme.vars || theme).palette.background.default\n }\n }]\n})));\n\n/**\n * The component renders a `` element when the parent context is a header\n * or otherwise a `` element.\n */\nconst TableCell = /*#__PURE__*/React.forwardRef(function TableCell(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiTableCell'\n });\n const {\n align = 'inherit',\n className,\n component: componentProp,\n padding: paddingProp,\n scope: scopeProp,\n size: sizeProp,\n sortDirection,\n variant: variantProp,\n ...other\n } = props;\n const table = React.useContext(TableContext);\n const tablelvl2 = React.useContext(Tablelvl2Context);\n const isHeadCell = tablelvl2 && tablelvl2.variant === 'head';\n let component;\n if (componentProp) {\n component = componentProp;\n } else {\n component = isHeadCell ? 'th' : 'td';\n }\n let scope = scopeProp;\n // scope is not a valid attribute for elements.\n // source: https://html.spec.whatwg.org/multipage/tables.html#the-td-element\n if (component === 'td') {\n scope = undefined;\n } else if (!scope && isHeadCell) {\n scope = 'col';\n }\n const variant = variantProp || tablelvl2 && tablelvl2.variant;\n const ownerState = {\n ...props,\n align,\n component,\n padding: paddingProp || (table && table.padding ? table.padding : 'normal'),\n size: sizeProp || (table && table.size ? table.size : 'medium'),\n sortDirection,\n stickyHeader: variant === 'head' && table && table.stickyHeader,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n let ariaSort = null;\n if (sortDirection) {\n ariaSort = sortDirection === 'asc' ? 'ascending' : 'descending';\n }\n return /*#__PURE__*/_jsx(TableCellRoot, {\n as: component,\n ref: ref,\n className: clsx(classes.root, className),\n \"aria-sort\": ariaSort,\n scope: scope,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? TableCell.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Set the text-align on the table cell content.\n *\n * Monetary or generally number fields **should be right aligned** as that allows\n * you to add them up quickly in your head without having to worry about decimals.\n * @default 'inherit'\n */\n align: PropTypes.oneOf(['center', 'inherit', 'justify', 'left', 'right']),\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * Sets the padding applied to the cell.\n * The prop defaults to the value (`'default'`) inherited from the parent Table component.\n */\n padding: PropTypes.oneOf(['checkbox', 'none', 'normal']),\n /**\n * Set scope attribute.\n */\n scope: PropTypes.string,\n /**\n * Specify the size of the cell.\n * The prop defaults to the value (`'medium'`) inherited from the parent Table component.\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['medium', 'small']), PropTypes.string]),\n /**\n * Set aria-sort direction.\n */\n sortDirection: PropTypes.oneOf(['asc', 'desc', false]),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * Specify the cell type.\n * The prop defaults to the value inherited from the parent TableHead, TableBody, or TableFooter components.\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['body', 'footer', 'head']), PropTypes.string])\n} : void 0;\nexport default TableCell;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getTableCellUtilityClass(slot) {\n return generateUtilityClass('MuiTableCell', slot);\n}\nconst tableCellClasses = generateUtilityClasses('MuiTableCell', ['root', 'head', 'body', 'footer', 'sizeSmall', 'sizeMedium', 'paddingCheckbox', 'paddingNone', 'alignLeft', 'alignCenter', 'alignRight', 'alignJustify', 'stickyHeader']);\nexport default tableCellClasses;"],"names":["TableCellRoot","name","slot","overridesResolver","props","styles","ownerState","root","variant","size","padding","align","stickyHeader","theme","typography","body2","display","verticalAlign","borderBottom","vars","palette","TableCell","border","mode","divider","textAlign","variants","style","color","text","primary","lineHeight","pxToRem","fontWeight","fontWeightMedium","secondary","fontSize","paddingCheckbox","width","flexDirection","position","top","zIndex","backgroundColor","background","default","inProps","ref","className","component","componentProp","paddingProp","scope","scopeProp","sizeProp","sortDirection","variantProp","other","table","tablelvl2","isHeadCell","undefined","classes","slots","useUtilityClasses","ariaSort","as","getTableCellUtilityClass"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/4456.93a06b74.chunk.js --- a/x/static/js/4456.93a06b74.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ 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,"../../../plugins/data-management/src/AddConnectionWidget/components/ConnectionTypeSelect.tsx","../../../plugins/data-management/src/AddConnectionWidget/components/AddConnectionWidget.tsx"],"sourcesContent":["import PluginManager from '@jbrowse/core/PluginManager'\nimport {\n IAnyStateTreeNode,\n Instance,\n getParent,\n isStateTreeNode,\n types,\n} from 'mobx-state-tree'\nimport { AnyConfigurationSchemaType } from '@jbrowse/core/configuration'\nimport { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager'\n\n// locals\nimport type { BaseRootModelType } from '../RootModel/BaseRootModel'\nimport { ElementId } from '@jbrowse/core/util/types/mst'\n\n/**\n * #stateModel BaseSessionModel\n *\n * base session shared by all JBrowse products. Be careful what you include\n * here, everything will use it.\n */\nexport function BaseSessionModel<\n ROOT_MODEL_TYPE extends BaseRootModelType,\n JB_CONFIG_SCHEMA extends AnyConfigurationSchemaType,\n>(_pluginManager: PluginManager) {\n return types\n .model({\n /**\n * #property\n */\n id: ElementId,\n /**\n * #property\n */\n name: types.string,\n /**\n * #property\n */\n margin: 0,\n })\n .volatile(() => ({\n /**\n * #volatile\n * this is the globally \"selected\" object. can be anything. code that\n * wants to deal with this should examine it to see what kind of thing it\n * is.\n */\n selection: undefined as unknown,\n /**\n * #volatile\n * this is the globally \"hovered\" object. can be anything. code that\n * wants to deal with this should examine it to see what kind of thing it\n * is.\n */\n hovered: undefined as unknown,\n }))\n .views(self => ({\n /**\n * #getter\n */\n get root() {\n return getParent(self)\n },\n }))\n .views(self => ({\n /**\n * #getter\n */\n get jbrowse() {\n return self.root.jbrowse\n },\n /**\n * #getter\n */\n get rpcManager() {\n return self.root.rpcManager\n },\n /**\n * #getter\n */\n get configuration(): Instance {\n return this.jbrowse.configuration\n },\n /**\n * #getter\n */\n get adminMode() {\n return self.root.adminMode\n },\n\n /**\n * #getter\n */\n get textSearchManager() {\n return self.root.textSearchManager\n },\n }))\n .views(self => ({\n /**\n * #getter\n */\n get assemblies(): Instance[] {\n return self.jbrowse.assemblies\n },\n }))\n .actions(self => ({\n /**\n * #action\n * set the global selection, i.e. the globally-selected object. can be a\n * feature, a view, just about anything\n */\n setSelection(thing: unknown) {\n self.selection = thing\n },\n\n /**\n * #action\n * clears the global selection\n */\n clearSelection() {\n self.selection = undefined\n },\n /**\n * #action\n */\n setHovered(thing: unknown) {\n self.hovered = thing\n },\n }))\n}\n\n/** Session mixin MST type for the most basic session */\nexport type BaseSessionType = ReturnType\n\n/** Instance of the most basic possible session */\nexport type BaseSession = Instance\n\n/** Type guard for BaseSession */\nexport function isBaseSession(thing: IAnyStateTreeNode): thing is BaseSession {\n return 'id' in thing && 'name' in thing && 'root' in thing\n}\n\n/** Type guard for whether a thing is JBrowse session */\nexport function isSession(thing: unknown): thing is BaseSession {\n return isStateTreeNode(thing) && isBaseSession(thing)\n}\n","import PluginManager from '@jbrowse/core/PluginManager'\nimport {\n AnyConfigurationModel,\n readConfObject,\n} from '@jbrowse/core/configuration'\nimport { IAnyStateTreeNode, Instance, types } from 'mobx-state-tree'\nimport { BaseConnectionConfigModel } from '@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig'\nimport { BaseConnectionModel } from '@jbrowse/core/pluggableElementTypes/models/BaseConnectionModelFactory'\n\n// locals\nimport type { BaseRootModelType } from '../RootModel/BaseRootModel'\nimport type { SessionWithReferenceManagementType } from './ReferenceManagement'\nimport { isBaseSession } from './BaseSession'\n\n/**\n * #stateModel ConnectionManagementSessionMixin\n */\nexport function ConnectionManagementSessionMixin(pluginManager: PluginManager) {\n return types\n .model({\n /**\n * #property\n */\n connectionInstances: types.array(\n pluginManager.pluggableMstType(\n 'connection',\n 'stateModel',\n ) as BaseConnectionModel,\n ),\n })\n .views(self => ({\n /**\n * #getter\n */\n get connections(): BaseConnectionConfigModel[] {\n const { jbrowse } = self as typeof self & Instance\n return jbrowse.connections\n },\n }))\n .actions(self => ({\n /**\n * #action\n */\n makeConnection(\n configuration: AnyConfigurationModel,\n initialSnapshot = {},\n ) {\n const type = configuration.type as string\n if (!type) {\n throw new Error('track configuration has no `type` listed')\n }\n const name = readConfObject(configuration, 'name')\n const connectionType = pluginManager.getConnectionType(type)\n if (!connectionType) {\n throw new Error(`unknown connection type ${type}`)\n }\n const length = self.connectionInstances.push({\n ...initialSnapshot,\n name,\n // @ts-expect-error unsure why ts doesn't like `type` here, but is\n // needed\n type,\n configuration,\n })\n return self.connectionInstances[length - 1]\n },\n\n /**\n * #action\n */\n prepareToBreakConnection(configuration: AnyConfigurationModel) {\n const root = self as typeof self &\n Instance\n const callbacksToDeref: (() => void)[] = []\n const derefTypeCount: Record = {}\n const name = readConfObject(configuration, 'name')\n const connection = self.connectionInstances.find(c => c.name === name)\n if (!connection) {\n return undefined\n }\n for (const track of connection.tracks) {\n const ref = root.getReferring(track)\n root.removeReferring(ref, track, callbacksToDeref, derefTypeCount)\n }\n return [\n () => {\n callbacksToDeref.forEach(cb => {\n cb()\n })\n this.breakConnection(configuration)\n },\n derefTypeCount,\n ]\n },\n\n /**\n * #action\n */\n breakConnection(configuration: AnyConfigurationModel) {\n const name = readConfObject(configuration, 'name')\n const connection = self.connectionInstances.find(c => c.name === name)\n if (!connection) {\n throw new Error(`no connection found with name ${name}`)\n }\n self.connectionInstances.remove(connection)\n },\n\n /**\n * #action\n */\n deleteConnection(configuration: AnyConfigurationModel) {\n const { jbrowse } = self as typeof self & Instance\n return jbrowse.deleteConnectionConf(configuration)\n },\n\n /**\n * #action\n */\n addConnectionConf(connectionConf: AnyConfigurationModel) {\n const { jbrowse } = self as typeof self & Instance\n return jbrowse.addConnectionConf(connectionConf)\n },\n\n /**\n * #action\n */\n clearConnections() {\n self.connectionInstances.clear()\n },\n }))\n}\n\n/** Session mixin MST type for a session that has connections */\nexport type SessionWithConnectionsType = ReturnType<\n typeof ConnectionManagementSessionMixin\n>\n\n/** Instance of a session that has connections: `connectionInstances`,\n * `makeConnection()`, etc. */\nexport type SessionWithConnections = Instance\n\n/** Type guard for SessionWithConnections */\nexport function isSessionWithConnections(\n session: IAnyStateTreeNode,\n): session is SessionWithConnections {\n return isBaseSession(session) && 'connectionInstances' in session\n}\n","import React, { Suspense } from 'react'\nimport { observer } from 'mobx-react'\nimport { ConfigurationEditor } from '@jbrowse/plugin-config'\nimport { ConnectionType } from '@jbrowse/core/pluggableElementTypes'\nimport { AnyConfigurationModel } from '@jbrowse/core/configuration'\nimport { AbstractSessionModel } from '@jbrowse/core/util'\nimport { LoadingEllipses } from '@jbrowse/core/ui'\n\nconst ConfigureConnection = observer(function ({\n connectionType,\n model,\n session,\n}: {\n connectionType: ConnectionType\n model: AnyConfigurationModel\n session: AbstractSessionModel\n}) {\n const ConfigEditorComponent =\n connectionType.configEditorComponent || ConfigurationEditor\n\n return (\n }>\n \n \n )\n})\n\nexport default ConfigureConnection\n","import React, { useEffect } from 'react'\nimport { IconButton, MenuItem, TextField } from '@mui/material'\nimport { ConnectionType } from '@jbrowse/core/pluggableElementTypes'\nimport { observer } from 'mobx-react'\n\n// icons\nimport OpenInNewIcon from '@mui/icons-material/OpenInNew'\n\nconst ConnectionTypeSelect = observer(function ConnectionTypeSelect({\n connectionTypeChoices,\n connectionType,\n setConnectionType,\n}: {\n connectionTypeChoices: ConnectionType[]\n connectionType?: ConnectionType\n setConnectionType: (c?: ConnectionType) => void\n}) {\n const firstChoice = connectionTypeChoices[0]\n useEffect(() => {\n if (!connectionType) {\n setConnectionType(firstChoice)\n }\n }, [connectionType, firstChoice, setConnectionType])\n\n return (\n

\n {connectionType ? (\n \n {connectionType.description}\n {connectionType.url ? (\n \n \n \n ) : null}\n \n ) : null\n }\n select\n fullWidth\n onChange={event => {\n setConnectionType(\n connectionTypeChoices.find(c => c.name === event.target.value),\n )\n }}\n variant=\"outlined\"\n >\n {connectionTypeChoices.map(c => (\n \n {c.displayName || c.name}\n \n ))}\n \n ) : null}\n \n )\n})\n\nexport default ConnectionTypeSelect\n","import React, { useMemo, useState } from 'react'\nimport { Button, Step, StepContent, StepLabel, Stepper } from '@mui/material'\nimport {\n getSession,\n getEnv,\n isSessionModelWithWidgets,\n} from '@jbrowse/core/util'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { ConnectionType } from '@jbrowse/core/pluggableElementTypes'\n\n// locals\nimport ConfigureConnection from './ConfigureConnection'\nimport ConnectionTypeSelect from './ConnectionTypeSelect'\nimport { isSessionWithConnections } from '@jbrowse/product-core'\n\nconst useStyles = makeStyles()(theme => ({\n root: {\n marginTop: theme.spacing(1),\n },\n stepper: {\n backgroundColor: theme.palette.background.default,\n },\n button: {\n marginTop: theme.spacing(1),\n marginRight: theme.spacing(1),\n },\n actionsContainer: {\n marginBottom: theme.spacing(2),\n },\n}))\n\nconst steps = ['Select a Connection Type', 'Configure Connection']\n\nconst AddConnectionWidget = observer(function ({ model }: { model: unknown }) {\n const [connectionType, setConnectionType] = useState()\n const [connectionId, setConnectionId] = useState()\n const [activeStep, setActiveStep] = useState(0)\n const { classes } = useStyles()\n const session = getSession(model)\n const { pluginManager } = getEnv(session)\n\n // useMemo is needed for react@18+mobx-react@9, previous code called configScema.create directly in a setConfigModel useState hook setter but this caused infinite loop\n const configModel = useMemo(\n () => connectionType?.configSchema.create({ connectionId }, getEnv(model)),\n [connectionId, connectionType, model],\n )\n\n return (\n

\n \n {steps.map(label => (\n \n {label}\n \n {activeStep === 0 ? (\n {\n setConnectionType(c)\n if (!c) {\n return\n }\n setConnectionId(`${c.name}-${Date.now()}`)\n }}\n />\n ) : connectionType && configModel ? (\n \n ) : null}\n

\n {\n setActiveStep(activeStep - 1)\n }}\n className={classes.button}\n >\n Back\n \n {\n if (activeStep === steps.length - 1) {\n if (configModel && isSessionWithConnections(session)) {\n const conf = session.addConnectionConf(configModel)\n session.makeConnection(conf)\n } else {\n session.notify('No config model to add')\n }\n\n if (isSessionModelWithWidgets(session)) {\n session.hideWidget(model)\n }\n } else {\n setActiveStep(activeStep + 1)\n }\n }}\n className={classes.button}\n data-testid=\"addConnectionNext\"\n >\n {activeStep === steps.length - 1 ? 'Connect' : 'Next'}\n \n

\n \n \n ))}\n \n

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{ Buffer } from 'buffer'\n//@ts-ignore\nimport { Z_SYNC_FLUSH, Inflate } from 'pako'\n\ninterface VirtualOffset {\n blockPosition: number\n dataPosition: number\n}\ninterface Chunk {\n minv: VirtualOffset\n maxv: VirtualOffset\n}\n\n// browserify-zlib, which is the zlib shim used by default in webpacked code,\n// does not properly uncompress bgzf chunks that contain more than\n// one bgzf block, so export an unzip function that uses pako directly\n// if we are running in a browser.\nasync function unzip(inputData: Buffer) {\n try {\n let strm\n let pos = 0\n let i = 0\n const chunks = []\n let totalSize = 0\n let inflator\n do {\n const remainingInput = inputData.subarray(pos)\n inflator = new Inflate()\n //@ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n pos += strm.next_in\n chunks[i] = inflator.result as Uint8Array\n totalSize += chunks[i].length\n i += 1\n } while (strm.avail_in)\n\n const result = new Uint8Array(totalSize)\n for (let i = 0, offset = 0; i < chunks.length; i++) {\n result.set(chunks[i], offset)\n offset += chunks[i].length\n }\n return Buffer.from(result)\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\n// similar to pakounzip, except it does extra counting\n// to return the positions of compressed and decompressed\n// data offsets\nasync function unzipChunk(inputData: Buffer) {\n try {\n let strm\n let cpos = 0\n let dpos = 0\n const blocks = []\n const cpositions = []\n const dpositions = []\n do {\n const remainingInput = inputData.slice(cpos)\n const inflator = new Inflate()\n // @ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n const buffer = Buffer.from(inflator.result)\n blocks.push(buffer)\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n\n cpos += strm.next_in\n dpos += buffer.length\n } while (strm.avail_in)\n\n const buffer = Buffer.concat(blocks)\n return { buffer, cpositions, dpositions }\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\n// similar to unzipChunk above but slices (0,minv.dataPosition) and\n// (maxv.dataPosition,end) off\nasync function unzipChunkSlice(inputData: Buffer, chunk: Chunk) {\n try {\n let strm\n const { minv, maxv } = chunk\n let cpos = minv.blockPosition\n let dpos = minv.dataPosition\n const chunks = []\n const cpositions = []\n const dpositions = []\n\n let totalSize = 0\n let i = 0\n do {\n const remainingInput = inputData.subarray(cpos - minv.blockPosition)\n const inflator = new Inflate()\n // @ts-ignore\n ;({ strm } = inflator)\n inflator.push(remainingInput, Z_SYNC_FLUSH)\n if (inflator.err) {\n throw new Error(inflator.msg)\n }\n\n const buffer = inflator.result\n chunks.push(buffer as Uint8Array)\n let len = buffer.length\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n if (chunks.length === 1 && minv.dataPosition) {\n // this is the first chunk, trim it\n chunks[0] = chunks[0].subarray(minv.dataPosition)\n len = chunks[0].length\n }\n const origCpos = cpos\n cpos += strm.next_in\n dpos += len\n\n if (origCpos >= maxv.blockPosition) {\n // this is the last chunk, trim it and stop decompressing\n // note if it is the same block is minv it subtracts that already\n // trimmed part of the slice length\n\n chunks[i] = chunks[i].subarray(\n 0,\n maxv.blockPosition === minv.blockPosition\n ? maxv.dataPosition - minv.dataPosition + 1\n : maxv.dataPosition + 1,\n )\n\n cpositions.push(cpos)\n dpositions.push(dpos)\n totalSize += chunks[i].length\n break\n }\n totalSize += chunks[i].length\n i++\n } while (strm.avail_in)\n\n const result = new Uint8Array(totalSize)\n for (let i = 0, offset = 0; i < chunks.length; i++) {\n result.set(chunks[i], offset)\n offset += chunks[i].length\n }\n const buffer = Buffer.from(result)\n\n return { buffer, cpositions, dpositions }\n } catch (e) {\n //cleanup error message\n if (`${e}`.match(/incorrect header check/)) {\n throw new Error(\n 'problem decompressing block: incorrect gzip header check',\n )\n }\n throw e\n }\n}\n\nfunction nodeUnzip() {\n throw new Error('nodeUnzip not implemented.')\n}\n\nexport { unzip, unzipChunk, unzipChunkSlice, unzip as pakoUnzip, nodeUnzip }\n","import Long from 'long'\nimport { Buffer } from 'buffer'\nimport { LocalFile, GenericFilehandle } from 'generic-filehandle'\n\n// const COMPRESSED_POSITION = 0\nconst UNCOMPRESSED_POSITION = 1\n\nexport default class GziIndex {\n filehandle: GenericFilehandle\n\n index?: any\n\n constructor({\n filehandle,\n path,\n }: {\n filehandle?: GenericFilehandle\n path?: string\n }) {\n if (filehandle) {\n this.filehandle = filehandle\n } else if (path) {\n this.filehandle = new LocalFile(path)\n } else {\n throw new TypeError('either filehandle or path must be defined')\n }\n }\n\n _readLongWithOverflow(buf: Buffer, offset = 0, unsigned = true) {\n //@ts-ignore\n const long = Long.fromBytesLE(buf.slice(offset, offset + 8), unsigned)\n if (\n long.greaterThan(Number.MAX_SAFE_INTEGER) ||\n long.lessThan(Number.MIN_SAFE_INTEGER)\n ) {\n throw new TypeError('integer overflow')\n }\n\n return long.toNumber()\n }\n\n _getIndex() {\n if (!this.index) {\n this.index = this._readIndex()\n }\n return this.index\n }\n\n async _readIndex() {\n let buf = Buffer.allocUnsafe(8)\n await this.filehandle.read(buf, 0, 8, 0)\n const numEntries = this._readLongWithOverflow(buf, 0, true)\n if (!numEntries) {\n return [[0, 0]]\n }\n\n const entries = new Array(numEntries + 1)\n entries[0] = [0, 0]\n\n // TODO rewrite this to make an index-index that stays in memory\n const bufSize = 8 * 2 * numEntries\n if (bufSize > Number.MAX_SAFE_INTEGER) {\n throw new TypeError('integer overflow')\n }\n buf = Buffer.allocUnsafe(bufSize)\n await this.filehandle.read(buf, 0, bufSize, 8)\n for (let entryNumber = 0; entryNumber < numEntries; entryNumber += 1) {\n const compressedPosition = this._readLongWithOverflow(\n buf,\n entryNumber * 16,\n )\n const uncompressedPosition = this._readLongWithOverflow(\n buf,\n entryNumber * 16 + 8,\n )\n entries[entryNumber + 1] = [compressedPosition, uncompressedPosition]\n }\n\n return entries\n }\n\n async getLastBlock() {\n const entries = await this._getIndex()\n if (!entries.length) {\n return undefined\n }\n return entries[entries.length - 1]\n }\n\n async getRelevantBlocksForRead(length: number, position: number) {\n const endPosition = position + length\n if (length === 0) {\n return []\n }\n const entries = await this._getIndex()\n const relevant = []\n\n // binary search to find the block that the\n // read starts in and extend forward from that\n const compare = (entry: any, nextEntry: any) => {\n const uncompressedPosition = entry[UNCOMPRESSED_POSITION]\n const nextUncompressedPosition = nextEntry\n ? nextEntry[UNCOMPRESSED_POSITION]\n : Infinity\n // block overlaps read start\n if (\n uncompressedPosition <= position &&\n nextUncompressedPosition > position\n ) {\n return 0\n // block is before read start\n }\n if (uncompressedPosition < position) {\n return -1\n }\n // block is after read start\n return 1\n }\n\n let lowerBound = 0\n let upperBound = entries.length - 1\n let searchPosition = Math.floor(entries.length / 2)\n\n let comparison = compare(\n entries[searchPosition],\n entries[searchPosition + 1],\n )\n while (comparison !== 0) {\n if (comparison > 0) {\n upperBound = searchPosition - 1\n } else if (comparison < 0) {\n lowerBound = searchPosition + 1\n }\n searchPosition = Math.ceil((upperBound - lowerBound) / 2) + lowerBound\n comparison = compare(entries[searchPosition], entries[searchPosition + 1])\n }\n\n // here's where we read forward\n relevant.push(entries[searchPosition])\n let i = searchPosition + 1\n for (; i < entries.length; i += 1) {\n relevant.push(entries[i])\n if (entries[i][UNCOMPRESSED_POSITION] >= endPosition) {\n break\n }\n }\n if (relevant[relevant.length - 1][UNCOMPRESSED_POSITION] < endPosition) {\n relevant.push([])\n }\n return relevant\n }\n}\n","import { Buffer } from 'buffer'\nimport { LocalFile, GenericFilehandle } from 'generic-filehandle'\n\n// locals\nimport { unzip } from './unzip'\nimport GziIndex from './gziIndex'\n\nexport default class BgzFilehandle {\n filehandle: GenericFilehandle\n gzi: GziIndex\n\n constructor({\n filehandle,\n path,\n gziFilehandle,\n gziPath,\n }: {\n filehandle?: GenericFilehandle\n path?: string\n gziFilehandle?: GenericFilehandle\n gziPath?: string\n }) {\n if (filehandle) {\n this.filehandle = filehandle\n } else if (path) {\n this.filehandle = new LocalFile(path)\n } else {\n throw new TypeError('either filehandle or path must be defined')\n }\n\n if (!gziFilehandle && !gziPath && !path) {\n throw new TypeError('either gziFilehandle or gziPath must be defined')\n }\n\n this.gzi = new GziIndex({\n filehandle: gziFilehandle,\n path: !gziFilehandle && !gziPath && path ? gziPath : `${path}.gzi`,\n })\n }\n\n async stat() {\n const compressedStat = await this.filehandle.stat()\n return Object.assign(compressedStat, {\n size: await this.getUncompressedFileSize(),\n blocks: undefined,\n blksize: undefined,\n })\n }\n\n async getUncompressedFileSize() {\n // read the last block's ISIZE (see gzip RFC),\n // and add it to its uncompressedPosition\n const [, uncompressedPosition] = await this.gzi.getLastBlock()\n\n const { size } = await this.filehandle.stat()\n\n const buf = Buffer.allocUnsafe(4)\n // note: there should be a 28-byte EOF marker (an empty block) at\n // the end of the file, so we skip backward past that\n const { bytesRead } = await this.filehandle.read(buf, 0, 4, size - 28 - 4)\n if (bytesRead !== 4) {\n throw new Error('read error')\n }\n const lastBlockUncompressedSize = buf.readUInt32LE(0)\n return uncompressedPosition + lastBlockUncompressedSize\n }\n\n async _readAndUncompressBlock(\n blockBuffer: Buffer,\n [compressedPosition]: [number],\n [nextCompressedPosition]: [number],\n ) {\n let next = nextCompressedPosition\n if (!next) {\n next = (await this.filehandle.stat()).size\n }\n\n // read the compressed data into the block buffer\n const blockCompressedLength = next - compressedPosition\n\n await this.filehandle.read(\n blockBuffer,\n 0,\n blockCompressedLength,\n compressedPosition,\n )\n\n // uncompress it\n const unzippedBuffer = await unzip(\n blockBuffer.slice(0, blockCompressedLength),\n )\n\n return unzippedBuffer as Buffer\n }\n\n async read(buf: Buffer, offset: number, length: number, position: number) {\n // get the block positions for this read\n const blockPositions = await this.gzi.getRelevantBlocksForRead(\n length,\n position,\n )\n const blockBuffer = Buffer.allocUnsafe(32768 * 2)\n // uncompress the blocks and read from them one at a time to keep memory usage down\n let destinationOffset = offset\n let bytesRead = 0\n for (\n let blockNum = 0;\n blockNum < blockPositions.length - 1;\n blockNum += 1\n ) {\n // eslint-disable-next-line no-await-in-loop\n const uncompressedBuffer = await this._readAndUncompressBlock(\n blockBuffer,\n blockPositions[blockNum],\n blockPositions[blockNum + 1],\n )\n const [, uncompressedPosition] = blockPositions[blockNum]\n const sourceOffset =\n uncompressedPosition >= position ? 0 : position - uncompressedPosition\n const sourceEnd =\n Math.min(\n position + length,\n uncompressedPosition + uncompressedBuffer.length,\n ) - uncompressedPosition\n if (sourceOffset >= 0 && sourceOffset < uncompressedBuffer.length) {\n uncompressedBuffer.copy(buf, destinationOffset, sourceOffset, sourceEnd)\n destinationOffset += sourceEnd - sourceOffset\n bytesRead += sourceEnd - sourceOffset\n }\n }\n\n return { bytesRead, buffer: buf }\n }\n}\n","/**\n * Created by Alex Bol on 4/1/2017.\n */\n\n/**\n * Interval is a pair of numbers or a pair of any comparable objects on which may be defined predicates\n * *equal*, *less* and method *max(p1, p1)* that returns maximum in a pair.\n * When interval is an object rather than a pair of numbers, this object should have properties *low*, *high*, *max*\n * and implement methods *less_than(), equal_to(), intersect(), not_intersect(), clone(), output()*.\n * Two static methods *comparable_max(), comparable_less_than()* define how to compare values in pair.
\n * This interface is described in typescript definition file *index.d.ts*\n *\n * Axis aligned rectangle is an example of such interval.\n * We may look at rectangle as an interval between its low left and top right corners.\n * See **Box** class in [flatten-js](https://github.com/alexbol99/flatten-js) library as the example\n * of Interval interface implementation\n * @type {Interval}\n */\nconst Interval = class Interval {\n /**\n * Accept two comparable values and creates new instance of interval\n * Predicate Interval.comparable_less(low, high) supposed to return true on these values\n * @param low\n * @param high\n */\n constructor(low, high) {\n this.low = low;\n this.high = high;\n }\n\n /**\n * Clone interval\n * @returns {Interval}\n */\n clone() {\n return new Interval(this.low, this.high);\n }\n\n /**\n * Propery max returns clone of this interval\n * @returns {Interval}\n */\n get max() {\n return this.clone(); // this.high;\n }\n\n /**\n * Predicate returns true is this interval less than other interval\n * @param other_interval\n * @returns {boolean}\n */\n less_than(other_interval) {\n return this.low < other_interval.low ||\n this.low === other_interval.low && this.high < other_interval.high;\n }\n\n /**\n * Predicate returns true is this interval equals to other interval\n * @param other_interval\n * @returns {boolean}\n */\n equal_to(other_interval) {\n return this.low === other_interval.low && this.high === other_interval.high;\n }\n\n /**\n * Predicate returns true if this interval intersects other interval\n * @param other_interval\n * @returns {boolean}\n */\n intersect(other_interval) {\n return !this.not_intersect(other_interval);\n }\n\n /**\n * Predicate returns true if this interval does not intersect other interval\n * @param other_interval\n * @returns {boolean}\n */\n not_intersect(other_interval) {\n return (this.high < other_interval.low || other_interval.high < this.low);\n }\n\n /**\n * Returns new interval merged with other interval\n * @param {Interval} other_interval - Other interval to merge with\n * @returns {Interval}\n */\n merge(other_interval) {\n return new Interval(\n this.low === undefined ?\n other_interval.low : (this.low < other_interval.low ? this.low : other_interval.low),\n this.high === undefined ?\n other_interval.high : (this.high > other_interval.high ? this.high : other_interval.high)\n );\n }\n\n /**\n * Returns how key should return\n */\n output() {\n return [this.low, this.high];\n }\n\n /**\n * Function returns maximum between two comparable values\n * @param interval1\n * @param interval2\n * @returns {Interval}\n */\n static comparable_max(interval1, interval2) {\n return interval1.merge(interval2);\n }\n\n /**\n * Predicate returns true if first value less than second value\n * @param val1\n * @param val2\n * @returns {boolean}\n */\n static comparable_less_than(val1, val2 ) {\n return val1 < val2;\n }\n};\n\n/**\n * Created by Alex Bol on 3/28/2017.\n */\n\n\n// module.exports = {\n// RB_TREE_COLOR_RED: 0,\n// RB_TREE_COLOR_BLACK: 1\n// };\n\nconst RB_TREE_COLOR_RED = 0;\nconst RB_TREE_COLOR_BLACK = 1;\n\n/**\n * Created by Alex Bol on 4/1/2017.\n */\n\n\nclass Node {\n constructor(key = undefined, value = undefined,\n left = null, right = null, parent = null, color = RB_TREE_COLOR_BLACK) {\n this.left = left; // reference to left child node\n this.right = right; // reference to right child node\n this.parent = parent; // reference to parent node\n this.color = color;\n\n this.item = {key: key, value: value}; // key is supposed to be instance of Interval\n\n /* If not, this should by an array of two numbers */\n if (key && key instanceof Array && key.length === 2) {\n if (!Number.isNaN(key[0]) && !Number.isNaN(key[1])) {\n let [low, high] = key;\n if (low > high) [low, high] = [high, low];\n this.item.key = new Interval(low, high);\n }\n }\n\n this.max = this.item.key ? this.item.key.max : undefined;\n }\n\n isNil() {\n return (this.item.key === undefined && this.item.value === undefined &&\n this.left === null && this.right === null && this.color === RB_TREE_COLOR_BLACK);\n }\n\n _value_less_than(other_node) {\n return this.item.value && other_node.item.value && this.item.value.less_than ?\n this.item.value.less_than(other_node.item.value) :\n this.item.value < other_node.item.value;\n }\n\n less_than(other_node) {\n // if tree stores only keys\n if (this.item.value === this.item.key && other_node.item.value === other_node.item.key) {\n return this.item.key.less_than(other_node.item.key);\n }\n else { // if tree stores keys and values\n return this.item.key.less_than(other_node.item.key) ||\n this.item.key.equal_to((other_node.item.key)) && this._value_less_than(other_node)\n }\n }\n\n _value_equal(other_node) {\n return this.item.value && other_node.item.value && this.item.value.equal_to ?\n this.item.value.equal_to(other_node.item.value) :\n this.item.value === other_node.item.value;\n }\n equal_to(other_node) {\n // if tree stores only keys\n if (this.item.value === this.item.key && other_node.item.value === other_node.item.key) {\n return this.item.key.equal_to(other_node.item.key);\n }\n else { // if tree stores keys and values\n return this.item.key.equal_to(other_node.item.key) && this._value_equal(other_node);\n }\n }\n\n intersect(other_node) {\n return this.item.key.intersect(other_node.item.key);\n }\n\n copy_data(other_node) {\n this.item.key = other_node.item.key;\n this.item.value = other_node.item.value;\n }\n\n update_max() {\n // use key (Interval) max property instead of key.high\n this.max = this.item.key ? this.item.key.max : undefined;\n if (this.right && this.right.max) {\n const comparable_max = this.item.key.constructor.comparable_max; // static method\n this.max = comparable_max(this.max, this.right.max);\n }\n if (this.left && this.left.max) {\n const comparable_max = this.item.key.constructor.comparable_max; // static method\n this.max = comparable_max(this.max, this.left.max);\n }\n }\n\n // Other_node does not intersect any node of left subtree, if this.left.max < other_node.item.key.low\n not_intersect_left_subtree(search_node) {\n const comparable_less_than = this.item.key.constructor.comparable_less_than; // static method\n let high = this.left.max.high !== undefined ? this.left.max.high : this.left.max;\n return comparable_less_than(high, search_node.item.key.low);\n }\n\n // Other_node does not intersect right subtree if other_node.item.key.high < this.right.key.low\n not_intersect_right_subtree(search_node) {\n const comparable_less_than = this.item.key.constructor.comparable_less_than; // static method\n let low = this.right.max.low !== undefined ? this.right.max.low : this.right.item.key.low;\n return comparable_less_than(search_node.item.key.high, low);\n }\n}\n\n/**\n * Created by Alex Bol on 3/31/2017.\n */\n\n// const nil_node = new Node();\n\n/**\n * Implementation of interval binary search tree
\n * Interval tree stores items which are couples of {key:interval, value: value}
\n * Interval is an object with high and low properties or simply pair [low,high] of numeric values
\n * @type {IntervalTree}\n */\nclass IntervalTree {\n /**\n * Construct new empty instance of IntervalTree\n */\n constructor() {\n this.root = null;\n this.nil_node = new Node();\n }\n\n /**\n * Returns number of items stored in the interval tree\n * @returns {number}\n */\n get size() {\n let count = 0;\n this.tree_walk(this.root, () => count++);\n return count;\n }\n\n /**\n * Returns array of sorted keys in the ascending order\n * @returns {Array}\n */\n get keys() {\n let res = [];\n this.tree_walk(this.root, (node) => res.push(\n node.item.key.output ? node.item.key.output() : node.item.key\n ));\n return res;\n }\n\n /**\n * Return array of values in the ascending keys order\n * @returns {Array}\n */\n get values() {\n let res = [];\n this.tree_walk(this.root, (node) => res.push(node.item.value));\n return res;\n }\n\n /**\n * Returns array of items ( pairs) in the ascended keys order\n * @returns {Array}\n */\n get items() {\n let res = [];\n this.tree_walk(this.root, (node) => res.push({\n key: node.item.key.output ? node.item.key.output() : node.item.key,\n value: node.item.value\n }));\n return res;\n }\n\n /**\n * Returns true if tree is empty\n * @returns {boolean}\n */\n isEmpty() {\n return (this.root == null || this.root === this.nil_node);\n }\n\n /**\n * Clear tree\n */\n clear() {\n this.root = null;\n }\n\n /**\n * Insert new item into interval tree\n * @param {Interval} key - interval object or array of two numbers [low, high]\n * @param {any} value - value representing any object (optional)\n * @returns {Node} returns reference to inserted node as an object {key:interval, value: value}\n */\n insert(key, value = key) {\n if (key === undefined) return;\n let insert_node = new Node(key, value, this.nil_node, this.nil_node, null, RB_TREE_COLOR_RED);\n this.tree_insert(insert_node);\n this.recalc_max(insert_node);\n return insert_node;\n }\n\n /**\n * Returns true if item {key,value} exist in the tree\n * @param {Interval} key - interval correspondent to keys stored in the tree\n * @param {any} value - value object to be checked\n * @returns {boolean} true if item {key, value} exist in the tree, false otherwise\n */\n exist(key, value = key) {\n let search_node = new Node(key, value);\n return !!this.tree_search(this.root, search_node);\n }\n\n /**\n * Remove entry {key, value} from the tree\n * @param {Interval} key - interval correspondent to keys stored in the tree\n * @param {any} value - value object\n * @returns {boolean} true if item {key, value} deleted, false if not found\n */\n remove(key, value = key) {\n let search_node = new Node(key, value);\n let delete_node = this.tree_search(this.root, search_node);\n if (delete_node) {\n this.tree_delete(delete_node);\n }\n return delete_node;\n }\n\n /**\n * Returns array of entry values which keys intersect with given interval
\n * If no values stored in the tree, returns array of keys which intersect given interval\n * @param {Interval} interval - search interval, or tuple [low, high]\n * @param outputMapperFn(value,key) - optional function that maps (value, key) to custom output\n * @returns {Array}\n */\n search(interval, outputMapperFn = (value, key) => value === key ? key.output() : value) {\n let search_node = new Node(interval);\n let resp_nodes = [];\n this.tree_search_interval(this.root, search_node, resp_nodes);\n return resp_nodes.map(node => outputMapperFn(node.item.value, node.item.key))\n }\n\n /**\n * Returns true if intersection between given and any interval stored in the tree found\n * @param {Interval} interval - search interval or tuple [low, high]\n * @returns {boolean}\n */\n intersect_any(interval) {\n let search_node = new Node(interval);\n return this.tree_find_any_interval(this.root, search_node);\n }\n\n /**\n * Tree visitor. For each node implement a callback function.
\n * Method calls a callback function with two parameters (key, value)\n * @param visitor(key,value) - function to be called for each tree item\n */\n forEach(visitor) {\n this.tree_walk(this.root, (node) => visitor(node.item.key, node.item.value));\n }\n\n /**\n * Value Mapper. Walk through every node and map node value to another value\n * @param callback(value,key) - function to be called for each tree item\n */\n map(callback) {\n const tree = new IntervalTree();\n this.tree_walk(this.root, (node) => tree.insert(node.item.key, callback(node.item.value, node.item.key)));\n return tree;\n }\n\n /**\n * @param {Interval} interval - optional if the iterator is intended to start from the beginning\n * @param outputMapperFn(value,key) - optional function that maps (value, key) to custom output\n * @returns {Iterator}\n */\n *iterate(interval, outputMapperFn = (value, key) => value === key ? key.output() : value) {\n let node;\n if (interval) {\n node = this.tree_search_nearest_forward(this.root, new Node(interval));\n } else if (this.root) {\n node = this.local_minimum(this.root);\n }\n while (node) {\n yield outputMapperFn(node.item.value, node.item.key);\n node = this.tree_successor(node);\n }\n }\n\n recalc_max(node) {\n let node_current = node;\n while (node_current.parent != null) {\n node_current.parent.update_max();\n node_current = node_current.parent;\n }\n }\n\n tree_insert(insert_node) {\n let current_node = this.root;\n let parent_node = null;\n\n if (this.root == null || this.root === this.nil_node) {\n this.root = insert_node;\n }\n else {\n while (current_node !== this.nil_node) {\n parent_node = current_node;\n if (insert_node.less_than(current_node)) {\n current_node = current_node.left;\n }\n else {\n current_node = current_node.right;\n }\n }\n\n insert_node.parent = parent_node;\n\n if (insert_node.less_than(parent_node)) {\n parent_node.left = insert_node;\n }\n else {\n parent_node.right = insert_node;\n }\n }\n\n this.insert_fixup(insert_node);\n }\n\n// After insertion insert_node may have red-colored parent, and this is a single possible violation\n// Go upwords to the root and re-color until violation will be resolved\n insert_fixup(insert_node) {\n let current_node;\n let uncle_node;\n\n current_node = insert_node;\n while (current_node !== this.root && current_node.parent.color === RB_TREE_COLOR_RED) {\n if (current_node.parent === current_node.parent.parent.left) { // parent is left child of grandfather\n uncle_node = current_node.parent.parent.right; // right brother of parent\n if (uncle_node.color === RB_TREE_COLOR_RED) { // Case 1. Uncle is red\n // re-color father and uncle into black\n current_node.parent.color = RB_TREE_COLOR_BLACK;\n uncle_node.color = RB_TREE_COLOR_BLACK;\n current_node.parent.parent.color = RB_TREE_COLOR_RED;\n current_node = current_node.parent.parent;\n }\n else { // Case 2 & 3. Uncle is black\n if (current_node === current_node.parent.right) { // Case 2. Current if right child\n // This case is transformed into Case 3.\n current_node = current_node.parent;\n this.rotate_left(current_node);\n }\n current_node.parent.color = RB_TREE_COLOR_BLACK; // Case 3. Current is left child.\n // Re-color father and grandfather, rotate grandfather right\n current_node.parent.parent.color = RB_TREE_COLOR_RED;\n this.rotate_right(current_node.parent.parent);\n }\n }\n else { // parent is right child of grandfather\n uncle_node = current_node.parent.parent.left; // left brother of parent\n if (uncle_node.color === RB_TREE_COLOR_RED) { // Case 4. Uncle is red\n // re-color father and uncle into black\n current_node.parent.color = RB_TREE_COLOR_BLACK;\n uncle_node.color = RB_TREE_COLOR_BLACK;\n current_node.parent.parent.color = RB_TREE_COLOR_RED;\n current_node = current_node.parent.parent;\n }\n else {\n if (current_node === current_node.parent.left) { // Case 5. Current is left child\n // Transform into case 6\n current_node = current_node.parent;\n this.rotate_right(current_node);\n }\n current_node.parent.color = RB_TREE_COLOR_BLACK; // Case 6. Current is right child.\n // Re-color father and grandfather, rotate grandfather left\n current_node.parent.parent.color = RB_TREE_COLOR_RED;\n this.rotate_left(current_node.parent.parent);\n }\n }\n }\n\n this.root.color = RB_TREE_COLOR_BLACK;\n }\n\n tree_delete(delete_node) {\n let cut_node; // node to be cut - either delete_node or successor_node (\"y\" from 14.4)\n let fix_node; // node to fix rb tree property (\"x\" from 14.4)\n\n if (delete_node.left === this.nil_node || delete_node.right === this.nil_node) { // delete_node has less then 2 children\n cut_node = delete_node;\n }\n else { // delete_node has 2 children\n cut_node = this.tree_successor(delete_node);\n }\n\n // fix_node if single child of cut_node\n if (cut_node.left !== this.nil_node) {\n fix_node = cut_node.left;\n }\n else {\n fix_node = cut_node.right;\n }\n\n // remove cut_node from parent\n /*if (fix_node != this.nil_node) {*/\n fix_node.parent = cut_node.parent;\n /*}*/\n\n if (cut_node === this.root) {\n this.root = fix_node;\n }\n else {\n if (cut_node === cut_node.parent.left) {\n cut_node.parent.left = fix_node;\n }\n else {\n cut_node.parent.right = fix_node;\n }\n cut_node.parent.update_max(); // update max property of the parent\n }\n\n this.recalc_max(fix_node); // update max property upward from fix_node to root\n\n // COPY DATA !!!\n // Delete_node becomes cut_node, it means that we cannot hold reference\n // to node in outer structure and we will have to delete by key, additional search need\n if (cut_node !== delete_node) {\n delete_node.copy_data(cut_node);\n delete_node.update_max(); // update max property of the cut node at the new place\n this.recalc_max(delete_node); // update max property upward from delete_node to root\n }\n\n if (/*fix_node != this.nil_node && */cut_node.color === RB_TREE_COLOR_BLACK) {\n this.delete_fixup(fix_node);\n }\n }\n\n delete_fixup(fix_node) {\n let current_node = fix_node;\n let brother_node;\n\n while (current_node !== this.root && current_node.parent != null && current_node.color === RB_TREE_COLOR_BLACK) {\n if (current_node === current_node.parent.left) { // fix node is left child\n brother_node = current_node.parent.right;\n if (brother_node.color === RB_TREE_COLOR_RED) { // Case 1. Brother is red\n brother_node.color = RB_TREE_COLOR_BLACK; // re-color brother\n current_node.parent.color = RB_TREE_COLOR_RED; // re-color father\n this.rotate_left(current_node.parent);\n brother_node = current_node.parent.right; // update brother\n }\n // Derive to cases 2..4: brother is black\n if (brother_node.left.color === RB_TREE_COLOR_BLACK &&\n brother_node.right.color === RB_TREE_COLOR_BLACK) { // case 2: both nephews black\n brother_node.color = RB_TREE_COLOR_RED; // re-color brother\n current_node = current_node.parent; // continue iteration\n }\n else {\n if (brother_node.right.color === RB_TREE_COLOR_BLACK) { // case 3: left nephew red, right nephew black\n brother_node.color = RB_TREE_COLOR_RED; // re-color brother\n brother_node.left.color = RB_TREE_COLOR_BLACK; // re-color nephew\n this.rotate_right(brother_node);\n brother_node = current_node.parent.right; // update brother\n // Derive to case 4: left nephew black, right nephew red\n }\n // case 4: left nephew black, right nephew red\n brother_node.color = current_node.parent.color;\n current_node.parent.color = RB_TREE_COLOR_BLACK;\n brother_node.right.color = RB_TREE_COLOR_BLACK;\n this.rotate_left(current_node.parent);\n current_node = this.root; // exit from loop\n }\n }\n else { // fix node is right child\n brother_node = current_node.parent.left;\n if (brother_node.color === RB_TREE_COLOR_RED) { // Case 1. Brother is red\n brother_node.color = RB_TREE_COLOR_BLACK; // re-color brother\n current_node.parent.color = RB_TREE_COLOR_RED; // re-color father\n this.rotate_right(current_node.parent);\n brother_node = current_node.parent.left; // update brother\n }\n // Go to cases 2..4\n if (brother_node.left.color === RB_TREE_COLOR_BLACK &&\n brother_node.right.color === RB_TREE_COLOR_BLACK) { // case 2\n brother_node.color = RB_TREE_COLOR_RED; // re-color brother\n current_node = current_node.parent; // continue iteration\n }\n else {\n if (brother_node.left.color === RB_TREE_COLOR_BLACK) { // case 3: right nephew red, left nephew black\n brother_node.color = RB_TREE_COLOR_RED; // re-color brother\n brother_node.right.color = RB_TREE_COLOR_BLACK; // re-color nephew\n this.rotate_left(brother_node);\n brother_node = current_node.parent.left; // update brother\n // Derive to case 4: right nephew black, left nephew red\n }\n // case 4: right nephew black, left nephew red\n brother_node.color = current_node.parent.color;\n current_node.parent.color = RB_TREE_COLOR_BLACK;\n brother_node.left.color = RB_TREE_COLOR_BLACK;\n this.rotate_right(current_node.parent);\n current_node = this.root; // force exit from loop\n }\n }\n }\n\n current_node.color = RB_TREE_COLOR_BLACK;\n }\n\n tree_search(node, search_node) {\n if (node == null || node === this.nil_node)\n return undefined;\n\n if (search_node.equal_to(node)) {\n return node;\n }\n if (search_node.less_than(node)) {\n return this.tree_search(node.left, search_node);\n }\n else {\n return this.tree_search(node.right, search_node);\n }\n }\n\n tree_search_nearest_forward(node, search_node) {\n let best;\n let curr = node;\n while (curr && curr !== this.nil_node) {\n if (curr.less_than(search_node)) {\n if (curr.intersect(search_node)) {\n best = curr;\n curr = curr.left;\n } else {\n curr = curr.right;\n }\n } else {\n if (!best || curr.less_than(best)) best = curr;\n curr = curr.left;\n }\n }\n return best || null;\n }\n\n // 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this.tree_find_any_interval(node.left, search_node);\n }\n if (!found) {\n found = node.intersect(search_node);\n }\n if (!found && node.right !== this.nil_node && !node.not_intersect_right_subtree(search_node)) {\n found = this.tree_find_any_interval(node.right, search_node);\n }\n }\n return found;\n }\n\n local_minimum(node) {\n let node_min = node;\n while (node_min.left != null && node_min.left !== this.nil_node) {\n node_min = node_min.left;\n }\n return node_min;\n }\n\n // not in use\n local_maximum(node) {\n let node_max = node;\n while (node_max.right != null && node_max.right !== this.nil_node) {\n node_max = node_max.right;\n }\n return node_max;\n }\n\n tree_successor(node) {\n let node_successor;\n let current_node;\n let parent_node;\n\n if (node.right !== this.nil_node) {\n node_successor = this.local_minimum(node.right);\n }\n else {\n current_node = node;\n parent_node = node.parent;\n while (parent_node != null && parent_node.right === current_node) {\n current_node = parent_node;\n parent_node = parent_node.parent;\n }\n node_successor = parent_node;\n }\n return node_successor;\n }\n\n // | right-rotate(T,y) |\n // y ---------------. x\n // / \\ / \\\n // x c left-rotate(T,x) a y\n // / \\ <--------------- / \\\n // a b b c\n\n rotate_left(x) {\n let y = x.right;\n\n x.right = y.left; // b goes to x.right\n\n if (y.left !== this.nil_node) {\n y.left.parent = x; // x becomes parent of b\n }\n y.parent = x.parent; // move parent\n\n if (x === this.root) {\n this.root = y; // y becomes root\n }\n else { // y becomes child of x.parent\n if (x === x.parent.left) {\n x.parent.left = y;\n }\n else {\n x.parent.right = y;\n }\n }\n y.left = x; // x becomes left child of y\n x.parent = y; // and y becomes parent of x\n\n if (x != null && x !== this.nil_node) {\n x.update_max();\n }\n\n y = x.parent;\n if (y != null && y !== this.nil_node) {\n y.update_max();\n }\n }\n\n rotate_right(y) {\n let x = y.left;\n\n y.left = x.right; // b goes to y.left\n\n if (x.right !== this.nil_node) {\n x.right.parent = y; // y becomes parent of b\n }\n x.parent = y.parent; // move parent\n\n if (y === this.root) { // x becomes root\n this.root = x;\n }\n else { // y becomes child of x.parent\n if (y === y.parent.left) {\n y.parent.left = x;\n }\n else {\n y.parent.right = x;\n }\n }\n x.right = y; // y becomes right child of x\n y.parent = x; // and x becomes parent of y\n\n if (y !== null && y !== this.nil_node) {\n y.update_max();\n }\n\n x = y.parent;\n if (x != null && x !== this.nil_node) {\n x.update_max();\n }\n }\n\n tree_walk(node, action) {\n if (node != null && node !== this.nil_node) {\n this.tree_walk(node.left, action);\n // arr.push(node.toArray());\n action(node);\n this.tree_walk(node.right, action);\n }\n }\n\n /* Return true if all red nodes have exactly two black child nodes */\n testRedBlackProperty() {\n let res = true;\n this.tree_walk(this.root, function (node) {\n if (node.color === RB_TREE_COLOR_RED) {\n if (!(node.left.color === RB_TREE_COLOR_BLACK && node.right.color === RB_TREE_COLOR_BLACK)) {\n res = false;\n }\n }\n });\n return res;\n }\n\n /* Throw error if not every path from root to bottom has same black height */\n testBlackHeightProperty(node) {\n let height = 0;\n let heightLeft = 0;\n let heightRight = 0;\n if (node.color === RB_TREE_COLOR_BLACK) {\n height++;\n }\n if (node.left !== this.nil_node) {\n heightLeft = this.testBlackHeightProperty(node.left);\n }\n else {\n heightLeft = 1;\n }\n if (node.right !== this.nil_node) {\n heightRight = this.testBlackHeightProperty(node.right);\n }\n else {\n heightRight = 1;\n }\n if (heightLeft !== heightRight) {\n throw new Error('Red-black height property violated');\n }\n height += heightLeft;\n return height;\n }\n}\n\nexport { Interval, Node, IntervalTree as default 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React from 'react'\nimport { Checkbox, FormControlLabel } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n\nconst useStyles = makeStyles()({\n block: {\n display: 'block',\n },\n})\n\nexport default function Checkbox2({\n checked,\n disabled,\n label,\n onChange,\n}: {\n checked: boolean\n disabled?: boolean\n label: string\n onChange: (event: React.ChangeEvent) => void\n}) {\n const { classes } = useStyles()\n return (\n }\n label={label}\n />\n )\n}\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { Button, DialogActions, DialogContent } from '@mui/material'\nimport { getSnapshot } from 'mobx-state-tree'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { when } from 'mobx'\nimport { getSession, Feature } from '@jbrowse/core/util'\nimport type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport type { Assembly } from '@jbrowse/core/assemblyManager/assembly'\n\n// locals\nimport Checkbox2 from './Checkbox2'\n\ninterface Display {\n id: string\n [key: string]: unknown\n}\ninterface Track {\n id: string\n displays: Display[]\n [key: string]: unknown\n}\n\nfunction stripIds(arr: Track[]) {\n return arr.map(({ id, displays, ...rest }) => ({\n ...rest,\n displays: displays.map(({ id, ...rest }) => rest),\n }))\n}\n\nconst BreakendMultiLevelOptionDialog = observer(function ({\n model,\n handleClose,\n feature,\n assemblyName,\n viewType,\n view,\n}: {\n model: unknown\n handleClose: () => void\n feature: Feature\n view: LinearGenomeViewModel\n assemblyName: string\n viewType: {\n getBreakendCoveringRegions: (arg: {\n feature: Feature\n assembly: Assembly\n }) => {\n pos: number\n refName: string\n mateRefName: string\n matePos: number\n }\n }\n}) {\n const [copyTracks, setCopyTracks] = useState(true)\n const [mirror, setMirror] = useState(true)\n\n return (\n \n \n {\n setCopyTracks(event.target.checked)\n }}\n />\n\n {copyTracks ? (\n {\n setMirror(event.target.checked)\n }}\n />\n ) : null}\n \n \n {\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n ;(async () => {\n const session = getSession(model)\n try {\n const asm =\n await session.assemblyManager.waitForAssembly(assemblyName)\n if (!asm) {\n throw new Error(`assembly ${assemblyName} not found`)\n }\n\n const { refName, pos, mateRefName, matePos } =\n viewType.getBreakendCoveringRegions({\n feature,\n assembly: asm,\n })\n\n const viewTracks = getSnapshot(view.tracks) as Track[]\n const breakpointSplitView = session.addView(\n 'BreakpointSplitView',\n {\n type: 'BreakpointSplitView',\n displayName: `${\n feature.get('name') || feature.get('id') || 'breakend'\n } split detail`,\n\n views: [\n {\n type: 'LinearGenomeView',\n hideHeader: true,\n tracks: stripIds(getSnapshot(view.tracks)),\n },\n {\n type: 'LinearGenomeView',\n hideHeader: true,\n tracks: stripIds(\n mirror ? [...viewTracks].reverse() : viewTracks,\n ),\n },\n ],\n },\n ) as unknown as { views: LinearGenomeViewModel[] }\n const r1 = asm.regions!.find(r => r.refName === refName)\n const r2 = asm.regions!.find(r => r.refName === mateRefName)\n if (!r1 || !r2) {\n throw new Error(\"can't find regions\")\n }\n await Promise.all([\n breakpointSplitView.views[0]!.navToLocations([\n {\n refName,\n start: r1.start,\n end: pos,\n assemblyName,\n },\n {\n refName,\n start: pos + 1,\n end: r1.end,\n assemblyName,\n },\n ]),\n breakpointSplitView.views[1]!.navToLocations([\n {\n refName: mateRefName,\n start: r2.start,\n end: matePos,\n assemblyName,\n },\n {\n refName: mateRefName,\n start: matePos + 1,\n end: r2.end,\n assemblyName,\n },\n ]),\n ])\n await when(\n () =>\n breakpointSplitView.views[1]!.initialized &&\n breakpointSplitView.views[0]!.initialized,\n )\n breakpointSplitView.views[1]!.zoomTo(10)\n breakpointSplitView.views[0]!.zoomTo(10)\n breakpointSplitView.views[1]!.centerAt(matePos, mateRefName)\n breakpointSplitView.views[0]!.centerAt(pos, refName)\n } catch (e) {\n console.error(e)\n session.notify(`${e}`)\n }\n })()\n handleClose()\n }}\n variant=\"contained\"\n color=\"primary\"\n autoFocus\n >\n OK\n \n {\n handleClose()\n }}\n >\n Cancel\n \n \n \n )\n})\n\nexport default BreakendMultiLevelOptionDialog\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { Button, DialogActions, DialogContent, TextField } from '@mui/material'\nimport { getSnapshot } from 'mobx-state-tree'\nimport { Dialog } from '@jbrowse/core/ui'\nimport {\n getSession,\n Feature,\n gatherOverlaps,\n useLocalStorage,\n} from '@jbrowse/core/util'\nimport type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport type { Assembly } from '@jbrowse/core/assemblyManager/assembly'\n\n// locals\nimport Checkbox2 from './Checkbox2'\n\ninterface Display {\n id: string\n [key: string]: unknown\n}\ninterface Track {\n id: string\n displays: Display[]\n [key: string]: unknown\n}\n\nfunction stripIds(arr: Track[]) {\n return arr.map(({ id, displays, ...rest }) => ({\n ...rest,\n displays: displays.map(({ id, ...rest }) => rest),\n }))\n}\n\nconst BreakendSingleLevelOptionDialog = observer(function ({\n model,\n handleClose,\n feature,\n assemblyName,\n viewType,\n view,\n}: {\n model: unknown\n handleClose: () => void\n feature: Feature\n view: LinearGenomeViewModel\n assemblyName: string\n viewType: {\n getBreakendCoveringRegions: (arg: {\n feature: Feature\n assembly: Assembly\n }) => {\n pos: number\n refName: string\n mateRefName: string\n matePos: number\n }\n }\n}) {\n const [copyTracks, setCopyTracks] = useState(true)\n const [windowSize, setWindowSize] = useLocalStorage(\n 'breakpointWindowSize',\n '5000',\n )\n\n return (\n \n \n {\n setCopyTracks(event.target.checked)\n }}\n />\n\n {\n setWindowSize(event.target.value)\n }}\n />\n \n \n {\n const session = getSession(model)\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n ;(async () => {\n try {\n const assembly = session.assemblyManager.get(assemblyName)\n const w = +windowSize\n if (Number.isNaN(w)) {\n throw new Error('windowSize not a number')\n }\n const { refName, pos, mateRefName, matePos } =\n // @ts-expect-error\n viewType.getBreakendCoveringRegions({ feature, assembly })\n\n const breakpointSplitView = session.addView(\n 'BreakpointSplitView',\n {\n type: 'BreakpointSplitView',\n displayName: `${\n feature.get('name') || feature.get('id') || 'breakend'\n } split detail`,\n views: [\n {\n type: 'LinearGenomeView',\n tracks: stripIds(getSnapshot(view.tracks)),\n },\n ],\n },\n ) as unknown as { views: LinearGenomeViewModel[] }\n\n await breakpointSplitView.views[0]!.navToLocations(\n gatherOverlaps(\n [\n {\n refName,\n start: Math.max(0, pos - w),\n end: pos + w,\n assemblyName,\n },\n {\n refName: mateRefName,\n start: Math.max(0, matePos - w),\n end: matePos + w,\n assemblyName,\n },\n ],\n w,\n ),\n )\n } catch (e) {\n console.error(e)\n session.notify(`${e}`)\n }\n })()\n handleClose()\n }}\n variant=\"contained\"\n color=\"primary\"\n autoFocus\n >\n OK\n \n {\n handleClose()\n }}\n >\n Cancel\n \n \n \n )\n})\n\nexport default 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{\n name: 'MuiLink',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[`underline${capitalize(ownerState.underline)}`], ownerState.component === 'button' && styles.button];\n }\n})(memoTheme(({\n theme\n}) => {\n return {\n variants: [{\n props: {\n underline: 'none'\n },\n style: {\n textDecoration: 'none'\n }\n }, {\n props: {\n underline: 'hover'\n },\n style: {\n textDecoration: 'none',\n '&:hover': {\n textDecoration: 'underline'\n }\n }\n }, {\n props: {\n underline: 'always'\n },\n style: {\n textDecoration: 'underline',\n '&:hover': {\n textDecorationColor: 'inherit'\n }\n }\n }, {\n props: ({\n underline,\n ownerState\n }) => underline === 'always' && ownerState.color !== 'inherit',\n style: {\n textDecorationColor: 'var(--Link-underlineColor)'\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n underline: 'always',\n color\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / 0.4)` : alpha(theme.palette[color].main, 0.4)\n }\n })), {\n props: {\n underline: 'always',\n color: 'textPrimary'\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette.text.primaryChannel} / 0.4)` : alpha(theme.palette.text.primary, 0.4)\n }\n }, {\n props: {\n underline: 'always',\n color: 'textSecondary'\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette.text.secondaryChannel} / 0.4)` : alpha(theme.palette.text.secondary, 0.4)\n }\n }, {\n props: {\n underline: 'always',\n color: 'textDisabled'\n },\n style: {\n '--Link-underlineColor': (theme.vars || theme).palette.text.disabled\n }\n }, {\n props: {\n component: 'button'\n },\n style: {\n position: 'relative',\n WebkitTapHighlightColor: 'transparent',\n backgroundColor: 'transparent',\n // Reset default value\n // We disable the focus ring for mouse, touch and keyboard users.\n 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onBlur(event);\n }\n };\n const handleFocus = event => {\n if (isFocusVisible(event.target)) {\n setFocusVisible(true);\n }\n if (onFocus) {\n onFocus(event);\n }\n };\n const ownerState = {\n ...props,\n color,\n component,\n focusVisible,\n underline,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(LinkRoot, {\n color: color,\n className: clsx(classes.root, className),\n classes: TypographyClasses,\n component: component,\n onBlur: handleBlur,\n onFocus: handleFocus,\n ref: ref,\n ownerState: ownerState,\n variant: variant,\n ...other,\n sx: [...(v6Colors[color] === undefined ? [{\n color\n }] : []), ...(Array.isArray(sx) ? sx : [sx])],\n style: {\n ...other.style,\n ...(underline === 'always' && color !== 'inherit' && !v6Colors[color] && {\n '--Link-underlineColor': getTextDecoration({\n theme,\n ownerState\n })\n })\n }\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? 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React from 'react'\nimport { Checkbox, FormControlLabel } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\n\nconst useStyles = makeStyles()({\n block: {\n display: 'block',\n },\n})\n\nexport default function Checkbox2({\n checked,\n disabled,\n label,\n onChange,\n}: {\n checked: boolean\n disabled?: boolean\n label: string\n onChange: (event: React.ChangeEvent) => void\n}) {\n const { classes } = useStyles()\n return (\n }\n label={label}\n />\n )\n}\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { Button, DialogActions, DialogContent } from '@mui/material'\nimport { getSnapshot } from 'mobx-state-tree'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { when } from 'mobx'\nimport { getSession, Feature } from '@jbrowse/core/util'\nimport type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport type { Assembly } from '@jbrowse/core/assemblyManager/assembly'\n\n// locals\nimport Checkbox2 from './Checkbox2'\n\ninterface Display {\n id: string\n [key: string]: unknown\n}\ninterface Track {\n id: string\n displays: Display[]\n [key: string]: unknown\n}\n\nfunction stripIds(arr: Track[]) {\n return arr.map(({ id, displays, ...rest }) => ({\n ...rest,\n displays: displays.map(({ id, ...rest }) => rest),\n }))\n}\n\nconst BreakendMultiLevelOptionDialog = observer(function ({\n model,\n handleClose,\n feature,\n assemblyName,\n viewType,\n view,\n}: {\n model: unknown\n handleClose: () => void\n feature: Feature\n view: LinearGenomeViewModel\n assemblyName: string\n viewType: {\n getBreakendCoveringRegions: (arg: {\n feature: Feature\n assembly: Assembly\n }) => {\n pos: number\n refName: string\n mateRefName: string\n matePos: number\n }\n }\n}) {\n const [copyTracks, setCopyTracks] = useState(true)\n const [mirror, setMirror] = useState(true)\n\n return (\n \n \n {\n setCopyTracks(event.target.checked)\n }}\n />\n\n {copyTracks ? (\n {\n setMirror(event.target.checked)\n }}\n />\n ) : null}\n \n \n {\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n ;(async () => {\n const session = getSession(model)\n try {\n const asm =\n await session.assemblyManager.waitForAssembly(assemblyName)\n if (!asm) {\n throw new Error(`assembly ${assemblyName} not found`)\n }\n\n const { refName, pos, mateRefName, matePos } =\n viewType.getBreakendCoveringRegions({\n feature,\n assembly: asm,\n })\n\n const viewTracks = getSnapshot(view.tracks) as Track[]\n const breakpointSplitView = session.addView(\n 'BreakpointSplitView',\n {\n type: 'BreakpointSplitView',\n displayName: `${\n feature.get('name') || feature.get('id') || 'breakend'\n } split detail`,\n\n views: [\n {\n type: 'LinearGenomeView',\n hideHeader: true,\n tracks: stripIds(getSnapshot(view.tracks)),\n },\n {\n type: 'LinearGenomeView',\n hideHeader: true,\n tracks: stripIds(\n mirror ? [...viewTracks].reverse() : viewTracks,\n ),\n },\n ],\n },\n ) as unknown as { views: LinearGenomeViewModel[] }\n const r1 = asm.regions!.find(r => r.refName === refName)\n const r2 = asm.regions!.find(r => r.refName === mateRefName)\n if (!r1 || !r2) {\n throw new Error(\"can't find regions\")\n }\n await Promise.all([\n breakpointSplitView.views[0]!.navToLocations([\n {\n refName,\n start: r1.start,\n end: pos,\n assemblyName,\n },\n {\n refName,\n start: pos + 1,\n end: r1.end,\n assemblyName,\n },\n ]),\n breakpointSplitView.views[1]!.navToLocations([\n {\n refName: mateRefName,\n start: r2.start,\n end: matePos,\n assemblyName,\n },\n {\n refName: mateRefName,\n start: matePos + 1,\n end: r2.end,\n assemblyName,\n },\n ]),\n ])\n await when(\n () =>\n breakpointSplitView.views[1]!.initialized &&\n breakpointSplitView.views[0]!.initialized,\n )\n breakpointSplitView.views[1]!.zoomTo(10)\n breakpointSplitView.views[0]!.zoomTo(10)\n breakpointSplitView.views[1]!.centerAt(matePos, mateRefName)\n breakpointSplitView.views[0]!.centerAt(pos, refName)\n } catch (e) {\n console.error(e)\n session.notify(`${e}`)\n }\n })()\n handleClose()\n }}\n variant=\"contained\"\n color=\"primary\"\n autoFocus\n >\n OK\n \n {\n handleClose()\n }}\n >\n Cancel\n \n \n \n )\n})\n\nexport default BreakendMultiLevelOptionDialog\n","import React, { useState } from 'react'\nimport { observer } from 'mobx-react'\nimport { Button, DialogActions, DialogContent, TextField } from '@mui/material'\nimport { getSnapshot } from 'mobx-state-tree'\nimport { Dialog } from '@jbrowse/core/ui'\nimport {\n getSession,\n Feature,\n gatherOverlaps,\n useLocalStorage,\n} from '@jbrowse/core/util'\nimport type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view'\nimport type { Assembly } from '@jbrowse/core/assemblyManager/assembly'\n\n// locals\nimport Checkbox2 from './Checkbox2'\n\ninterface Display {\n id: string\n [key: string]: unknown\n}\ninterface Track {\n id: string\n displays: Display[]\n [key: string]: unknown\n}\n\nfunction stripIds(arr: Track[]) {\n return arr.map(({ id, displays, ...rest }) => ({\n ...rest,\n displays: displays.map(({ id, ...rest }) => rest),\n }))\n}\n\nconst BreakendSingleLevelOptionDialog = observer(function ({\n model,\n handleClose,\n feature,\n assemblyName,\n viewType,\n view,\n}: {\n model: unknown\n handleClose: () => void\n feature: Feature\n view: LinearGenomeViewModel\n assemblyName: string\n viewType: {\n getBreakendCoveringRegions: (arg: {\n feature: Feature\n assembly: Assembly\n }) => {\n pos: number\n refName: string\n mateRefName: string\n matePos: number\n }\n }\n}) {\n const [copyTracks, setCopyTracks] = useState(true)\n const [windowSize, setWindowSize] = useLocalStorage(\n 'breakpointWindowSize',\n '5000',\n )\n\n return (\n \n \n {\n setCopyTracks(event.target.checked)\n }}\n />\n\n {\n setWindowSize(event.target.value)\n }}\n />\n \n \n {\n const session = getSession(model)\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n ;(async () => {\n try {\n const assembly = session.assemblyManager.get(assemblyName)\n const w = +windowSize\n if (Number.isNaN(w)) {\n throw new Error('windowSize not a number')\n }\n const { refName, pos, mateRefName, matePos } =\n // @ts-expect-error\n viewType.getBreakendCoveringRegions({ feature, assembly })\n\n const breakpointSplitView = session.addView(\n 'BreakpointSplitView',\n {\n type: 'BreakpointSplitView',\n displayName: `${\n feature.get('name') || feature.get('id') || 'breakend'\n } split detail`,\n views: [\n {\n type: 'LinearGenomeView',\n tracks: stripIds(getSnapshot(view.tracks)),\n },\n ],\n },\n ) as unknown as { views: LinearGenomeViewModel[] }\n\n await breakpointSplitView.views[0]!.navToLocations(\n gatherOverlaps(\n [\n {\n refName,\n start: Math.max(0, pos - w),\n end: pos + w,\n assemblyName,\n },\n {\n refName: mateRefName,\n start: Math.max(0, matePos - w),\n end: matePos + w,\n assemblyName,\n },\n ],\n w,\n ),\n )\n } catch (e) {\n console.error(e)\n session.notify(`${e}`)\n }\n })()\n handleClose()\n }}\n variant=\"contained\"\n color=\"primary\"\n autoFocus\n >\n OK\n \n {\n handleClose()\n }}\n >\n Cancel\n \n \n \n )\n})\n\nexport default BreakendSingleLevelOptionDialog\n"],"names":["useStyles","makeStyles","block","display","Checkbox2","checked","disabled","label","onChange","classes","React","FormControlLabel","className","control","Checkbox","stripIds","arr","map","id","displays","rest","observer","model","handleClose","feature","assemblyName","viewType","view","copyTracks","setCopyTracks","useState","mirror","setMirror","Dialog","open","onClose","title","DialogContent","event","target","DialogActions","Button","onClick","session","getSession","asm","assemblyManager","waitForAssembly","Error","refName","pos","mateRefName","matePos","getBreakendCoveringRegions","assembly","viewTracks","getSnapshot","tracks","breakpointSplitView","addView","type","displayName","get","views","hideHeader","reverse","r1","regions","find","r","r2","Promise","all","navToLocations","start","end","when","initialized","zoomTo","centerAt","e","console","error","notify","variant","color","autoFocus","windowSize","setWindowSize","useLocalStorage","TextField","value","w","Number","isNaN","gatherOverlaps","Math","max"],"sourceRoot":""} \ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/4741.5a289f5d.chunk.js --- a/x/static/js/4741.5a289f5d.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[4741],{84741:(e,t,o)=>{o.r(t),o.d(t,{default:()=>g});var a=o(7552),n=o(49823),r=o(29499),s=o(99123),l=o(61723),i=o(48171),c=o(56089),d=o(33371),u=o(33248),h=o(74893),p=o(69500);const m=(0,h.A)((0,p.jsx)("path",{d:"M11 18h2v-2h-2zm1-16C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2m0 18c-4.41 0-8-3.59-8-8s3.59-8 8-8 8 3.59 8 8-3.59 8-8 8m0-14c-2.21 0-4 1.79-4 4h2c0-1.1.9-2 2-2s2 .9 2 2c0 2-3 1.75-3 5h2c0-2.25 3-2.5 3-5 0-2.21-1.79-4-4-4"}),"HelpOutline");function v({onClose:e,open:t}){return a.createElement(n.Dialog,{onClose:()=>{e()},open:t,title:"Info about session URLs"},a.createElement(r.A,null,a.createElement(s.A,null,"Because everything about the JBrowse session is encoded in the URL (e.g. state of the tracks, views, features selected, etc.) the sessions can get very long. 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client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M11 18h2v-2h-2zm1-16C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2m0 18c-4.41 0-8-3.59-8-8s3.59-8 8-8 8 3.59 8 8-3.59 8-8 8m0-14c-2.21 0-4 1.79-4 4h2c0-1.1.9-2 2-2s2 .9 2 2c0 2-3 1.75-3 5h2c0-2.25 3-2.5 3-5 0-2.21-1.79-4-4-4\"\n}), 'HelpOutline');","import React from 'react'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { DialogContent, DialogContentText } from '@mui/material'\n\nexport default function InfoDialog({\n onClose,\n open,\n}: {\n open: boolean\n onClose: () => void\n}) {\n return (\n {\n onClose()\n }}\n open={open}\n title=\"Info about session URLs\"\n >\n \n \n Because everything about the JBrowse session is encoded in the URL\n (e.g. state of the tracks, views, features selected, etc.) the\n sessions can get very long. Therefore, we created a URL shortener,\n both as a convenience and because long URLs can break some programs.\n Note that both the long and short URLs encode the same data, but due\n to long URLs causing problems with some programs, we recommend sharing\n short URLs.\n \n \n We generate the short URLs in a secure manner which involves\n encrypting the session on the client side with a random password\n string and uploading them to a central database. Then the random\n password is added to the URL but is not uploaded to the central\n database, making these short URLs effectively "end-to-end\n encrypted"\n \n \n Only users with a share link can read the session.\n \n \n \n )\n}\n","import React, { useState } from 'react'\nimport { Dialog } from '@jbrowse/core/ui'\nimport {\n DialogContent,\n DialogContentText,\n IconButton,\n FormControl,\n FormControlLabel,\n Radio,\n RadioGroup,\n} from '@mui/material'\n\n// icons\nimport HelpOutlineIcon from '@mui/icons-material/HelpOutline'\nimport InfoDialog from './ShareInfoDialog'\n\nconst SHARE_URL_LOCALSTORAGE_KEY = 'jbrowse-shareURL'\n\nexport default function SettingsDialog(props: {\n open: boolean\n onClose: (arg?: string) => void\n currentSetting: string\n}) {\n const { onClose, open, currentSetting } = props\n const [setting, setSetting] = useState(currentSetting)\n const [infoDialogOpen, setInfoDialogOpen] = useState(false)\n\n const handleClose = () => {\n localStorage.setItem(SHARE_URL_LOCALSTORAGE_KEY, setting)\n onClose(setting)\n }\n\n return (\n <>\n \n \n \n Select between generating long or short URLs for the session sharing\n {\n setInfoDialogOpen(true)\n }}\n >\n \n \n \n \n {\n setSetting(event.target.value)\n }}\n >\n }\n label=\"Short URL\"\n />\n }\n label=\"Long URL\"\n />\n \n \n \n \n {\n setInfoDialogOpen(false)\n }}\n />\n \n )\n}\n","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M12 2C6.48 2 2 6.48 2 12s4.48 10 10 10 10-4.48 10-10S17.52 2 12 2zm0 18c-4.42 0-8-3.58-8-8s3.58-8 8-8 8 3.58 8 8-3.58 8-8 8z\"\n}), 'RadioButtonUnchecked');","'use client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M8.465 8.465C9.37 7.56 10.62 7 12 7C14.76 7 17 9.24 17 12C17 13.38 16.44 14.63 15.535 15.535C14.63 16.44 13.38 17 12 17C9.24 17 7 14.76 7 12C7 10.62 7.56 9.37 8.465 8.465Z\"\n}), 'RadioButtonChecked');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport RadioButtonUncheckedIcon from \"../internal/svg-icons/RadioButtonUnchecked.js\";\nimport RadioButtonCheckedIcon from \"../internal/svg-icons/RadioButtonChecked.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst RadioButtonIconRoot = styled('span', {\n shouldForwardProp: rootShouldForwardProp\n})({\n position: 'relative',\n display: 'flex'\n});\nconst RadioButtonIconBackground = styled(RadioButtonUncheckedIcon)({\n // Scale applied to prevent dot misalignment in Safari\n transform: 'scale(1)'\n});\nconst RadioButtonIconDot = styled(RadioButtonCheckedIcon)(memoTheme(({\n theme\n}) => ({\n left: 0,\n position: 'absolute',\n transform: 'scale(0)',\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeIn,\n duration: theme.transitions.duration.shortest\n }),\n variants: [{\n props: {\n checked: true\n },\n style: {\n transform: 'scale(1)',\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeOut,\n duration: theme.transitions.duration.shortest\n })\n }\n }]\n})));\n\n/**\n * @ignore - internal component.\n */\nfunction RadioButtonIcon(props) {\n const {\n checked = false,\n classes = {},\n fontSize\n } = props;\n const ownerState = {\n ...props,\n checked\n };\n return /*#__PURE__*/_jsxs(RadioButtonIconRoot, {\n className: classes.root,\n ownerState: ownerState,\n children: [/*#__PURE__*/_jsx(RadioButtonIconBackground, {\n fontSize: fontSize,\n className: classes.background,\n ownerState: ownerState\n }), /*#__PURE__*/_jsx(RadioButtonIconDot, {\n fontSize: fontSize,\n className: classes.dot,\n ownerState: ownerState\n })]\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? RadioButtonIcon.propTypes /* remove-proptypes */ = {\n /**\n * If `true`, the component is checked.\n */\n checked: PropTypes.bool,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * The size of the component.\n * `small` is equivalent to the dense radio styling.\n */\n fontSize: PropTypes.oneOf(['small', 'medium'])\n} : void 0;\nexport default RadioButtonIcon;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport refType from '@mui/utils/refType';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { alpha } from '@mui/system/colorManipulator';\nimport SwitchBase from \"../internal/SwitchBase.js\";\nimport RadioButtonIcon from \"./RadioButtonIcon.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createChainedFunction from \"../utils/createChainedFunction.js\";\nimport useFormControl from \"../FormControl/useFormControl.js\";\nimport useRadioGroup from \"../RadioGroup/useRadioGroup.js\";\nimport radioClasses, { getRadioUtilityClass } from \"./radioClasses.js\";\nimport rootShouldForwardProp from \"../styles/rootShouldForwardProp.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n color,\n size\n } = ownerState;\n const slots = {\n root: ['root', `color${capitalize(color)}`, size !== 'medium' && `size${capitalize(size)}`]\n };\n return {\n ...classes,\n ...composeClasses(slots, getRadioUtilityClass, classes)\n };\n};\nconst RadioRoot = styled(SwitchBase, {\n shouldForwardProp: prop => rootShouldForwardProp(prop) || prop === 'classes',\n name: 'MuiRadio',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, ownerState.size !== 'medium' && styles[`size${capitalize(ownerState.size)}`], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n color: (theme.vars || theme).palette.text.secondary,\n [`&.${radioClasses.disabled}`]: {\n color: (theme.vars || theme).palette.action.disabled\n },\n variants: [{\n props: {\n color: 'default',\n disabled: false,\n disableRipple: false\n },\n style: {\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette.action.activeChannel} / ${theme.vars.palette.action.hoverOpacity})` : alpha(theme.palette.action.active, theme.palette.action.hoverOpacity)\n }\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color,\n disabled: false,\n disableRipple: false\n },\n style: {\n '&:hover': {\n backgroundColor: theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / ${theme.vars.palette.action.hoverOpacity})` : alpha(theme.palette[color].main, theme.palette.action.hoverOpacity)\n }\n }\n })), ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color,\n disabled: false\n },\n style: {\n [`&.${radioClasses.checked}`]: {\n color: (theme.vars || theme).palette[color].main\n }\n }\n })), {\n // Should be last to override other colors\n props: {\n disableRipple: false\n },\n style: {\n // Reset on touch devices, it doesn't add specificity\n '&:hover': {\n '@media (hover: none)': {\n backgroundColor: 'transparent'\n }\n }\n }\n }]\n})));\nfunction areEqualValues(a, b) {\n if (typeof b === 'object' && b !== null) {\n return a === b;\n }\n\n // The value could be a number, the DOM will stringify it anyway.\n return String(a) === String(b);\n}\nconst defaultCheckedIcon = /*#__PURE__*/_jsx(RadioButtonIcon, {\n checked: true\n});\nconst defaultIcon = /*#__PURE__*/_jsx(RadioButtonIcon, {});\nconst Radio = /*#__PURE__*/React.forwardRef(function Radio(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiRadio'\n });\n const {\n checked: checkedProp,\n checkedIcon = defaultCheckedIcon,\n color = 'primary',\n icon = defaultIcon,\n name: nameProp,\n onChange: onChangeProp,\n size = 'medium',\n className,\n disabled: disabledProp,\n disableRipple = false,\n ...other\n } = props;\n const muiFormControl = useFormControl();\n let disabled = disabledProp;\n if (muiFormControl) {\n if (typeof disabled === 'undefined') {\n disabled = muiFormControl.disabled;\n }\n }\n disabled ??= false;\n const ownerState = {\n ...props,\n disabled,\n disableRipple,\n color,\n size\n };\n const classes = useUtilityClasses(ownerState);\n const radioGroup = useRadioGroup();\n let checked = checkedProp;\n const onChange = createChainedFunction(onChangeProp, radioGroup && radioGroup.onChange);\n let name = nameProp;\n if (radioGroup) {\n if (typeof checked === 'undefined') {\n checked = areEqualValues(radioGroup.value, props.value);\n }\n if (typeof name === 'undefined') {\n name = radioGroup.name;\n }\n }\n return /*#__PURE__*/_jsx(RadioRoot, {\n type: \"radio\",\n icon: /*#__PURE__*/React.cloneElement(icon, {\n fontSize: defaultIcon.props.fontSize ?? size\n }),\n checkedIcon: /*#__PURE__*/React.cloneElement(checkedIcon, {\n fontSize: defaultCheckedIcon.props.fontSize ?? size\n }),\n disabled: disabled,\n ownerState: ownerState,\n classes: classes,\n name: name,\n checked: checked,\n onChange: onChange,\n ref: ref,\n className: clsx(classes.root, className),\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Radio.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * If `true`, the component is checked.\n */\n checked: PropTypes.bool,\n /**\n * The icon to display when the component is checked.\n * @default \n */\n checkedIcon: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the component is disabled.\n */\n disabled: PropTypes.bool,\n /**\n * If `true`, the ripple effect is disabled.\n * @default false\n */\n disableRipple: PropTypes.bool,\n /**\n * The icon to display when the component is unchecked.\n * @default \n */\n icon: PropTypes.node,\n /**\n * The id of the `input` element.\n */\n id: PropTypes.string,\n /**\n * [Attributes](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/input#Attributes) applied to the `input` element.\n */\n inputProps: PropTypes.object,\n /**\n * Pass a ref to the `input` element.\n */\n inputRef: refType,\n /**\n * Name attribute of the `input` element.\n */\n name: PropTypes.string,\n /**\n * Callback fired when the state is changed.\n *\n * @param {React.ChangeEvent} event The event source of the callback.\n * You can pull out the new value by accessing `event.target.value` (string).\n * You can pull out the new checked state by accessing `event.target.checked` (boolean).\n */\n onChange: PropTypes.func,\n /**\n * If `true`, the `input` element is required.\n * @default false\n */\n required: PropTypes.bool,\n /**\n * The size of the component.\n * `small` is equivalent to the dense radio styling.\n * @default 'medium'\n */\n size: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['medium', 'small']), PropTypes.string]),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The value of the component. The DOM API casts this to a string.\n */\n value: PropTypes.any\n} : void 0;\nexport default Radio;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getRadioUtilityClass(slot) {\n return generateUtilityClass('MuiRadio', slot);\n}\nconst radioClasses = generateUtilityClasses('MuiRadio', ['root', 'checked', 'disabled', 'colorPrimary', 'colorSecondary', 'sizeSmall']);\nexport default radioClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport FormGroup from \"../FormGroup/index.js\";\nimport { getRadioGroupUtilityClass } from \"./radioGroupClasses.js\";\nimport useForkRef from \"../utils/useForkRef.js\";\nimport useControlled from \"../utils/useControlled.js\";\nimport RadioGroupContext from \"./RadioGroupContext.js\";\nimport useId from \"../utils/useId.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = props => {\n const {\n classes,\n row,\n error\n } = props;\n const slots = {\n root: ['root', row && 'row', error && 'error']\n };\n return composeClasses(slots, getRadioGroupUtilityClass, classes);\n};\nconst RadioGroup = /*#__PURE__*/React.forwardRef(function RadioGroup(props, ref) {\n const {\n // private\n // eslint-disable-next-line react/prop-types\n actions,\n children,\n className,\n defaultValue,\n name: nameProp,\n onChange,\n value: valueProp,\n ...other\n } = props;\n const rootRef = React.useRef(null);\n const classes = useUtilityClasses(props);\n const [value, setValueState] = useControlled({\n controlled: valueProp,\n default: defaultValue,\n name: 'RadioGroup'\n });\n React.useImperativeHandle(actions, () => ({\n focus: () => {\n let input = rootRef.current.querySelector('input:not(:disabled):checked');\n if (!input) {\n input = rootRef.current.querySelector('input:not(:disabled)');\n }\n if (input) {\n input.focus();\n }\n }\n }), []);\n const handleRef = useForkRef(ref, rootRef);\n const name = useId(nameProp);\n const contextValue = React.useMemo(() => ({\n name,\n onChange(event) {\n setValueState(event.target.value);\n if (onChange) {\n onChange(event, event.target.value);\n }\n },\n value\n }), [name, onChange, setValueState, value]);\n return /*#__PURE__*/_jsx(RadioGroupContext.Provider, {\n value: contextValue,\n children: /*#__PURE__*/_jsx(FormGroup, {\n role: \"radiogroup\",\n ref: handleRef,\n className: clsx(classes.root, className),\n ...other,\n children: children\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? RadioGroup.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The default value. Use when the component is not controlled.\n */\n defaultValue: PropTypes.any,\n /**\n * The name used to reference the value of the control.\n * If you don't provide this prop, it falls back to a randomly generated name.\n */\n name: PropTypes.string,\n /**\n * Callback fired when a radio button is selected.\n *\n * @param {React.ChangeEvent} event The event source of the callback.\n * @param {string} value The value of the selected radio button.\n * You can pull out the new value by accessing `event.target.value` (string).\n */\n onChange: PropTypes.func,\n /**\n * Value of the selected radio button. The DOM API casts this to a string.\n */\n value: PropTypes.any\n} : void 0;\nexport default RadioGroup;","import * as React from 'react';\n/**\n * @ignore - internal component.\n */\nconst RadioGroupContext = /*#__PURE__*/React.createContext(undefined);\nif (process.env.NODE_ENV !== 'production') {\n RadioGroupContext.displayName = 'RadioGroupContext';\n}\nexport default RadioGroupContext;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getRadioGroupUtilityClass(slot) {\n return generateUtilityClass('MuiRadioGroup', slot);\n}\nconst radioGroupClasses = generateUtilityClasses('MuiRadioGroup', ['root', 'row', 'error']);\nexport default radioGroupClasses;","'use client';\n\nimport * as React from 'react';\nimport RadioGroupContext from \"./RadioGroupContext.js\";\nexport default function useRadioGroup() {\n return React.useContext(RadioGroupContext);\n}"],"names":["createSvgIcon","d","InfoDialog","onClose","open","React","Dialog","title","DialogContent","DialogContentText","SHARE_URL_LOCALSTORAGE_KEY","SettingsDialog","props","currentSetting","setting","setSetting","useState","infoDialogOpen","setInfoDialogOpen","handleClose","localStorage","setItem","IconButton","onClick","HelpOutlineIcon","FormControl","component","RadioGroup","value","onChange","event","target","FormControlLabel","control","Radio","label","RadioButtonIconRoot","styled","shouldForwardProp","rootShouldForwardProp","position","display","RadioButtonIconBackground","RadioButtonUnchecked","transform","RadioButtonIconDot","RadioButtonChecked","memoTheme","theme","left","transition","transitions","create","easing","easeIn","duration","shortest","variants","checked","style","easeOut","classes","fontSize","ownerState","className","root","children","background","dot","RadioRoot","SwitchBase","prop","name","slot","overridesResolver","styles","size","capitalize","color","vars","palette","text","secondary","radioClasses","disabled","action","disableRipple","backgroundColor","activeChannel","hoverOpacity","active","Object","entries","filter","createSimplePaletteValueFilter","map","mainChannel","main","defaultCheckedIcon","defaultIcon","inProps","ref","checkedProp","checkedIcon","icon","nameProp","onChangeProp","disabledProp","other","muiFormControl","useFormControl","slots","composeClasses","useUtilityClasses","radioGroup","useRadioGroup","createChainedFunction","a","b","String","type","clsx","getRadioUtilityClass","actions","defaultValue","valueProp","rootRef","row","error","setValueState","controlled","default","focus","input","current","querySelector","handleRef","contextValue","Provider","role","undefined","getRadioGroupUtilityClass"],"sourceRoot":""} 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React from 'react'\nimport { getContainingView, getSession, Feature } from '@jbrowse/core/util'\nimport { Menu } from '@jbrowse/core/ui'\n\n// locals\nimport { LinearSyntenyDisplayModel } from '../model'\nimport { LinearSyntenyViewModel } from '../../LinearSyntenyView/model'\n\ninterface ClickCoord {\n clientX: number\n clientY: number\n feature: { f: Feature }\n}\n\nexport default function SyntenyContextMenu({\n model,\n onClose,\n anchorEl,\n}: {\n onClose: () => void\n model: LinearSyntenyDisplayModel\n anchorEl: ClickCoord\n}) {\n const view = getContainingView(model) as LinearSyntenyViewModel\n const { clientX, clientY, feature } = anchorEl\n return (\n {\n callback(event)\n onClose()\n }}\n anchorEl={{\n nodeType: 1,\n getBoundingClientRect: () => {\n const x = clientX\n const y = clientY\n return {\n top: y,\n left: x,\n bottom: y,\n right: x,\n width: 0,\n height: 0,\n x,\n y,\n toJSON() {},\n }\n },\n }}\n onClose={onClose}\n open={Boolean(anchorEl)}\n menuItems={[\n {\n label: 'Center on feature',\n onClick: () => {\n const { f } = feature\n const start = f.get('start')\n const end = f.get('end')\n const refName = f.get('refName')\n const mate = f.get('mate')\n view.views[0]!.navToLocString(`${refName}:${start}-${end}`).catch(\n (e: unknown) => {\n console.error(e)\n getSession(model).notifyError(`${e}`, e)\n },\n )\n view.views[1]!.navToLocString(\n `${mate.refName}:${mate.start}-${mate.end}`,\n ).catch((e: unknown) => {\n console.error(e)\n getSession(model).notifyError(`${e}`, e)\n })\n },\n },\n ]}\n />\n )\n}\n","import React, { useState, useCallback, useRef, lazy } from 'react'\nimport { observer } from 'mobx-react'\nimport { getContainingView } from '@jbrowse/core/util'\nimport { transaction } from 'mobx'\nimport { makeStyles } from 'tss-react/mui'\n\n// locals\nimport { LinearSyntenyDisplayModel } from '../model'\nimport { getId, MAX_COLOR_RANGE } from '../drawSynteny'\nimport { LinearSyntenyViewModel } from '../../LinearSyntenyView/model'\nimport SyntenyContextMenu from './SyntenyContextMenu'\nimport { ClickCoord, getTooltip, onSynClick, onSynContextClick } from './util'\n\nconst SyntenyTooltip = lazy(() => import('./SyntenyTooltip'))\n\ntype Timer = ReturnType\n\nconst useStyles = makeStyles()({\n pix: {\n imageRendering: 'pixelated',\n pointerEvents: 'none',\n visibility: 'hidden',\n position: 'absolute',\n },\n rel: {\n position: 'relative',\n },\n abs: {\n position: 'absolute',\n },\n none: {\n pointEvents: 'none',\n },\n})\n\nconst LinearSyntenyRendering = observer(function ({\n model,\n}: {\n model: LinearSyntenyDisplayModel\n}) {\n const { classes, cx } = useStyles()\n const xOffset = useRef(0)\n const currScrollFrame = useRef()\n const view = getContainingView(model) as LinearSyntenyViewModel\n const height = view.middleComparativeHeight\n const width = view.width\n const delta = useRef(0)\n const timeout = useRef()\n const [anchorEl, setAnchorEl] = useState()\n const [tooltip, setTooltip] = useState('')\n const [currX, setCurrX] = useState()\n const [mouseCurrDownX, setMouseCurrDownX] = useState()\n const [mouseInitialDownX, setMouseInitialDownX] = useState()\n const [currY, setCurrY] = useState()\n const { mouseoverId } = model\n\n // these useCallbacks avoid new refs from being created on any mouseover,\n // etc.\n // biome-ignore lint/correctness/useExhaustiveDependencies:\n const k1 = useCallback(\n (ref: HTMLCanvasElement | null) => {\n model.setMouseoverCanvasRef(ref)\n },\n // eslint-disable-next-line react-hooks/exhaustive-deps\n [model, height, width],\n )\n // biome-ignore lint/correctness/useExhaustiveDependencies:\n const k2 = useCallback(\n (ref: HTMLCanvasElement | null) => {\n model.setMainCanvasRef(ref)\n function onWheel(event: WheelEvent) {\n event.preventDefault()\n if (event.ctrlKey) {\n delta.current += event.deltaY / 500\n for (const v of view.views) {\n v.setScaleFactor(\n delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current),\n )\n }\n if (timeout.current) {\n clearTimeout(timeout.current)\n }\n timeout.current = setTimeout(() => {\n for (const v of view.views) {\n v.setScaleFactor(1)\n v.zoomTo(\n delta.current > 0\n ? v.bpPerPx * (1 + delta.current)\n : v.bpPerPx / (1 - delta.current),\n event.clientX - (ref?.getBoundingClientRect().left || 0),\n )\n }\n delta.current = 0\n }, 300)\n } else {\n if (Math.abs(event.deltaY) < Math.abs(event.deltaX)) {\n xOffset.current += event.deltaX / 2\n }\n if (currScrollFrame.current === undefined) {\n currScrollFrame.current = requestAnimationFrame(() => {\n transaction(() => {\n for (const v of view.views) {\n v.horizontalScroll(xOffset.current)\n }\n xOffset.current = 0\n currScrollFrame.current = undefined\n })\n })\n }\n }\n }\n ref?.addEventListener('wheel', onWheel)\n\n // this is a react 19-ism to have a cleanup in the ref callback\n // https://react.dev/blog/2024/04/25/react-19#cleanup-functions-for-refs\n // note: it warns in earlier versions of react\n return () => {\n ref?.removeEventListener('wheel', onWheel)\n }\n },\n // eslint-disable-next-line react-hooks/exhaustive-deps\n [model, height, width],\n )\n // biome-ignore lint/correctness/useExhaustiveDependencies:\n const k3 = useCallback(\n (ref: HTMLCanvasElement | null) => {\n model.setClickMapCanvasRef(ref)\n },\n // eslint-disable-next-line react-hooks/exhaustive-deps\n [model, height, width],\n )\n // biome-ignore lint/correctness/useExhaustiveDependencies:\n const k4 = useCallback(\n (ref: HTMLCanvasElement | null) => {\n model.setCigarClickMapCanvasRef(ref)\n },\n // eslint-disable-next-line react-hooks/exhaustive-deps\n [model, height, width],\n )\n\n return (\n

\n \n {\n if (mouseCurrDownX !== undefined) {\n xOffset.current += mouseCurrDownX - event.clientX\n setMouseCurrDownX(event.clientX)\n if (currScrollFrame.current === undefined) {\n currScrollFrame.current = requestAnimationFrame(() => {\n transaction(() => {\n for (const v of view.views) {\n v.horizontalScroll(xOffset.current)\n }\n xOffset.current = 0\n currScrollFrame.current = undefined\n })\n })\n }\n } else {\n const ref1 = model.clickMapCanvas\n const ref2 = model.cigarClickMapCanvas\n if (!ref1 || !ref2) {\n return\n }\n const rect = ref1.getBoundingClientRect()\n const ctx1 = ref1.getContext('2d')\n const ctx2 = ref2.getContext('2d')\n if (!ctx1 || !ctx2) {\n return\n }\n const { clientX, clientY } = event\n const x = clientX - rect.left\n const y = clientY - rect.top\n setCurrX(clientX)\n setCurrY(clientY)\n const [r1, g1, b1] = ctx1.getImageData(x, y, 1, 1).data\n const [r2, g2, b2] = ctx2.getImageData(x, y, 1, 1).data\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / model.numFeats)\n const id = getId(r1!, g1!, b1!, unitMultiplier)\n model.setMouseoverId(model.featPositions[id]?.f.id())\n if (id === -1) {\n setTooltip('')\n } else if (model.featPositions[id]) {\n const { f, cigar } = model.featPositions[id]\n const unitMultiplier2 = Math.floor(MAX_COLOR_RANGE / cigar.length)\n const cigarIdx = getId(r2!, g2!, b2!, unitMultiplier2)\n setTooltip(getTooltip(f, cigar[cigarIdx], cigar[cigarIdx + 1]))\n }\n }\n }}\n onMouseLeave={() => {\n model.setMouseoverId(undefined)\n setMouseInitialDownX(undefined)\n setMouseCurrDownX(undefined)\n }}\n onMouseDown={evt => {\n setMouseCurrDownX(evt.clientX)\n setMouseInitialDownX(evt.clientX)\n }}\n onMouseUp={evt => {\n setMouseCurrDownX(undefined)\n if (\n mouseInitialDownX !== undefined &&\n Math.abs(evt.clientX - mouseInitialDownX) < 5\n ) {\n onSynClick(evt, model)\n }\n }}\n onContextMenu={evt => {\n onSynContextClick(evt, model, setAnchorEl)\n }}\n data-testid=\"synteny_canvas\"\n className={classes.abs}\n width={width}\n height={height}\n />\n

\n )\n})\n\nexport default LinearSyntenyRendering\n","import React, { useEffect, useState } from 'react'\nimport { makeStyles } from 'tss-react/mui'\nimport { observer } from 'mobx-react'\nimport { LoadingEllipses } from '@jbrowse/core/ui'\n\n// locals\nimport LinearSyntenyRendering from './LinearSyntenyRendering'\nimport { LinearSyntenyDisplayModel } from '../model'\n\nconst useStyles = makeStyles()(theme => {\n const bg = theme.palette.action.disabledBackground\n return {\n loading: {\n paddingLeft: '0.6em',\n backgroundColor: theme.palette.background.default,\n backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,\n textAlign: 'center',\n },\n blockMessage: {\n background: '#f1f1f1',\n padding: 10,\n },\n blockError: {\n background: '#f1f1f1',\n padding: 10,\n color: 'red',\n },\n }\n})\n\nfunction LoadingMessage() {\n // only show the loading message after 300ms to prevent excessive flickering\n const [shown, setShown] = useState(false)\n const { classes } = useStyles()\n useEffect(() => {\n const timeout = setTimeout(() => {\n setShown(true)\n }, 300)\n return () => {\n clearTimeout(timeout)\n }\n })\n\n return shown ? (\n

\n \n

\n ) : null\n}\n\nfunction BlockMessage({ messageText }: { messageText: string }) {\n const { classes } = useStyles()\n return

{messageText}

\n}\n\nfunction BlockError({ error }: { error: unknown }) {\n const { classes } = useStyles()\n return

{`${error}`}

\n}\n\nconst ServerSideRenderedBlockContent = observer(function ({\n model,\n}: {\n model: LinearSyntenyDisplayModel\n}) {\n if (model.error) {\n return \n }\n if (model.message) {\n return \n }\n if (!model.features) {\n return \n }\n\n return \n})\n\nexport default ServerSideRenderedBlockContent\n","import React from 'react'\nimport {\n assembleLocString,\n doesIntersect2,\n getSession,\n isSessionModelWithWidgets,\n Feature,\n getContainingTrack,\n getContainingView,\n} from '@jbrowse/core/util'\n\n// locals\nimport { getId, MAX_COLOR_RANGE } from '../drawSynteny'\nimport { LinearSyntenyDisplayModel } from '../model'\n\ninterface Pos {\n offsetPx: number\n}\n\nexport interface ClickCoord {\n clientX: number\n clientY: number\n feature: { f: Feature }\n}\n\ninterface FeatPos {\n p11: Pos\n p12: Pos\n p21: Pos\n p22: Pos\n f: Feature\n cigar: string[]\n}\n\nexport function drawMatchSimple({\n feature,\n ctx,\n offsets,\n cb,\n height,\n drawCurves,\n oobLimit,\n viewWidth,\n hideTiny,\n}: {\n feature: FeatPos\n ctx: CanvasRenderingContext2D\n offsets: number[]\n oobLimit: number\n viewWidth: number\n cb: (ctx: CanvasRenderingContext2D) => void\n height: number\n drawCurves?: boolean\n hideTiny?: boolean\n}) {\n const { p11, p12, p21, p22 } = feature\n\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n const minX = Math.min(x21, x22)\n const maxX = Math.max(x21, x22)\n\n if (!doesIntersect2(minX, maxX, -oobLimit, viewWidth + oobLimit)) {\n return\n }\n\n // drawing a line if the results are thin: drawing a line results in much\n // less pixellation than filling in a thin polygon\n if (l1 <= 1 && l2 <= 1) {\n // hideTiny can be used to avoid drawing mouseover for thin lines in this\n // case\n if (!hideTiny) {\n ctx.beginPath()\n ctx.moveTo(x11, y1)\n if (drawCurves) {\n ctx.bezierCurveTo(x11, mid, x21, mid, x21, y2)\n } else {\n ctx.lineTo(x21, y2)\n }\n ctx.stroke()\n }\n } else {\n draw(ctx, x11, x12, y1, x22, x21, y2, mid, drawCurves)\n cb(ctx)\n }\n}\n\nexport function draw(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n mid: number,\n drawCurves?: boolean,\n) {\n if (drawCurves) {\n drawBezierBox(ctx, x1, x2, y1, x3, x4, y2, mid)\n } else {\n drawBox(ctx, x1, x2, y1, x3, x4, y2)\n }\n}\n\nexport function drawBox(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n) {\n ctx.beginPath()\n ctx.moveTo(x1, y1)\n ctx.lineTo(x2, y1)\n ctx.lineTo(x3, y2)\n ctx.lineTo(x4, y2)\n ctx.closePath()\n ctx.fill()\n}\n\nexport function drawBezierBox(\n ctx: CanvasRenderingContext2D,\n x1: number,\n x2: number,\n y1: number,\n x3: number,\n x4: number,\n y2: number,\n mid: number,\n) {\n const len1 = Math.abs(x1 - x2)\n const len2 = Math.abs(x1 - x2)\n\n // heuristic to not draw hourglass inversions with bezier curves when they\n // are thin and far apart because it results in areas that are not drawn well\n // demo https://codesandbox.io/s/fast-glitter-q3b1or?file=/src/index.js\n if (len1 < 5 && len2 < 5 && x2 < x1 && Math.abs(x1 - x3) > 100) {\n const tmp = x1\n x1 = x2\n x2 = tmp\n }\n ctx.beginPath()\n ctx.moveTo(x1, y1)\n ctx.lineTo(x2, y1)\n ctx.bezierCurveTo(x2, mid, x3, mid, x3, y2)\n ctx.lineTo(x4, y2)\n ctx.bezierCurveTo(x4, mid, x1, mid, x1, y1)\n ctx.closePath()\n ctx.fill()\n}\n\nexport function onSynClick(\n event: React.MouseEvent,\n model: LinearSyntenyDisplayModel,\n) {\n const view = getContainingView(model)\n const track = getContainingTrack(model)\n const ref1 = model.clickMapCanvas\n const ref2 = model.cigarClickMapCanvas\n if (!ref1 || !ref2) {\n return\n }\n const rect = ref1.getBoundingClientRect()\n const ctx1 = ref1.getContext('2d')\n const ctx2 = ref2.getContext('2d')\n if (!ctx1 || !ctx2) {\n return\n }\n const x = event.clientX - rect.left\n const y = event.clientY - rect.top\n const [r1, g1, b1] = ctx1.getImageData(x, y, 1, 1).data\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / model.numFeats)\n const id = getId(r1!, g1!, b1!, unitMultiplier)\n const feat = model.featPositions[id]\n if (feat) {\n const { f } = feat\n model.setClickId(f.id())\n const session = getSession(model)\n if (isSessionModelWithWidgets(session)) {\n session.showWidget(\n session.addWidget('BaseFeatureWidget', 'baseFeature', {\n view,\n track,\n featureData: f.toJSON(),\n }),\n )\n }\n }\n return feat\n}\n\nexport function onSynContextClick(\n event: React.MouseEvent,\n model: LinearSyntenyDisplayModel,\n setAnchorEl: (arg: ClickCoord) => void,\n) {\n event.preventDefault()\n const ref1 = model.clickMapCanvas\n const ref2 = model.cigarClickMapCanvas\n if (!ref1 || !ref2) {\n return\n }\n const rect = ref1.getBoundingClientRect()\n const ctx1 = ref1.getContext('2d')\n const ctx2 = ref2.getContext('2d')\n if (!ctx1 || !ctx2) {\n return\n }\n const { clientX, clientY } = event\n const x = clientX - rect.left\n const y = clientY - rect.top\n const [r1, g1, b1] = ctx1.getImageData(x, y, 1, 1).data\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / model.numFeats)\n const id = getId(r1!, g1!, b1!, unitMultiplier)\n const f = model.featPositions[id]\n if (f) {\n model.setClickId(f.f.id())\n setAnchorEl({ clientX, clientY, feature: f })\n }\n}\n\nexport function getTooltip(f: Feature, cigarOp?: string, cigarOpLen?: string) {\n // @ts-expect-error\n const f1 = f.toJSON() as {\n refName: string\n start: number\n end: number\n strand?: number\n assemblyName: string\n identity?: number\n name?: string\n mate: {\n start: number\n end: number\n refName: string\n name: string\n }\n }\n const f2 = f1.mate\n const l1 = f1.end - f1.start\n const l2 = f2.end - f2.start\n const identity = f1.identity\n const n1 = f1.name\n const n2 = f2.name\n return [\n `Loc1: ${assembleLocString(f1)}`,\n `Loc2: ${assembleLocString(f2)}`,\n `Inverted: ${f1.strand === -1}`,\n `Query len: ${l1.toLocaleString('en-US')}`,\n `Target len: ${l2.toLocaleString('en-US')}`,\n identity ? `Identity: ${identity.toPrecision(2)}` : '',\n cigarOp ? `CIGAR operator: ${cigarOp}${cigarOpLen}` : '',\n n1 ? `Name 1: ${n1}` : '',\n n2 ? `Name 1: ${n2}` : '',\n ]\n .filter(f => !!f)\n .join('')\n}\n","import { doesIntersect2, getContainingView } from '@jbrowse/core/util'\n// locals\nimport { LinearSyntenyViewModel } from '../LinearSyntenyView/model'\nimport { LinearSyntenyDisplayModel } from './model'\nimport { draw, drawMatchSimple } from './components/util'\n\nexport const MAX_COLOR_RANGE = 255 * 255 * 255 // max color range\n\nfunction makeColor(idx: number) {\n const r = Math.floor(idx / (255 * 255)) % 255\n const g = Math.floor(idx / 255) % 255\n const b = idx % 255\n return `rgb(${r},${g},${b})`\n}\n\nconst colorMap = {\n I: '#ff03',\n N: '#0a03',\n D: '#00f3',\n X: 'brown',\n M: '#f003',\n '=': '#f003',\n}\n\nconst lineLimit = 3\n\nconst oobLimit = 1600\n\nexport function getId(r: number, g: number, b: number, unitMultiplier: number) {\n return Math.floor((r * 255 * 255 + g * 255 + b - 1) / unitMultiplier)\n}\n\nexport function drawRef(\n model: LinearSyntenyDisplayModel,\n ctx1: CanvasRenderingContext2D,\n ctx3?: CanvasRenderingContext2D,\n) {\n const view = getContainingView(model) as LinearSyntenyViewModel\n const drawCurves = view.drawCurves\n const drawCIGAR = view.drawCIGAR\n const height = view.middleComparativeHeight\n const width = view.width\n const bpPerPxs = view.views.map(v => v.bpPerPx)\n\n if (ctx3) {\n ctx3.imageSmoothingEnabled = false\n }\n\n ctx1.beginPath()\n const featPos = model.featPositions\n const offsets = view.views.map(v => v.offsetPx)\n\n const unitMultiplier = Math.floor(MAX_COLOR_RANGE / featPos.length)\n\n // this loop is optimized to draw many thin lines with a single ctx.stroke\n // call, a separate loop below draws larger boxes\n ctx1.fillStyle = colorMap.M\n ctx1.strokeStyle = colorMap.M\n for (const { p11, p12, p21, p22 } of featPos) {\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n\n // drawing a line if the results are thin results in much less pixellation\n // than filling in a thin polygon\n if (\n l1 <= lineLimit &&\n l2 <= lineLimit &&\n x21 < width + oobLimit &&\n x21 > -oobLimit\n ) {\n ctx1.moveTo(x11, y1)\n if (drawCurves) {\n ctx1.bezierCurveTo(x11, mid, x21, mid, x21, y2)\n } else {\n ctx1.lineTo(x21, y2)\n }\n }\n }\n ctx1.stroke()\n\n // this loop only draws small lines as a polyline, the polyline calls\n // ctx.stroke once is much more efficient than calling stroke() many times\n ctx1.fillStyle = colorMap.M\n ctx1.strokeStyle = colorMap.M\n for (const { p11, p12, p21, p22, f, cigar } of featPos) {\n const x11 = p11.offsetPx - offsets[0]!\n const x12 = p12.offsetPx - offsets[0]!\n const x21 = p21.offsetPx - offsets[1]!\n const x22 = p22.offsetPx - offsets[1]!\n const l1 = Math.abs(x12 - x11)\n const l2 = Math.abs(x22 - x21)\n const minX = Math.min(x21, x22)\n const maxX = Math.max(x21, x22)\n const y1 = 0\n const y2 = height\n const mid = (y2 - y1) / 2\n\n if (\n !(l1 <= lineLimit && l2 <= lineLimit) &&\n doesIntersect2(minX, maxX, -oobLimit, view.width + oobLimit)\n ) {\n const s1 = f.get('strand')\n const k1 = s1 === -1 ? x12 : x11\n const k2 = s1 === -1 ? x11 : x12\n\n // rev1/rev2 flip the direction of the CIGAR drawing in horizontally flipped\n // modes. somewhat heuristically determined, but tested for\n const rev1 = k1 < k2 ? 1 : -1\n const rev2 = (x21 < x22 ? 1 : -1) * s1\n\n // cx1/cx2 are the current x positions on top and bottom rows\n let cx1 = k1\n let cx2 = s1 === -1 ? x22 : x21\n if (cigar.length && drawCIGAR) {\n // continuingFlag skips drawing commands on very small CIGAR features\n let continuingFlag = false\n\n // px1/px2 are the previous x positions on the top and bottom rows\n let px1 = 0\n let px2 = 0\n const unitMultiplier2 = Math.floor(MAX_COLOR_RANGE / cigar.length)\n for (let j = 0; j < cigar.length; j += 2) {\n const idx = j * unitMultiplier2 + 1\n\n const len = +cigar[j]!\n const op = cigar[j + 1] as keyof typeof colorMap\n\n if (!continuingFlag) {\n px1 = cx1\n px2 = cx2\n }\n\n const d1 = len / bpPerPxs[0]!\n const d2 = len / bpPerPxs[1]!\n\n if (op === 'M' || op === '=' || op === 'X') {\n cx1 += d1 * rev1\n cx2 += d2 * rev2\n } else if (op === 'D' || op === 'N') {\n cx1 += d1 * rev1\n }\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n else if (op === 'I') {\n cx2 += d2 * rev2\n }\n\n // check that we are even drawing in view here, e.g. that all\n // points are not all less than 0 or greater than width\n if (\n !(\n Math.max(px1, px2, cx1, cx2) < 0 ||\n Math.min(px1, px2, cx1, cx2) > width\n )\n ) {\n // if it is a small feature and not the last element of the\n // CIGAR (which could skip rendering it entire if we did turn\n // it on), then turn on continuing flag\n const isNotLast = j < cigar.length - 2\n if (\n Math.abs(cx1 - px1) <= 1 &&\n Math.abs(cx2 - px2) <= 1 &&\n isNotLast\n ) {\n continuingFlag = true\n } else {\n // allow rendering the dominant color when using continuing flag\n // if the last element of continuing was a large feature, else\n // just use match\n ctx1.fillStyle =\n colorMap[(continuingFlag && d1 > 1) || d2 > 1 ? op : 'M']\n continuingFlag = false\n\n draw(ctx1, px1, cx1, y1, cx2, px2, y2, mid, drawCurves)\n if (ctx3) {\n ctx3.fillStyle = makeColor(idx)\n draw(ctx3, px1, cx1, y1, cx2, px2, y2, mid, drawCurves)\n }\n }\n }\n }\n } else {\n draw(ctx1, x11, x12, y1, x22, x21, y2, mid, drawCurves)\n }\n }\n }\n\n // draw click map\n const ctx2 = model.clickMapCanvas?.getContext('2d')\n if (!ctx2) {\n return\n }\n ctx2.imageSmoothingEnabled = false\n ctx2.clearRect(0, 0, width, height)\n for (let i = 0; i < featPos.length; i++) {\n const feature = featPos[i]!\n const idx = i * unitMultiplier + 1\n ctx2.fillStyle = makeColor(idx)\n\n // too many click map false positives with colored stroked lines\n drawMatchSimple({\n cb: ctx => {\n ctx.fill()\n },\n feature,\n ctx: ctx2,\n drawCurves,\n offsets,\n oobLimit,\n viewWidth: view.width,\n hideTiny: true,\n height,\n })\n }\n return undefined\n}\n\nexport function drawMouseoverSynteny(model: LinearSyntenyDisplayModel) {\n const { clickId, mouseoverId } = model\n const highResolutionScaling = 1\n const view = getContainingView(model) as LinearSyntenyViewModel\n const drawCurves = view.drawCurves\n const height = view.middleComparativeHeight\n const width = view.width\n const ctx = model.mouseoverCanvas?.getContext('2d')\n const offsets = view.views.map(v => v.offsetPx)\n\n if (!ctx) {\n return\n }\n ctx.resetTransform()\n ctx.scale(highResolutionScaling, highResolutionScaling)\n ctx.clearRect(0, 0, width, height)\n const feature1 = model.featMap[mouseoverId || '']\n if (feature1) {\n ctx.fillStyle = 'rgb(0,0,0,0.1)'\n drawMatchSimple({\n cb: ctx => {\n ctx.fill()\n },\n feature: feature1,\n ctx,\n oobLimit,\n viewWidth: view.width,\n drawCurves,\n offsets,\n height,\n })\n }\n const feature2 = model.featMap[clickId || '']\n if (feature2) {\n ctx.strokeStyle = 'rgb(0, 0, 0, 0.9)'\n\n drawMatchSimple({\n cb: ctx => {\n ctx.stroke()\n },\n feature: feature2,\n ctx,\n oobLimit,\n viewWidth: view.width,\n drawCurves,\n offsets,\n height,\n })\n 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./plugins/alignments/src/BamAdapter/BamSlightlyLazyFeature.ts","../../../plugins/alignments/src/BamAdapter/BamAdapter.ts"],"sourcesContent":["import {\n Feature,\n SimpleFeatureSerialized,\n} from '@jbrowse/core/util/simpleFeature'\nimport { BamRecord } from '@gmod/bam'\n\n// locals\nimport { getClip, getMismatches } from '../MismatchParser'\nimport BamAdapter from './BamAdapter'\n\nexport default class BamSlightlyLazyFeature implements Feature {\n // uses parameter properties to automatically create fields on the class\n // https://www.typescriptlang.org/docs/handbook/classes.html#parameter-properties\n constructor(\n private record: BamRecord,\n private adapter: BamAdapter,\n private ref?: string,\n ) {}\n\n _get_name() {\n return this.record.get('name')\n }\n\n _get_type(): string {\n return 'match'\n }\n\n _get_score(): number {\n return this.record.get('mq')\n }\n\n _get_flags(): string {\n return this.record.flags\n }\n\n _get_strand(): number {\n return this.record.isReverseComplemented() ? -1 : 1\n }\n\n _get_pair_orientation() {\n return this.record.isPaired() ? this.record.getPairOrientation() : undefined\n }\n\n _get_next_ref() {\n return this.record.isPaired()\n ? this.adapter.refIdToName(this.record._next_refid())\n : undefined\n }\n\n _get_next_pos() {\n return this.record.isPaired() ? this.record._next_pos() : undefined\n }\n\n _get_next_segment_position() {\n return this.record.isPaired()\n ? `${this.adapter.refIdToName(this.record._next_refid())}:${\n this.record._next_pos() + 1\n }`\n : undefined\n }\n\n _get_seq() {\n return this.record.getReadBases()\n }\n\n qualRaw() {\n return this.record.qualRaw()\n }\n\n set() {}\n\n tags() {\n const properties = Object.getOwnPropertyNames(\n BamSlightlyLazyFeature.prototype,\n )\n\n return [\n ...new Set(\n properties\n .filter(\n prop =>\n prop.startsWith('_get_') &&\n prop !== '_get_mismatches' &&\n prop !== '_get_tags',\n )\n .map(methodName => methodName.replace('_get_', ''))\n .concat(this.record._tags()),\n ),\n ]\n }\n\n id() {\n return `${this.adapter.id}-${this.record.id()}`\n }\n\n get(field: string): any {\n const methodName = `_get_${field}`\n // @ts-expect-error\n if (this[methodName]) {\n // @ts-expect-error\n return this[methodName]()\n }\n return this.record.get(field)\n }\n\n _get_refName() {\n return this.adapter.refIdToName(this.record.seq_id())\n }\n\n parent() {\n return undefined\n }\n\n children() {\n return undefined\n }\n\n pairedFeature() {\n return false\n }\n\n toJSON(): SimpleFeatureSerialized {\n return {\n ...Object.fromEntries(\n this.tags()\n .map(t => [t, this.get(t)])\n .filter(elt => elt[1] !== undefined),\n ),\n uniqueId: this.id(),\n }\n }\n\n _get_mismatches() {\n return getMismatches(\n this.get('CIGAR'),\n this.get('MD'),\n this.get('seq'),\n this.ref,\n this.qualRaw(),\n )\n }\n\n _get_clipPos() {\n const cigar = this.get('CIGAR') || ''\n return getClip(cigar, this.get('strand'))\n }\n}\n","import { BamFile } from '@gmod/bam'\nimport {\n BaseFeatureDataAdapter,\n BaseOptions,\n} from '@jbrowse/core/data_adapters/BaseAdapter'\nimport { Region } from '@jbrowse/core/util/types'\nimport { bytesForRegions, updateStatus, Feature } from '@jbrowse/core/util'\nimport { openLocation } from '@jbrowse/core/util/io'\nimport { ObservableCreate } from '@jbrowse/core/util/rxjs'\nimport { toArray } from 'rxjs/operators'\nimport { firstValueFrom } from 'rxjs'\n\n// locals\nimport BamSlightlyLazyFeature from './BamSlightlyLazyFeature'\nimport { IFilter } from '../shared'\n\ninterface Header {\n idToName: string[]\n nameToId: Record\n}\n\nexport default class BamAdapter extends BaseFeatureDataAdapter {\n private samHeader?: Header\n\n private setupP?: Promise

\n private configureP?: Promise<{\n bam: BamFile\n sequenceAdapter?: BaseFeatureDataAdapter\n }>\n\n // derived classes may not use the same configuration so a custom configure\n // method allows derived classes to override this behavior\n protected async configurePre() {\n const bamLocation = this.getConf('bamLocation')\n const location = this.getConf(['index', 'location'])\n const indexType = this.getConf(['index', 'indexType'])\n const pm = this.pluginManager\n const csi = indexType === 'CSI'\n const bam = new BamFile({\n bamFilehandle: openLocation(bamLocation, pm),\n csiFilehandle: csi ? openLocation(location, pm) : undefined,\n baiFilehandle: !csi ? openLocation(location, pm) : undefined,\n yieldThreadTime: Number.POSITIVE_INFINITY,\n })\n\n const adapterConfig = this.getConf('sequenceAdapter')\n if (adapterConfig && this.getSubAdapter) {\n const { dataAdapter } = await this.getSubAdapter(adapterConfig)\n return {\n bam,\n sequenceAdapter: dataAdapter as BaseFeatureDataAdapter,\n }\n }\n return { bam }\n }\n\n protected async configure() {\n if (!this.configureP) {\n this.configureP = this.configurePre().catch((e: unknown) => {\n this.configureP = undefined\n throw e\n })\n }\n return this.configureP\n }\n\n async getHeader(opts?: BaseOptions) {\n const { bam } = await this.configure()\n return bam.getHeaderText(opts)\n }\n\n private async setupPre(opts?: BaseOptions) {\n const { statusCallback = () => {} } = opts || {}\n const { bam } = await this.configure()\n this.samHeader = await updateStatus(\n 'Downloading index',\n statusCallback,\n async () => {\n const samHeader = await bam.getHeader(opts)\n\n // use the @SQ lines in the header to figure out the\n // mapping between ref ref ID numbers and names\n const idToName: string[] = []\n const nameToId: Record = {}\n samHeader\n ?.filter(l => l.tag === 'SQ')\n .forEach((sqLine, refId) => {\n const SN = sqLine.data.find(item => item.tag === 'SN')\n if (SN) {\n // this is the ref name\n const refName = SN.value\n nameToId[refName] = refId\n idToName[refId] = refName\n }\n })\n\n return { idToName, nameToId }\n },\n )\n return this.samHeader\n }\n\n async setup(opts?: BaseOptions) {\n if (!this.setupP) {\n this.setupP = this.setupPre(opts).catch((e: unknown) => {\n this.setupP = undefined\n throw e\n })\n }\n return this.setupP\n }\n\n async getRefNames(opts?: BaseOptions) {\n const { idToName } = await this.setup(opts)\n return idToName\n }\n\n private async seqFetch(refName: string, start: number, end: number) {\n const { sequenceAdapter } = await this.configure()\n const refSeqStore = sequenceAdapter\n if (!refSeqStore) {\n return undefined\n }\n if (!refName) {\n return undefined\n }\n\n const features = refSeqStore.getFeatures({\n refName,\n start,\n end,\n assemblyName: '',\n })\n\n const seqChunks = await firstValueFrom(features.pipe(toArray()))\n\n let sequence = ''\n seqChunks\n .sort((a, b) => a.get('start') - b.get('start'))\n .forEach(chunk => {\n const chunkStart = chunk.get('start')\n const chunkEnd = chunk.get('end')\n const trimStart = Math.max(start - chunkStart, 0)\n const trimEnd = Math.min(end - chunkStart, chunkEnd - chunkStart)\n const trimLength = trimEnd - trimStart\n const chunkSeq = chunk.get('seq') || chunk.get('residues')\n sequence += chunkSeq.slice(trimStart, trimStart + trimLength)\n })\n\n if (sequence.length !== end - start) {\n throw new Error(\n `sequence fetch failed: fetching ${refName}:${(\n start - 1\n ).toLocaleString()}-${end.toLocaleString()} returned ${sequence.length.toLocaleString()} bases, but should have returned ${(\n end - start\n ).toLocaleString()}`,\n )\n }\n return sequence\n }\n\n getFeatures(\n region: Region & { originalRefName?: string },\n opts?: BaseOptions & {\n filterBy: IFilter\n },\n ) {\n const { refName, start, end, originalRefName } = region\n const { signal, filterBy, statusCallback = () => {} } = opts || {}\n return ObservableCreate(async observer => {\n const { bam } = await this.configure()\n await this.setup(opts)\n const records = await updateStatus(\n 'Downloading alignments',\n statusCallback,\n () => bam.getRecordsForRange(refName, start, end, opts),\n )\n\n await updateStatus('Processing alignments', statusCallback, async () => {\n const {\n flagInclude = 0,\n flagExclude = 0,\n tagFilter,\n readName,\n } = filterBy || {}\n\n for (const record of records) {\n let ref: string | undefined\n if (!record.get('MD')) {\n ref = await this.seqFetch(\n originalRefName || refName,\n record.get('start'),\n record.get('end'),\n )\n }\n\n const flags = record.flags\n if ((flags & flagInclude) !== flagInclude && !(flags & flagExclude)) {\n continue\n }\n\n if (tagFilter) {\n const readVal = record.get(tagFilter.tag)\n const filterVal = tagFilter.value\n if (\n filterVal === '*'\n ? readVal !== undefined\n : `${readVal}` !== `${filterVal}`\n ) {\n continue\n }\n }\n\n if (readName && record.get('name') !== readName) {\n continue\n }\n\n observer.next(new BamSlightlyLazyFeature(record, this, ref))\n }\n observer.complete()\n })\n }, signal)\n }\n\n async getMultiRegionFeatureDensityStats(\n regions: Region[],\n opts?: BaseOptions,\n ) {\n const { bam } = await this.configure()\n // this is a method to avoid calling on htsget adapters\n if (bam.index) {\n const bytes = await bytesForRegions(regions, bam)\n const fetchSizeLimit = this.getConf('fetchSizeLimit')\n return { bytes, fetchSizeLimit }\n }\n return super.getMultiRegionFeatureDensityStats(regions, opts)\n }\n\n freeResources(/* { region } */): void {}\n\n // depends on setup being called before the BAM constructor\n refIdToName(refId: number) {\n return this.samHeader?.idToName[refId]\n 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React from 'react'\nimport { DialogContent, DialogContentText } from '@mui/material'\nimport { Dialog } from '@jbrowse/core/ui'\nimport { observer } from 'mobx-react'\nimport { makeStyles } from 'tss-react/mui'\nimport { DataGrid } from '@mui/x-data-grid'\nimport { AnyConfigurationModel, getConf } from '@jbrowse/core/configuration'\nimport { measureGridWidth } from '@jbrowse/core/util'\n\nconst useStyles = makeStyles()({\n content: {\n minWidth: 600,\n },\n})\n\ninterface TrackWarning {\n configuration: AnyConfigurationModel\n displays: { warnings: { message: string; effect: string }[] }[]\n}\n\nconst WarningDialog = observer(function WarningDialog({\n trackWarnings,\n handleClose,\n}: {\n handleClose: () => void\n trackWarnings: TrackWarning[]\n}) {\n const { classes } = useStyles()\n const rows = [] as {\n name: string\n message: string\n effect: string\n id: string\n }[]\n for (let i = 0; i < trackWarnings.length; i++) {\n const track = trackWarnings[i]!\n const name = getConf(track, 'name')\n const d = track.displays[0]!\n for (let j = 0; j < d.warnings.length; j++) {\n const warning = d.warnings[j]!\n rows.push({ name, ...warning, id: `${i}_${j}` })\n }\n }\n const columns = [\n { field: 'name' },\n { field: 'message', width: measureGridWidth(rows.map(r => r.message)) },\n { field: 'effect', width: measureGridWidth(rows.map(r => r.effect)) },\n ]\n return (\n \n \n \n Found warnings while rendering the dotplot. This is often due to\n out-of-bound features that may indicate the wrong assemblies are being\n used. Check that the query and target are configured correctly, and\n that the right assemblies are being compared.\n \n

\n \n

\n \n \n )\n})\n\nexport default WarningDialog\n","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport usePreviousProps from '@mui/utils/usePreviousProps';\nimport composeClasses from '@mui/utils/composeClasses';\nimport useSlotProps from '@mui/utils/useSlotProps';\nimport useBadge from \"./useBadge.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport badgeClasses, { getBadgeUtilityClass } from \"./badgeClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst RADIUS_STANDARD = 10;\nconst RADIUS_DOT = 4;\nconst useUtilityClasses = ownerState => {\n const {\n color,\n anchorOrigin,\n invisible,\n overlap,\n variant,\n classes = {}\n } = ownerState;\n const slots = {\n root: ['root'],\n badge: ['badge', variant, invisible && 'invisible', `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}`, `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}${capitalize(overlap)}`, `overlap${capitalize(overlap)}`, color !== 'default' && `color${capitalize(color)}`]\n };\n return composeClasses(slots, getBadgeUtilityClass, classes);\n};\nconst BadgeRoot = styled('span', {\n name: 'MuiBadge',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n position: 'relative',\n display: 'inline-flex',\n // For correct alignment with the text.\n verticalAlign: 'middle',\n flexShrink: 0\n});\nconst BadgeBadge = styled('span', {\n name: 'MuiBadge',\n slot: 'Badge',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.badge, styles[ownerState.variant], styles[`anchorOrigin${capitalize(ownerState.anchorOrigin.vertical)}${capitalize(ownerState.anchorOrigin.horizontal)}${capitalize(ownerState.overlap)}`], ownerState.color !== 'default' && styles[`color${capitalize(ownerState.color)}`], ownerState.invisible && styles.invisible];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n flexDirection: 'row',\n flexWrap: 'wrap',\n justifyContent: 'center',\n alignContent: 'center',\n alignItems: 'center',\n position: 'absolute',\n boxSizing: 'border-box',\n fontFamily: theme.typography.fontFamily,\n fontWeight: theme.typography.fontWeightMedium,\n fontSize: theme.typography.pxToRem(12),\n minWidth: RADIUS_STANDARD * 2,\n lineHeight: 1,\n padding: '0 6px',\n height: RADIUS_STANDARD * 2,\n borderRadius: RADIUS_STANDARD,\n zIndex: 1,\n // Render the badge on top of potential ripples.\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeInOut,\n duration: theme.transitions.duration.enteringScreen\n }),\n variants: [...Object.entries(theme.palette).filter(createSimplePaletteValueFilter(['contrastText'])).map(([color]) => ({\n props: {\n color\n },\n style: {\n backgroundColor: (theme.vars || theme).palette[color].main,\n color: (theme.vars || theme).palette[color].contrastText\n }\n })), {\n props: {\n variant: 'dot'\n },\n style: {\n borderRadius: RADIUS_DOT,\n height: RADIUS_DOT * 2,\n minWidth: RADIUS_DOT * 2,\n padding: 0\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'rectangular',\n style: {\n top: 0,\n right: 0,\n transform: 'scale(1) translate(50%, -50%)',\n transformOrigin: '100% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'rectangular',\n style: {\n bottom: 0,\n right: 0,\n transform: 'scale(1) translate(50%, 50%)',\n transformOrigin: '100% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n top: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, -50%)',\n transformOrigin: '0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n bottom: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'circular',\n style: {\n top: '14%',\n right: '14%',\n transform: 'scale(1) translate(50%, -50%)',\n transformOrigin: '100% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'circular',\n style: {\n bottom: '14%',\n right: '14%',\n transform: 'scale(1) translate(50%, 50%)',\n transformOrigin: '100% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'circular',\n style: {\n top: '14%',\n left: '14%',\n transform: 'scale(1) translate(-50%, -50%)',\n transformOrigin: '0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'circular',\n style: {\n bottom: '14%',\n left: '14%',\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: {\n invisible: true\n },\n style: {\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeInOut,\n duration: theme.transitions.duration.leavingScreen\n })\n }\n }]\n})));\nconst Badge = /*#__PURE__*/React.forwardRef(function Badge(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiBadge'\n });\n const {\n anchorOrigin: anchorOriginProp = {\n vertical: 'top',\n horizontal: 'right'\n },\n className,\n classes: classesProp,\n component,\n components = {},\n componentsProps = {},\n children,\n overlap: overlapProp = 'rectangular',\n color: colorProp = 'default',\n invisible: invisibleProp = false,\n max: maxProp = 99,\n badgeContent: badgeContentProp,\n slots,\n slotProps,\n showZero = false,\n variant: variantProp = 'standard',\n ...other\n } = props;\n const {\n badgeContent,\n invisible: invisibleFromHook,\n max,\n displayValue: displayValueFromHook\n } = useBadge({\n max: maxProp,\n invisible: invisibleProp,\n badgeContent: badgeContentProp,\n showZero\n });\n const prevProps = usePreviousProps({\n anchorOrigin: anchorOriginProp,\n color: colorProp,\n overlap: overlapProp,\n variant: variantProp,\n badgeContent: badgeContentProp\n });\n const invisible = invisibleFromHook || badgeContent == null && variantProp !== 'dot';\n const {\n color = colorProp,\n overlap = overlapProp,\n anchorOrigin = anchorOriginProp,\n variant = variantProp\n } = invisible ? prevProps : props;\n const displayValue = variant !== 'dot' ? displayValueFromHook : undefined;\n const ownerState = {\n ...props,\n badgeContent,\n invisible,\n max,\n displayValue,\n showZero,\n anchorOrigin,\n color,\n overlap,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n\n // support both `slots` and `components` for backward compatibility\n const RootSlot = slots?.root ?? components.Root ?? BadgeRoot;\n const BadgeSlot = slots?.badge ?? components.Badge ?? BadgeBadge;\n const rootSlotProps = slotProps?.root ?? componentsProps.root;\n const badgeSlotProps = slotProps?.badge ?? componentsProps.badge;\n const rootProps = useSlotProps({\n elementType: RootSlot,\n externalSlotProps: rootSlotProps,\n externalForwardedProps: other,\n additionalProps: {\n ref,\n as: component\n },\n ownerState,\n className: clsx(rootSlotProps?.className, classes.root, className)\n });\n const badgeProps = useSlotProps({\n elementType: BadgeSlot,\n externalSlotProps: badgeSlotProps,\n ownerState,\n className: clsx(classes.badge, badgeSlotProps?.className)\n });\n return /*#__PURE__*/_jsxs(RootSlot, {\n ...rootProps,\n children: [children, /*#__PURE__*/_jsx(BadgeSlot, {\n ...badgeProps,\n children: displayValue\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Badge.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The anchor of the badge.\n * @default {\n * vertical: 'top',\n * horizontal: 'right',\n * }\n */\n anchorOrigin: PropTypes.shape({\n horizontal: PropTypes.oneOf(['left', 'right']).isRequired,\n vertical: PropTypes.oneOf(['bottom', 'top']).isRequired\n }),\n /**\n * The content rendered within the badge.\n */\n badgeContent: PropTypes.node,\n /**\n * The badge will be added relative to this node.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'default'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The components used for each slot inside.\n *\n * @deprecated use the `slots` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n *\n * @default {}\n */\n components: PropTypes.shape({\n Badge: PropTypes.elementType,\n Root: PropTypes.elementType\n }),\n /**\n * The extra props for the slot components.\n * You can override the existing props or add new ones.\n *\n * @deprecated use the `slotProps` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n *\n * @default {}\n */\n componentsProps: PropTypes.shape({\n badge: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n root: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * If `true`, the badge is invisible.\n * @default false\n */\n invisible: PropTypes.bool,\n /**\n * Max count to show.\n * @default 99\n */\n max: PropTypes.number,\n /**\n * Wrapped shape the badge should overlap.\n * @default 'rectangular'\n */\n overlap: PropTypes.oneOf(['circular', 'rectangular']),\n /**\n * Controls whether the badge is hidden when `badgeContent` is zero.\n * @default false\n */\n showZero: PropTypes.bool,\n /**\n * The props used for each slot inside the Badge.\n * @default {}\n */\n slotProps: PropTypes.shape({\n badge: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n root: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside the Badge.\n * Either a string to use a HTML element or a component.\n * @default {}\n */\n slots: PropTypes.shape({\n badge: PropTypes.elementType,\n root: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'standard'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dot', 'standard']), PropTypes.string])\n} : void 0;\nexport default Badge;","'use client';\n\nimport { usePreviousProps } from '@mui/utils';\n/**\n *\n * Demos:\n *\n * - [Badge](https://mui.com/base-ui/react-badge/#hook)\n *\n * API:\n *\n * - [useBadge API](https://mui.com/base-ui/react-badge/hooks-api/#use-badge)\n */\nfunction useBadge(parameters) {\n const {\n badgeContent: badgeContentProp,\n invisible: invisibleProp = false,\n max: maxProp = 99,\n showZero = false\n } = parameters;\n const prevProps = usePreviousProps({\n badgeContent: badgeContentProp,\n max: maxProp\n });\n let invisible = invisibleProp;\n if (invisibleProp === false && badgeContentProp === 0 && !showZero) {\n invisible = true;\n }\n const {\n badgeContent,\n max = maxProp\n } = invisible ? prevProps : parameters;\n const displayValue = badgeContent && Number(badgeContent) > max ? `${max}+` : badgeContent;\n return {\n badgeContent,\n invisible,\n max,\n displayValue\n };\n}\nexport default useBadge;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getBadgeUtilityClass(slot) {\n return generateUtilityClass('MuiBadge', slot);\n}\nconst badgeClasses = generateUtilityClasses('MuiBadge', ['root', 'badge', 'dot', 'standard', 'anchorOriginTopRight', 'anchorOriginBottomRight', 'anchorOriginTopLeft', 'anchorOriginBottomLeft', 'invisible', 'colorError', 'colorInfo', 'colorPrimary', 'colorSecondary', 'colorSuccess', 'colorWarning', 'overlapRectangular', 'overlapCircular',\n// TODO: v6 remove the overlap value from these class keys\n'anchorOriginTopLeftCircular', 'anchorOriginTopLeftRectangular', 'anchorOriginTopRightCircular', 'anchorOriginTopRightRectangular', 'anchorOriginBottomLeftCircular', 'anchorOriginBottomLeftRectangular', 'anchorOriginBottomRightCircular', 'anchorOriginBottomRightRectangular']);\nexport default badgeClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { keyframes, css, styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { getCircularProgressUtilityClass } from \"./circularProgressClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst SIZE = 44;\nconst circularRotateKeyframe = keyframes`\n 0% {\n transform: rotate(0deg);\n }\n\n 100% {\n transform: rotate(360deg);\n }\n`;\nconst circularDashKeyframe = keyframes`\n 0% {\n stroke-dasharray: 1px, 200px;\n stroke-dashoffset: 0;\n }\n\n 50% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -15px;\n }\n\n 100% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -125px;\n }\n`;\n\n// This implementation is for supporting both Styled-components v4+ and Pigment CSS.\n// A global animation has to be created here for Styled-components v4+ (https://github.com/styled-components/styled-components/blob/main/packages/styled-components/src/utils/errors.md#12).\n// which can be done by checking typeof indeterminate1Keyframe !== 'string' (at runtime, Pigment CSS transform keyframes`` to a string).\nconst rotateAnimation = typeof circularRotateKeyframe !== 'string' ? css`\n animation: ${circularRotateKeyframe} 1.4s linear infinite;\n ` : null;\nconst dashAnimation = typeof circularDashKeyframe !== 'string' ? css`\n animation: ${circularDashKeyframe} 1.4s ease-in-out infinite;\n ` : null;\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant,\n color,\n disableShrink\n } = ownerState;\n const slots = {\n root: ['root', variant, `color${capitalize(color)}`],\n svg: ['svg'],\n circle: ['circle', `circle${capitalize(variant)}`, disableShrink && 'circleDisableShrink']\n };\n return composeClasses(slots, getCircularProgressUtilityClass, classes);\n};\nconst CircularProgressRoot = styled('span', {\n name: 'MuiCircularProgress',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'inline-block',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('transform')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: rotateAnimation || {\n animation: `${circularRotateKeyframe} 1.4s linear infinite`\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color\n },\n style: {\n color: (theme.vars || theme).palette[color].main\n }\n }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n name: 'MuiCircularProgress',\n slot: 'Svg',\n overridesResolver: (props, styles) => styles.svg\n})({\n display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n name: 'MuiCircularProgress',\n slot: 'Circle',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n }\n})(memoTheme(({\n theme\n}) => ({\n stroke: 'currentColor',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('stroke-dashoffset')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: {\n // Some default value that looks fine waiting for the animation to kicks in.\n strokeDasharray: '80px, 200px',\n strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n style: dashAnimation || {\n // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n }\n }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCircularProgress'\n });\n const {\n className,\n color = 'primary',\n disableShrink = false,\n size = 40,\n style,\n thickness = 3.6,\n value = 0,\n variant = 'indeterminate',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n disableShrink,\n size,\n thickness,\n value,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n const circleStyle = {};\n const rootStyle = {};\n const rootProps = {};\n if (variant === 'determinate') {\n const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n circleStyle.strokeDasharray = circumference.toFixed(3);\n rootProps['aria-valuenow'] = Math.round(value);\n circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n rootStyle.transform = 'rotate(-90deg)';\n }\n return /*#__PURE__*/_jsx(CircularProgressRoot, {\n className: clsx(classes.root, className),\n style: {\n width: size,\n height: size,\n ...rootStyle,\n ...style\n },\n ownerState: ownerState,\n ref: ref,\n role: \"progressbar\",\n ...rootProps,\n ...other,\n children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n className: classes.svg,\n ownerState: ownerState,\n viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n className: classes.circle,\n style: circleStyle,\n ownerState: ownerState,\n cx: SIZE,\n cy: SIZE,\n r: (SIZE - thickness) / 2,\n fill: \"none\",\n strokeWidth: thickness\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the shrink animation is disabled.\n * This only works if variant is `indeterminate`.\n * @default false\n */\n disableShrink: chainPropTypes(PropTypes.bool, props => {\n if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n }\n return null;\n }),\n /**\n * The size of the component.\n * If using a number, the pixel unit is assumed.\n * If using a string, you need to provide the CSS unit, for example '3rem'.\n * @default 40\n */\n size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The thickness of the circle.\n * @default 3.6\n */\n thickness: PropTypes.number,\n /**\n * The value of the progress indicator for the determinate variant.\n * Value between 0 and 100.\n * @default 0\n */\n value: PropTypes.number,\n /**\n * The variant to use.\n * Use indeterminate when there is no progress value.\n * @default 'indeterminate'\n */\n variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { elementAcceptingRef, exactProp, unstable_ownerDocument as ownerDocument, unstable_useForkRef as useForkRef, unstable_useEventCallback as useEventCallback } from '@mui/utils';\nimport getReactNodeRef from '@mui/utils/getReactNodeRef';\n\n// TODO: return `EventHandlerName extends `on${infer EventName}` ? Lowercase : never` once generatePropTypes runs with TS 4.1\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nfunction mapEventPropToEvent(eventProp) {\n return eventProp.substring(2).toLowerCase();\n}\nfunction clickedRootScrollbar(event, doc) {\n return doc.documentElement.clientWidth < event.clientX || doc.documentElement.clientHeight < event.clientY;\n}\n/**\n * Listen for click events that occur somewhere in the document, outside of the element itself.\n * For instance, if you need to hide a menu when people click anywhere else on your page.\n *\n * Demos:\n *\n * - [Click-Away Listener](https://mui.com/material-ui/react-click-away-listener/)\n * - [Menu](https://mui.com/material-ui/react-menu/)\n *\n * API:\n *\n * - [ClickAwayListener API](https://mui.com/material-ui/api/click-away-listener/)\n */\nfunction ClickAwayListener(props) {\n const {\n children,\n disableReactTree = false,\n mouseEvent = 'onClick',\n onClickAway,\n touchEvent = 'onTouchEnd'\n } = props;\n const movedRef = React.useRef(false);\n const nodeRef = React.useRef(null);\n const activatedRef = React.useRef(false);\n const syntheticEventRef = React.useRef(false);\n React.useEffect(() => {\n // Ensure that this component is not \"activated\" synchronously.\n // https://github.com/facebook/react/issues/20074\n setTimeout(() => {\n activatedRef.current = true;\n }, 0);\n return () => {\n activatedRef.current = false;\n };\n }, []);\n const handleRef = useForkRef(getReactNodeRef(children), nodeRef);\n\n // The handler doesn't take event.defaultPrevented into account:\n //\n // event.preventDefault() is meant to stop default behaviors like\n // clicking a checkbox to check it, hitting a button to submit a form,\n // and hitting left arrow to move the cursor in a text input etc.\n // Only special HTML elements have these default behaviors.\n const handleClickAway = useEventCallback(event => {\n // Given developers can stop the propagation of the synthetic event,\n // we can only be confident with a positive value.\n const insideReactTree = syntheticEventRef.current;\n syntheticEventRef.current = false;\n const doc = ownerDocument(nodeRef.current);\n\n // 1. IE11 support, which trigger the handleClickAway even after the unbind\n // 2. The child might render null.\n // 3. Behave like a blur listener.\n if (!activatedRef.current || !nodeRef.current || 'clientX' in event && clickedRootScrollbar(event, doc)) {\n return;\n }\n\n // Do not act if user performed touchmove\n if (movedRef.current) {\n movedRef.current = false;\n return;\n }\n let insideDOM;\n\n // If not enough, can use https://github.com/DieterHolvoet/event-propagation-path/blob/master/propagationPath.js\n if (event.composedPath) {\n insideDOM = event.composedPath().includes(nodeRef.current);\n } else {\n insideDOM = !doc.documentElement.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target) || nodeRef.current.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target);\n }\n if (!insideDOM && (disableReactTree || !insideReactTree)) {\n onClickAway(event);\n }\n });\n\n // Keep track of mouse/touch events that bubbled up through the portal.\n const createHandleSynthetic = handlerName => event => {\n syntheticEventRef.current = true;\n const childrenPropsHandler = children.props[handlerName];\n if (childrenPropsHandler) {\n childrenPropsHandler(event);\n }\n };\n const childrenProps = {\n ref: handleRef\n };\n if (touchEvent !== false) {\n childrenProps[touchEvent] = createHandleSynthetic(touchEvent);\n }\n React.useEffect(() => {\n if (touchEvent !== false) {\n const mappedTouchEvent = mapEventPropToEvent(touchEvent);\n const doc = ownerDocument(nodeRef.current);\n const handleTouchMove = () => {\n movedRef.current = true;\n };\n doc.addEventListener(mappedTouchEvent, handleClickAway);\n doc.addEventListener('touchmove', handleTouchMove);\n return () => {\n doc.removeEventListener(mappedTouchEvent, handleClickAway);\n doc.removeEventListener('touchmove', handleTouchMove);\n };\n }\n return undefined;\n }, [handleClickAway, touchEvent]);\n if (mouseEvent !== false) {\n childrenProps[mouseEvent] = createHandleSynthetic(mouseEvent);\n }\n React.useEffect(() => {\n if (mouseEvent !== false) {\n const mappedMouseEvent = mapEventPropToEvent(mouseEvent);\n const doc = ownerDocument(nodeRef.current);\n doc.addEventListener(mappedMouseEvent, handleClickAway);\n return () => {\n doc.removeEventListener(mappedMouseEvent, handleClickAway);\n };\n }\n return undefined;\n }, [handleClickAway, mouseEvent]);\n return /*#__PURE__*/_jsx(React.Fragment, {\n children: /*#__PURE__*/React.cloneElement(children, childrenProps)\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? ClickAwayListener.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the TypeScript types and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The wrapped element.\n */\n children: elementAcceptingRef.isRequired,\n /**\n * If `true`, the React tree is ignored and only the DOM tree is considered.\n * This prop changes how portaled elements are handled.\n * @default false\n */\n disableReactTree: PropTypes.bool,\n /**\n * The mouse event to listen to. You can disable the listener by providing `false`.\n * @default 'onClick'\n */\n mouseEvent: PropTypes.oneOf(['onClick', 'onMouseDown', 'onMouseUp', 'onPointerDown', 'onPointerUp', false]),\n /**\n * Callback fired when a \"click away\" event is detected.\n */\n onClickAway: PropTypes.func.isRequired,\n /**\n * The touch event to listen to. You can disable the listener by providing `false`.\n * @default 'onTouchEnd'\n */\n touchEvent: PropTypes.oneOf(['onTouchEnd', 'onTouchStart', false])\n} : void 0;\nif (process.env.NODE_ENV !== 'production') {\n // eslint-disable-next-line\n ClickAwayListener['propTypes' + ''] = exactProp(ClickAwayListener.propTypes);\n}\nexport { ClickAwayListener };","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getToolbarUtilityClass } from \"./toolbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n disableGutters,\n variant\n } = ownerState;\n const slots = {\n root: ['root', !disableGutters && 'gutters', variant]\n };\n return composeClasses(slots, getToolbarUtilityClass, classes);\n};\nconst ToolbarRoot = styled('div', {\n name: 'MuiToolbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, !ownerState.disableGutters && styles.gutters, styles[ownerState.variant]];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disableGutters,\n style: {\n paddingLeft: theme.spacing(2),\n paddingRight: theme.spacing(2),\n [theme.breakpoints.up('sm')]: {\n paddingLeft: theme.spacing(3),\n paddingRight: theme.spacing(3)\n }\n }\n }, {\n props: {\n variant: 'dense'\n },\n style: {\n minHeight: 48\n }\n }, {\n props: {\n variant: 'regular'\n },\n style: theme.mixins.toolbar\n }]\n})));\nconst Toolbar = /*#__PURE__*/React.forwardRef(function Toolbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiToolbar'\n });\n const {\n className,\n component = 'div',\n disableGutters = false,\n variant = 'regular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableGutters,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ToolbarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Toolbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.\n * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, disables gutter padding.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * The 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BED from '@gmod/bed'\nimport {\n BaseFeatureDataAdapter,\n BaseOptions,\n} from '@jbrowse/core/data_adapters/BaseAdapter'\nimport { openLocation } from '@jbrowse/core/util/io'\nimport { ObservableCreate } from '@jbrowse/core/util/rxjs'\nimport { Region, Feature, isGzip } from '@jbrowse/core/util'\nimport IntervalTree from '@flatten-js/interval-tree'\nimport { unzip } from '@gmod/bgzf-filehandle'\n\n// locals\nimport { featureData } from '../util'\n\nexport default class BedAdapter extends BaseFeatureDataAdapter {\n protected bedFeatures?: Promise<{\n header: string\n features: Record\n parser: BED\n columnNames: string[]\n scoreColumn: string\n colRef: number\n colStart: number\n colEnd: number\n }>\n\n protected intervalTrees: Record<\n string,\n Promise | undefined\n > = {}\n\n public static capabilities = ['getFeatures', 'getRefNames']\n\n private async loadDataP(opts: BaseOptions = {}) {\n const pm = this.pluginManager\n const bedLoc = this.getConf('bedLocation')\n const buf = await openLocation(bedLoc, pm).readFile(opts)\n const buffer = isGzip(buf) ? await unzip(buf) : buf\n // 512MB max chrome string length is 512MB\n if (buffer.length > 536_870_888) {\n throw new Error('Data exceeds maximum string length (512MB)')\n }\n const data = new TextDecoder('utf8', { fatal: true }).decode(buffer)\n const lines = data.split(/\\n|\\r\\n|\\r/).filter(f => !!f)\n const headerLines = []\n let i = 0\n for (; i < lines.length && lines[i]!.startsWith('#'); i++) {\n headerLines.push(lines[i])\n }\n const header = headerLines.join('\\n')\n const features = {} as Record\n for (; i < lines.length; i++) {\n const line = lines[i]!\n const tab = line.indexOf('\\t')\n const refName = line.slice(0, tab)\n if (!features[refName]) {\n features[refName] = []\n }\n features[refName].push(line)\n }\n\n const autoSql = this.getConf('autoSql') as string\n const parser = new BED({ autoSql })\n const columnNames = this.getConf('columnNames')\n const scoreColumn = this.getConf('scoreColumn')\n const colRef = this.getConf('colRef')\n const colStart = this.getConf('colStart')\n const colEnd = this.getConf('colEnd')\n\n return {\n header,\n features,\n parser,\n columnNames,\n scoreColumn,\n colRef,\n colStart,\n colEnd,\n }\n }\n\n private async loadData(opts: BaseOptions = {}) {\n if (!this.bedFeatures) {\n this.bedFeatures = this.loadDataP(opts).catch((e: unknown) => {\n this.bedFeatures = undefined\n throw e\n })\n }\n\n return this.bedFeatures\n }\n\n public async getRefNames(opts: BaseOptions = {}) {\n const { features } = await this.loadData(opts)\n return Object.keys(features)\n }\n\n async getHeader(opts: BaseOptions = {}) {\n const { header } = await this.loadData(opts)\n return header\n }\n\n async getNames() {\n const { header, columnNames } = await this.loadData()\n if (columnNames.length) {\n return columnNames\n }\n const defs = header.split(/\\n|\\r\\n|\\r/).filter(f => !!f)\n const defline = defs.at(-1)\n return defline?.includes('\\t')\n ? defline\n .slice(1)\n .split('\\t')\n .map(field => field.trim())\n : undefined\n }\n\n private async loadFeatureIntervalTreeHelper(refName: string) {\n const { colRef, colStart, colEnd, features, parser, scoreColumn } =\n await this.loadData()\n const lines = features[refName]\n if (!lines) {\n return undefined\n }\n const names = await this.getNames()\n\n const intervalTree = new IntervalTree()\n const ret = lines.map((f, i) => {\n const uniqueId = `${this.id}-${refName}-${i}`\n return featureData(\n f,\n colRef,\n colStart,\n colEnd,\n scoreColumn,\n parser,\n uniqueId,\n names,\n )\n })\n\n for (const obj of ret) {\n intervalTree.insert([obj.get('start'), obj.get('end')], obj)\n }\n return intervalTree\n }\n\n private async loadFeatureIntervalTree(refName: string) {\n if (!this.intervalTrees[refName]) {\n this.intervalTrees[refName] = this.loadFeatureIntervalTreeHelper(\n refName,\n ).catch((e: unknown) => {\n this.intervalTrees[refName] = undefined\n throw e\n })\n }\n return this.intervalTrees[refName]\n }\n\n public getFeatures(query: Region, opts: BaseOptions = {}) {\n return ObservableCreate(async observer => {\n const { start, end, refName } = query\n const intervalTree = await this.loadFeatureIntervalTree(refName)\n intervalTree?.search([start, end]).forEach(f => {\n observer.next(f)\n })\n observer.complete()\n }, opts.signal)\n }\n\n public freeResources(): void {}\n}\n","import BED from '@gmod/bed'\nimport { SimpleFeature } from '@jbrowse/core/util'\n\nexport interface MinimalFeature {\n type: string\n start: number\n end: number\n refName: string\n [key: string]: unknown\n}\nexport interface TranscriptFeat extends MinimalFeature {\n thickStart: number\n thickEnd: number\n blockCount: number\n blockSizes: number[]\n chromStarts: number[]\n refName: string\n strand?: number\n subfeatures: MinimalFeature[]\n}\n\nexport function ucscProcessedTranscript(feature: TranscriptFeat) {\n const {\n subfeatures: oldSubfeatures,\n thickStart,\n thickEnd,\n blockCount,\n blockSizes,\n chromStarts,\n refName,\n strand = 0,\n ...rest\n } = feature\n\n if (!thickStart || !thickEnd || !strand) {\n return feature\n }\n\n const subfeatures: MinimalFeature[] = []\n oldSubfeatures\n .filter(child => child.type === 'block')\n .sort((a, b) => a.start - b.start)\n .forEach(block => {\n const start = block.start\n const end = block.end\n if (thickStart >= end) {\n // left-side UTR\n const prime = strand > 0 ? 'five' : 'three'\n subfeatures.push({\n type: `${prime}_prime_UTR`,\n start,\n end,\n refName,\n })\n } else if (thickStart > start && thickStart < end && thickEnd >= end) {\n // UTR | CDS\n const prime = strand > 0 ? 'five' : 'three'\n subfeatures.push(\n {\n type: `${prime}_prime_UTR`,\n start,\n end: thickStart,\n refName,\n },\n {\n type: 'CDS',\n start: thickStart,\n end,\n refName,\n },\n )\n } else if (thickStart <= start && thickEnd >= end) {\n // CDS\n subfeatures.push({\n type: 'CDS',\n start,\n end,\n refName,\n })\n } else if (thickStart > start && thickStart < end && thickEnd < end) {\n // UTR | CDS | UTR\n const leftPrime = strand > 0 ? 'five' : 'three'\n const rightPrime = strand > 0 ? 'three' : 'five'\n subfeatures.push(\n {\n type: `${leftPrime}_prime_UTR`,\n start,\n end: thickStart,\n refName,\n },\n {\n type: 'CDS',\n start: thickStart,\n end: thickEnd,\n refName,\n },\n {\n type: `${rightPrime}_prime_UTR`,\n start: thickEnd,\n end,\n refName,\n },\n )\n } else if (thickStart <= start && thickEnd > start && thickEnd < end) {\n // CDS | UTR\n const prime = strand > 0 ? 'three' : 'five'\n subfeatures.push(\n {\n type: 'CDS',\n start,\n end: thickEnd,\n refName,\n },\n {\n type: `${prime}_prime_UTR`,\n start: thickEnd,\n end,\n refName,\n },\n )\n } else if (thickEnd <= start) {\n // right-side UTR\n const prime = strand > 0 ? 'three' : 'five'\n subfeatures.push({\n type: `${prime}_prime_UTR`,\n start,\n end,\n refName,\n })\n }\n })\n\n return { ...rest, strand, type: 'mRNA', refName, subfeatures }\n}\n\nfunction defaultParser(fields: string[], line: string) {\n const obj = Object.fromEntries(\n line.split('\\t').map((f, i) => [fields[i]!, f] as const),\n )\n const {\n blockStarts,\n blockCount,\n chromStarts,\n thickEnd,\n thickStart,\n blockSizes,\n ...rest\n } = obj\n\n return {\n ...rest,\n blockStarts: blockStarts?.split(',').map(r => +r),\n chromStarts: chromStarts?.split(',').map(r => +r),\n blockSizes: blockSizes?.split(',').map(r => +r),\n thickStart: thickStart ? +thickStart : undefined,\n thickEnd: thickEnd ? +thickEnd : undefined,\n blockCount: blockCount ? +blockCount : undefined,\n } as Record\n}\n\nexport function makeBlocks({\n start,\n uniqueId,\n refName,\n chromStarts,\n blockCount,\n blockSizes,\n blockStarts,\n}: {\n blockCount: number\n start: number\n uniqueId: string\n refName: string\n chromStarts?: number[]\n blockSizes: number[]\n blockStarts?: number[]\n}) {\n const subfeatures = []\n const starts = chromStarts || blockStarts || []\n for (let b = 0; b < blockCount; b++) {\n const bmin = (starts[b] || 0) + start\n const bmax = bmin + (blockSizes[b] || 0)\n subfeatures.push({\n uniqueId: `${uniqueId}-${b}`,\n start: bmin,\n end: bmax,\n refName,\n type: 'block',\n })\n }\n return subfeatures\n}\nexport function featureData(\n line: string,\n colRef: number,\n colStart: number,\n colEnd: number,\n scoreColumn: string,\n parser: BED,\n uniqueId: string,\n names?: string[],\n) {\n const l = line.split('\\t')\n const refName = l[colRef]!\n const start = +l[colStart]!\n const colSame = colStart === colEnd ? 1 : 0\n const end = +l[colEnd]! + colSame\n const data = names\n ? defaultParser(names, line)\n : parser.parseLine(line, { uniqueId })\n\n const {\n blockCount,\n blockSizes,\n blockStarts,\n chromStarts,\n thickStart,\n thickEnd,\n type,\n score,\n chrom: _1,\n chromStart: _2,\n chromEnd: _3,\n ...rest\n } = data\n const subfeatures = blockCount\n ? makeBlocks({\n start,\n uniqueId,\n refName,\n chromStarts,\n blockCount,\n blockSizes,\n blockStarts,\n })\n : []\n const f = {\n ...rest,\n type,\n score: scoreColumn ? +data[scoreColumn] : score,\n start,\n end,\n refName,\n uniqueId,\n subfeatures,\n }\n return new SimpleFeature({\n id: uniqueId,\n data: isUcscProcessedTranscript(data)\n ? ucscProcessedTranscript({\n thickStart: thickStart!,\n thickEnd: thickEnd!,\n blockCount: blockCount!,\n blockSizes: blockSizes!,\n chromStarts: chromStarts,\n ...f,\n })\n : f,\n })\n}\n\nexport function isUcscProcessedTranscript(f: {\n thickStart?: number\n blockCount?: number\n strand?: number\n}) {\n return f.thickStart && f.blockCount && f.strand !== 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client';\n\nimport * as React from 'react';\nimport createSvgIcon from \"../../utils/createSvgIcon.js\";\n\n/**\n * @ignore - internal component.\n */\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon(/*#__PURE__*/_jsx(\"path\", {\n d: \"M12 12c2.21 0 4-1.79 4-4s-1.79-4-4-4-4 1.79-4 4 1.79 4 4 4zm0 2c-2.67 0-8 1.34-8 4v2h16v-2c0-2.66-5.33-4-8-4z\"\n}), 'Person');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Person from \"../internal/svg-icons/Person.js\";\nimport { getAvatarUtilityClass } from \"./avatarClasses.js\";\nimport useSlot from \"../utils/useSlot.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant,\n colorDefault\n } = ownerState;\n const slots = {\n root: ['root', variant, colorDefault && 'colorDefault'],\n img: ['img'],\n fallback: ['fallback']\n };\n return composeClasses(slots, getAvatarUtilityClass, classes);\n};\nconst AvatarRoot = styled('div', {\n name: 'MuiAvatar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], ownerState.colorDefault && styles.colorDefault];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n justifyContent: 'center',\n flexShrink: 0,\n width: 40,\n height: 40,\n fontFamily: theme.typography.fontFamily,\n fontSize: theme.typography.pxToRem(20),\n lineHeight: 1,\n borderRadius: '50%',\n overflow: 'hidden',\n userSelect: 'none',\n variants: [{\n props: {\n variant: 'rounded'\n },\n style: {\n borderRadius: (theme.vars || theme).shape.borderRadius\n }\n }, {\n props: {\n variant: 'square'\n },\n style: {\n borderRadius: 0\n }\n }, {\n props: {\n colorDefault: true\n },\n style: {\n color: (theme.vars || theme).palette.background.default,\n ...(theme.vars ? {\n backgroundColor: theme.vars.palette.Avatar.defaultBg\n } : {\n backgroundColor: theme.palette.grey[400],\n ...theme.applyStyles('dark', {\n backgroundColor: theme.palette.grey[600]\n })\n })\n }\n }]\n})));\nconst AvatarImg = styled('img', {\n name: 'MuiAvatar',\n slot: 'Img',\n overridesResolver: (props, styles) => styles.img\n})({\n width: '100%',\n height: '100%',\n textAlign: 'center',\n // Handle non-square image.\n objectFit: 'cover',\n // Hide alt text.\n color: 'transparent',\n // Hide the image broken icon, only works on Chrome.\n textIndent: 10000\n});\nconst AvatarFallback = styled(Person, {\n name: 'MuiAvatar',\n slot: 'Fallback',\n overridesResolver: (props, styles) => styles.fallback\n})({\n width: '75%',\n height: '75%'\n});\nfunction useLoaded({\n crossOrigin,\n referrerPolicy,\n src,\n srcSet\n}) {\n const [loaded, setLoaded] = React.useState(false);\n React.useEffect(() => {\n if (!src && !srcSet) {\n return undefined;\n }\n setLoaded(false);\n let active = true;\n const image = new Image();\n image.onload = () => {\n if (!active) {\n return;\n }\n setLoaded('loaded');\n };\n image.onerror = () => {\n if (!active) {\n return;\n }\n setLoaded('error');\n };\n image.crossOrigin = crossOrigin;\n image.referrerPolicy = referrerPolicy;\n image.src = src;\n if (srcSet) {\n image.srcset = srcSet;\n }\n return () => {\n active = false;\n };\n }, [crossOrigin, referrerPolicy, src, srcSet]);\n return loaded;\n}\nconst Avatar = /*#__PURE__*/React.forwardRef(function Avatar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAvatar'\n });\n const {\n alt,\n children: childrenProp,\n className,\n component = 'div',\n slots = {},\n slotProps = {},\n imgProps,\n sizes,\n src,\n srcSet,\n variant = 'circular',\n ...other\n } = props;\n let children = null;\n\n // Use a hook instead of onError on the img element to support server-side rendering.\n const loaded = useLoaded({\n ...imgProps,\n src,\n srcSet\n });\n const hasImg = src || srcSet;\n const hasImgNotFailing = hasImg && loaded !== 'error';\n const ownerState = {\n ...props,\n colorDefault: !hasImgNotFailing,\n component,\n variant\n };\n // This issue explains why this is required: https://github.com/mui/material-ui/issues/42184\n delete ownerState.ownerState;\n const classes = useUtilityClasses(ownerState);\n const [ImgSlot, imgSlotProps] = useSlot('img', {\n className: classes.img,\n elementType: AvatarImg,\n externalForwardedProps: {\n slots,\n slotProps: {\n img: {\n ...imgProps,\n ...slotProps.img\n }\n }\n },\n additionalProps: {\n alt,\n src,\n srcSet,\n sizes\n },\n ownerState\n });\n if (hasImgNotFailing) {\n children = /*#__PURE__*/_jsx(ImgSlot, {\n ...imgSlotProps\n });\n // We only render valid children, non valid children are rendered with a fallback\n // We consider that invalid children are all falsy values, except 0, which is valid.\n } else if (!!childrenProp || childrenProp === 0) {\n children = childrenProp;\n } else if (hasImg && alt) {\n children = alt[0];\n } else {\n children = /*#__PURE__*/_jsx(AvatarFallback, {\n ownerState: ownerState,\n className: classes.fallback\n });\n }\n return /*#__PURE__*/_jsx(AvatarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ...other,\n ownerState: ownerState,\n children: children\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Avatar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Used in combination with `src` or `srcSet` to\n * provide an alt attribute for the rendered `img` element.\n */\n alt: PropTypes.string,\n /**\n * Used to render icon or text elements inside the Avatar if `src` is not set.\n * This can be an element, or just a string.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * [Attributes](https://developer.mozilla.org/en-US/docs/Web/HTML/Element/img#attributes) applied to the `img` element if the component is used to display an image.\n * It can be used to listen for the loading error event.\n */\n imgProps: PropTypes.object,\n /**\n * The `sizes` attribute for the `img` element.\n */\n sizes: PropTypes.string,\n /**\n * The props used for each slot inside.\n * @default {}\n */\n slotProps: PropTypes.shape({\n img: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside.\n * @default {}\n */\n slots: PropTypes.shape({\n img: PropTypes.elementType\n }),\n /**\n * The `src` attribute for the `img` element.\n */\n src: PropTypes.string,\n /**\n * The `srcSet` attribute for the `img` element.\n * Use this attribute for responsive image display.\n */\n srcSet: PropTypes.string,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The shape of the avatar.\n * @default 'circular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['circular', 'rounded', 'square']), PropTypes.string])\n} : void 0;\nexport default Avatar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAvatarUtilityClass(slot) {\n return generateUtilityClass('MuiAvatar', slot);\n}\nconst avatarClasses = generateUtilityClasses('MuiAvatar', ['root', 'colorDefault', 'circular', 'rounded', 'square', 'img', 'fallback']);\nexport default avatarClasses;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getAvatarGroupUtilityClass(slot) {\n return generateUtilityClass('MuiAvatarGroup', slot);\n}\nconst avatarGroupClasses = generateUtilityClasses('MuiAvatarGroup', ['root', 'avatar']);\nexport default avatarGroupClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { isFragment } from 'react-is';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Avatar, { avatarClasses } from \"../Avatar/index.js\";\nimport avatarGroupClasses, { getAvatarGroupUtilityClass } from \"./avatarGroupClasses.js\";\nimport useSlot from \"../utils/useSlot.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst SPACINGS = {\n small: -16,\n medium: -8\n};\nconst useUtilityClasses = ownerState => {\n const {\n classes\n } = ownerState;\n const slots = {\n root: ['root'],\n avatar: ['avatar']\n };\n return composeClasses(slots, getAvatarGroupUtilityClass, classes);\n};\nconst AvatarGroupRoot = styled('div', {\n name: 'MuiAvatarGroup',\n slot: 'Root',\n overridesResolver: (props, styles) => ({\n [`& .${avatarGroupClasses.avatar}`]: styles.avatar,\n ...styles.root\n })\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n flexDirection: 'row-reverse',\n [`& .${avatarClasses.root}`]: {\n border: `2px solid ${(theme.vars || theme).palette.background.default}`,\n boxSizing: 'content-box',\n marginLeft: 'var(--AvatarGroup-spacing, -8px)',\n '&:last-child': {\n marginLeft: 0\n }\n }\n})));\nconst AvatarGroup = /*#__PURE__*/React.forwardRef(function AvatarGroup(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiAvatarGroup'\n });\n const {\n children: childrenProp,\n className,\n component = 'div',\n componentsProps,\n max = 5,\n renderSurplus,\n slotProps = {},\n slots 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\ No newline at end of file diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/491.0011d1ad.chunk.js --- a/x/static/js/491.0011d1ad.chunk.js Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -"use strict";(globalThis.webpackChunk_jbrowse_web=globalThis.webpackChunk_jbrowse_web||[]).push([[491,6833],{86833:(e,t,s)=>{s.r(t),s.d(t,{default:()=>f,makeFeatures:()=>u});var r=s(46377),a=s(6434),n=s(66885),o=s(68584);function u(e){const t=new Map;for(const s of e){const e=new a.A(s),r=e.get("refName");let n=t.get(r);n||(n=[],t.set(r,n)),n.push(e)}for(const e of t.values())e.sort(((e,t)=>e.get("start")-t.get("start")));return t}class f extends r.BaseFeatureDataAdapter{constructor(e,t,s){super(e,t,s);const r=(0,o.readConfObject)(e,"features");this.features=u(r)}async getRefNames(){return[...this.features.keys()]}async 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\n \n JBrowse 2\n \n \n {root.version}\n \n\n \n Here are some resources to get help. Please report the version number\n above when asking questions. Thanks!\n \n

\n \n Question & answer forum\n \n
\n \n Report a bug\n \n
\n \n User guide\n \n
\n \n Documentation\n \n

\n )\n})\n\nexport default HelpWidget\n","import { getPath } from '@mui/system/style';\nimport { alpha } from '@mui/system/colorManipulator';\nconst getTextDecoration = ({\n theme,\n ownerState\n}) => {\n const transformedColor = ownerState.color;\n const color = getPath(theme, `palette.${transformedColor}`, false) || ownerState.color;\n const channelColor = getPath(theme, `palette.${transformedColor}Channel`);\n if ('vars' in theme && channelColor) {\n return `rgba(${channelColor} / 0.4)`;\n }\n return alpha(color, 0.4);\n};\nexport default getTextDecoration;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport { alpha } from '@mui/system/colorManipulator';\nimport elementTypeAcceptingRef from '@mui/utils/elementTypeAcceptingRef';\nimport composeClasses from '@mui/utils/composeClasses';\nimport isFocusVisible from '@mui/utils/isFocusVisible';\nimport capitalize from \"../utils/capitalize.js\";\nimport { styled, useTheme } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Typography from \"../Typography/index.js\";\nimport linkClasses, { getLinkUtilityClass } from \"./linkClasses.js\";\nimport getTextDecoration from \"./getTextDecoration.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst v6Colors = {\n primary: true,\n secondary: true,\n error: true,\n info: true,\n success: true,\n warning: true,\n textPrimary: true,\n textSecondary: true,\n textDisabled: true\n};\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n component,\n focusVisible,\n underline\n } = ownerState;\n const slots = {\n root: ['root', `underline${capitalize(underline)}`, component === 'button' && 'button', focusVisible && 'focusVisible']\n };\n return composeClasses(slots, getLinkUtilityClass, classes);\n};\nconst LinkRoot = styled(Typography, {\n name: 'MuiLink',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[`underline${capitalize(ownerState.underline)}`], ownerState.component === 'button' && styles.button];\n }\n})(memoTheme(({\n theme\n}) => {\n return {\n variants: [{\n props: {\n underline: 'none'\n },\n style: {\n textDecoration: 'none'\n }\n }, {\n props: {\n underline: 'hover'\n },\n style: {\n textDecoration: 'none',\n '&:hover': {\n textDecoration: 'underline'\n }\n }\n }, {\n props: {\n underline: 'always'\n },\n style: {\n textDecoration: 'underline',\n '&:hover': {\n textDecorationColor: 'inherit'\n }\n }\n }, {\n props: ({\n underline,\n ownerState\n }) => underline === 'always' && ownerState.color !== 'inherit',\n style: {\n textDecorationColor: 'var(--Link-underlineColor)'\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n underline: 'always',\n color\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / 0.4)` : alpha(theme.palette[color].main, 0.4)\n }\n })), {\n props: {\n underline: 'always',\n color: 'textPrimary'\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette.text.primaryChannel} / 0.4)` : alpha(theme.palette.text.primary, 0.4)\n }\n }, {\n props: {\n underline: 'always',\n color: 'textSecondary'\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette.text.secondaryChannel} / 0.4)` : alpha(theme.palette.text.secondary, 0.4)\n }\n }, {\n props: {\n underline: 'always',\n color: 'textDisabled'\n },\n style: {\n '--Link-underlineColor': (theme.vars || theme).palette.text.disabled\n }\n }, {\n props: {\n component: 'button'\n },\n style: {\n position: 'relative',\n WebkitTapHighlightColor: 'transparent',\n backgroundColor: 'transparent',\n // Reset default value\n // We disable the focus ring for mouse, touch and keyboard users.\n outline: 0,\n border: 0,\n margin: 0,\n // Remove the margin in Safari\n borderRadius: 0,\n padding: 0,\n // Remove the padding in Firefox\n cursor: 'pointer',\n userSelect: 'none',\n verticalAlign: 'middle',\n MozAppearance: 'none',\n // Reset\n WebkitAppearance: 'none',\n // Reset\n '&::-moz-focus-inner': {\n borderStyle: 'none' // Remove Firefox dotted outline.\n },\n [`&.${linkClasses.focusVisible}`]: {\n outline: 'auto'\n }\n }\n }]\n };\n}));\nconst Link = /*#__PURE__*/React.forwardRef(function Link(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiLink'\n });\n const theme = useTheme();\n const {\n className,\n color = 'primary',\n component = 'a',\n onBlur,\n onFocus,\n TypographyClasses,\n underline = 'always',\n variant = 'inherit',\n sx,\n ...other\n } = props;\n const [focusVisible, setFocusVisible] = React.useState(false);\n const handleBlur = event => {\n if (!isFocusVisible(event.target)) {\n setFocusVisible(false);\n }\n if (onBlur) {\n onBlur(event);\n }\n };\n const handleFocus = event => {\n if (isFocusVisible(event.target)) {\n setFocusVisible(true);\n }\n if (onFocus) {\n onFocus(event);\n }\n };\n const ownerState = {\n ...props,\n color,\n component,\n focusVisible,\n underline,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(LinkRoot, {\n color: color,\n className: clsx(classes.root, className),\n classes: TypographyClasses,\n component: component,\n onBlur: handleBlur,\n onFocus: handleFocus,\n ref: ref,\n ownerState: ownerState,\n variant: variant,\n ...other,\n sx: [...(v6Colors[color] === undefined ? [{\n color\n }] : []), ...(Array.isArray(sx) ? sx : [sx])],\n style: {\n ...other.style,\n ...(underline === 'always' && color !== 'inherit' && !v6Colors[color] && {\n '--Link-underlineColor': getTextDecoration({\n theme,\n ownerState\n })\n })\n }\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Link.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the link.\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['primary', 'secondary', 'success', 'error', 'info', 'warning', 'textPrimary', 'textSecondary', 'textDisabled']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: elementTypeAcceptingRef,\n 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client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { keyframes, css, styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { getCircularProgressUtilityClass } from \"./circularProgressClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst SIZE = 44;\nconst circularRotateKeyframe = keyframes`\n 0% {\n transform: rotate(0deg);\n }\n\n 100% {\n transform: rotate(360deg);\n }\n`;\nconst circularDashKeyframe = keyframes`\n 0% {\n stroke-dasharray: 1px, 200px;\n stroke-dashoffset: 0;\n }\n\n 50% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -15px;\n }\n\n 100% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -125px;\n }\n`;\n\n// This implementation is for supporting both Styled-components v4+ and Pigment CSS.\n// A global animation has to be created here for Styled-components v4+ (https://github.com/styled-components/styled-components/blob/main/packages/styled-components/src/utils/errors.md#12).\n// which can be done by checking typeof indeterminate1Keyframe !== 'string' (at runtime, Pigment CSS transform keyframes`` to a string).\nconst rotateAnimation = typeof circularRotateKeyframe !== 'string' ? css`\n animation: ${circularRotateKeyframe} 1.4s linear infinite;\n ` : null;\nconst dashAnimation = typeof circularDashKeyframe !== 'string' ? css`\n animation: ${circularDashKeyframe} 1.4s ease-in-out infinite;\n ` : null;\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant,\n color,\n disableShrink\n } = ownerState;\n const slots = {\n root: ['root', variant, `color${capitalize(color)}`],\n svg: ['svg'],\n circle: ['circle', `circle${capitalize(variant)}`, disableShrink && 'circleDisableShrink']\n };\n return composeClasses(slots, getCircularProgressUtilityClass, classes);\n};\nconst CircularProgressRoot = styled('span', {\n name: 'MuiCircularProgress',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'inline-block',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('transform')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: rotateAnimation || {\n animation: `${circularRotateKeyframe} 1.4s linear infinite`\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color\n },\n style: {\n color: (theme.vars || theme).palette[color].main\n }\n }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n name: 'MuiCircularProgress',\n slot: 'Svg',\n overridesResolver: (props, styles) => styles.svg\n})({\n display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n name: 'MuiCircularProgress',\n slot: 'Circle',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n }\n})(memoTheme(({\n theme\n}) => ({\n stroke: 'currentColor',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('stroke-dashoffset')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: {\n // Some default value that looks fine waiting for the animation to kicks in.\n strokeDasharray: '80px, 200px',\n strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n style: dashAnimation || {\n // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n }\n }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCircularProgress'\n });\n const {\n className,\n color = 'primary',\n disableShrink = false,\n size = 40,\n style,\n thickness = 3.6,\n value = 0,\n variant = 'indeterminate',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n disableShrink,\n size,\n thickness,\n value,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n const circleStyle = {};\n const rootStyle = {};\n const rootProps = {};\n if (variant === 'determinate') {\n const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n circleStyle.strokeDasharray = circumference.toFixed(3);\n rootProps['aria-valuenow'] = Math.round(value);\n circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n rootStyle.transform = 'rotate(-90deg)';\n }\n return /*#__PURE__*/_jsx(CircularProgressRoot, {\n className: clsx(classes.root, className),\n style: {\n width: size,\n height: size,\n ...rootStyle,\n ...style\n },\n ownerState: ownerState,\n ref: ref,\n role: \"progressbar\",\n ...rootProps,\n ...other,\n children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n className: classes.svg,\n ownerState: ownerState,\n viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n className: classes.circle,\n style: circleStyle,\n ownerState: ownerState,\n cx: SIZE,\n cy: SIZE,\n r: (SIZE - thickness) / 2,\n fill: \"none\",\n strokeWidth: thickness\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the shrink animation is disabled.\n * This only works if variant is `indeterminate`.\n * @default false\n */\n disableShrink: chainPropTypes(PropTypes.bool, props => {\n if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n }\n return null;\n }),\n /**\n * The size of the component.\n * If using a number, the pixel unit is assumed.\n * If using a string, you need to provide the CSS unit, for example '3rem'.\n * @default 40\n */\n size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The thickness of the circle.\n * @default 3.6\n */\n thickness: PropTypes.number,\n /**\n * The value of the progress indicator for the determinate variant.\n * Value between 0 and 100.\n * @default 0\n */\n value: PropTypes.number,\n /**\n * The variant to use.\n * Use indeterminate when there is no progress value.\n * @default 'indeterminate'\n */\n variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { elementAcceptingRef, exactProp, unstable_ownerDocument as ownerDocument, unstable_useForkRef as useForkRef, unstable_useEventCallback as useEventCallback } from '@mui/utils';\nimport getReactNodeRef from '@mui/utils/getReactNodeRef';\n\n// TODO: return `EventHandlerName extends `on${infer EventName}` ? Lowercase : never` once generatePropTypes runs with TS 4.1\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nfunction mapEventPropToEvent(eventProp) {\n return eventProp.substring(2).toLowerCase();\n}\nfunction clickedRootScrollbar(event, doc) {\n return doc.documentElement.clientWidth < event.clientX || doc.documentElement.clientHeight < event.clientY;\n}\n/**\n * Listen for click events that occur somewhere in the document, outside of the element itself.\n * For instance, if you need to hide a menu when people click anywhere else on your page.\n *\n * Demos:\n *\n * - [Click-Away Listener](https://mui.com/material-ui/react-click-away-listener/)\n * - [Menu](https://mui.com/material-ui/react-menu/)\n *\n * API:\n *\n * - [ClickAwayListener API](https://mui.com/material-ui/api/click-away-listener/)\n */\nfunction ClickAwayListener(props) {\n const {\n children,\n disableReactTree = false,\n mouseEvent = 'onClick',\n onClickAway,\n touchEvent = 'onTouchEnd'\n } = props;\n const movedRef = React.useRef(false);\n const nodeRef = React.useRef(null);\n const activatedRef = React.useRef(false);\n const syntheticEventRef = React.useRef(false);\n React.useEffect(() => {\n // Ensure that this component is not \"activated\" synchronously.\n // https://github.com/facebook/react/issues/20074\n setTimeout(() => {\n activatedRef.current = true;\n }, 0);\n return () => {\n activatedRef.current = false;\n };\n }, []);\n const handleRef = useForkRef(getReactNodeRef(children), nodeRef);\n\n // The handler doesn't take event.defaultPrevented into account:\n //\n // event.preventDefault() is meant to stop default behaviors like\n // clicking a checkbox to check it, hitting a button to submit a form,\n // and hitting left arrow to move the cursor in a text input etc.\n // Only special HTML elements have these default behaviors.\n const handleClickAway = useEventCallback(event => {\n // Given developers can stop the propagation of the synthetic event,\n // we can only be confident with a positive value.\n const insideReactTree = syntheticEventRef.current;\n syntheticEventRef.current = false;\n const doc = ownerDocument(nodeRef.current);\n\n // 1. IE11 support, which trigger the handleClickAway even after the unbind\n // 2. The child might render null.\n // 3. Behave like a blur listener.\n if (!activatedRef.current || !nodeRef.current || 'clientX' in event && clickedRootScrollbar(event, doc)) {\n return;\n }\n\n // Do not act if user performed touchmove\n if (movedRef.current) {\n movedRef.current = false;\n return;\n }\n let insideDOM;\n\n // If not enough, can use https://github.com/DieterHolvoet/event-propagation-path/blob/master/propagationPath.js\n if (event.composedPath) {\n insideDOM = event.composedPath().includes(nodeRef.current);\n } else {\n insideDOM = !doc.documentElement.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target) || nodeRef.current.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target);\n }\n if (!insideDOM && (disableReactTree || !insideReactTree)) {\n onClickAway(event);\n }\n });\n\n // Keep track of mouse/touch events that bubbled up through the portal.\n const createHandleSynthetic = handlerName => event => {\n syntheticEventRef.current = true;\n const childrenPropsHandler = children.props[handlerName];\n if (childrenPropsHandler) {\n childrenPropsHandler(event);\n }\n };\n const childrenProps = {\n ref: handleRef\n };\n if (touchEvent !== false) {\n childrenProps[touchEvent] = createHandleSynthetic(touchEvent);\n }\n React.useEffect(() => {\n if (touchEvent !== false) {\n const mappedTouchEvent = mapEventPropToEvent(touchEvent);\n const doc = ownerDocument(nodeRef.current);\n const handleTouchMove = () => {\n movedRef.current = true;\n };\n doc.addEventListener(mappedTouchEvent, handleClickAway);\n doc.addEventListener('touchmove', handleTouchMove);\n return () => {\n doc.removeEventListener(mappedTouchEvent, handleClickAway);\n doc.removeEventListener('touchmove', handleTouchMove);\n };\n }\n return undefined;\n }, [handleClickAway, touchEvent]);\n if (mouseEvent !== false) {\n childrenProps[mouseEvent] = createHandleSynthetic(mouseEvent);\n }\n React.useEffect(() => {\n if (mouseEvent !== false) {\n const mappedMouseEvent = mapEventPropToEvent(mouseEvent);\n const doc = ownerDocument(nodeRef.current);\n doc.addEventListener(mappedMouseEvent, handleClickAway);\n return () => {\n doc.removeEventListener(mappedMouseEvent, handleClickAway);\n };\n }\n return undefined;\n }, [handleClickAway, mouseEvent]);\n return /*#__PURE__*/_jsx(React.Fragment, {\n children: /*#__PURE__*/React.cloneElement(children, childrenProps)\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? ClickAwayListener.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the TypeScript types and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The wrapped element.\n */\n children: elementAcceptingRef.isRequired,\n /**\n * If `true`, the React tree is ignored and only the DOM tree is considered.\n * This prop changes how portaled elements are handled.\n * @default false\n */\n disableReactTree: PropTypes.bool,\n /**\n * The mouse event to listen to. You can disable the listener by providing `false`.\n * @default 'onClick'\n */\n mouseEvent: PropTypes.oneOf(['onClick', 'onMouseDown', 'onMouseUp', 'onPointerDown', 'onPointerUp', false]),\n /**\n * Callback fired when a \"click away\" event is detected.\n */\n onClickAway: PropTypes.func.isRequired,\n /**\n * The touch event to listen to. You can disable the listener by providing `false`.\n * @default 'onTouchEnd'\n */\n touchEvent: PropTypes.oneOf(['onTouchEnd', 'onTouchStart', false])\n} : void 0;\nif (process.env.NODE_ENV !== 'production') {\n // eslint-disable-next-line\n ClickAwayListener['propTypes' + ''] = exactProp(ClickAwayListener.propTypes);\n}\nexport { ClickAwayListener };","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getToolbarUtilityClass } from \"./toolbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n disableGutters,\n variant\n } = ownerState;\n const slots = {\n root: ['root', !disableGutters && 'gutters', variant]\n };\n return composeClasses(slots, getToolbarUtilityClass, classes);\n};\nconst ToolbarRoot = styled('div', {\n name: 'MuiToolbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, !ownerState.disableGutters && styles.gutters, styles[ownerState.variant]];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disableGutters,\n style: {\n paddingLeft: theme.spacing(2),\n paddingRight: theme.spacing(2),\n [theme.breakpoints.up('sm')]: {\n paddingLeft: theme.spacing(3),\n paddingRight: theme.spacing(3)\n }\n }\n }, {\n props: {\n variant: 'dense'\n },\n style: {\n minHeight: 48\n }\n }, {\n props: {\n variant: 'regular'\n },\n style: theme.mixins.toolbar\n }]\n})));\nconst Toolbar = /*#__PURE__*/React.forwardRef(function Toolbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiToolbar'\n });\n const {\n className,\n component = 'div',\n disableGutters = false,\n variant = 'regular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableGutters,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ToolbarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Toolbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.\n * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, disables gutter padding.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'regular'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dense', 'regular']), PropTypes.string])\n} : void 0;\nexport default Toolbar;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getToolbarUtilityClass(slot) {\n return generateUtilityClass('MuiToolbar', slot);\n}\nconst toolbarClasses = generateUtilityClasses('MuiToolbar', ['root', 'gutters', 'regular', 'dense']);\nexport default toolbarClasses;"],"names":["circularRotateKeyframe","circularDashKeyframe","rotateAnimation","dashAnimation","CircularProgressRoot","name","slot","overridesResolver","props","styles","ownerState","root","variant","color","theme","display","variants","style","transition","transitions","create","animation","Object","entries","palette","filter","map","vars","main","CircularProgressSVG","svg","CircularProgressCircle","circle","disableShrink","circleDisableShrink","stroke","strokeDasharray","strokeDashoffset","inProps","ref","className","size","thickness","value","other","classes","slots","useUtilityClasses","circleStyle","rootStyle","rootProps","circumference","Math","PI","toFixed","round","transform","width","height","role","children","viewBox","cx","cy","r","fill","strokeWidth","getCircularProgressUtilityClass","mapEventPropToEvent","eventProp","substring","toLowerCase","ClickAwayListener","disableReactTree","mouseEvent","onClickAway","touchEvent","movedRef","nodeRef","activatedRef","syntheticEventRef","setTimeout","current","handleRef","handleClickAway","event","insideReactTree","doc","documentElement","clientWidth","clientX","clientHeight","clientY","clickedRootScrollbar","insideDOM","composedPath","includes","contains","target","createHandleSynthetic","handlerName","childrenPropsHandler","childrenProps","mappedTouchEvent","handleTouchMove","addEventListener","removeEventListener","mappedMouseEvent","ToolbarRoot","disableGutters","gutters","position","alignItems","paddingLeft","spacing","paddingRight","breakpoints","up","minHeight","mixins","toolbar","component","as","getToolbarUtilityClass"],"sourceRoot":""} 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client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M6 19c0 1.1.9 2 2 2h8c1.1 0 2-.9 2-2V7H6zM19 4h-3.5l-1-1h-5l-1 1H5v2h14z\"\n}), 'Delete');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M19 9h-4V3H9v6H5l7 7zM5 18v2h14v-2z\"\n}), 'GetApp');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M3 18h18v-2H3zm0-5h18v-2H3zm0-7v2h18V6z\"\n}), 'Menu');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M5 4v2h14V4zm0 10h4v6h6v-6h4l-7-7z\"\n}), 'Publish');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M19.14 12.94c.04-.3.06-.61.06-.94 0-.32-.02-.64-.07-.94l2.03-1.58c.18-.14.23-.41.12-.61l-1.92-3.32c-.12-.22-.37-.29-.59-.22l-2.39.96c-.5-.38-1.03-.7-1.62-.94l-.36-2.54c-.04-.24-.24-.41-.48-.41h-3.84c-.24 0-.43.17-.47.41l-.36 2.54c-.59.24-1.13.57-1.62.94l-2.39-.96c-.22-.08-.47 0-.59.22L2.74 8.87c-.12.21-.08.47.12.61l2.03 1.58c-.05.3-.09.63-.09.94s.02.64.07.94l-2.03 1.58c-.18.14-.23.41-.12.61l1.92 3.32c.12.22.37.29.59.22l2.39-.96c.5.38 1.03.7 1.62.94l.36 2.54c.05.24.24.41.48.41h3.84c.24 0 .44-.17.47-.41l.36-2.54c.59-.24 1.13-.56 1.62-.94l2.39.96c.22.08.47 0 .59-.22l1.92-3.32c.12-.22.07-.47-.12-.61zM12 15.6c-1.98 0-3.6-1.62-3.6-3.6s1.62-3.6 3.6-3.6 3.6 1.62 3.6 3.6-1.62 3.6-3.6 3.6\"\n}), 'Settings');","\"use client\";\n\nimport createSvgIcon from './utils/createSvgIcon';\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nexport default createSvgIcon( /*#__PURE__*/_jsx(\"path\", {\n d: \"M18 16.08c-.76 0-1.44.3-1.96.77L8.91 12.7c.05-.23.09-.46.09-.7s-.04-.47-.09-.7l7.05-4.11c.54.5 1.25.81 2.04.81 1.66 0 3-1.34 3-3s-1.34-3-3-3-3 1.34-3 3c0 .24.04.47.09.7L8.04 9.81C7.5 9.31 6.79 9 6 9c-1.66 0-3 1.34-3 3s1.34 3 3 3c.79 0 1.5-.31 2.04-.81l7.12 4.16c-.05.21-.08.43-.08.65 0 1.61 1.31 2.92 2.92 2.92s2.92-1.31 2.92-2.92-1.31-2.92-2.92-2.92\"\n}), 'Share');","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport usePreviousProps from '@mui/utils/usePreviousProps';\nimport composeClasses from '@mui/utils/composeClasses';\nimport useSlotProps from '@mui/utils/useSlotProps';\nimport useBadge from \"./useBadge.js\";\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport badgeClasses, { getBadgeUtilityClass } from \"./badgeClasses.js\";\nimport { jsx as _jsx, jsxs as _jsxs } from \"react/jsx-runtime\";\nconst RADIUS_STANDARD = 10;\nconst RADIUS_DOT = 4;\nconst useUtilityClasses = ownerState => {\n const {\n color,\n anchorOrigin,\n invisible,\n overlap,\n variant,\n classes = {}\n } = ownerState;\n const slots = {\n root: ['root'],\n badge: ['badge', variant, invisible && 'invisible', `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}`, `anchorOrigin${capitalize(anchorOrigin.vertical)}${capitalize(anchorOrigin.horizontal)}${capitalize(overlap)}`, `overlap${capitalize(overlap)}`, color !== 'default' && `color${capitalize(color)}`]\n };\n return composeClasses(slots, getBadgeUtilityClass, classes);\n};\nconst BadgeRoot = styled('span', {\n name: 'MuiBadge',\n slot: 'Root',\n overridesResolver: (props, styles) => styles.root\n})({\n position: 'relative',\n display: 'inline-flex',\n // For correct alignment with the text.\n verticalAlign: 'middle',\n flexShrink: 0\n});\nconst BadgeBadge = styled('span', {\n name: 'MuiBadge',\n slot: 'Badge',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.badge, styles[ownerState.variant], styles[`anchorOrigin${capitalize(ownerState.anchorOrigin.vertical)}${capitalize(ownerState.anchorOrigin.horizontal)}${capitalize(ownerState.overlap)}`], ownerState.color !== 'default' && styles[`color${capitalize(ownerState.color)}`], ownerState.invisible && styles.invisible];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'flex',\n flexDirection: 'row',\n flexWrap: 'wrap',\n justifyContent: 'center',\n alignContent: 'center',\n alignItems: 'center',\n position: 'absolute',\n boxSizing: 'border-box',\n fontFamily: theme.typography.fontFamily,\n fontWeight: theme.typography.fontWeightMedium,\n fontSize: theme.typography.pxToRem(12),\n minWidth: RADIUS_STANDARD * 2,\n lineHeight: 1,\n padding: '0 6px',\n height: RADIUS_STANDARD * 2,\n borderRadius: RADIUS_STANDARD,\n zIndex: 1,\n // Render the badge on top of potential ripples.\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeInOut,\n duration: theme.transitions.duration.enteringScreen\n }),\n variants: [...Object.entries(theme.palette).filter(createSimplePaletteValueFilter(['contrastText'])).map(([color]) => ({\n props: {\n color\n },\n style: {\n backgroundColor: (theme.vars || theme).palette[color].main,\n color: (theme.vars || theme).palette[color].contrastText\n }\n })), {\n props: {\n variant: 'dot'\n },\n style: {\n borderRadius: RADIUS_DOT,\n height: RADIUS_DOT * 2,\n minWidth: RADIUS_DOT * 2,\n padding: 0\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'rectangular',\n style: {\n top: 0,\n right: 0,\n transform: 'scale(1) translate(50%, -50%)',\n transformOrigin: '100% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'rectangular',\n style: {\n bottom: 0,\n right: 0,\n transform: 'scale(1) translate(50%, 50%)',\n transformOrigin: '100% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n top: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, -50%)',\n transformOrigin: '0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'rectangular',\n style: {\n bottom: 0,\n left: 0,\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'circular',\n style: {\n top: '14%',\n right: '14%',\n transform: 'scale(1) translate(50%, -50%)',\n transformOrigin: '100% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'right' && ownerState.overlap === 'circular',\n style: {\n bottom: '14%',\n right: '14%',\n transform: 'scale(1) translate(50%, 50%)',\n transformOrigin: '100% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(50%, 50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'top' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'circular',\n style: {\n top: '14%',\n left: '14%',\n transform: 'scale(1) translate(-50%, -50%)',\n transformOrigin: '0% 0%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, -50%)'\n }\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.anchorOrigin.vertical === 'bottom' && ownerState.anchorOrigin.horizontal === 'left' && ownerState.overlap === 'circular',\n style: {\n bottom: '14%',\n left: '14%',\n transform: 'scale(1) translate(-50%, 50%)',\n transformOrigin: '0% 100%',\n [`&.${badgeClasses.invisible}`]: {\n transform: 'scale(0) translate(-50%, 50%)'\n }\n }\n }, {\n props: {\n invisible: true\n },\n style: {\n transition: theme.transitions.create('transform', {\n easing: theme.transitions.easing.easeInOut,\n duration: theme.transitions.duration.leavingScreen\n })\n }\n }]\n})));\nconst Badge = /*#__PURE__*/React.forwardRef(function Badge(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiBadge'\n });\n const {\n anchorOrigin: anchorOriginProp = {\n vertical: 'top',\n horizontal: 'right'\n },\n className,\n classes: classesProp,\n component,\n components = {},\n componentsProps = {},\n children,\n overlap: overlapProp = 'rectangular',\n color: colorProp = 'default',\n invisible: invisibleProp = false,\n max: maxProp = 99,\n badgeContent: badgeContentProp,\n slots,\n slotProps,\n showZero = false,\n variant: variantProp = 'standard',\n ...other\n } = props;\n const {\n badgeContent,\n invisible: invisibleFromHook,\n max,\n displayValue: displayValueFromHook\n } = useBadge({\n max: maxProp,\n invisible: invisibleProp,\n badgeContent: badgeContentProp,\n showZero\n });\n const prevProps = usePreviousProps({\n anchorOrigin: anchorOriginProp,\n color: colorProp,\n overlap: overlapProp,\n variant: variantProp,\n badgeContent: badgeContentProp\n });\n const invisible = invisibleFromHook || badgeContent == null && variantProp !== 'dot';\n const {\n color = colorProp,\n overlap = overlapProp,\n anchorOrigin = anchorOriginProp,\n variant = variantProp\n } = invisible ? prevProps : props;\n const displayValue = variant !== 'dot' ? displayValueFromHook : undefined;\n const ownerState = {\n ...props,\n badgeContent,\n invisible,\n max,\n displayValue,\n showZero,\n anchorOrigin,\n color,\n overlap,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n\n // support both `slots` and `components` for backward compatibility\n const RootSlot = slots?.root ?? components.Root ?? BadgeRoot;\n const BadgeSlot = slots?.badge ?? components.Badge ?? BadgeBadge;\n const rootSlotProps = slotProps?.root ?? componentsProps.root;\n const badgeSlotProps = slotProps?.badge ?? componentsProps.badge;\n const rootProps = useSlotProps({\n elementType: RootSlot,\n externalSlotProps: rootSlotProps,\n externalForwardedProps: other,\n additionalProps: {\n ref,\n as: component\n },\n ownerState,\n className: clsx(rootSlotProps?.className, classes.root, className)\n });\n const badgeProps = useSlotProps({\n elementType: BadgeSlot,\n externalSlotProps: badgeSlotProps,\n ownerState,\n className: clsx(classes.badge, badgeSlotProps?.className)\n });\n return /*#__PURE__*/_jsxs(RootSlot, {\n ...rootProps,\n children: [children, /*#__PURE__*/_jsx(BadgeSlot, {\n ...badgeProps,\n children: displayValue\n })]\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Badge.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The anchor of the badge.\n * @default {\n * vertical: 'top',\n * horizontal: 'right',\n * }\n */\n anchorOrigin: PropTypes.shape({\n horizontal: PropTypes.oneOf(['left', 'right']).isRequired,\n vertical: PropTypes.oneOf(['bottom', 'top']).isRequired\n }),\n /**\n * The content rendered within the badge.\n */\n badgeContent: PropTypes.node,\n /**\n * The badge will be added relative to this node.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'default'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['default', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * The components used for each slot inside.\n *\n * @deprecated use the `slots` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n *\n * @default {}\n */\n components: PropTypes.shape({\n Badge: PropTypes.elementType,\n Root: PropTypes.elementType\n }),\n /**\n * The extra props for the slot components.\n * You can override the existing props or add new ones.\n *\n * @deprecated use the `slotProps` prop instead. This prop will be removed in v7. See [Migrating from deprecated APIs](https://mui.com/material-ui/migration/migrating-from-deprecated-apis/) for more details.\n *\n * @default {}\n */\n componentsProps: PropTypes.shape({\n badge: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n root: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * If `true`, the badge is invisible.\n * @default false\n */\n invisible: PropTypes.bool,\n /**\n * Max count to show.\n * @default 99\n */\n max: PropTypes.number,\n /**\n * Wrapped shape the badge should overlap.\n * @default 'rectangular'\n */\n overlap: PropTypes.oneOf(['circular', 'rectangular']),\n /**\n * Controls whether the badge is hidden when `badgeContent` is zero.\n * @default false\n */\n showZero: PropTypes.bool,\n /**\n * The props used for each slot inside the Badge.\n * @default {}\n */\n slotProps: PropTypes.shape({\n badge: PropTypes.oneOfType([PropTypes.func, PropTypes.object]),\n root: PropTypes.oneOfType([PropTypes.func, PropTypes.object])\n }),\n /**\n * The components used for each slot inside the Badge.\n * Either a string to use a HTML element or a component.\n * @default {}\n */\n slots: PropTypes.shape({\n badge: PropTypes.elementType,\n root: PropTypes.elementType\n }),\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The variant to use.\n * @default 'standard'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['dot', 'standard']), PropTypes.string])\n} : void 0;\nexport default Badge;","'use client';\n\nimport { usePreviousProps } from '@mui/utils';\n/**\n *\n * Demos:\n *\n * - [Badge](https://mui.com/base-ui/react-badge/#hook)\n *\n * API:\n *\n * - [useBadge API](https://mui.com/base-ui/react-badge/hooks-api/#use-badge)\n */\nfunction useBadge(parameters) {\n const {\n badgeContent: badgeContentProp,\n invisible: invisibleProp = false,\n max: maxProp = 99,\n showZero = false\n } = parameters;\n const prevProps = usePreviousProps({\n badgeContent: badgeContentProp,\n max: maxProp\n });\n let invisible = invisibleProp;\n if (invisibleProp === false && badgeContentProp === 0 && !showZero) {\n invisible = true;\n }\n const {\n badgeContent,\n max = maxProp\n } = invisible ? prevProps : parameters;\n const displayValue = badgeContent && Number(badgeContent) > max ? `${max}+` : badgeContent;\n return {\n badgeContent,\n invisible,\n max,\n displayValue\n };\n}\nexport default useBadge;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getBadgeUtilityClass(slot) {\n return generateUtilityClass('MuiBadge', slot);\n}\nconst badgeClasses = generateUtilityClasses('MuiBadge', ['root', 'badge', 'dot', 'standard', 'anchorOriginTopRight', 'anchorOriginBottomRight', 'anchorOriginTopLeft', 'anchorOriginBottomLeft', 'invisible', 'colorError', 'colorInfo', 'colorPrimary', 'colorSecondary', 'colorSuccess', 'colorWarning', 'overlapRectangular', 'overlapCircular',\n// TODO: v6 remove the overlap value from these class keys\n'anchorOriginTopLeftCircular', 'anchorOriginTopLeftRectangular', 'anchorOriginTopRightCircular', 'anchorOriginTopRightRectangular', 'anchorOriginBottomLeftCircular', 'anchorOriginBottomLeftRectangular', 'anchorOriginBottomRightCircular', 'anchorOriginBottomRightRectangular']);\nexport default badgeClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport chainPropTypes from '@mui/utils/chainPropTypes';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { keyframes, css, styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport capitalize from \"../utils/capitalize.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { getCircularProgressUtilityClass } from \"./circularProgressClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst SIZE = 44;\nconst circularRotateKeyframe = keyframes`\n 0% {\n transform: rotate(0deg);\n }\n\n 100% {\n transform: rotate(360deg);\n }\n`;\nconst circularDashKeyframe = keyframes`\n 0% {\n stroke-dasharray: 1px, 200px;\n stroke-dashoffset: 0;\n }\n\n 50% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -15px;\n }\n\n 100% {\n stroke-dasharray: 100px, 200px;\n stroke-dashoffset: -125px;\n }\n`;\n\n// This implementation is for supporting both Styled-components v4+ and Pigment CSS.\n// A global animation has to be created here for Styled-components v4+ (https://github.com/styled-components/styled-components/blob/main/packages/styled-components/src/utils/errors.md#12).\n// which can be done by checking typeof indeterminate1Keyframe !== 'string' (at runtime, Pigment CSS transform keyframes`` to a string).\nconst rotateAnimation = typeof circularRotateKeyframe !== 'string' ? css`\n animation: ${circularRotateKeyframe} 1.4s linear infinite;\n ` : null;\nconst dashAnimation = typeof circularDashKeyframe !== 'string' ? css`\n animation: ${circularDashKeyframe} 1.4s ease-in-out infinite;\n ` : null;\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n variant,\n color,\n disableShrink\n } = ownerState;\n const slots = {\n root: ['root', variant, `color${capitalize(color)}`],\n svg: ['svg'],\n circle: ['circle', `circle${capitalize(variant)}`, disableShrink && 'circleDisableShrink']\n };\n return composeClasses(slots, getCircularProgressUtilityClass, classes);\n};\nconst CircularProgressRoot = styled('span', {\n name: 'MuiCircularProgress',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[ownerState.variant], styles[`color${capitalize(ownerState.color)}`]];\n }\n})(memoTheme(({\n theme\n}) => ({\n display: 'inline-block',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('transform')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: rotateAnimation || {\n animation: `${circularRotateKeyframe} 1.4s linear infinite`\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n color\n },\n style: {\n color: (theme.vars || theme).palette[color].main\n }\n }))]\n})));\nconst CircularProgressSVG = styled('svg', {\n name: 'MuiCircularProgress',\n slot: 'Svg',\n overridesResolver: (props, styles) => styles.svg\n})({\n display: 'block' // Keeps the progress centered\n});\nconst CircularProgressCircle = styled('circle', {\n name: 'MuiCircularProgress',\n slot: 'Circle',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.circle, styles[`circle${capitalize(ownerState.variant)}`], ownerState.disableShrink && styles.circleDisableShrink];\n }\n})(memoTheme(({\n theme\n}) => ({\n stroke: 'currentColor',\n variants: [{\n props: {\n variant: 'determinate'\n },\n style: {\n transition: theme.transitions.create('stroke-dashoffset')\n }\n }, {\n props: {\n variant: 'indeterminate'\n },\n style: {\n // Some default value that looks fine waiting for the animation to kicks in.\n strokeDasharray: '80px, 200px',\n strokeDashoffset: 0 // Add the unit to fix a Edge 16 and below bug.\n }\n }, {\n props: ({\n ownerState\n }) => ownerState.variant === 'indeterminate' && !ownerState.disableShrink,\n style: dashAnimation || {\n // At runtime for Pigment CSS, `bufferAnimation` will be null and the generated keyframe will be used.\n animation: `${circularDashKeyframe} 1.4s ease-in-out infinite`\n }\n }]\n})));\n\n/**\n * ## ARIA\n *\n * If the progress bar is describing the loading progress of a particular region of a page,\n * you should use `aria-describedby` to point to the progress bar, and set the `aria-busy`\n * attribute to `true` on that region until it has finished loading.\n */\nconst CircularProgress = /*#__PURE__*/React.forwardRef(function CircularProgress(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiCircularProgress'\n });\n const {\n className,\n color = 'primary',\n disableShrink = false,\n size = 40,\n style,\n thickness = 3.6,\n value = 0,\n variant = 'indeterminate',\n ...other\n } = props;\n const ownerState = {\n ...props,\n color,\n disableShrink,\n size,\n thickness,\n value,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n const circleStyle = {};\n const rootStyle = {};\n const rootProps = {};\n if (variant === 'determinate') {\n const circumference = 2 * Math.PI * ((SIZE - thickness) / 2);\n circleStyle.strokeDasharray = circumference.toFixed(3);\n rootProps['aria-valuenow'] = Math.round(value);\n circleStyle.strokeDashoffset = `${((100 - value) / 100 * circumference).toFixed(3)}px`;\n rootStyle.transform = 'rotate(-90deg)';\n }\n return /*#__PURE__*/_jsx(CircularProgressRoot, {\n className: clsx(classes.root, className),\n style: {\n width: size,\n height: size,\n ...rootStyle,\n ...style\n },\n ownerState: ownerState,\n ref: ref,\n role: \"progressbar\",\n ...rootProps,\n ...other,\n children: /*#__PURE__*/_jsx(CircularProgressSVG, {\n className: classes.svg,\n ownerState: ownerState,\n viewBox: `${SIZE / 2} ${SIZE / 2} ${SIZE} ${SIZE}`,\n children: /*#__PURE__*/_jsx(CircularProgressCircle, {\n className: classes.circle,\n style: circleStyle,\n ownerState: ownerState,\n cx: SIZE,\n cy: SIZE,\n r: (SIZE - thickness) / 2,\n fill: \"none\",\n strokeWidth: thickness\n })\n })\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? CircularProgress.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the component.\n * It supports both default and custom theme colors, which can be added as shown in the\n * [palette customization guide](https://mui.com/material-ui/customization/palette/#custom-colors).\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['inherit', 'primary', 'secondary', 'error', 'info', 'success', 'warning']), PropTypes.string]),\n /**\n * If `true`, the shrink animation is disabled.\n * This only works if variant is `indeterminate`.\n * @default false\n */\n disableShrink: chainPropTypes(PropTypes.bool, props => {\n if (props.disableShrink && props.variant && props.variant !== 'indeterminate') {\n return new Error('MUI: You have provided the `disableShrink` prop ' + 'with a variant other than `indeterminate`. This will have no effect.');\n }\n return null;\n }),\n /**\n * The size of the component.\n * If using a number, the pixel unit is assumed.\n * If using a string, you need to provide the CSS unit, for example '3rem'.\n * @default 40\n */\n size: PropTypes.oneOfType([PropTypes.number, PropTypes.string]),\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * The thickness of the circle.\n * @default 3.6\n */\n thickness: PropTypes.number,\n /**\n * The value of the progress indicator for the determinate variant.\n * Value between 0 and 100.\n * @default 0\n */\n value: PropTypes.number,\n /**\n * The variant to use.\n * Use indeterminate when there is no progress value.\n * @default 'indeterminate'\n */\n variant: PropTypes.oneOf(['determinate', 'indeterminate'])\n} : void 0;\nexport default CircularProgress;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getCircularProgressUtilityClass(slot) {\n return generateUtilityClass('MuiCircularProgress', slot);\n}\nconst circularProgressClasses = generateUtilityClasses('MuiCircularProgress', ['root', 'determinate', 'indeterminate', 'colorPrimary', 'colorSecondary', 'svg', 'circle', 'circleDeterminate', 'circleIndeterminate', 'circleDisableShrink']);\nexport default circularProgressClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport { elementAcceptingRef, exactProp, unstable_ownerDocument as ownerDocument, unstable_useForkRef as useForkRef, unstable_useEventCallback as useEventCallback } from '@mui/utils';\nimport getReactNodeRef from '@mui/utils/getReactNodeRef';\n\n// TODO: return `EventHandlerName extends `on${infer EventName}` ? Lowercase : never` once generatePropTypes runs with TS 4.1\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nfunction mapEventPropToEvent(eventProp) {\n return eventProp.substring(2).toLowerCase();\n}\nfunction clickedRootScrollbar(event, doc) {\n return doc.documentElement.clientWidth < event.clientX || doc.documentElement.clientHeight < event.clientY;\n}\n/**\n * Listen for click events that occur somewhere in the document, outside of the element itself.\n * For instance, if you need to hide a menu when people click anywhere else on your page.\n *\n * Demos:\n *\n * - [Click-Away Listener](https://mui.com/material-ui/react-click-away-listener/)\n * - [Menu](https://mui.com/material-ui/react-menu/)\n *\n * API:\n *\n * - [ClickAwayListener API](https://mui.com/material-ui/api/click-away-listener/)\n */\nfunction ClickAwayListener(props) {\n const {\n children,\n disableReactTree = false,\n mouseEvent = 'onClick',\n onClickAway,\n touchEvent = 'onTouchEnd'\n } = props;\n const movedRef = React.useRef(false);\n const nodeRef = React.useRef(null);\n const activatedRef = React.useRef(false);\n const syntheticEventRef = React.useRef(false);\n React.useEffect(() => {\n // Ensure that this component is not \"activated\" synchronously.\n // https://github.com/facebook/react/issues/20074\n setTimeout(() => {\n activatedRef.current = true;\n }, 0);\n return () => {\n activatedRef.current = false;\n };\n }, []);\n const handleRef = useForkRef(getReactNodeRef(children), nodeRef);\n\n // The handler doesn't take event.defaultPrevented into account:\n //\n // event.preventDefault() is meant to stop default behaviors like\n // clicking a checkbox to check it, hitting a button to submit a form,\n // and hitting left arrow to move the cursor in a text input etc.\n // Only special HTML elements have these default behaviors.\n const handleClickAway = useEventCallback(event => {\n // Given developers can stop the propagation of the synthetic event,\n // we can only be confident with a positive value.\n const insideReactTree = syntheticEventRef.current;\n syntheticEventRef.current = false;\n const doc = ownerDocument(nodeRef.current);\n\n // 1. IE11 support, which trigger the handleClickAway even after the unbind\n // 2. The child might render null.\n // 3. Behave like a blur listener.\n if (!activatedRef.current || !nodeRef.current || 'clientX' in event && clickedRootScrollbar(event, doc)) {\n return;\n }\n\n // Do not act if user performed touchmove\n if (movedRef.current) {\n movedRef.current = false;\n return;\n }\n let insideDOM;\n\n // If not enough, can use https://github.com/DieterHolvoet/event-propagation-path/blob/master/propagationPath.js\n if (event.composedPath) {\n insideDOM = event.composedPath().includes(nodeRef.current);\n } else {\n insideDOM = !doc.documentElement.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target) || nodeRef.current.contains(\n // @ts-expect-error returns `false` as intended when not dispatched from a Node\n event.target);\n }\n if (!insideDOM && (disableReactTree || !insideReactTree)) {\n onClickAway(event);\n }\n });\n\n // Keep track of mouse/touch events that bubbled up through the portal.\n const createHandleSynthetic = handlerName => event => {\n syntheticEventRef.current = true;\n const childrenPropsHandler = children.props[handlerName];\n if (childrenPropsHandler) {\n childrenPropsHandler(event);\n }\n };\n const childrenProps = {\n ref: handleRef\n };\n if (touchEvent !== false) {\n childrenProps[touchEvent] = createHandleSynthetic(touchEvent);\n }\n React.useEffect(() => {\n if (touchEvent !== false) {\n const mappedTouchEvent = mapEventPropToEvent(touchEvent);\n const doc = ownerDocument(nodeRef.current);\n const handleTouchMove = () => {\n movedRef.current = true;\n };\n doc.addEventListener(mappedTouchEvent, handleClickAway);\n doc.addEventListener('touchmove', handleTouchMove);\n return () => {\n doc.removeEventListener(mappedTouchEvent, handleClickAway);\n doc.removeEventListener('touchmove', handleTouchMove);\n };\n }\n return undefined;\n }, [handleClickAway, touchEvent]);\n if (mouseEvent !== false) {\n childrenProps[mouseEvent] = createHandleSynthetic(mouseEvent);\n }\n React.useEffect(() => {\n if (mouseEvent !== false) {\n const mappedMouseEvent = mapEventPropToEvent(mouseEvent);\n const doc = ownerDocument(nodeRef.current);\n doc.addEventListener(mappedMouseEvent, handleClickAway);\n return () => {\n doc.removeEventListener(mappedMouseEvent, handleClickAway);\n };\n }\n return undefined;\n }, [handleClickAway, mouseEvent]);\n return /*#__PURE__*/_jsx(React.Fragment, {\n children: /*#__PURE__*/React.cloneElement(children, childrenProps)\n });\n}\nprocess.env.NODE_ENV !== \"production\" ? ClickAwayListener.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the TypeScript types and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The wrapped element.\n */\n children: elementAcceptingRef.isRequired,\n /**\n * If `true`, the React tree is ignored and only the DOM tree is considered.\n * This prop changes how portaled elements are handled.\n * @default false\n */\n disableReactTree: PropTypes.bool,\n /**\n * The mouse event to listen to. You can disable the listener by providing `false`.\n * @default 'onClick'\n */\n mouseEvent: PropTypes.oneOf(['onClick', 'onMouseDown', 'onMouseUp', 'onPointerDown', 'onPointerUp', false]),\n /**\n * Callback fired when a \"click away\" event is detected.\n */\n onClickAway: PropTypes.func.isRequired,\n /**\n * The touch event to listen to. You can disable the listener by providing `false`.\n * @default 'onTouchEnd'\n */\n touchEvent: PropTypes.oneOf(['onTouchEnd', 'onTouchStart', false])\n} : void 0;\nif (process.env.NODE_ENV !== 'production') {\n // eslint-disable-next-line\n ClickAwayListener['propTypes' + ''] = exactProp(ClickAwayListener.propTypes);\n}\nexport { ClickAwayListener };","import { getPath } from '@mui/system/style';\nimport { alpha } from '@mui/system/colorManipulator';\nconst getTextDecoration = ({\n theme,\n ownerState\n}) => {\n const transformedColor = ownerState.color;\n const color = getPath(theme, `palette.${transformedColor}`, false) || ownerState.color;\n const channelColor = getPath(theme, `palette.${transformedColor}Channel`);\n if ('vars' in theme && channelColor) {\n return `rgba(${channelColor} / 0.4)`;\n }\n return alpha(color, 0.4);\n};\nexport default getTextDecoration;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport { alpha } from '@mui/system/colorManipulator';\nimport elementTypeAcceptingRef from '@mui/utils/elementTypeAcceptingRef';\nimport composeClasses from '@mui/utils/composeClasses';\nimport isFocusVisible from '@mui/utils/isFocusVisible';\nimport capitalize from \"../utils/capitalize.js\";\nimport { styled, useTheme } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport createSimplePaletteValueFilter from \"../utils/createSimplePaletteValueFilter.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport Typography from \"../Typography/index.js\";\nimport linkClasses, { getLinkUtilityClass } from \"./linkClasses.js\";\nimport getTextDecoration from \"./getTextDecoration.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst v6Colors = {\n primary: true,\n secondary: true,\n error: true,\n info: true,\n success: true,\n warning: true,\n textPrimary: true,\n textSecondary: true,\n textDisabled: true\n};\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n component,\n focusVisible,\n underline\n } = ownerState;\n const slots = {\n root: ['root', `underline${capitalize(underline)}`, component === 'button' && 'button', focusVisible && 'focusVisible']\n };\n return composeClasses(slots, getLinkUtilityClass, classes);\n};\nconst LinkRoot = styled(Typography, {\n name: 'MuiLink',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, styles[`underline${capitalize(ownerState.underline)}`], ownerState.component === 'button' && styles.button];\n }\n})(memoTheme(({\n theme\n}) => {\n return {\n variants: [{\n props: {\n underline: 'none'\n },\n style: {\n textDecoration: 'none'\n }\n }, {\n props: {\n underline: 'hover'\n },\n style: {\n textDecoration: 'none',\n '&:hover': {\n textDecoration: 'underline'\n }\n }\n }, {\n props: {\n underline: 'always'\n },\n style: {\n textDecoration: 'underline',\n '&:hover': {\n textDecorationColor: 'inherit'\n }\n }\n }, {\n props: ({\n underline,\n ownerState\n }) => underline === 'always' && ownerState.color !== 'inherit',\n style: {\n textDecorationColor: 'var(--Link-underlineColor)'\n }\n }, ...Object.entries(theme.palette).filter(createSimplePaletteValueFilter()).map(([color]) => ({\n props: {\n underline: 'always',\n color\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette[color].mainChannel} / 0.4)` : alpha(theme.palette[color].main, 0.4)\n }\n })), {\n props: {\n underline: 'always',\n color: 'textPrimary'\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette.text.primaryChannel} / 0.4)` : alpha(theme.palette.text.primary, 0.4)\n }\n }, {\n props: {\n underline: 'always',\n color: 'textSecondary'\n },\n style: {\n '--Link-underlineColor': theme.vars ? `rgba(${theme.vars.palette.text.secondaryChannel} / 0.4)` : alpha(theme.palette.text.secondary, 0.4)\n }\n }, {\n props: {\n underline: 'always',\n color: 'textDisabled'\n },\n style: {\n '--Link-underlineColor': (theme.vars || theme).palette.text.disabled\n }\n }, {\n props: {\n component: 'button'\n },\n style: {\n position: 'relative',\n WebkitTapHighlightColor: 'transparent',\n backgroundColor: 'transparent',\n // Reset default value\n // We disable the focus ring for mouse, touch and keyboard users.\n outline: 0,\n border: 0,\n margin: 0,\n // Remove the margin in Safari\n borderRadius: 0,\n padding: 0,\n // Remove the padding in Firefox\n cursor: 'pointer',\n userSelect: 'none',\n verticalAlign: 'middle',\n MozAppearance: 'none',\n // Reset\n WebkitAppearance: 'none',\n // Reset\n '&::-moz-focus-inner': {\n borderStyle: 'none' // Remove Firefox dotted outline.\n },\n [`&.${linkClasses.focusVisible}`]: {\n outline: 'auto'\n }\n }\n }]\n };\n}));\nconst Link = /*#__PURE__*/React.forwardRef(function Link(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiLink'\n });\n const theme = useTheme();\n const {\n className,\n color = 'primary',\n component = 'a',\n onBlur,\n onFocus,\n TypographyClasses,\n underline = 'always',\n variant = 'inherit',\n sx,\n ...other\n } = props;\n const [focusVisible, setFocusVisible] = React.useState(false);\n const handleBlur = event => {\n if (!isFocusVisible(event.target)) {\n setFocusVisible(false);\n }\n if (onBlur) {\n onBlur(event);\n }\n };\n const handleFocus = event => {\n if (isFocusVisible(event.target)) {\n setFocusVisible(true);\n }\n if (onFocus) {\n onFocus(event);\n }\n };\n const ownerState = {\n ...props,\n color,\n component,\n focusVisible,\n underline,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(LinkRoot, {\n color: color,\n className: clsx(classes.root, className),\n classes: TypographyClasses,\n component: component,\n onBlur: handleBlur,\n onFocus: handleFocus,\n ref: ref,\n ownerState: ownerState,\n variant: variant,\n ...other,\n sx: [...(v6Colors[color] === undefined ? [{\n color\n }] : []), ...(Array.isArray(sx) ? sx : [sx])],\n style: {\n ...other.style,\n ...(underline === 'always' && color !== 'inherit' && !v6Colors[color] && {\n '--Link-underlineColor': getTextDecoration({\n theme,\n ownerState\n })\n })\n }\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Link.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The content of the component.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The color of the link.\n * @default 'primary'\n */\n color: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['primary', 'secondary', 'success', 'error', 'info', 'warning', 'textPrimary', 'textSecondary', 'textDisabled']), PropTypes.string]),\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: elementTypeAcceptingRef,\n /**\n * @ignore\n */\n onBlur: PropTypes.func,\n /**\n * @ignore\n */\n onFocus: PropTypes.func,\n /**\n * @ignore\n */\n style: PropTypes.object,\n /**\n * The system prop that allows defining system overrides as well as additional CSS styles.\n */\n sx: PropTypes.oneOfType([PropTypes.arrayOf(PropTypes.oneOfType([PropTypes.func, PropTypes.object, PropTypes.bool])), PropTypes.func, PropTypes.object]),\n /**\n * `classes` prop applied to the [`Typography`](https://mui.com/material-ui/api/typography/) element.\n */\n TypographyClasses: PropTypes.object,\n /**\n * Controls when the link should have an underline.\n * @default 'always'\n */\n underline: PropTypes.oneOf(['always', 'hover', 'none']),\n /**\n * Applies the theme typography styles.\n * @default 'inherit'\n */\n variant: PropTypes /* @typescript-to-proptypes-ignore */.oneOfType([PropTypes.oneOf(['body1', 'body2', 'button', 'caption', 'h1', 'h2', 'h3', 'h4', 'h5', 'h6', 'inherit', 'overline', 'subtitle1', 'subtitle2']), PropTypes.string])\n} : void 0;\nexport default Link;","import generateUtilityClasses from '@mui/utils/generateUtilityClasses';\nimport generateUtilityClass from '@mui/utils/generateUtilityClass';\nexport function getLinkUtilityClass(slot) {\n return generateUtilityClass('MuiLink', slot);\n}\nconst linkClasses = generateUtilityClasses('MuiLink', ['root', 'underlineNone', 'underlineHover', 'underlineAlways', 'button', 'focusVisible']);\nexport default linkClasses;","'use client';\n\nimport * as React from 'react';\nimport PropTypes from 'prop-types';\nimport clsx from 'clsx';\nimport composeClasses from '@mui/utils/composeClasses';\nimport { styled } from \"../zero-styled/index.js\";\nimport memoTheme from \"../utils/memoTheme.js\";\nimport { useDefaultProps } from \"../DefaultPropsProvider/index.js\";\nimport { getToolbarUtilityClass } from \"./toolbarClasses.js\";\nimport { jsx as _jsx } from \"react/jsx-runtime\";\nconst useUtilityClasses = ownerState => {\n const {\n classes,\n disableGutters,\n variant\n } = ownerState;\n const slots = {\n root: ['root', !disableGutters && 'gutters', variant]\n };\n return composeClasses(slots, getToolbarUtilityClass, classes);\n};\nconst ToolbarRoot = styled('div', {\n name: 'MuiToolbar',\n slot: 'Root',\n overridesResolver: (props, styles) => {\n const {\n ownerState\n } = props;\n return [styles.root, !ownerState.disableGutters && styles.gutters, styles[ownerState.variant]];\n }\n})(memoTheme(({\n theme\n}) => ({\n position: 'relative',\n display: 'flex',\n alignItems: 'center',\n variants: [{\n props: ({\n ownerState\n }) => !ownerState.disableGutters,\n style: {\n paddingLeft: theme.spacing(2),\n paddingRight: theme.spacing(2),\n [theme.breakpoints.up('sm')]: {\n paddingLeft: theme.spacing(3),\n paddingRight: theme.spacing(3)\n }\n }\n }, {\n props: {\n variant: 'dense'\n },\n style: {\n minHeight: 48\n }\n }, {\n props: {\n variant: 'regular'\n },\n style: theme.mixins.toolbar\n }]\n})));\nconst Toolbar = /*#__PURE__*/React.forwardRef(function Toolbar(inProps, ref) {\n const props = useDefaultProps({\n props: inProps,\n name: 'MuiToolbar'\n });\n const {\n className,\n component = 'div',\n disableGutters = false,\n variant = 'regular',\n ...other\n } = props;\n const ownerState = {\n ...props,\n component,\n disableGutters,\n variant\n };\n const classes = useUtilityClasses(ownerState);\n return /*#__PURE__*/_jsx(ToolbarRoot, {\n as: component,\n className: clsx(classes.root, className),\n ref: ref,\n ownerState: ownerState,\n ...other\n });\n});\nprocess.env.NODE_ENV !== \"production\" ? Toolbar.propTypes /* remove-proptypes */ = {\n // ┌────────────────────────────── Warning ──────────────────────────────┐\n // │ These PropTypes are generated from the TypeScript type definitions. │\n // │ To update them, edit the d.ts file and run `pnpm proptypes`. │\n // └─────────────────────────────────────────────────────────────────────┘\n /**\n * The Toolbar children, usually a mixture of `IconButton`, `Button` and `Typography`.\n * The Toolbar is a flex container, allowing flex item properties to be used to lay out the children.\n */\n children: PropTypes.node,\n /**\n * Override or extend the styles applied to the component.\n */\n classes: PropTypes.object,\n /**\n * @ignore\n */\n className: PropTypes.string,\n /**\n * The component used for the root node.\n * Either a string to use a HTML element or a component.\n */\n component: PropTypes.elementType,\n /**\n * If `true`, disables gutter padding.\n * @default false\n */\n disableGutters: PropTypes.bool,\n /**\n * The 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A=0;A{const[A,r]=ee(e,t);t+=r;const[n,o]=ee(e,t);t+=o;const i=[];for(let A=0;A>16&255)+String.fromCharCode(A>>8&255)+String.fromCharCode(255&A),{value:o,offset:a}=ce(e,t);t=a,i.push({key:n,value:o})}return{value:{mapSize:A,ents:i,mapCount:n},offset:t}}}}function he(e){let t=4;return t+=20,t+=9,t+=9,t+=10,{maxLength:52,parser:(t,A)=>{const r=t,n=new DataView(r.buffer,r.byteOffset,r.length).getInt32(A,!0);A+=4;const[o,i]=ee(t,A);A+=i;const[a,s]=ee(t,A);A+=s;const[g,c]=ee(t,A);A+=c;const[f,I]=ee(t,A);A+=I;let h,C=0;if(e>=3){const[e,r]=te(t,A);C=e,A+=r}else if(2===e){const[e,r]=ee(t,A);C=e,A+=r}else console.warn("setting recordCounter=0");if(e>1){const[e,r]=te(t,A);h=e,A+=r}const[d,l]=ee(t,A);A+=l;const[u,B]=ee(t,A);return{value:{length:n,refSeqId:o,refSeqStart:a,alignmentSpan:g,numBlocks:d,numLandmarks:u,numBases:h,recordCounter:C,numRecords:f},offset:A+=B}}}}function Ce(e){return{parser:(t,A)=>{const r=t,n=new DataView(r.buffer,r.byteOffset,r.length),[o,i]=ee(t,A);A+=i;const a=[];for(let e=0;e=3&&(s=n.getUint32(A,!0),A+=4),{value:{...void 0===s?{}:{crc32:s},numLandmarks:o,landmarks:a},offset:A}},maxLength:e=>5+5*e+4}}function de(e){return{cramFileDefinition:ne(),cramBlockHeader:{parser:(e,t=0)=>{const A=e,r=new DataView(A.buffer,A.byteOffset,A.length);let n=0;const o=r.getUint8(n),i=["raw","gzip","bzip2","lzma","rans","rans4x16","arith","fqzcomp","tok3"][o];if(!i)throw new Error(`compression method number ${o} not implemented`);n+=1;const a=r.getUint8(n),s=["FILE_HEADER","COMPRESSION_HEADER","MAPPED_SLICE_HEADER","UNMAPPED_SLICE_HEADER","EXTERNAL_DATA","CORE_DATA"][a];if(!s)throw new Error(`invalid block content type id ${a}`);n+=1;const[g,c]=ee(e,n);n+=c;const[f,I]=ee(e,n);n+=I;const[h,C]=ee(e,n);return n+=C,{offset:n,value:{uncompressedSize:h,compressedSize:f,contentId:g,contentType:s,compressionMethod:i}}},maxLength:17},cramBlockCrc32:{parser:(e,t)=>{const A=e,r=new DataView(A.buffer,A.byteOffset,A.length).getUint32(t,!0);return{offset:t+=4,value:{crc32:r}}},maxLength:4},cramDataSeriesEncodingMap:fe(),cramTagEncodingMap:Ie(),cramCompressionHeader:{parser:(e,t)=>{const{value:A,offset:r}=((e,t)=>{const A=e,r=new DataView(A.buffer,A.byteOffset,A.length),[n,o]=ee(e,t);t+=o;const[i,a]=ee(e,t);t+=a;const s=[];for(let A=0;A{const[A,r]=ee(e,t);t+=r;const n=e.subarray(t,t+A);t+=A;const o=[];let i=0,a=0;for(;ai&&o.push(oe(n,i,a)),{value:{size:A,ents:o},offset:t}})(e,t);s.push({key:A,value:n.ents}),t=r}}}return{value:{mapSize:n,mapCount:i,ents:s},offset:t}})(e,t);t=r;const{value:n,offset:o}=fe().parser(e,t);t=o;const{value:i,offset:a}=Ie().parser(e,t);return t=a,{value:{dataSeriesEncoding:ie(n),preservation:ie(A),tagEncoding:ie(i)},offset:t}}},cramEncoding:{parser:(e,t)=>ce(e,t)},cramUnmappedSliceHeader:se(e),cramMappedSliceHeader:ge(e),cramContainerHeader1:he(e),cramContainerHeader2:Ce(e)}}function le(e){let t="";for(let A=0;A1&&-2===r.parsedContent.refSeqId?t("RI"):r.parsedContent.refSeqId,I=t("RL");let h=t("AP");A.APdelta&&(h+=i.lastAlignmentStart),i.lastAlignmentStart=h;const C=t("RG");let d,l,u,B;if(A.readNamesIncluded&&(d=le(t("RN"))),m.isDetached(c)){const e=t("MF");let r;A.readNamesIncluded||(r=le(t("RN")),d=r);const n=t("NS"),o=t("NP");(e||n>-1)&&(l={mateFlags:e,mateSequenceId:n,mateAlignmentStart:o,mateReadName:r}),u=t("TS"),y.isUnmapped(e)&&(g=w.setMateUnmapped(g)),y.isOnNegativeStrand(e)&&(g=w.setMateReverseComplemented(g))}else m.isWithMateDownstream(c)&&(B=t("NF")+s+1);const Q=t("TL");if(Q<0)throw new U("invalid TL index");const E={},p=A.getTagNames(Q),v=p.length;for(let t=0;t1?"SC":"IN"],X:["number","BS"],D:["number","DL"],I:["string","IN"],i:["character","BA"],b:["string","BB"],q:["numArray","QQ"],Q:["number","QS"],H:["number","HC"],P:["number","PD"],N:["number","RS"]}[t];if(!g)throw new U(`invalid read feature code "${t}"`);let c=s(g);const f={B:["number","QS"]}[t];f&&(c=[c,s(f)]),o+=r;const I=o;i+=r;const h=i;"D"===t||"N"===t?i+=c:"I"===t||"S"===t?i-=c.length:"i"===t&&(i-=1),a[e]={code:t,pos:I,refPos:h,data:c}}return a}(h,e,t,0,a)),S=I,D)for(const{code:e,data:t}of D)"D"===e||"N"===e?S+=t:"I"===e||"S"===e?S-=t.length:"i"===e&&(S-=1);if(Number.isNaN(S)&&(console.warn(`${d||`${f}:${h}`} record has invalid read features`),S=I),b=t("MQ"),m.isPreservingQualityScores(c)){N=new Array(I);for(let e=0;e=0){const n=e[A.mateRecordNumber];if(!n)throw new U("intra-slice mate record not found, this file seems malformed");r.push(...t(n))}return r}(A),n=r.map((e=>e.alignmentStart)),o=r.map((e=>e.alignmentStart+e.readLength-1)),i=Math.max(...o)-Math.min(...n)+1;i>=0&&r.forEach((e=>{if(void 0!==e.templateLength)throw new U("mate pair group has some members that have template lengths already, this file seems malformed");e.templateLength=i}))}(e,0,A):function(e,t){const A=Math.min(e.alignmentStart,t.alignmentStart),r=Math.max(e.alignmentStart+e.readLength-1,t.alignmentStart+t.readLength-1)-A+1;e.templateLength=r,t.templateLength=r}(A,r)),A.mateRecordNumber=void 0}class Ee{constructor(e,t,A){this.container=e,this.containerPosition=t,this.sliceSize=A,this.file=e.file}async getHeader(){const{majorVersion:e}=await this.file.getDefinition(),t=de(e),A=await this.container.getHeader();if(!A)throw new Error("no container header detected");const r=await this.file.readBlock(A._endPosition+this.containerPosition);if(void 0===r)throw new Error("block header undefined");if("MAPPED_SLICE_HEADER"===r.contentType){const e=Ae(r.content,t.cramMappedSliceHeader.parser,0,A._endPosition);return{...r,parsedContent:e}}if("UNMAPPED_SLICE_HEADER"===r.contentType){const e=Ae(r.content,t.cramUnmappedSliceHeader.parser,0,A._endPosition);return{...r,parsedContent:e}}throw new U(`error reading slice header block, invalid content type ${r.contentType}`)}async getBlocks(){const e=await this.getHeader();let t=e._endPosition;const A=new Array(e.parsedContent.numBlocks);for(let e=0;e{"EXTERNAL_DATA"===e.contentType&&(t[e.contentId]=e)})),t}async getBlockByContentId(e){return(await this._getBlocksContentIdIndex())[e]}async getReferenceRegion(){const e=(await this.getHeader()).parsedContent;if(!ae(e))throw new Error("slice header not mapped");if(e.refSeqId<0)return;const t=await this.container.getCompressionScheme();if(void 0===t)throw new Error("compression scheme undefined");if(e.refBaseBlockId>=0){const t=await this.getBlockByContentId(e.refBaseBlockId);if(!t)throw new U("embedded reference specified, but reference block does not exist");return{seq:t.data.toString("utf8"),start:e.refSeqStart,end:e.refSeqStart+e.refSeqSpan-1,span:e.refSeqSpan}}if(t.referenceRequired||this.file.fetchReferenceSequenceCallback){if(!this.file.fetchReferenceSequenceCallback)throw new Error("reference sequence not embedded, and seqFetch callback not provided, cannot fetch reference sequence");const t=await this.file.fetchReferenceSequenceCallback(e.refSeqId,e.refSeqStart,e.refSeqStart+e.refSeqSpan-1);if(t.length!==e.refSeqSpan)throw new _("seqFetch callback returned a reference sequence of the wrong length");return{seq:t,start:e.refSeqStart,end:e.refSeqStart+e.refSeqSpan-1,span:e.refSeqSpan}}}getAllRecords(){return this.getRecords((()=>!0))}async _fetchRecords(){var e,t;const{majorVersion:A}=await this.file.getDefinition(),r=await this.container.getCompressionScheme();if(void 0===r)throw new Error("compression scheme undefined");const n=await this.getHeader(),o=await this._getBlocksContentIdIndex();if(A>1&&this.file.options.checkSequenceMD5&&ae(n.parsedContent)&&n.parsedContent.refSeqId>=0&&"0000000000000000"!==(null===(e=n.parsedContent.md5)||void 0===e?void 0:e.join(""))){const e=await this.getReferenceRegion();if(e){const{seq:A,start:r,end:o}=e,i=function(e){return V()(e.toUpperCase().replaceAll(/[^\u0021-\u007e]/g,""))}(A),a=null===(t=n.parsedContent.md5)||void 0===t?void 0:t.map((e=>(e<16?"0":"")+e.toString(16))).join("");if(i!==a)throw new U(`MD5 checksum reference mismatch for ref ${n.parsedContent.refSeqId} pos ${r}..${o}. recorded MD5: ${a}, calculated MD5: ${i}`)}}const i=await this.getCoreDataBlock(),a={lastAlignmentStart:ae(n.parsedContent)?n.parsedContent.refSeqStart:0,coreBlock:{bitPosition:7,bytePosition:0},externalBlocks:{map:new Map,getCursor(e){let t=this.map.get(e);return void 0===t&&(t={bitPosition:7,bytePosition:0},this.map.set(e,t)),t}}},s=e=>{const t=r.getCodecForDataSeries(e);if(!t)throw new U(`no codec defined for ${e} data series`);return t.decode(this,i,o,a)},g=new Array(n.parsedContent.numRecords);for(let e=0;e=0&&Qe(g,e,g[e],g[t])}return g}async getRecords(e){const t=this.container.filePosition+this.containerPosition;let A=this.file.featureCache.get(t.toString());A||(A=this._fetchRecords(),this.file.featureCache.set(t.toString(),A));const r=(await A).filter(e);if(r.length&&this.file.fetchReferenceSequenceCallback){const e=await this.getHeader();if(ae(e.parsedContent)&&(e.parsedContent.refSeqId>=0||-2===e.parsedContent.refSeqId)){const t=e.parsedContent.refSeqId>=0?e.parsedContent.refSeqId:void 0,A=await this.container.getCompressionScheme();if(void 0===A)throw new Error("compression scheme undefined");const n={};for(const e of r){const A=void 0!==t?t:e.sequenceId;let r=n[A];r||(r={id:A,start:e.alignmentStart,end:Number.NEGATIVE_INFINITY,seq:null},n[A]=r);const o=e.alignmentStart+(e.lengthOnRef||e.readLength)-1;o>r.end&&(r.end=o),e.alignmentStart{-1!==e.id&&e.start<=e.end&&this.file.fetchReferenceSequenceCallback&&(e.seq=await this.file.fetchReferenceSequenceCallback(e.id,e.start,e.end))})));for(const e of r){const r=n[void 0!==t?t:e.sequenceId];if(null==r?void 0:r.seq){const t=r.seq;e.addReferenceSequence({...r,seq:t},A)}}}}return r}}"getHeader getBlocks _getBlocksContentIdIndex".split(" ").forEach((e=>{re(Ee,e)}));class we{constructor(e,t){this.parameters=e,this.dataType=t}}class me extends we{constructor(e,t,A){super(e,t),this.instantiateCodec=A}decode(e,t,A,r){const n=this._getLengthCodec().decode(e,t,A,r),o=this._getDataCodec(),i=new Uint8Array(n);for(let a=0;a{re(me,e)}));const ye={1:class extends we{constructor(e,t){if(super(e,t),"int"===this.dataType)this._decodeData=this._decodeInt;else{if("byte"!==this.dataType)throw new M(`${this.dataType} decoding not yet implemented by EXTERNAL codec`);this._decodeData=this._decodeByte}}decode(e,t,A,r){const{blockContentId:n}=this.parameters,o=A[n];if(!o)throw new U(`no block found with content ID ${n}}`);const i=r.externalBlocks.getCursor(n);return this._decodeData(o,i)}_decodeInt(e,t){const[A,r]=ee(e.content,t.bytePosition);return t.bytePosition=t.bytePosition+r,A}_decodeByte(e,t){if(t.bytePosition>=e.content.length)throw new $("attempted to read beyond end of block. this file seems truncated.");return e.content[t.bytePosition++]}},3:class extends we{constructor(e,t){if(super(e,t),this.codes={},this.codeBook={},this.sortedCodes=[],this.sortedValuesByBitCode=[],this.sortedBitCodes=[],this.sortedBitLengthsByBitCode=[],this.bitCodeToValue=[],!["byte","int"].includes(this.dataType))throw new TypeError(`${this.dataType} decoding not yet implemented by HUFFMAN_INT codec`);this.buildCodeBook(),this.buildCodes(),this.buildCaches(),0===this.sortedCodes[0].bitLength&&(this._decode=this._decodeZeroLengthCode)}buildCodeBook(){let e=new Array(this.parameters.numCodes);for(let t=0;te.bitLength-t.bitLength||e.symbol-t.symbol)),this.codeBook={},e.forEach((e=>{this.codeBook[e.bitLength]||(this.codeBook[e.bitLength]=[]),this.codeBook[e.bitLength].push(e.symbol)}))}buildCodes(){this.codes={};let e=0,t=-1;Object.entries(this.codeBook).forEach((([A,r])=>{const n=Number.parseInt(A,10);r.forEach((A=>{const r={bitLength:n,value:A,bitCode:0};t+=1;const o=n-e;if(t<<=o,r.bitCode=t,e+=o,function(e){let t=e-(e>>1)&1431655765;return t=(858993459&t)+(t>>2&858993459),16843009*(t+(t>>4)&252645135)>>24}(t)>n)throw new U("Symbol out of range");this.codes[A]=r}))}))}buildCaches(){this.sortedCodes=Object.values(this.codes).sort(((e,t)=>e.bitLength-t.bitLength||e.bitCode-t.bitCode)),this.sortedValuesByBitCode=this.sortedCodes.map((e=>e.value)),this.sortedBitCodes=this.sortedCodes.map((e=>e.bitCode)),this.sortedBitLengthsByBitCode=this.sortedCodes.map((e=>e.bitLength));const e=Math.max(...this.sortedBitCodes);this.bitCodeToValue=new Array(e+1).fill(-1);for(let e=0;e-1&&this.sortedBitLengthsByBitCode[A]===t)return this.sortedValuesByBitCode[A];for(let A=e;this.sortedCodes[A+1].bitLength===t&&A>6&3]="C",t[0][e[0]>>4&3]="G",t[0][e[0]>>2&3]="T",t[0][3&e[0]]="N",t[1][e[1]>>6&3]="A",t[1][e[1]>>4&3]="G",t[1][e[1]>>2&3]="T",t[1][3&e[1]]="N",t[2][e[2]>>6&3]="A",t[2][e[2]>>4&3]="C",t[2][e[2]>>2&3]="T",t[2][3&e[2]]="N",t[3][e[3]>>6&3]="A",t[3][e[3]>>4&3]="C",t[3][e[3]>>2&3]="G",t[3][3&e[3]]="N",t[4][e[4]>>6&3]="A",t[4][e[4]>>4&3]="C",t[4][e[4]>>2&3]="G",t[4][3&e[4]]="T",t}(e.preservation.SM),this.dataSeriesEncoding=e.dataSeriesEncoding,this.tagEncoding=e.tagEncoding}getCodecForTag(e){const t=this.tagCodecCache[e];if(t)return t;{const t=this.tagEncoding[e];if(!t)throw new Error("Error, no tag encoding");const A=pe(t,"byteArray");return this.tagCodecCache[e]=A,A}}getTagNames(e){return this.tagIdsDictionary[e]}getCodecForDataSeries(e){let t=this.dataSeriesCodecCache[e];if(void 0===t){const A=this.dataSeriesEncoding[e];if(A){const r=ve[e];if(!r)throw new U(`data series name ${e} not defined in file compression header`);t=pe(A,r),this.dataSeriesCodecCache[e]=t}}return t}toJSON(){const e={};return Object.keys(this).forEach((t=>{t.endsWith("Cache")||(e[t]=this[t])})),e}}class Se{constructor(e,t){this.file=e,this.filePosition=t}getHeader(){return this._readContainerHeader(this.filePosition)}async getCompressionHeaderBlock(){const e=await this.getHeader();if(!(null==e?void 0:e.numRecords))return null;const{majorVersion:t}=await this.file.getDefinition(),A=de(t),r=await this.getFirstBlock();if(void 0===r)return;if("COMPRESSION_HEADER"!==r.contentType)throw new U(`invalid content type ${r.contentType} in compression header block`);const n=Ae(r.content,A.cramCompressionHeader.parser,0,r.contentPosition);return{...r,parsedContent:n}}async getFirstBlock(){const e=await this.getHeader();if(e)return this.file.readBlock(e._endPosition)}async getCompressionScheme(){const e=await this.getCompressionHeaderBlock();if(e)return new De(e.parsedContent)}getSlice(e,t){return new Ee(this,e,t)}async _readContainerHeader(e){const{majorVersion:t}=await this.file.getDefinition(),A=de(t),{cramContainerHeader1:r,cramContainerHeader2:n}=A,{size:o}=await this.file.stat();if(e>=o)return void console.warn(`pos:${e}>=fileSize:${o} in cram container`);const i=v.hp.allocUnsafe(r.maxLength);await this.file.read(i,0,r.maxLength,e);const a=Ae(i,r.parser),s=-128&(g=a.numLandmarks)?-16384&g?-2097152&g?-268435456&g?5:4:3:2:1;var g;if(e+a.length>=o)return void console.warn(`container at ${e} is beyond fileSize:${o}, skipping`);const c=v.hp.allocUnsafe(n.maxLength(a.numLandmarks));await this.file.read(c,0,n.maxLength(a.numLandmarks),e+a._size-s);const f=Ae(c,n.parser);return this.file.validateChecksums&&void 0!==f.crc32&&await this.file.checkCrc32(e,a._size+f._size-s-4,f.crc32,`container header beginning at position ${e}`),Object.assign(a,f,{_size:a._size+f._size-s,_endPosition:a._size+f._size-s+e})}}"getHeader getCompressionHeaderBlock getCompressionScheme".split(" ").forEach((e=>{re(Se,e)}));var be=A(45834);function Ne(e,t,A){if(A)return A;if(e)return new be.Tx(e);if(t)return new be.EY(t);throw new Error("no url, path, or filehandle provided, cannot open")}function Re(e){const t=e.split(/\r?\n/),A=[];for(const e of t){const[t,...r]=e.split(/\t/);t&&A.push({tag:t.slice(1),data:r.map((e=>{const t=e.indexOf(":");return-1!==t?{tag:e.slice(0,t),value:e.slice(t+1)}:{tag:e,value:""}}))})}return A}class ke{constructor(e){var t;if(this.file=Ne(e.url,e.path,e.filehandle),this.validateChecksums=!0,this.fetchReferenceSequenceCallback=e.seqFetch,this.options={checkSequenceMD5:e.checkSequenceMD5,cacheSize:null!==(t=e.cacheSize)&&void 0!==t?t:2e4},this.featureCache=new(b())({maxSize:this.options.cacheSize}),function(){const e=new Uint32Array([287454020]),t=new Uint8Array(e.buffer);return 68===t[0]?0:17===t[0]?1:2}()>0)throw new Error("Detected big-endian machine, may be unable to run")}read(e,t,A,r){return this.file.read(e,t,A,r)}stat(){return this.file.stat()}async getDefinition(){const{maxLength:e,parser:t}=ne(),A=v.hp.allocUnsafe(e);await this.file.read(A,0,e,0);const r=t(A).value;if(2!==r.majorVersion&&3!==r.majorVersion)throw new M(`CRAM version ${r.majorVersion} not supported`);return r}async getSamHeader(){const e=await this.getContainerById(0);if(!e)throw new U("file contains no containers");const t=await e.getFirstBlock();if(void 0===t)return Re("");const A=t.content,r=A.readInt32LE(0),n=A.toString("utf8",4,4+r);return this.header=n,Re(n)}async getHeaderText(){return await this.getSamHeader(),this.header}async getContainerById(e){const{majorVersion:t}=await this.getDefinition(),A=de(t);let r=A.cramFileDefinition.maxLength;const{size:n}=await this.file.stat(),{cramContainerHeader1:o}=A;let i;for(let t=0;t<=e;t++){if(r+o.maxLength+8>=n)return;i=this.getContainerAtPosition(r);const A=await i.getHeader();if(!A)throw new U(`container ${e} not found in file`);if(0===t){r=A._endPosition;for(let e=0;e=n)return;const o=v.hp.allocUnsafe(r.maxLength);return await this.file.read(o,0,r.maxLength,e),Ae(o,r.parser,0,e)}async _parseSection(e,t,A=e.maxLength,r){let n;if(r)n=r;else{const{size:e}=await this.file.stat();if(t+A>=e)return;n=v.hp.allocUnsafe(A),await this.file.read(n,0,A,t)}const o=Ae(n,e.parser,0,t);if(o._size!==A)throw new U(`section read error: requested size ${A} does not equal parsed size ${o._size}`);return o}async _uncompress(e,t,A){if("gzip"===e)J(t).copy(A);else if("bzip2"===e){const e=q().array(t);let r,n=q().header(e),o=0;do{r=q().decompress(e,n),-1!==r&&(v.hp.from(r).copy(A,o),o+=r.length,n-=r.length)}while(-1!==r)}else if("lzma"===e){const e=new Response(new F.XzReadableStream((r=t,new ReadableStream({start(e){e.enqueue(r),e.close()}}))));v.hp.from(await e.arrayBuffer()).copy(A)}else if("rans"===e)!function(e,t,A=0){if(0===e.length)return t.fill(0),t;const r=new z(e,A),n=r.get();if(0!==n&&1!==n)throw new U(`Invalid rANS order ${n}`);if(r.getInt()!==r.remaining()-4)throw new U("Incorrect input length.");const o=r.getInt(),i=new z(t||v.hp.allocUnsafe(o));if(i.length=128&&(t.fc[o].F&=-129,t.fc[o].F=(127&t.fc[o].F)<<8|255&e.get()),t.fc[o].C=n,P.symbolInit(A[o],t.fc[o].C,t.fc[o].F),t.R||(t.R=new Array(G)),t.R.fill(o,n,n+t.fc[o].F),n+=t.fc[o].F,0===r&&o+1===(255&e.getByteAt(e.position()))?(o=255&e.get(),r=255&e.get()):0!==r?(r-=1,o+=1):o=255&e.get()}while(0!==o);T(n=128&&(t[n].fc[a].F&=-129,t[n].fc[a].F=(127&t[n].fc[a].F)<<8|255&e.get()),t[n].fc[a].C=i,0===t[n].fc[a].F&&(t[n].fc[a].F=G),null==A[n][a]&&(A[n][a]=new P.RansDecSymbol),P.symbolInit(A[n][a],t[n].fc[a].C,t[n].fc[a].F),null==t[n].R&&(t[n].R=new Array(G)),t[n].R.fill(a,i,i+t[n].fc[a].F),i+=t[n].fc[a].F,T(i<=G),0===o&&a+1===(255&e.getByteAt(e.position()))?(a=255&e.get(),o=255&e.get()):0!==o?(o-=1,a+=1):a=255&e.get()}while(0!==a);0===r&&n+1===(255&e.getByteAt(e.position()))?(n=255&e.get(),r=255&e.get()):0!==r?(r-=1,n+=1):n=255&e.get()}while(0!==n)}(e,A,r),function(e,t,A,r){const n=t.remaining();let o=e.getInt(),i=e.getInt(),a=e.getInt(),s=e.getInt();const g=n>>2;let c=0,f=g,I=2*g,h=3*g,C=0,d=0,l=0,u=0;for(;c=3){const t=await this._parseSection(A.cramBlockCrc32,n+r.compressedSize);if(void 0===t)return;i.crc32=t.crc32,this.validateChecksums&&await this.checkCrc32(e,r._size+r.compressedSize,t.crc32,"block data"),i._endPosition=t._endPosition,i._size=i.compressedSize+A.cramBlockCrc32.maxLength}else i._endPosition=n+i.compressedSize,i._size=i.compressedSize;return i}}function qe(e,t){const[A,r,n,o,i,a]=t,s=A;e[s]||(e[s]=[]),e[s].push({start:r,span:n,containerStart:o,sliceStart:i,sliceBytes:a})}"getDefinition getSectionParsers getSamHeader".split(" ").forEach((e=>{re(ke,e)}));class Fe{constructor(e){this.filehandle=Ne(e.url,e.path,e.filehandle)}async parseIndex(){const e={},t=31===(A=await this.filehandle.readFile())[0]&&139===A[1]?J(A):A;var A;if(t.length>4&&21578050===t.readUInt32LE(0))throw new U("invalid .crai index file. note: file appears to be a .bai index. this is technically legal but please open a github issue if you need support");let r=[],n="";for(const A of t)if(A>=48&&A<=57||!n&&45===A)n+=String.fromCharCode(A);else if(9===A)r.push(Number.parseInt(n,10)),n="";else if(10===A)r.push(Number.parseInt(n,10)),n="",qe(e,r),r=[];else if(13!==A&&32!==A)throw new U("invalid .crai index file");return n&&r.push(Number.parseInt(n,10)),6===r.length&&qe(e,r),Object.entries(e).forEach((([t,A])=>{const r=A;e[t]=r.sort(((e,t)=>e.start-t.start||e.span-t.span))})),e}getIndex(){return this.parseIndexP||(this.parseIndexP=this.parseIndex().catch((e=>{throw this.parseIndexP=void 0,e}))),this.parseIndexP}async hasDataForReferenceSequence(e){return!!(await this.getIndex())[e]}async getEntriesForRange(e,t,A){const r=(await this.getIndex())[e];if(!r)return[];const n=e=>{const r=e.start,n=e.start+e.span;return r>A?-1:n<=t?1:0},o=[];for(const e of r)0===n(e)&&o.push(e);return o}}class Le{constructor(e){var t;if(this.cram=null!==(t=e.cram)&&void 0!==t?t:new ke({url:e.cramUrl,path:e.cramPath,filehandle:e.cramFilehandle,seqFetch:e.seqFetch,checkSequenceMD5:e.checkSequenceMD5,cacheSize:e.cacheSize}),!(this.cram instanceof ke))throw new Error("invalid arguments: no cramfile");this.index=e.index}async getRecordsForRange(e,t,A,r={}){if(r.viewAsPairs=r.viewAsPairs||!1,r.pairAcrossChr=r.pairAcrossChr||!1,r.maxInsertSize=r.maxInsertSize||2e5,"string"==typeof e)throw new M("string sequence names not yet supported");const n=e,o=await this.index.getEntriesForRange(n,t,A),i=r=>r.sequenceId===e&&r.alignmentStart<=A&&void 0!==r.lengthOnRef&&r.alignmentStart+r.lengthOnRef-1>=t,a=await Promise.all(o.map((e=>this.getRecordsInSlice(e,i))));let s=Array.prototype.concat(...a);if(r.viewAsPairs){const e={},t={};for(const A of s){const r=A.readName;if(void 0===r)throw new Error("readName undefined");const n=A.uniqueId;e[r]||(e[r]=0),e[r]+=1,t[n]=1}const A={};Object.entries(e).forEach((([e,t])=>{1===t&&(A[e]=!0)}));const o=[];for(const e of s){const t=e.readName;if(void 0===t)throw new Error("readName undefined");if(A[t]&&e.mate&&(e.mate.sequenceId===n||r.pairAcrossChr)&&Math.abs(e.alignmentStart-e.mate.alignmentStart)e.toString().localeCompare(t.toString()))).filter(((e,t,A)=>!t||e.toString()!==A[t-1].toString()));const g=[],c=[];for(const e of a){let r=this.cram.featureCache.get(e.toString());r||(r=this.getRecordsInSlice(e,(()=>!0)),this.cram.featureCache.set(e.toString(),r)),g.push(r);const n=r.then((e=>{const r=[];for(const n of e){if(void 0===n.readName)throw new Error("readName undefined");A[n.readName]&&!t[n.uniqueId]&&r.push(n)}return r}));c.push(n)}const f=await Promise.all(c);if(f.length){const e=f.reduce(((e,t)=>e.concat(t)));s=s.concat(e)}}return s}getRecordsInSlice({containerStart:e,sliceStart:t,sliceBytes:A},r){return this.cram.getContainerAtPosition(e).getSlice(t,A).getRecords(r)}hasDataForReferenceSequence(e){return this.index.hasDataForReferenceSequence(e)}}},85911:(e,t,A)=>{const r=A(88946),n=A(76526),o=A(38298),i=A(22823),a=128;e.exports=class{decode(e){return this.stream=new n(e),this.decodeStream(this.stream)}decodeStream(e,t=0){var A=this.stream.ReadByte();16&A||(t=this.stream.ReadUint7());var r,n=t,o=1&A;if(8&A)return this.decodeStripe(this.stream,t);if(A&a&&([r,n]=this.decodePackMeta(this.stream)),32&A)var i=this.decodeCat(this.stream,n);else i=4&A?this.decodeExt(this.stream,n):64&A?o?this.decodeRLE1(this.stream,n):this.decodeRLE0(this.stream,n):o?this.decode1(this.stream,n):this.decode0(this.stream,n);return A&a&&(i=this.decodePack(i,r,t)),i}encode(e,t){if(this.stream=new n("",0,1.1*e.length+100),this.stream.WriteByte(t),16&t||this.stream.WriteUint7(e.length),8&t)return Buffer.concat([this.stream.buf.slice(0,this.stream.pos),this.encodeStripe(this.stream,e,t>>8)]);var A,r=1&t,o=e.length;return t&a&&([A,e,o]=this.encodePack(e)),t&a&&this.stream.WriteStream(A),64&t?r?this.encodeRLE1(e,o,this.stream):this.encodeRLE0(e,o,this.stream):r?this.encode1(e,o,this.stream):this.encode0(e,o,this.stream)}decode0(e,t){var A=new Buffer.allocUnsafe(t),n=e.ReadByte();0==n&&(n=256);var i=new o(n),a=new r(e);a.RangeStartDecode(e);for(var s=0;s=3?3:c;for(s[f].ModelEncode(A,g,I),c-=I,f=256;3==I;)I=c>=3?3:c,s[f].ModelEncode(A,g,I),f=257,c-=I}return g.RangeFinishEncode(A),A.buf.slice(0,A.pos)}decodeRLE1(e,t){var A=new Buffer.allocUnsafe(t),n=e.ReadByte();0==n&&(n=256);for(var i=new Array(n),a=0;a=3?3:f;for(s[I].ModelEncode(A,g,h),f-=h,I=256;3==h;)h=f>=3?3:f,s[I].ModelEncode(A,g,h),I=257,f-=h}return g.RangeFinishEncode(A),A.buf.slice(0,A.pos)}decodePackMeta(e){this.nsym=e.ReadByte();for(var t=new Array(this.nsym),A=0;A>=1}}else if(this.nsym<=4)for(n=0,o=0;n>=2;else{if(!(this.nsym<=16))return e;for(n=0,o=0;n>=4}return r}packMeta(e){for(var t=new n("",0,1024),A=new Array(256),r=0;ri),r[i]=new Array(o[i]);for(var a=0,s=0;so),i[o]=this.decodeStream(e,n[o]);var a=new Buffer.allocUnsafe(t);for(o=0;o{e.exports=class{constructor(e){this.low=0,this.range=4294967295,this.code=0,this.FFnum=0,this.carry=0,this.cache=0}RangeStartDecode(e){for(var t=0;t<5;t++)this.code=(this.code<<8)+e.ReadByte();this.code&=4294967295,this.code>>>=0}RangeGetFrequency(e){return this.range=Math.floor(this.range/e),Math.floor(this.code/this.range)}RangeDecode(e,t,A,r){for(this.code-=t*this.range,this.range*=A;this.range<1<<24;)this.range*=256,this.code=256*this.code+e.ReadByte()}RangeShiftLow(e){if(this.low<4278190080|this.carry){for(e.WriteByte(this.cache+this.carry);this.FFnum;)e.WriteByte(this.carry-1),this.FFnum--;this.cache=this.low>>>24,this.carry=0}else this.FFnum++;this.low<<=8,this.low>>>=0}RangeEncode(e,t,A,r){var n=this.low;for(this.range=Math.floor(this.range/r),this.low+=t*this.range,this.low>>>=0,this.range*=A,this.low{e.exports=class{constructor(e=256){this.total_freq=e,this.max_sym=e-1,this.S=new Array,this.F=new Array;for(var t=0;t<=this.max_sym;t++)this.S[t]=t,this.F[t]=1}ModelDecode(e,t){for(var A=t.RangeGetFrequency(this.total_freq),r=0,n=0;r+this.F[n]<=A;)r+=this.F[n++];t.RangeDecode(e,r,this.F[n],this.total_freq),this.F[n]+=16,this.total_freq+=16,this.total_freq>65519&&this.ModelRenormalise();var o=this.S[n];if(n>0&&this.F[n]>this.F[n-1]){var i=this.F[n];this.F[n]=this.F[n-1],this.F[n-1]=i,i=this.S[n],this.S[n]=this.S[n-1],this.S[n-1]=i}return o}ModelRenormalise(){this.total_freq=0;for(var e=0;e<=this.max_sym;e++)this.F[e]-=Math.floor(this.F[e]/2),this.total_freq+=this.F[e]}ModelEncode(e,t,A){for(var r=0,n=0;this.S[n]!=A;n++)r+=this.F[n];if(t.RangeEncode(e,r,this.F[n],this.total_freq),this.F[n]+=16,this.total_freq+=16,this.total_freq>65519&&this.ModelRenormalise(),A=this.S[n],n>0&&this.F[n]>this.F[n-1]){var o=this.F[n];this.F[n]=this.F[n-1],this.F[n-1]=o,o=this.S[n],this.S[n]=this.S[n-1],this.S[n-1]=o}}}},50786:(e,t,A)=>{const r=A(76526),n=A(38298),o=A(88946);function i(e,t,A){for(var r=0,n=0,o=-1,i=new Array(1024);n>4,t.qshift=15&A,A=e.ReadByte(),t.qloc=A>>4,t.sloc=15&A,A=e.ReadByte(),t.ploc=A>>4,t.dloc=15&A,t.qmap=new Array(256),16&t.pflags)for(var r=0;r0&&128&t.pflags)i(e,t.qtab,256);else for(r=0;r<256;r++)t.qtab[r]=r;return t.ptab=new Array(1024),32&t.pflags&&i(e,t.ptab,1024),t.dtab=new Array(256),64&t.pflags&&i(e,t.dtab,256),t}function g(e,t,A,r,n,o){A.max_sel>0?n.s=r.sel.ModelDecode(e,t):n.s=0,n.x=A.stab[n.s];var i=A.params[n.x];if(i.fixed_len>=0){var a=r.len[0].ModelDecode(e,t);a|=r.len[1].ModelDecode(e,t)<<8,a|=r.len[2].ModelDecode(e,t)<<16,a|=r.len[3].ModelDecode(e,t)<<24,i.fixed_len>0&&(i.fixed_len=-a)}else a=-i.fixed_len;n.len=a,A.do_rev&&(o[n.rec]=r.rev.ModelDecode(e,t)),n.is_dup=0,2&i.pflags&&r.dup.ModelDecode(e,t)&&(n.is_dup=1),n.p=a,n.delta=0,n.qctx=0,n.prevq=0,n.rec++}function c(e,t,A){for(var r=0,n=0,o=new Array(2*A),i=0;r1?A.nparam-1:0,o=new Array(256);if(2&A)n=e.ReadByte(),i(e,o,256);else{for(var a=0;a0&&(t.sel=new n(e.max_sel+1)),t}(r),h=new o(e);h.RangeStartDecode(e);for(var C=new Buffer.allocUnsafe(A),d={qctx:0,prevq:0,delta:0,p:0,s:0,x:0,len:0,is_dup:0,rec:0},l=0;l0&&I.dup.ModelDecode(e,h)){for(var u=0;u4),qshift:f,qloc:7,pbits:7,pshift:t[0]>128?1:0,ploc:0,dbits:f>4?0:1,dshift:3,dloc:15,sbits:0,sloc:15,do_stab:0,context:0,max_sym:s,nsym:a,do_qmap:I,do_dedup:0,fixed_len:1==t.length?1:0,do_sel:0,do_rev:0,do_pos:1,do_delta:f<=4?1:0,do_qtab:0,qbits:8+(f>4)-(0==i),sbits:1,sloc:15-(f<=4),do_stab:1,do_sel:1}]}(e,t,A,i),C=function(e,t,A,r,n,o,i){for(var a=[0,1,1,1,2,2,2,2,2,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,5,5,5,5,5,5,5,5,5,5,5,6,6,6,6,6,6,6,6,6,6,6,6,6,7,7,7,7,7,7,7,7,7,7,7,7,7,7,7],s=0;s1?1:0)|(t[0].do_stab?2:0);if(e.WriteByte(g),1&g&&e.WriteByte(t.length),2&g){var f=1<0&&f--,e.WriteByte(f),c(e,i,256)}for(var I=0;I0){for(s=0;s<256;s++)r[I][s]=s;t[I].do_qtab&&c(e,r[I],256)}if(t[I].pbits>0){for(s=0;s<1024;s++)n[I][s]=Math.min((1<>t[I].pshift);c(e,n[I],1024)}if(t[I].dbits>0){for(s=0;s<256;s++)a[s]>(1<>t[I].dshift)];c(e,o[I],256)}}return e}(C,h,i,a,s,g,f);return function(e,t,A,r,i,a,s,g,c,f){var I=1<0&&I--;for(var h=t.length,C=0,d=0;d0&&Q.ModelEncode(e,E,m);var y=f[m],p=A[Math.min(A.length-1,w++)];i[y].fixed_len?i[y].fixed_len>0&&(B[0].ModelEncode(e,E,255&p),B[1].ModelEncode(e,E,p>>8&255),B[2].ModelEncode(e,E,p>>16&255),B[3].ModelEncode(e,E,p>>24&255),i[y].fixed_len=-1):(B[0].ModelEncode(e,E,255&p),B[1].ModelEncode(e,E,p>>8&255),B[2].ModelEncode(e,E,p>>16&255),B[3].ModelEncode(e,E,p>>24&255)),i[y].do_dedup&&process.exit(1),d=p;var v=0,D=i[y].context,S=0,b=0}var N=t[u++],R=a[y][N];l[D].ModelEncode(e,E,R),S=(S<0&&(D+=g[y][Math.min(d,1023)]<0&&(D+=c[y][Math.min(v,255)]<{"use strict";var r=A(5960),n=A(57379),o=A(85911),i=A(50786),a=A(57561);e.exports={r4x8_uncompress:function(e,t){r.decode(e).copy(t,0,0)},r4x16_uncompress:function(e,t){n.decode(e).copy(t,0,0)},arith_uncompress:function(e,t){o.decode(e).copy(t,0,0)},fqzcomp_uncompress:function(e,t){var A=new Array;i.decode(e,A).copy(t,0,0)},tok3_uncompress:function(e,t){var A=a.decode(e,0,"\0");Buffer.from(A,"binary").copy(t,0,0)}}},76526:e=>{e.exports=class{constructor(e,t=0,A=0){0!=A?(this.buf=Buffer.allocUnsafe(A),this.length=A):(this.buf=e,this.length=e.length),this.pos=t}EOF(){return this.pos>=this.length}ReadData(e){var t=this.buf.slice(this.pos,this.pos+e);return this.pos+=e,t}ReadByte(){const e=this.buf[this.pos];return this.pos++,e}ReadChar(){const e=this.buf[this.pos];return this.pos++,String.fromCharCode(e)}ReadUint16(){return this.ReadByte()|this.ReadByte()<<8}ReadUint32(){const e=this.buf.readInt32LE(this.pos);return this.pos+=4,e}ReadString(){var e="";do{var t=this.buf[this.pos++];t&&(e+=String.fromCharCode(t))}while(t);return e}ReadUint7(){var e=0;do{var t=this.ReadByte();e=e<<7|127&t}while(128&t);return e}ReadITF8(){var e=this.buf[this.pos];return 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License: MIT - https://github.com/wingo/walloc - */ - -/*! - * Determine if an object is a Buffer - * - * @author Feross Aboukhadijeh - * @license MIT - */ diff -r 49f3d3878413 -r fd0fc6fdc7c5 x/static/js/5099.14f82444.chunk.js.map --- a/x/static/js/5099.14f82444.chunk.js.map Sat Oct 05 23:58:05 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ 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Constants = {\n CRAM_FLAG_PRESERVE_QUAL_SCORES: 1 << 0,\n CRAM_FLAG_DETACHED: 1 << 1,\n CRAM_FLAG_MATE_DOWNSTREAM: 1 << 2,\n CRAM_FLAG_NO_SEQ: 1 << 3,\n CRAM_FLAG_MASK: (1 << 4) - 1,\n\n // mate read is reversed\n CRAM_M_REVERSE: 1,\n // mated read is unmapped\n CRAM_M_UNMAP: 2,\n\n // the read is paired in sequencing, no matter whether it is mapped in a pair\n BAM_FPAIRED: 1,\n // the read is mapped in a proper pair\n BAM_FPROPER_PAIR: 2,\n // the read itself is unmapped; conflictive with BAM_FPROPER_PAIR\n BAM_FUNMAP: 4,\n // the mate is unmapped\n BAM_FMUNMAP: 8,\n // the read is mapped to the reverse strand\n BAM_FREVERSE: 16,\n // the mate is mapped to the reverse strand\n BAM_FMREVERSE: 32,\n // this is read1\n BAM_FREAD1: 64,\n // this is read2\n BAM_FREAD2: 128,\n // not primary alignment\n BAM_FSECONDARY: 256,\n // QC failure\n BAM_FQCFAIL: 512,\n // optical or PCR duplicate\n BAM_FDUP: 1024,\n // supplementary alignment\n BAM_FSUPPLEMENTARY: 2048,\n\n BAM_CMATCH: 0,\n BAM_CINS: 1,\n BAM_CDEL: 2,\n BAM_CREF_SKIP: 3,\n BAM_CSOFT_CLIP: 4,\n BAM_CHARD_CLIP: 5,\n BAM_CPAD: 6,\n BAM_CEQUAL: 7,\n BAM_CDIFF: 8,\n BAM_CBACK: 9,\n\n BAM_CIGAR_STR: 'MIDNSHP:XB',\n BAM_CIGAR_SHIFT: 4,\n BAM_CIGAR_MASK: 0xf,\n BAM_CIGAR_TYPE: 0x3c1a7,\n}\n\nexport default Constants\n","import Constants from './constants'\nimport CramContainerCompressionScheme from './container/compressionScheme'\nimport type decodeRecord from './slice/decodeRecord'\n\nexport interface RefRegion {\n start: number\n end: number\n seq: string\n}\n\nexport interface ReadFeature {\n code: string\n pos: number\n refPos: number\n data: any\n\n ref?: string\n sub?: string\n}\n\nfunction decodeReadSequence(cramRecord: CramRecord, refRegion: RefRegion) {\n // if it has no length, it has no sequence\n if (!cramRecord.lengthOnRef && !cramRecord.readLength) {\n return null\n }\n\n if (cramRecord.isUnknownBases()) {\n return null\n }\n\n // remember: all coordinates are 1-based closed\n const regionSeqOffset = cramRecord.alignmentStart - refRegion.start\n\n if (!cramRecord.readFeatures) {\n return refRegion.seq\n .slice(regionSeqOffset, regionSeqOffset + (cramRecord.lengthOnRef || 0))\n .toUpperCase()\n }\n\n let bases = ''\n let regionPos = regionSeqOffset\n let currentReadFeature = 0\n while (bases.length < cramRecord.readLength) {\n if (currentReadFeature < cramRecord.readFeatures.length) {\n const feature = cramRecord.readFeatures[currentReadFeature]!\n if (feature.code === 'Q' || feature.code === 'q') {\n currentReadFeature += 1\n } else if (feature.pos === bases.length + 1) {\n // process the read feature\n currentReadFeature += 1\n\n if (feature.code === 'b') {\n // specify a base pair for some reason\n const added = feature.data\n bases += added\n regionPos += added.length\n } else if (feature.code === 'B') {\n // base pair and associated quality\n // TODO: do we need to set the quality in the qual scores?\n bases += feature.data[0]\n regionPos += 1\n } else if (feature.code === 'X') {\n // base substitution\n bases += feature.sub\n regionPos += 1\n } else if (feature.code === 'I') {\n // insertion\n bases += feature.data\n } else if (feature.code === 'D') {\n // deletion\n regionPos += feature.data\n } else if (feature.code === 'i') {\n // insert single base\n bases += feature.data\n } else if (feature.code === 'N') {\n // reference skip. delete some bases\n // do nothing\n // seqBases.splice(feature.pos - 1, feature.data)\n regionPos += feature.data\n } else if (feature.code === 'S') {\n // soft clipped bases that should be present in the read seq\n // seqBases.splice(feature.pos - 1, 0, ...feature.data.split(''))\n bases += feature.data\n } else if (feature.code === 'P') {\n // padding, do nothing\n } else if (feature.code === 'H') {\n // hard clip, do nothing\n }\n } else if (currentReadFeature < cramRecord.readFeatures.length) {\n // put down a chunk of sequence up to the next read feature\n const chunk = refRegion.seq.slice(\n regionPos,\n regionPos + feature.pos - bases.length - 1,\n )\n bases += chunk\n regionPos += chunk.length\n }\n } else {\n // put down a chunk of reference up to the full read length\n const chunk = refRegion.seq.slice(\n regionPos,\n regionPos + cramRecord.readLength - bases.length,\n )\n bases += chunk\n regionPos += chunk.length\n }\n }\n\n return bases.toUpperCase()\n}\n\nconst baseNumbers = {\n a: 0,\n A: 0,\n c: 1,\n C: 1,\n g: 2,\n G: 2,\n t: 3,\n T: 3,\n n: 4,\n N: 4,\n}\n\nfunction decodeBaseSubstitution(\n cramRecord: CramRecord,\n refRegion: RefRegion,\n compressionScheme: CramContainerCompressionScheme,\n readFeature: ReadFeature,\n) {\n // decode base substitution code using the substitution matrix\n const refCoord = readFeature.refPos - refRegion.start\n const refBase = refRegion.seq.charAt(refCoord)\n if (refBase) {\n readFeature.ref = refBase\n }\n let baseNumber = (baseNumbers as any)[refBase]\n if (baseNumber === undefined) {\n baseNumber = 4\n }\n const substitutionScheme = compressionScheme.substitutionMatrix[baseNumber]!\n const base = substitutionScheme[readFeature.data]\n if (base) {\n readFeature.sub = base\n }\n}\n\nexport interface MateRecord {\n readName?: string\n sequenceId: number\n alignmentStart: number\n flags?: number\n\n uniqueId?: number\n}\n\nexport const BamFlags = [\n [0x1, 'Paired'],\n [0x2, 'ProperlyPaired'],\n [0x4, 'SegmentUnmapped'],\n [0x8, 'MateUnmapped'],\n [0x10, 'ReverseComplemented'],\n // the mate is mapped to the reverse strand\n [0x20, 'MateReverseComplemented'],\n // this is read1\n [0x40, 'Read1'],\n // this is read2\n [0x80, 'Read2'],\n // not primary alignment\n [0x100, 'Secondary'],\n // QC failure\n [0x200, 'FailedQc'],\n // optical or PCR duplicate\n [0x400, 'Duplicate'],\n // supplementary alignment\n [0x800, 'Supplementary'],\n] as const\n\nexport const CramFlags = [\n [0x1, 'PreservingQualityScores'],\n [0x2, 'Detached'],\n [0x4, 'WithMateDownstream'],\n [0x8, 'DecodeSequenceAsStar'],\n] as const\n\nexport const MateFlags = [\n [0x1, 'OnNegativeStrand'],\n [0x2, 'Unmapped'],\n] as const\n\ntype FlagsDecoder = {\n [Property in Type as `is${Capitalize}`]: (\n flags: number,\n ) => boolean\n}\n\ntype FlagsEncoder = {\n [Property in Type as `set${Capitalize}`]: (\n flags: number,\n ) => number\n}\n\nfunction makeFlagsHelper(\n x: readonly (readonly [number, T])[],\n): FlagsDecoder & FlagsEncoder {\n const r: any = {}\n for (const [code, name] of x) {\n r[`is${name}`] = (flags: number) => !!(flags & code)\n r[`set${name}`] = (flags: number) => flags | code\n }\n\n return r\n}\n\nexport const BamFlagsDecoder = makeFlagsHelper(BamFlags)\nexport const CramFlagsDecoder = makeFlagsHelper(CramFlags)\nexport const MateFlagsDecoder = makeFlagsHelper(MateFlags)\n\n/**\n * Class of each CRAM record returned by this API.\n */\nexport default class CramRecord {\n public tags: Record\n public flags: number\n public cramFlags: number\n public readBases?: string | null\n public _refRegion?: RefRegion\n public readFeatures?: ReadFeature[]\n public alignmentStart: number\n public lengthOnRef: number | undefined\n public readLength: number\n public templateLength?: number\n public templateSize?: number\n public readName?: string\n public mateRecordNumber?: number\n public mate?: MateRecord\n public uniqueId: number\n public sequenceId: number\n public readGroupId: number\n public mappingQuality: number | undefined\n public qualityScores: number[] | null | undefined\n\n constructor({\n flags,\n cramFlags,\n readLength,\n mappingQuality,\n lengthOnRef,\n qualityScores,\n mateRecordNumber,\n readBases,\n readFeatures,\n mateToUse,\n readGroupId,\n readName,\n sequenceId,\n uniqueId,\n templateSize,\n alignmentStart,\n tags,\n }: ReturnType & { uniqueId: number }) {\n this.flags = flags\n this.cramFlags = cramFlags\n this.readLength = readLength\n this.mappingQuality = mappingQuality\n this.lengthOnRef = lengthOnRef\n this.qualityScores = qualityScores\n if (readBases) {\n this.readBases = readBases\n }\n\n this.readGroupId = readGroupId\n this.readName = readName\n this.sequenceId = sequenceId\n this.uniqueId = uniqueId\n this.templateSize = templateSize\n this.alignmentStart = alignmentStart\n this.tags = tags\n\n // backwards compatibility\n if (readFeatures) {\n this.readFeatures = readFeatures\n }\n if (mateToUse) {\n this.mate = {\n flags: mateToUse.mateFlags,\n readName: mateToUse.mateReadName,\n sequenceId: mateToUse.mateSequenceId,\n alignmentStart: mateToUse.mateAlignmentStart,\n }\n }\n if (mateRecordNumber) {\n this.mateRecordNumber = mateRecordNumber\n }\n }\n\n /**\n * @returns {boolean} true if the read is paired, regardless of whether both segments are mapped\n */\n isPaired() {\n return !!(this.flags & Constants.BAM_FPAIRED)\n }\n\n /** @returns {boolean} true if the read is paired, and both segments are mapped */\n isProperlyPaired() {\n return !!(this.flags & Constants.BAM_FPROPER_PAIR)\n }\n\n /** @returns {boolean} true if the read itself is unmapped; conflictive with isProperlyPaired */\n isSegmentUnmapped() {\n return !!(this.flags & Constants.BAM_FUNMAP)\n }\n\n /** @returns {boolean} true if the read itself is unmapped; conflictive with isProperlyPaired */\n isMateUnmapped() {\n return !!(this.flags & Constants.BAM_FMUNMAP)\n }\n\n /** @returns {boolean} true if the read is mapped to the reverse strand */\n isReverseComplemented() {\n return !!(this.flags & Constants.BAM_FREVERSE)\n }\n\n /** @returns {boolean} true if the mate is mapped to the reverse strand */\n isMateReverseComplemented() {\n return !!(this.flags & Constants.BAM_FMREVERSE)\n }\n\n /** @returns {boolean} true if this is read number 1 in a pair */\n isRead1() {\n return !!(this.flags & Constants.BAM_FREAD1)\n }\n\n /** @returns {boolean} true if this is read number 2 in a pair */\n isRead2() {\n return !!(this.flags & Constants.BAM_FREAD2)\n }\n\n /** @returns {boolean} true if this is a secondary alignment */\n isSecondary() {\n return !!(this.flags & Constants.BAM_FSECONDARY)\n }\n\n /** @returns {boolean} true if this read has failed QC checks */\n isFailedQc() {\n return !!(this.flags & Constants.BAM_FQCFAIL)\n }\n\n /** @returns {boolean} true if the read is an optical or PCR duplicate */\n isDuplicate() {\n return !!(this.flags & Constants.BAM_FDUP)\n }\n\n /** @returns {boolean} true if this is a supplementary alignment */\n isSupplementary() {\n return !!(this.flags & Constants.BAM_FSUPPLEMENTARY)\n }\n\n /**\n * @returns {boolean} true if the read is detached\n */\n isDetached() {\n return !!(this.cramFlags & Constants.CRAM_FLAG_DETACHED)\n }\n\n /** @returns {boolean} true if the read has a mate in this same CRAM segment */\n hasMateDownStream() {\n return !!(this.cramFlags & Constants.CRAM_FLAG_MATE_DOWNSTREAM)\n }\n\n /** @returns {boolean} true if the read contains qual scores */\n isPreservingQualityScores() {\n return !!(this.cramFlags & Constants.CRAM_FLAG_PRESERVE_QUAL_SCORES)\n }\n\n /** @returns {boolean} true if the read has no sequence bases */\n isUnknownBases() {\n return !!(this.cramFlags & Constants.CRAM_FLAG_NO_SEQ)\n }\n\n /**\n * Get the original sequence of this read.\n * @returns {String} sequence basepairs\n */\n getReadBases() {\n if (!this.readBases && this._refRegion) {\n const decoded = decodeReadSequence(this, this._refRegion)\n if (decoded) {\n this.readBases = decoded\n }\n }\n return this.readBases\n }\n\n /**\n * Get the pair orientation of a paired read. Adapted from igv.js\n * @returns {String} of paired orientatin\n */\n getPairOrientation() {\n if (\n !this.isSegmentUnmapped() &&\n this.isPaired() &&\n !this.isMateUnmapped() &&\n this.mate &&\n this.sequenceId === this.mate.sequenceId\n ) {\n const s1 = this.isReverseComplemented() ? 'R' : 'F'\n const s2 = this.isMateReverseComplemented() ? 'R' : 'F'\n let o1 = ' '\n let o2 = ' '\n if (this.isRead1()) {\n o1 = '1'\n o2 = '2'\n } else if (this.isRead2()) {\n o1 = '2'\n o2 = '1'\n }\n\n const tmp = []\n let isize = this.templateLength || this.templateSize\n if (isize === undefined) {\n throw new Error('One of templateSize and templateLength must be set')\n }\n if (this.alignmentStart > this.mate.alignmentStart && isize > 0) {\n isize = -isize\n }\n if (isize > 0) {\n tmp[0] = s1\n tmp[1] = o1\n tmp[2] = s2\n tmp[3] = o2\n } else {\n tmp[2] = s1\n tmp[3] = o1\n tmp[0] = s2\n tmp[1] = o2\n }\n return tmp.join('')\n }\n return null\n }\n\n /**\n * Annotates this feature with the given reference sequence basepair\n * information. This will add a `sub` and a `ref` item to base\n * substitution read features given the actual substituted and reference\n * base pairs, and will make the `getReadSequence()` method work.\n *\n * @param {object} refRegion\n * @param {number} refRegion.start\n * @param {number} refRegion.end\n * @param {string} refRegion.seq\n * @param {CramContainerCompressionScheme} compressionScheme\n * @returns {undefined} nothing\n */\n addReferenceSequence(\n refRegion: RefRegion,\n compressionScheme: CramContainerCompressionScheme,\n ) {\n if (this.readFeatures) {\n // use the reference bases to decode the bases\n // substituted in each base substitution\n this.readFeatures.forEach(readFeature => {\n if (readFeature.code === 'X') {\n decodeBaseSubstitution(\n this,\n refRegion,\n compressionScheme,\n readFeature,\n )\n }\n })\n }\n\n // if this region completely covers this read,\n // keep a reference to it\n if (\n !this.readBases &&\n refRegion.start <= this.alignmentStart &&\n refRegion.end >=\n this.alignmentStart + (this.lengthOnRef || this.readLength) - 1\n ) {\n this._refRegion = refRegion\n }\n }\n\n toJSON() {\n const data: any = {}\n Object.keys(this).forEach(k => {\n if (k.startsWith('_')) {\n return\n }\n data[k] = (this as any)[k]\n })\n\n data.readBases = this.getReadBases()\n\n return data\n }\n}\n","export class CramError extends Error {}\n\n/** Error caused by encountering a part of the CRAM spec that has not yet been implemented */\nexport class CramUnimplementedError extends Error {}\n\n/** An error caused by malformed data. */\nexport class CramMalformedError extends CramError {}\n\n/**\n * An error caused by data being too big, exceeding a size limit.\n */\nexport class CramSizeLimitError extends CramError {}\n\n/**\n * An invalid argument was supplied to a cram-js method or object.\n */\nexport class CramArgumentError extends CramError {}\n","import { inflate } from 'pako'\nimport { Buffer } from 'buffer'\n\nexport function unzip(input: Buffer) {\n return Buffer.from(inflate(input))\n}\n","const TF_SHIFT = 12\nconst TOTFREQ = 1 << TF_SHIFT\nconst RANS_BYTE_L = 1 << 23\n\nexport { TF_SHIFT, TOTFREQ, RANS_BYTE_L }\n","// @ts-nocheck\nimport { CramMalformedError } from '../errors'\n\nimport { RANS_BYTE_L } from './constants'\n\nclass FC {\n // int F, C;\n constructor() {\n this.F = undefined\n this.C = undefined\n }\n}\n\nclass AriDecoder {\n // final FC[] fc = new FC[256];\n // byte[] R;\n\n constructor() {\n this.fc = new Array(256)\n for (let i = 0; i < this.fc.length; i += 1) {\n this.fc[i] = new FC()\n }\n this.R = null\n }\n}\n\nclass DecodingSymbol {\n // int start; // Start of range.\n // int freq; // Symbol frequency.\n constructor() {\n this.start = undefined\n this.freq = undefined\n }\n}\n\n// Initialize a decoder symbol to start \"start\" and frequency \"freq\"\nfunction symbolInit(sym, start, freq) {\n if (!(start <= 1 << 16)) {\n throw new CramMalformedError('assertion failed: start <= 1<<16')\n }\n if (!(freq <= (1 << 16) - start)) {\n throw new CramMalformedError('assertion failed: freq <= 1<<16')\n }\n sym.start = start\n sym.freq = freq\n}\n\n// Advances in the bit stream by \"popping\" a single symbol with range start\n// \"start\" and frequency \"freq\". All frequencies are assumed to sum to\n// \"1 << scaleBits\".\n// No renormalization or output happens.\n/* private static int */ function advanceStep(\n /* final int */ r,\n /* final int */ start,\n /* final int */ freq,\n /* final int */ scaleBits,\n) {\n /* final int */ const mask = (1 << scaleBits) - 1\n\n // s, x = D(x)\n return freq * (r >> scaleBits) + (r & mask) - start\n}\n\n// Equivalent to RansDecAdvanceStep that takes a symbol.\n/* static int */ function advanceSymbolStep(\n /* final int */ r,\n /* final RansDecSymbol */ sym,\n /* final int */ scaleBits,\n) {\n return advanceStep(r, sym.start, sym.freq, scaleBits)\n}\n\n// Returns the current cumulative frequency (map it to a symbol yourself!)\n/* static int */ function get(/* final int */ r, /* final int */ scaleBits) {\n return r & ((1 << scaleBits) - 1)\n}\n\n// Advances in the bit stream by \"popping\" a single symbol with range start\n// \"start\" and frequency \"freq\". All frequencies are assumed to sum to\n// \"1 << scaleBits\",\n// and the resulting bytes get written to ptr (which is updated).\n/* private static int */ function advance(\n /* int */ r,\n /* final ByteBuffer */ pptr,\n /* final int */ start,\n /* final int */ freq,\n /* final int */ scaleBits,\n) {\n /* final int */ const mask = (1 << scaleBits) - 1\n\n // s, x = D(x)\n r = freq * (r >> scaleBits) + (r & mask) - start\n\n // re-normalize\n if (r < RANS_BYTE_L) {\n do {\n /* final int */ const b = 0xff & pptr.get()\n r = (r << 8) | b\n } while (r < RANS_BYTE_L)\n }\n\n return r\n}\n\n// Equivalent to RansDecAdvance that takes a symbol.\n/* static int */ function advanceSymbol(\n /* final int */ r,\n /* final ByteBuffer */ pptr,\n /* final RansDecSymbol */ sym,\n /* final int */ scaleBits,\n) {\n return advance(r, pptr, sym.start, sym.freq, scaleBits)\n}\n\n// Re-normalize.\n/* static int */ function renormalize(\n /* int */ r,\n /* final ByteBuffer */ pptr,\n) {\n // re-normalize\n if (r < RANS_BYTE_L) {\n do {\n r = (r << 8) | (0xff & pptr.get())\n } while (r < RANS_BYTE_L)\n }\n\n return r\n}\n\nexport default {\n FC,\n AriDecoder,\n DecodingSymbol,\n symbolInit,\n advanceStep,\n advanceSymbolStep,\n get,\n advanceSymbol,\n renormalize,\n}\n","// @ts-nocheck\nimport { CramMalformedError } from '../errors'\n\nimport { TOTFREQ } from './constants'\nimport Decoding from './decoding'\n\nfunction assert(result) {\n if (!result) {\n throw new CramMalformedError('assertion failed')\n }\n}\n\nexport function readStatsO0(\n /* ByteBuffer */ cp,\n /* Decoding.AriDecoder */ decoder,\n /* Decoding.RansDecSymbol[] */ syms,\n) {\n // Pre-compute reverse lookup of frequency.\n let rle = 0\n let x = 0\n let j = cp.get() & 0xff\n do {\n if (decoder.fc[j] == null) {\n decoder.fc[j] = new Decoding.FC()\n }\n decoder.fc[j].F = cp.get() & 0xff\n if (decoder.fc[j].F >= 128) {\n decoder.fc[j].F &= ~128\n decoder.fc[j].F = ((decoder.fc[j].F & 127) << 8) | (cp.get() & 0xff)\n }\n decoder.fc[j].C = x\n\n Decoding.symbolInit(syms[j], decoder.fc[j].C, decoder.fc[j].F)\n\n /* Build reverse lookup table */\n if (!decoder.R) {\n decoder.R = new Array(TOTFREQ)\n }\n decoder.R.fill(j, x, x + decoder.fc[j].F)\n\n x += decoder.fc[j].F\n\n if (rle === 0 && j + 1 === (0xff & cp.getByteAt(cp.position()))) {\n j = cp.get() & 0xff\n rle = cp.get() & 0xff\n } else if (rle !== 0) {\n rle -= 1\n j += 1\n } else {\n j = cp.get() & 0xff\n }\n } while (j !== 0)\n\n assert(x < TOTFREQ)\n}\n\nexport function readStatsO1(\n /* ByteBuffer */ cp,\n /* Decoding.AriDecoder[] */ D,\n /* Decoding.RansDecSymbol[][] */ syms,\n) {\n let rlei = 0\n let i = 0xff & cp.get()\n do {\n let rlej = 0\n let x = 0\n let j = 0xff & cp.get()\n if (D[i] == null) {\n D[i] = new Decoding.AriDecoder()\n }\n do {\n if (D[i].fc[j] == null) {\n D[i].fc[j] = new Decoding.FC()\n }\n D[i].fc[j].F = 0xff & cp.get()\n if (D[i].fc[j].F >= 128) {\n D[i].fc[j].F &= ~128\n D[i].fc[j].F = ((D[i].fc[j].F & 127) << 8) | (0xff & cp.get())\n }\n D[i].fc[j].C = x\n\n if (D[i].fc[j].F === 0) {\n D[i].fc[j].F = TOTFREQ\n }\n\n if (syms[i][j] == null) {\n syms[i][j] = new Decoding.RansDecSymbol()\n }\n\n Decoding.symbolInit(syms[i][j], D[i].fc[j].C, D[i].fc[j].F)\n\n /* Build reverse lookup table */\n if (D[i].R == null) {\n D[i].R = new Array(TOTFREQ)\n }\n D[i].R.fill(j, x, x + D[i].fc[j].F)\n\n x += D[i].fc[j].F\n assert(x <= TOTFREQ)\n\n if (rlej === 0 && j + 1 === (0xff & cp.getByteAt(cp.position()))) {\n j = 0xff & cp.get()\n rlej = 0xff & cp.get()\n } else if (rlej !== 0) {\n rlej -= 1\n j += 1\n } else {\n j = 0xff & cp.get()\n }\n } while (j !== 0)\n\n if (rlei === 0 && i + 1 === (0xff & cp.getByteAt(cp.position()))) {\n i = 0xff & cp.get()\n rlei = 0xff & cp.get()\n } else if (rlei !== 0) {\n rlei -= 1\n i += 1\n } else {\n i = 0xff & cp.get()\n }\n } while (i !== 0)\n}\n","// @ts-nocheck\nimport { Buffer } from 'buffer'\nimport { CramMalformedError } from '../errors'\n\nimport Decoding from './decoding'\nimport { readStatsO0, readStatsO1 } from './frequencies'\n\nimport D04 from './d04'\nimport D14 from './d14'\n\n// const /* int */ ORDER_BYTE_LENGTH = 1\n// const /* int */ COMPRESSED_BYTE_LENGTH = 4\nconst /* int */ RAW_BYTE_LENGTH = 4\n// const /* int */ PREFIX_BYTE_LENGTH =\n// ORDER_BYTE_LENGTH + COMPRESSED_BYTE_LENGTH + RAW_BYTE_LENGTH\n\n// enum ORDER {\n// ZERO, ONE;\n\n// static ORDER fromInt(const /* int */ value) {\n// try {\n// return ORDER.values()[value];\n// } catch (const ArrayIndexOutOfBoundsException e) {\n// throw new RuntimeException(\"Unknown rANS order: \" + value);\n// }\n// }\n// }\n\n// static ByteBuffer compress(const ByteBuffer input, const ORDER order, const ByteBuffer out) {\n// if (input.remaining() == 0)\n// return EMPTY_BUFFER;\n\n// if (input.remaining() < 4)\n// return encode_order0_way4(input, out);\n\n// switch (order) {\n// case ZERO:\n// return encode_order0_way4(input, out);\n// case ONE:\n// return encode_order1_way4(input, out);\n\n// default:\n// throw new RuntimeException(\"Unknown rANS order: \" + order);\n// }\n// }\n\n// static /* ByteBuffer */ allocateIfNeeded(/* const int */ in_size,\n// /* const ByteBuffer */ out_buf) {\n// const /* int */ compressedSize = (/* int */) (1.05 * in_size + 257 * 257 * 3 + 4);\n// if (out_buf == null)\n// return ByteBuffer.allocate(compressedSize);\n// if (out_buf.remaining() < compressedSize)\n// throw new RuntimeException(\"Insufficient buffer size.\");\n// out_buf.order(ByteOrder.LITTLE_ENDIAN);\n// return out_buf;\n// }\n\n// static ByteBuffer encode_order0_way4(const ByteBuffer input,\n// ByteBuffer out_buf) {\n// const /* int */ in_size = input.remaining();\n// out_buf = allocateIfNeeded(in_size, out_buf);\n// const /* int */ freqTableStart = PREFIX_BYTE_LENGTH;\n// out_buf.position(freqTableStart);\n\n// const /* int */[] F = Frequencies.calcFrequencies_o0(in);\n// const RansEncSymbol[] syms = Frequencies.buildSyms_o0(F);\n\n// const ByteBuffer cp = out_buf.slice();\n// const /* int */ frequencyTable_size = Frequencies.writeFrequencies_o0(cp, F);\n\n// input.rewind();\n// const /* int */ compressedBlob_size = E04.compress(input, syms, cp);\n\n// finalizeCompressed(0, out_buf, in_size, frequencyTable_size,\n// compressedBlob_size);\n// return out_buf;\n// }\n\n// static ByteBuffer encode_order1_way4(const ByteBuffer input,\n// ByteBuffer out_buf) {\n// const /* int */ in_size = input.remaining();\n// out_buf = allocateIfNeeded(in_size, out_buf);\n// const /* int */ freqTableStart = PREFIX_BYTE_LENGTH;\n// out_buf.position(freqTableStart);\n\n// const /* int */[][] F = Frequencies.calcFrequencies_o1(in);\n// const RansEncSymbol[][] syms = Frequencies.buildSyms_o1(F);\n\n// const ByteBuffer cp = out_buf.slice();\n// const /* int */ frequencyTable_size = Frequencies.writeFrequencies_o1(cp, F);\n\n// input.rewind();\n// const /* int */ compressedBlob_size = E14.compress(input, syms, cp);\n\n// finalizeCompressed(1, out_buf, in_size, frequencyTable_size,\n// compressedBlob_size);\n// return out_buf;\n// }\n\n// static void finalizeCompressed(const /* int */ order, const ByteBuffer out_buf,\n// const /* int */ in_size, const /* int */ frequencyTable_size, const /* int */ compressedBlob_size) {\n// out_buf.limit(PREFIX_BYTE_LENGTH + frequencyTable_size\n// + compressedBlob_size);\n// out_buf.put(0, (byte) order);\n// out_buf.order(ByteOrder.LITTLE_ENDIAN);\n// const /* int */ compressedSizeOffset = ORDER_BYTE_LENGTH;\n// out_buf.putInt(compressedSizeOffset, frequencyTable_size\n// + compressedBlob_size);\n// const /* int */ rawSizeOffset = ORDER_BYTE_LENGTH + COMPRESSED_BYTE_LENGTH;\n// out_buf.putInt(rawSizeOffset, in_size);\n// out_buf.rewind();\n// }\n\nfunction /* static ByteBuffer */ uncompressOrder0Way4(\n /* const ByteBuffer */ input,\n /* const ByteBuffer */ out,\n) {\n // input.order(ByteOrder.LITTLE_ENDIAN);\n const D = new Decoding.AriDecoder()\n const syms = new Array(256)\n for (let i = 0; i < syms.length; i += 1) {\n syms[i] = new Decoding.DecodingSymbol()\n }\n\n readStatsO0(input, D, syms)\n\n D04(input, D, syms, out)\n\n return out\n}\n\nfunction /* static ByteBuffer */ uncompressOrder1Way4(\n /* const ByteBuffer */ input,\n /* const ByteBuffer */ output,\n) {\n const D = new Array(256)\n for (let i = 0; i < D.length; i += 1) {\n D[i] = new Decoding.AriDecoder()\n }\n const /* Decoding.RansDecSymbol[][] */ syms = new Array(256)\n for (let i = 0; i < syms.length; i += 1) {\n syms[i] = new Array(256)\n for (let j = 0; j < syms[i].length; j += 1) {\n syms[i][j] = new Decoding.DecodingSymbol()\n }\n }\n readStatsO1(input, D, syms)\n\n D14(input, output, D, syms)\n\n return output\n}\n\n/* compat layer to make a node buffer act like a java ByteBuffer */\nclass ByteBuffer {\n constructor(nodeBuffer, initialInputPosition = 0) {\n this._buffer = nodeBuffer\n this._position = initialInputPosition\n this.length = nodeBuffer.length\n }\n\n get() {\n const b = this._buffer[this._position]\n this._position += 1\n return b\n }\n\n getByte() {\n return this.get()\n }\n\n getByteAt(position) {\n return this._buffer[position]\n }\n\n position() {\n return this._position\n }\n\n put(val) {\n this._buffer[this._position] = val\n this._position += 1\n return val\n }\n\n putAt(position, val) {\n this._buffer[position] = val\n return val\n }\n\n setPosition(pos) {\n this._position = pos\n return pos\n }\n\n getInt() {\n const i = this._buffer.readInt32LE(this._position)\n this._position += 4\n return i\n }\n\n remaining() {\n return this._buffer.length - this._position\n }\n}\n\n// static /* const */ ByteBuffer EMPTY_BUFFER = ByteBuffer.allocate(0);\nexport default function uncompress(\n inputBuffer,\n outputBuffer,\n initialInputPosition = 0,\n) {\n if (inputBuffer.length === 0) {\n outputBuffer.fill(0)\n return outputBuffer\n }\n\n const input = new ByteBuffer(inputBuffer, initialInputPosition)\n // input.order(ByteOrder.LITTLE_ENDIAN);\n\n const order = input.get()\n if (order !== 0 && order !== 1) {\n throw new CramMalformedError(`Invalid rANS order ${order}`)\n }\n\n const /* int */ inputSize = input.getInt()\n if (inputSize !== input.remaining() - RAW_BYTE_LENGTH) {\n throw new CramMalformedError('Incorrect input length.')\n }\n\n const /* int */ outputSize = input.getInt()\n const output = new ByteBuffer(outputBuffer || Buffer.allocUnsafe(outputSize))\n // TODO output.limit(outputSize)\n\n if (output.length < outputSize) {\n throw new CramMalformedError(\n `Output buffer too small to fit ${outputSize} bytes.`,\n )\n }\n\n switch (order) {\n case 0:\n return uncompressOrder0Way4(input, output)\n\n case 1:\n return uncompressOrder1Way4(input, output)\n\n default:\n throw new CramMalformedError(`Invalid rANS order: ${order}`)\n }\n}\n","export class CramBufferOverrunError extends Error {}\n\nexport function getBits(\n data: Buffer,\n cursor: { bytePosition: number; bitPosition: number },\n numBits: number,\n) {\n let val = 0\n if (\n cursor.bytePosition + (7 - cursor.bitPosition + numBits) / 8 >\n data.length\n ) {\n throw new CramBufferOverrunError(\n 'read error during decoding. the file seems to be truncated.',\n )\n }\n for (let dlen = numBits; dlen; dlen--) {\n // get the next `dlen` bits in the input, put them in val\n val <<= 1\n val |= (data[cursor.bytePosition]! >> cursor.bitPosition) & 1\n cursor.bitPosition -= 1\n if (cursor.bitPosition < 0) {\n cursor.bytePosition += 1\n }\n cursor.bitPosition &= 7\n }\n return val\n}\n","import md5 from 'md5'\nimport Long from 'long'\nimport { CramBufferOverrunError } from './codecs/getBits'\n\nexport function itf8Size(v: number) {\n if (!(v & ~0x7f)) {\n return 1\n }\n if (!(v & ~0x3fff)) {\n return 2\n }\n if (!(v & ~0x1fffff)) {\n return 3\n }\n if (!(v & ~0xfffffff)) {\n return 4\n }\n return 5\n}\n\nexport function parseItf8(buffer: Uint8Array, initialOffset: number) {\n let offset = initialOffset\n const countFlags = buffer[offset]!\n let result: number\n if (countFlags < 0x80) {\n result = countFlags\n offset = offset + 1\n } else if (countFlags < 0xc0) {\n result = ((countFlags << 8) | buffer[offset + 1]!) & 0x3fff\n offset = offset + 2\n } else if (countFlags < 0xe0) {\n result =\n ((countFlags << 16) | (buffer[offset + 1]! << 8) | buffer[offset + 2]!) &\n 0x1fffff\n offset = offset + 3\n } else if (countFlags < 0xf0) {\n result =\n ((countFlags << 24) |\n (buffer[offset + 1]! << 16) |\n (buffer[offset + 2]! << 8) |\n buffer[offset + 3]!) &\n 0x0fffffff\n offset = offset + 4\n } else {\n result =\n ((countFlags & 0x0f) << 28) |\n (buffer[offset + 1]! << 20) |\n (buffer[offset + 2]! << 12) |\n (buffer[offset + 3]! << 4) |\n (buffer[offset + 4]! & 0x0f)\n // x=((0xff & 0x0f)<<28) | (0xff<<20) | (0xff<<12) | (0xff<<4) | (0x0f & 0x0f);\n // TODO *val_p = uv < 0x80000000UL ? uv : -((int32_t) (0xffffffffUL - uv)) - 1;\n offset = offset + 5\n }\n if (offset > buffer.length) {\n throw new CramBufferOverrunError(\n 'Attempted to read beyond end of buffer; this file seems truncated.',\n )\n }\n return [result, offset - initialOffset] as const\n}\n\nexport function parseLtf8(buffer: Buffer, initialOffset: number) {\n let offset = initialOffset\n const countFlags = buffer[offset]!\n let n: number | Long\n if (countFlags < 0x80) {\n n = countFlags\n offset += 1\n } else if (countFlags < 0xc0) {\n n = ((buffer[offset]! << 8) | buffer[offset + 1]!) & 0x3fff\n offset += 2\n } else if (countFlags < 0xe0) {\n n =\n ((buffer[offset]! << 16) |\n (buffer[offset + 1]! << 8) |\n buffer[offset + 2]!) &\n 0x1fffff\n n = ((countFlags & 63) << 16) | buffer.readUInt16LE(offset + 1)\n offset += 3\n } else if (countFlags < 0xf0) {\n n =\n ((buffer[offset]! << 24) |\n (buffer[offset + 1]! << 16) |\n (buffer[offset + 2]! << 8) |\n buffer[offset + 3]!) &\n 0x0fffffff\n offset += 4\n } else if (countFlags < 0xf8) {\n n =\n ((buffer[offset]! & 15) * 2 ** 32 + (buffer[offset + 1]! << 24)) |\n ((buffer[offset + 2]! << 16) |\n (buffer[offset + 3]! << 8) |\n buffer[offset + 4]!)\n // TODO *val_p = uv < 0x80000000UL ? uv : -((int32_t) (0xffffffffUL - uv)) - 1;\n offset += 5\n } else if (countFlags < 0xfc) {\n n =\n ((((buffer[offset]! & 7) << 8) | buffer[offset + 1]!) * 2 ** 32 +\n (buffer[offset + 2]! << 24)) |\n ((buffer[offset + 3]! << 16) |\n (buffer[offset + 4]! << 8) |\n buffer[offset + 5]!)\n offset += 6\n } else if (countFlags < 0xfe) {\n n =\n ((((buffer[offset]! & 3) << 16) |\n (buffer[offset + 1]! << 8) |\n buffer[offset + 2]!) *\n 2 ** 32 +\n (buffer[offset + 3]! << 24)) |\n ((buffer[offset + 4]! << 16) |\n (buffer[offset + 5]! << 8) |\n buffer[offset + 6]!)\n offset += 7\n } else if (countFlags < 0xff) {\n n = Long.fromBytesBE(\n buffer.slice(offset + 1, offset + 8) as unknown as number[],\n )\n if (\n n.greaterThan(Number.MAX_SAFE_INTEGER) ||\n n.lessThan(Number.MIN_SAFE_INTEGER)\n ) {\n throw new Error('integer overflow')\n }\n n = n.toNumber()\n offset += 8\n } else {\n n = Long.fromBytesBE(\n buffer.slice(offset + 1, offset + 9) as unknown as number[],\n )\n if (\n n.greaterThan(Number.MAX_SAFE_INTEGER) ||\n n.lessThan(Number.MIN_SAFE_INTEGER)\n ) {\n throw new Error('integer overflow')\n }\n n = n.toNumber()\n offset += 9\n }\n return [n, offset - initialOffset] as const\n}\n\nexport function parseItem(\n buffer: Buffer,\n parser: (buffer: Buffer, offset: number) => { offset: number; value: T },\n startBufferPosition = 0,\n startFilePosition = 0,\n) {\n const { offset, value } = parser(buffer, startBufferPosition)\n return {\n ...value,\n _endPosition: offset + startFilePosition,\n _size: offset - startBufferPosition,\n }\n}\n\n// this would be nice as a decorator, but i'm a little worried about babel\n// support for it going away or changing. memoizes a method in the stupidest\n// possible way, with no regard for the arguments. actually, this only works\n// on methods that take no arguments\nexport function tinyMemoize(_class: any, methodName: any) {\n const method = _class.prototype[methodName]\n const memoAttrName = `_memo_${methodName}`\n _class.prototype[methodName] = function _tinyMemoized() {\n if (!(memoAttrName in this)) {\n const res = method.call(this)\n this[memoAttrName] = res\n Promise.resolve(res).catch(() => {\n \n delete this[memoAttrName]\n })\n }\n return this[memoAttrName]\n }\n}\n\nexport function sequenceMD5(seq: string) {\n return md5(seq.toUpperCase().replaceAll(/[^\\u0021-\\u007e]/g, ''))\n}\n","import { TupleOf } from '../typescript'\nimport { parseItf8, parseLtf8 } from './util'\nimport { DataSeriesEncodingMap } from './codecs/dataSeriesTypes'\nimport { CramEncoding } from './encoding'\n\nexport function cramFileDefinition() {\n return {\n parser: (buffer: Buffer, _startOffset = 0) => {\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n const magic = buffer.subarray(offset, offset + 4).toString()\n offset += 4\n const majorVersion = dataView.getUint8(offset)\n offset += 1\n const minorVersion = dataView.getUint8(offset)\n offset += 1\n const fileId = b\n .subarray(offset, offset + 20)\n .toString()\n .replaceAll('\\0', '')\n offset += 20\n return {\n value: {\n magic,\n majorVersion,\n minorVersion,\n fileId,\n },\n offset,\n }\n },\n maxLength: 26,\n }\n}\nexport function cramBlockHeader() {\n const parser = (buffer: Buffer, _startOffset = 0) => {\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n let offset = 0\n const d = dataView.getUint8(offset)\n const compressionMethod = [\n 'raw',\n 'gzip',\n 'bzip2',\n 'lzma',\n 'rans',\n 'rans4x16',\n 'arith',\n 'fqzcomp',\n 'tok3',\n ][d]\n if (!compressionMethod) {\n throw new Error(`compression method number ${d} not implemented`)\n }\n offset += 1\n\n const c = dataView.getUint8(offset)\n const contentType = [\n 'FILE_HEADER',\n 'COMPRESSION_HEADER',\n 'MAPPED_SLICE_HEADER',\n 'UNMAPPED_SLICE_HEADER', // < only used in cram v1\n 'EXTERNAL_DATA',\n 'CORE_DATA',\n ][c]\n if (!contentType) {\n throw new Error(`invalid block content type id ${c}`)\n }\n offset += 1\n\n const [contentId, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const [compressedSize, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n const [uncompressedSize, newOffset3] = parseItf8(buffer, offset)\n offset += newOffset3\n return {\n offset,\n value: {\n uncompressedSize,\n compressedSize,\n contentId,\n contentType: contentType as\n | 'FILE_HEADER'\n | 'COMPRESSION_HEADER'\n | 'MAPPED_SLICE_HEADER'\n | 'UNMAPPED_SLICE_HEADER' // < only used in cram v1\n | 'EXTERNAL_DATA'\n | 'CORE_DATA',\n compressionMethod: compressionMethod as CompressionMethod,\n },\n }\n }\n return { parser, maxLength: 17 }\n}\n\nexport function cramBlockCrc32() {\n return {\n parser: (buffer: Buffer, offset: number) => {\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n const crc32 = dataView.getUint32(offset, true)\n offset += 4\n return {\n offset,\n value: {\n crc32,\n },\n }\n },\n maxLength: 4,\n }\n}\n\nexport type CramTagDictionary = string[][]\n\nfunction makeTagSet(buffer: Buffer, stringStart: number, stringEnd: number) {\n const str = buffer.toString('utf8', stringStart, stringEnd)\n const tags = []\n for (let i = 0; i < str.length; i += 3) {\n tags.push(str.slice(i, i + 3))\n }\n return tags\n}\n\nexport function cramTagDictionary() {\n return {\n parser: (buffer: Buffer, offset: number) => {\n const [size, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const subbuf = buffer.subarray(offset, offset + size)\n offset += size\n\n const tagSets = []\n let stringStart = 0\n let i = 0\n for (; i < subbuf.length; i++) {\n if (!subbuf[i]) {\n tagSets.push(makeTagSet(subbuf, stringStart, i))\n stringStart = i + 1\n }\n }\n if (i > stringStart) {\n tagSets.push(makeTagSet(subbuf, stringStart, i))\n }\n\n return {\n value: {\n size,\n ents: tagSets,\n },\n offset,\n }\n },\n }\n}\n\nexport interface CramPreservationMap {\n MI: boolean\n UI: boolean\n PI: boolean\n RN: boolean\n AP: boolean\n RR: boolean\n SM: [number, number, number, number, number]\n TD: CramTagDictionary\n}\n\nexport function cramPreservationMap() {\n return {\n parser: (buffer: Buffer, offset: number) => {\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n const [mapSize, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const [mapCount, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n const ents = []\n for (let i = 0; i < mapCount; i++) {\n const key =\n String.fromCharCode(buffer[offset]!) +\n String.fromCharCode(buffer[offset + 1]!)\n offset += 2\n\n if (\n key === 'MI' ||\n key === 'UI' ||\n key === 'PI' ||\n key === 'RN' ||\n key === 'AP' ||\n key === 'RR'\n ) {\n ents.push({\n key,\n value: !!dataView.getUint8(offset),\n })\n offset += 1\n } else if (key === 'SM') {\n ents.push({\n key,\n value: [\n dataView.getUint8(offset),\n dataView.getUint8(offset + 1),\n dataView.getUint8(offset + 2),\n dataView.getUint8(offset + 3),\n dataView.getUint8(offset + 4),\n ],\n })\n offset += 5\n } else if (key === 'TD') {\n const { offset: offsetRet, value } = cramTagDictionary().parser(\n buffer,\n offset,\n )\n ents.push({ key, value: value.ents })\n offset = offsetRet\n } else {\n throw new Error(`unknown key ${key}`)\n }\n }\n return {\n value: {\n mapSize,\n mapCount,\n ents,\n },\n offset,\n }\n },\n }\n}\n\nfunction formatMap(data: { ents: { key: string; value: unknown }[] }) {\n const map: Record = {}\n for (const { key, value } of data.ents) {\n if (map[key]) {\n console.warn(`duplicate key ${key} in map`)\n }\n map[key] = value\n }\n return map\n}\n\nexport interface MappedSliceHeader {\n refSeqId: number\n refSeqStart: number\n refSeqSpan: number\n numRecords: number\n recordCounter: number\n numBlocks: number\n numContentIds: number\n contentIds: number[]\n refBaseBlockId: number\n md5?: TupleOf\n}\n\nexport interface UnmappedSliceHeader {\n numRecords: number\n recordCounter: number\n numBlocks: number\n numContentIds: number\n contentIds: number[]\n md5?: TupleOf\n}\n\nexport function isMappedSliceHeader(\n header: unknown,\n): header is MappedSliceHeader {\n return typeof (header as any).refSeqId === 'number'\n}\n\ninterface Value {\n codecId: number\n parametersBytes: number\n parameters: Record\n}\n// assemble a section parser for the unmapped slice header, with slight\n// variations depending on the major version of the cram file\nfunction cramUnmappedSliceHeader(majorVersion: number) {\n let maxLength = 0\n maxLength += 5\n maxLength += 9\n maxLength += 5 * 2\n maxLength += 16\n\n const parser = (buffer: Buffer, offset: number) => {\n const [numRecords, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n let recordCounter = 0\n\n // recordCounter is itf8 in a CRAM v2 file, absent in CRAM v1\n if (majorVersion >= 3) {\n const [rc, newOffset2] = parseLtf8(buffer, offset)\n offset += newOffset2\n recordCounter = rc\n } else if (majorVersion === 2) {\n const [rc, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n recordCounter = rc\n } else {\n console.warn('recordCounter=0')\n }\n\n const [numBlocks, newOffset3] = parseItf8(buffer, offset)\n offset += newOffset3\n const [numContentIds, newOffset4] = parseItf8(buffer, offset)\n offset += newOffset4\n const contentIds = []\n for (let i = 0; i < numContentIds; i++) {\n const [id, newOffset5] = parseItf8(buffer, offset)\n offset += newOffset5\n contentIds.push(id)\n }\n\n // the md5 sum is missing in cram v1\n let md5: TupleOf | undefined\n if (majorVersion >= 2) {\n md5 = [...buffer.subarray(offset, offset + 16)] as TupleOf\n offset += 16\n }\n\n return {\n value: {\n recordCounter,\n md5,\n contentIds,\n numContentIds,\n numBlocks,\n numRecords,\n },\n offset,\n }\n }\n return {\n parser,\n maxLength: (numContentIds: number) => maxLength + numContentIds * 5,\n }\n}\n\n// assembles a section parser for the unmapped slice header, with slight\n// variations depending on the major version of the cram file\nfunction cramMappedSliceHeader(majorVersion: number) {\n let maxLength = 0\n maxLength += 5 * 4 // EL0\n maxLength += 9 // EL1\n maxLength += 5 * 3 // EL2 ITF8s\n maxLength += 16 // MD5\n\n return {\n parser: (buffer: Buffer, offset: number) => {\n // L0\n const [refSeqId, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const [refSeqStart, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n const [refSeqSpan, newOffset3] = parseItf8(buffer, offset)\n offset += newOffset3\n const [numRecords, newOffset4] = parseItf8(buffer, offset)\n offset += newOffset4\n // EL0\n\n // L1\n let recordCounter = 0\n if (majorVersion >= 3) {\n const [rc, newOffset5] = parseLtf8(buffer, offset)\n offset += newOffset5\n recordCounter = rc\n } else if (majorVersion === 2) {\n const [rc, newOffset5] = parseItf8(buffer, offset)\n offset += newOffset5\n recordCounter = rc\n } else {\n console.warn('majorVersion is <2, recordCounter set to 0')\n }\n // EL1\n\n // L2\n const [numBlocks, newOffset6] = parseItf8(buffer, offset)\n offset += newOffset6\n const [numContentIds, newOffset7] = parseItf8(buffer, offset)\n offset += newOffset7\n const contentIds = []\n for (let i = 0; i < numContentIds; i++) {\n const [id, newOffset5] = parseItf8(buffer, offset)\n offset += newOffset5\n contentIds.push(id)\n }\n const [refBaseBlockId, newOffset8] = parseItf8(buffer, offset)\n offset += newOffset8\n // EL2\n\n // the md5 sum is missing in cram v1\n let md5: TupleOf | undefined\n if (majorVersion >= 2) {\n md5 = [...buffer.subarray(offset, offset + 16)] as TupleOf\n offset += 16\n }\n\n return {\n value: {\n md5,\n numBlocks,\n numRecords,\n numContentIds,\n refSeqSpan,\n refSeqId,\n refSeqStart,\n recordCounter,\n refBaseBlockId,\n contentIds,\n },\n offset,\n }\n },\n maxLength: (numContentIds: number) => maxLength + numContentIds * 5,\n }\n}\n\nfunction cramEncoding() {\n return {\n parser: (buffer: Buffer, offset: number) => cramEncodingSub(buffer, offset),\n }\n}\n\nfunction cramEncodingSub(\n buffer: Buffer,\n offset: number,\n): { value: Value; offset: number } {\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n const [codecId, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const [parametersBytes, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n\n const parameters = {} as Record\n\n if (codecId === 0) {\n // NULL\n } else if (codecId === 1) {\n // EXTERNAL\n const [bc, newOffset3] = parseItf8(buffer, offset)\n parameters.blockContentId = bc\n offset += newOffset3\n } else if (codecId === 2) {\n // GOLUMB\n const [off, newOffset3] = parseItf8(buffer, offset)\n parameters.offset = off\n offset += newOffset3\n const [M2, newOffset4] = parseItf8(buffer, offset)\n parameters.M = M2\n offset += newOffset4\n } else if (codecId === 3) {\n // HUFFMAN_INT\n const val = parseItf8(buffer, offset)\n const numCodes = val[0]\n offset += val[1]\n const symbols = [] as number[]\n for (let i = 0; i < numCodes; i++) {\n const code = parseItf8(buffer, offset)\n symbols.push(code[0])\n offset += code[1]\n }\n parameters.symbols = symbols\n const val2 = parseItf8(buffer, offset)\n const numLengths = val[0]\n parameters.numLengths = numLengths\n parameters.numCodes = numCodes\n parameters.numLengths = numLengths\n offset += val2[1]\n const bitLengths = [] as number[]\n for (let i = 0; i < numLengths; i++) {\n const len = parseItf8(buffer, offset)\n offset += len[1]\n bitLengths.push(len[0])\n }\n parameters.bitLengths = bitLengths\n } else if (codecId === 4) {\n // BYTE_ARRAY_LEN\n const { value: lengthsEncoding, offset: newOffset1 } = cramEncodingSub(\n buffer,\n offset,\n )\n parameters.lengthsEncoding = lengthsEncoding\n offset = newOffset1\n const { value: valuesEncoding, offset: newOffset2 } = cramEncodingSub(\n buffer,\n offset,\n )\n parameters.valuesEncoding = valuesEncoding\n offset = newOffset2\n } else if (codecId === 5) {\n // BYTE_ARRAY_STOP\n parameters.stopByte = dataView.getUint8(offset)\n offset += 1\n const [blockContentId, newOffset1] = parseItf8(buffer, offset)\n parameters.blockContentId = blockContentId\n offset += newOffset1\n } else if (codecId === 6) {\n // BETA\n const [off, newOffset1] = parseItf8(buffer, offset)\n parameters.offset = off\n offset += newOffset1\n const [len, newOffset2] = parseItf8(buffer, offset)\n parameters.length = len\n offset += newOffset2\n } else if (codecId === 7) {\n // SUBEXP\n const [off, newOffset1] = parseItf8(buffer, offset)\n parameters.offset = off\n offset += newOffset1\n const [K, newOffset2] = parseItf8(buffer, offset)\n parameters.K = K\n offset += newOffset2\n } else if (codecId === 8) {\n // GOLOMB_RICE\n const [off, newOffset1] = parseItf8(buffer, offset)\n parameters.offset = off\n offset += newOffset1\n const [l2m, newOffset2] = parseItf8(buffer, offset)\n parameters.log2m = l2m\n offset += newOffset2\n } else if (codecId === 9) {\n // GAMMA\n const [off, newOffset1] = parseItf8(buffer, offset)\n parameters.offset = off\n offset += newOffset1\n } else {\n throw new Error(`unknown codecId ${codecId}`)\n }\n\n return {\n value: {\n codecId,\n parametersBytes,\n parameters,\n },\n offset,\n }\n}\n\nfunction cramDataSeriesEncodingMap() {\n return {\n parser: (buffer: Buffer, offset: number) => {\n const [mapSize, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const [mapCount, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n const ents = []\n for (let i = 0; i < mapCount; i++) {\n const key =\n String.fromCharCode(buffer[offset]!) +\n String.fromCharCode(buffer[offset + 1]!)\n offset += 2\n\n const { value, offset: newOffset4 } = cramEncodingSub(buffer, offset)\n offset = newOffset4\n ents.push({ key, value })\n }\n return {\n value: {\n mapSize,\n ents,\n mapCount,\n },\n offset,\n }\n },\n }\n}\n\nfunction cramTagEncodingMap() {\n return {\n parser: (buffer: Buffer, offset: number) => {\n const [mapSize, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const [mapCount, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n const ents = []\n for (let i = 0; i < mapCount; i++) {\n const [k0, newOffset3] = parseItf8(buffer, offset)\n offset += newOffset3\n const key =\n String.fromCharCode((k0 >> 16) & 0xff) +\n String.fromCharCode((k0 >> 8) & 0xff) +\n String.fromCharCode(k0 & 0xff)\n\n const { value, offset: newOffset4 } = cramEncodingSub(buffer, offset)\n offset = newOffset4\n ents.push({ key, value })\n }\n return {\n value: {\n mapSize,\n ents,\n mapCount,\n },\n offset,\n }\n },\n }\n}\n\nfunction cramCompressionHeader() {\n return {\n parser: (buffer: Buffer, offset: number) => {\n // TODO: if we want to support CRAM v1, we will need to refactor\n // compression header into 2 parts to parse the landmarks, like the\n // container header\n const { value: preservation, offset: newOffset1 } =\n cramPreservationMap().parser(buffer, offset)\n offset = newOffset1\n\n const { value: dataSeriesEncoding, offset: newOffset2 } =\n cramDataSeriesEncodingMap().parser(buffer, offset)\n offset = newOffset2\n\n const { value: tagEncoding, offset: newOffset3 } =\n cramTagEncodingMap().parser(buffer, offset)\n offset = newOffset3\n\n return {\n value: {\n dataSeriesEncoding: formatMap(\n dataSeriesEncoding,\n ) as DataSeriesEncodingMap,\n preservation: formatMap(\n preservation,\n ) as unknown as CramPreservationMap,\n tagEncoding: formatMap(tagEncoding) as Record,\n },\n offset,\n }\n },\n }\n}\n\nfunction cramContainerHeader1(majorVersion: number) {\n let maxLength = 4\n maxLength += 5 * 4\n maxLength += 9\n maxLength += 9\n maxLength += 5 + 5\n return {\n maxLength,\n parser: (buffer: Buffer, offset: number) => {\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n // byte size of the container data (blocks)\n const length = dataView.getInt32(offset, true)\n offset += 4\n // reference sequence identifier, -1 for unmapped reads, -2 for multiple\n // reference sequences\n const [refSeqId, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const [refSeqStart, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n const [alignmentSpan, newOffset3] = parseItf8(buffer, offset)\n offset += newOffset3\n const [numRecords, newOffset4] = parseItf8(buffer, offset)\n offset += newOffset4\n\n let recordCounter = 0\n if (majorVersion >= 3) {\n const [rc, newOffset5] = parseLtf8(buffer, offset)\n recordCounter = rc\n offset += newOffset5\n } else if (majorVersion === 2) {\n const [rc, newOffset5] = parseItf8(buffer, offset)\n recordCounter = rc\n offset += newOffset5\n } else {\n console.warn('setting recordCounter=0')\n }\n\n let numBases: number | undefined\n if (majorVersion > 1) {\n const [n, newOffset5] = parseLtf8(buffer, offset)\n numBases = n\n offset += newOffset5\n }\n const [numBlocks, newOffset6] = parseItf8(buffer, offset)\n offset += newOffset6\n const [numLandmarks, newOffset7] = parseItf8(buffer, offset)\n offset += newOffset7\n return {\n value: {\n length,\n refSeqId,\n refSeqStart,\n alignmentSpan,\n numBlocks,\n numLandmarks,\n numBases,\n recordCounter,\n numRecords,\n },\n offset,\n }\n },\n }\n}\n\nfunction cramContainerHeader2(majorVersion: number) {\n return {\n parser: (buffer: Buffer, offset: number) => {\n const b = buffer\n const dataView = new DataView(b.buffer, b.byteOffset, b.length)\n const [numLandmarks, newOffset1] = parseItf8(buffer, offset)\n offset += newOffset1\n const landmarks = []\n for (let i = 0; i < numLandmarks; i++) {\n const [landmark, newOffset2] = parseItf8(buffer, offset)\n offset += newOffset2\n landmarks.push(landmark)\n }\n\n let crc32: number | undefined\n if (majorVersion >= 3) {\n crc32 = dataView.getUint32(offset, true)\n offset += 4\n }\n return {\n value: {\n ...(crc32 === undefined ? {} : { crc32 }),\n numLandmarks,\n landmarks,\n },\n offset,\n }\n },\n maxLength: (numLandmarks: number) => 5 + 5 * numLandmarks + 4,\n }\n}\n\nexport type CompressionMethod =\n | 'raw'\n | 'gzip'\n | 'bzip2'\n | 'lzma'\n | 'rans'\n | 'rans4x16'\n | 'arith'\n | 'fqzcomp'\n | 'tok3'\n\nexport interface BlockHeader {\n compressionMethod: CompressionMethod\n contentType:\n | 'FILE_HEADER'\n | 'COMPRESSION_HEADER'\n | 'MAPPED_SLICE_HEADER'\n | 'UNMAPPED_SLICE_HEADER' // < only used in cram v1\n | 'EXTERNAL_DATA'\n | 'CORE_DATA'\n contentId: number\n compressedSize: number\n uncompressedSize: number\n}\n\nexport interface CramCompressionHeader {\n preservation: CramPreservationMap\n dataSeriesEncoding: DataSeriesEncodingMap\n tagEncoding: Record\n _size: number\n _endPosition: number\n}\n\nexport function getSectionParsers(majorVersion: number) {\n return {\n cramFileDefinition: cramFileDefinition(),\n cramBlockHeader: cramBlockHeader(),\n cramBlockCrc32: cramBlockCrc32(),\n cramDataSeriesEncodingMap: cramDataSeriesEncodingMap(),\n cramTagEncodingMap: cramTagEncodingMap(),\n cramCompressionHeader: cramCompressionHeader(),\n cramEncoding: cramEncoding(),\n cramUnmappedSliceHeader: cramUnmappedSliceHeader(majorVersion),\n cramMappedSliceHeader: cramMappedSliceHeader(majorVersion),\n cramContainerHeader1: cramContainerHeader1(majorVersion),\n cramContainerHeader2: cramContainerHeader2(majorVersion),\n }\n}\n","import { CramMalformedError } from '../../errors'\nimport {\n BamFlagsDecoder,\n CramFlagsDecoder,\n MateFlagsDecoder,\n ReadFeature,\n} from '../record'\nimport CramSlice, { SliceHeader } from './index'\nimport { isMappedSliceHeader } from '../sectionParsers'\nimport CramContainerCompressionScheme, {\n DataSeriesTypes,\n} from '../container/compressionScheme'\nimport { CramFileBlock } from '../file'\nimport { Cursors, DataTypeMapping } from '../codecs/_base'\nimport { DataSeriesEncodingKey } from '../codecs/dataSeriesTypes'\n\n/**\n * given a Buffer, read a string up to the first null character\n * @private\n */\nfunction readNullTerminatedString(buffer: Uint8Array) {\n let r = ''\n for (let i = 0; i < buffer.length && buffer[i] !== 0; i++) {\n r += String.fromCharCode(buffer[i]!)\n }\n return r\n}\n\n/**\n * parse a BAM tag's array value from a binary buffer\n * @private\n */\nfunction parseTagValueArray(buffer: Uint8Array) {\n const arrayType = String.fromCharCode(buffer[0]!)\n const length = Int32Array.from(buffer.slice(1))[0]!\n\n const array: number[] = new Array(length)\n buffer = buffer.slice(5)\n\n if (arrayType === 'c') {\n const arr = new Int8Array(buffer.buffer)\n for (let i = 0; i < length; i += 1) {\n array[i] = arr[i]!\n }\n } else if (arrayType === 'C') {\n const arr = new Uint8Array(buffer.buffer)\n for (let i = 0; i < length; i += 1) {\n array[i] = arr[i]!\n }\n } else if (arrayType === 's') {\n const arr = new Int16Array(buffer.buffer)\n for (let i = 0; i < length; i += 1) {\n array[i] = arr[i]!\n }\n } else if (arrayType === 'S') {\n const arr = new Uint16Array(buffer.buffer)\n for (let i = 0; i < length; i += 1) {\n array[i] = arr[i]!\n }\n } else if (arrayType === 'i') {\n const arr = new Int32Array(buffer.buffer)\n for (let i = 0; i < length; i += 1) {\n array[i] = arr[i]!\n }\n } else if (arrayType === 'I') {\n const arr = new Uint32Array(buffer.buffer)\n for (let i = 0; i < length; i += 1) {\n array[i] = arr[i]!\n }\n } else if (arrayType === 'f') {\n const arr = new Float32Array(buffer.buffer)\n for (let i = 0; i < length; i += 1) {\n array[i] = arr[i]!\n }\n } else {\n throw new Error(`unknown type: ${arrayType}`)\n }\n\n return array\n}\n\nfunction parseTagData(tagType: string, buffer: Uint8Array) {\n if (tagType === 'Z') {\n return readNullTerminatedString(buffer)\n }\n if (tagType === 'A') {\n return String.fromCharCode(buffer[0]!)\n }\n if (tagType === 'I') {\n return new Uint32Array(buffer.buffer)[0]\n }\n if (tagType === 'i') {\n return new Int32Array(buffer.buffer)[0]\n }\n if (tagType === 's') {\n return new Int16Array(buffer.buffer)[0]\n }\n if (tagType === 'S') {\n return new Uint16Array(buffer.buffer)[0]\n }\n if (tagType === 'c') {\n return new Int8Array(buffer.buffer)[0]\n }\n if (tagType === 'C') {\n return buffer[0]!\n }\n if (tagType === 'f') {\n return new Float32Array(buffer.buffer)[0]\n }\n if (tagType === 'H') {\n return Number.parseInt(\n readNullTerminatedString(buffer).replace(/^0x/, ''),\n 16,\n )\n }\n if (tagType === 'B') {\n return parseTagValueArray(buffer)\n }\n\n throw new CramMalformedError(`Unrecognized tag type ${tagType}`)\n}\n\nfunction decodeReadFeatures(\n alignmentStart: number,\n readFeatureCount: number,\n decodeDataSeries: any,\n compressionScheme: CramContainerCompressionScheme,\n majorVersion: number,\n) {\n let currentReadPos = 0\n let currentRefPos = alignmentStart - 1\n const readFeatures: ReadFeature[] = new Array(readFeatureCount)\n\n function decodeRFData([type, dataSeriesName]: readonly [\n type: string,\n dataSeriesName: string,\n ]) {\n const data = decodeDataSeries(dataSeriesName)\n if (type === 'character') {\n return String.fromCharCode(data)\n }\n if (type === 'string') {\n let r = ''\n for (let i = 0; i < data.byteLength; i++) {\n r += String.fromCharCode(data[i])\n }\n return r\n }\n if (type === 'numArray') {\n return data.toArray()\n }\n // else if (type === 'number') {\n // return data[0]\n // }\n return data\n }\n\n for (let i = 0; i < readFeatureCount; i += 1) {\n const code = String.fromCharCode(decodeDataSeries('FC'))\n\n const readPosDelta = decodeDataSeries('FP')\n\n // map of operator name -> data series name\n const data1Schema = {\n B: ['character', 'BA'] as const,\n S: ['string', majorVersion > 1 ? 'SC' : 'IN'] as const, // IN if cram v1, SC otherwise\n X: ['number', 'BS'] as const,\n D: ['number', 'DL'] as const,\n I: ['string', 'IN'] as const,\n i: ['character', 'BA'] as const,\n b: ['string', 'BB'] as const,\n q: ['numArray', 'QQ'] as const,\n Q: ['number', 'QS'] as const,\n H: ['number', 'HC'] as const,\n P: ['number', 'PD'] as const,\n N: ['number', 'RS'] as const,\n }[code]\n\n if (!data1Schema) {\n throw new CramMalformedError(`invalid read feature code \"${code}\"`)\n }\n\n let data = decodeRFData(data1Schema)\n\n // if this is a tag with two data items, make the data an array and add the second item\n const data2Schema = { B: ['number', 'QS'] as const }[code]\n if (data2Schema) {\n data = [data, decodeRFData(data2Schema)]\n }\n\n currentReadPos += readPosDelta\n const pos = currentReadPos\n\n currentRefPos += readPosDelta\n const refPos = currentRefPos\n\n // for gapping features, adjust the reference position for read features that follow\n if (code === 'D' || code === 'N') {\n currentRefPos += data\n } else if (code === 'I' || code === 'S') {\n currentRefPos -= data.length\n } else if (code === 'i') {\n currentRefPos -= 1\n }\n\n readFeatures[i] = { code, pos, refPos, data }\n }\n return readFeatures\n}\n\nexport type DataSeriesDecoder = (\n dataSeriesName: T,\n) => DataTypeMapping[DataSeriesTypes[T]]\n\nexport default function decodeRecord(\n slice: CramSlice,\n decodeDataSeries: DataSeriesDecoder,\n compressionScheme: CramContainerCompressionScheme,\n sliceHeader: SliceHeader,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n majorVersion: number,\n recordNumber: number,\n) {\n let flags = decodeDataSeries('BF')\n\n // note: the C data type of compressionFlags is byte in cram v1\n // and int32 in cram v2+, but that does not matter for us here\n // in javascript land.\n const cramFlags = decodeDataSeries('CF')\n\n if (!isMappedSliceHeader(sliceHeader.parsedContent)) {\n throw new Error('slice header not mapped')\n }\n\n const sequenceId =\n majorVersion > 1 && sliceHeader.parsedContent.refSeqId === -2\n ? decodeDataSeries('RI')\n : sliceHeader.parsedContent.refSeqId\n\n const readLength = decodeDataSeries('RL')\n // if APDelta, will calculate the true start in a second pass\n let alignmentStart = decodeDataSeries('AP')\n if (compressionScheme.APdelta) {\n alignmentStart = alignmentStart + cursors.lastAlignmentStart\n }\n cursors.lastAlignmentStart = alignmentStart\n const readGroupId = decodeDataSeries('RG')\n\n let readName: string | undefined\n if (compressionScheme.readNamesIncluded) {\n readName = readNullTerminatedString(decodeDataSeries('RN'))\n }\n\n let mateToUse:\n | {\n mateFlags: number\n mateSequenceId: number\n mateAlignmentStart: number\n mateReadName: string | undefined\n }\n | undefined\n let templateSize: number | undefined\n let mateRecordNumber: number | undefined\n // mate record\n if (CramFlagsDecoder.isDetached(cramFlags)) {\n // note: the MF is a byte in 1.0, int32 in 2+, but once again this doesn't\n // matter for javascript\n const mateFlags = decodeDataSeries('MF')\n let mateReadName: string | undefined\n if (!compressionScheme.readNamesIncluded) {\n mateReadName = readNullTerminatedString(decodeDataSeries('RN'))\n readName = mateReadName\n }\n const mateSequenceId = decodeDataSeries('NS')\n const mateAlignmentStart = decodeDataSeries('NP')\n if (mateFlags || mateSequenceId > -1) {\n mateToUse = {\n mateFlags,\n mateSequenceId,\n mateAlignmentStart,\n mateReadName,\n }\n }\n\n templateSize = decodeDataSeries('TS')\n\n // set mate unmapped if needed\n if (MateFlagsDecoder.isUnmapped(mateFlags)) {\n flags = BamFlagsDecoder.setMateUnmapped(flags)\n }\n // set mate reversed if needed\n if (MateFlagsDecoder.isOnNegativeStrand(mateFlags)) {\n flags = BamFlagsDecoder.setMateReverseComplemented(flags)\n }\n\n // detachedCount++\n } else if (CramFlagsDecoder.isWithMateDownstream(cramFlags)) {\n mateRecordNumber = decodeDataSeries('NF') + recordNumber + 1\n }\n\n // TODO: the aux tag parsing will have to be refactored if we want to support\n // cram v1\n const TLindex = decodeDataSeries('TL')\n if (TLindex < 0) {\n /* TODO: check nTL: TLindex >= compressionHeader.tagEncoding.size */\n throw new CramMalformedError('invalid TL index')\n }\n\n const tags: Record = {}\n // TN = tag names\n const TN = compressionScheme.getTagNames(TLindex)!\n const ntags = TN.length\n for (let i = 0; i < ntags; i += 1) {\n const tagId = TN[i]!\n const tagName = tagId.slice(0, 2)\n const tagType = tagId.slice(2, 3)\n\n const tagData = compressionScheme\n .getCodecForTag(tagId)\n .decode(slice, coreDataBlock, blocksByContentId, cursors)\n tags[tagName] =\n typeof tagData === 'number' ? tagData : parseTagData(tagType, tagData)\n }\n\n let readFeatures: ReadFeature[] | undefined\n let lengthOnRef: number | undefined\n let mappingQuality: number | undefined\n let qualityScores: number[] | undefined | null\n let readBases = undefined\n if (!BamFlagsDecoder.isSegmentUnmapped(flags)) {\n // reading read features\n const readFeatureCount = decodeDataSeries('FN')\n if (readFeatureCount) {\n readFeatures = decodeReadFeatures(\n alignmentStart,\n readFeatureCount,\n decodeDataSeries,\n compressionScheme,\n majorVersion,\n )\n }\n\n // compute the read's true span on the reference sequence, and the end\n // coordinate of the alignment on the reference\n lengthOnRef = readLength\n if (readFeatures) {\n for (const { code, data } of readFeatures) {\n if (code === 'D' || code === 'N') {\n lengthOnRef += data\n } else if (code === 'I' || code === 'S') {\n lengthOnRef = lengthOnRef - data.length\n } else if (code === 'i') {\n lengthOnRef = lengthOnRef - 1\n }\n }\n }\n if (Number.isNaN(lengthOnRef)) {\n console.warn(\n `${\n readName || `${sequenceId}:${alignmentStart}`\n } record has invalid read features`,\n )\n lengthOnRef = readLength\n }\n\n // mapping quality\n mappingQuality = decodeDataSeries('MQ')\n if (CramFlagsDecoder.isPreservingQualityScores(cramFlags)) {\n qualityScores = new Array(readLength)\n for (let i = 0; i < qualityScores.length; i++) {\n qualityScores[i] = decodeDataSeries('QS')\n }\n }\n } else if (CramFlagsDecoder.isDecodeSequenceAsStar(cramFlags)) {\n readBases = null\n qualityScores = null\n } else {\n const bases = new Array(readLength) as number[]\n for (let i = 0; i < bases.length; i += 1) {\n bases[i] = decodeDataSeries('BA')\n }\n readBases = String.fromCharCode(...bases)\n\n if (CramFlagsDecoder.isPreservingQualityScores(cramFlags)) {\n qualityScores = new Array(readLength)\n for (let i = 0; i < bases.length; i += 1) {\n qualityScores[i] = decodeDataSeries('QS')\n }\n }\n }\n\n return {\n readLength,\n sequenceId,\n cramFlags,\n flags,\n alignmentStart,\n readGroupId,\n readName,\n mateToUse,\n templateSize,\n mateRecordNumber,\n readFeatures,\n lengthOnRef,\n mappingQuality,\n qualityScores,\n readBases,\n tags,\n }\n}\n","import { CramArgumentError, CramMalformedError } from '../../errors'\nimport { parseItem, sequenceMD5, tinyMemoize } from '../util'\n\nimport Constants from '../constants'\nimport decodeRecord, { DataSeriesDecoder } from './decodeRecord'\nimport CramRecord from '../record'\nimport CramContainer from '../container'\nimport CramFile, { CramFileBlock } from '../file'\nimport {\n getSectionParsers,\n isMappedSliceHeader,\n MappedSliceHeader,\n UnmappedSliceHeader,\n} from '../sectionParsers'\nimport { CramBufferOverrunError } from '../codecs/getBits'\nimport { Cursors, DataTypeMapping } from '../codecs/_base'\nimport { DataSeriesEncodingKey } from '../codecs/dataSeriesTypes'\nimport { DataSeriesTypes } from '../container/compressionScheme'\n\nexport type SliceHeader = CramFileBlock & {\n parsedContent: MappedSliceHeader | UnmappedSliceHeader\n}\n\n/**\n * @private\n * Try to estimate the template length from a bunch of interrelated multi-segment reads.\n * @param {Array[CramRecord]} allRecords\n * @param {number} currentRecordNumber\n * @param {CramRecord} thisRecord\n */\nfunction calculateMultiSegmentMatedTemplateLength(\n allRecords: CramRecord[],\n currentRecordNumber: number,\n thisRecord: CramRecord,\n) {\n function getAllMatedRecords(startRecord: CramRecord) {\n const records = [startRecord]\n if (\n startRecord.mateRecordNumber !== undefined &&\n startRecord.mateRecordNumber >= 0\n ) {\n const mateRecord = allRecords[startRecord.mateRecordNumber]\n if (!mateRecord) {\n throw new CramMalformedError(\n 'intra-slice mate record not found, this file seems malformed',\n )\n }\n records.push(...getAllMatedRecords(mateRecord))\n }\n return records\n }\n\n const matedRecords = getAllMatedRecords(thisRecord)\n const starts = matedRecords.map(r => r.alignmentStart)\n const ends = matedRecords.map(r => r.alignmentStart + r.readLength - 1)\n const estimatedTemplateLength = Math.max(...ends) - Math.min(...starts) + 1\n if (estimatedTemplateLength >= 0) {\n matedRecords.forEach(r => {\n if (r.templateLength !== undefined) {\n throw new CramMalformedError(\n 'mate pair group has some members that have template lengths already, this file seems malformed',\n )\n }\n r.templateLength = estimatedTemplateLength\n })\n }\n}\n\n/**\n * @private\n * Attempt to calculate the `templateLength` for a pair of intra-slice paired reads.\n * Ported from htslib. Algorithm is imperfect.\n * @param {CramRecord} thisRecord\n * @param {CramRecord} mateRecord\n */\nfunction calculateIntraSliceMatePairTemplateLength(\n thisRecord: CramRecord,\n mateRecord: CramRecord,\n) {\n // this just estimates the template length by using the simple (non-gapped) end coordinate of each\n // read, because gapping in the alignment doesn't mean the template is longer or shorter\n const start = Math.min(thisRecord.alignmentStart, mateRecord.alignmentStart)\n const end = Math.max(\n thisRecord.alignmentStart + thisRecord.readLength - 1,\n mateRecord.alignmentStart + mateRecord.readLength - 1,\n )\n const lengthEstimate = end - start + 1\n thisRecord.templateLength = lengthEstimate\n mateRecord.templateLength = lengthEstimate\n}\n\n/**\n * @private establishes a mate-pair relationship between two records in the\n * same slice. CRAM compresses mate-pair relationships between records in the\n * same slice down into just one record having the index in the slice of its\n * mate\n */\nfunction associateIntraSliceMate(\n allRecords: CramRecord[],\n currentRecordNumber: number,\n thisRecord: CramRecord,\n mateRecord: CramRecord,\n) {\n const complicatedMultiSegment = !!(\n mateRecord.mate ||\n (mateRecord.mateRecordNumber !== undefined &&\n mateRecord.mateRecordNumber !== currentRecordNumber)\n )\n\n // Deal with lossy read names\n if (!thisRecord.readName) {\n thisRecord.readName = String(thisRecord.uniqueId)\n mateRecord.readName = thisRecord.readName\n }\n\n thisRecord.mate = {\n sequenceId: mateRecord.sequenceId,\n alignmentStart: mateRecord.alignmentStart,\n uniqueId: mateRecord.uniqueId,\n }\n if (mateRecord.readName) {\n thisRecord.mate.readName = mateRecord.readName\n }\n\n // the mate record might have its own mate pointer, if this is some kind of\n // multi-segment (more than paired) scheme, so only relate that one back to this one\n // if it does not have any other relationship\n if (!mateRecord.mate && mateRecord.mateRecordNumber === undefined) {\n mateRecord.mate = {\n sequenceId: thisRecord.sequenceId,\n alignmentStart: thisRecord.alignmentStart,\n uniqueId: thisRecord.uniqueId,\n }\n if (thisRecord.readName) {\n mateRecord.mate.readName = thisRecord.readName\n }\n }\n\n // make sure the proper flags and cramFlags are set on both records\n // paired\n thisRecord.flags |= Constants.BAM_FPAIRED\n\n // set mate unmapped if needed\n if (mateRecord.flags & Constants.BAM_FUNMAP) {\n thisRecord.flags |= Constants.BAM_FMUNMAP\n // thisRecord.templateLength = 0\n }\n if (thisRecord.flags & Constants.BAM_FUNMAP) {\n // thisRecord.templateLength = 0\n mateRecord.flags |= Constants.BAM_FMUNMAP\n }\n\n // set mate reversed if needed\n if (mateRecord.flags & Constants.BAM_FREVERSE) {\n thisRecord.flags |= Constants.BAM_FMREVERSE\n }\n if (thisRecord.flags & Constants.BAM_FREVERSE) {\n mateRecord.flags |= Constants.BAM_FMREVERSE\n }\n\n if (thisRecord.templateLength === undefined) {\n if (complicatedMultiSegment) {\n calculateMultiSegmentMatedTemplateLength(\n allRecords,\n currentRecordNumber,\n thisRecord,\n )\n } else {\n calculateIntraSliceMatePairTemplateLength(thisRecord, mateRecord)\n }\n }\n\n // delete this last because it's used by the\n // complicated template length estimation\n thisRecord.mateRecordNumber = undefined\n}\n\nexport default class CramSlice {\n private file: CramFile\n\n constructor(\n public container: CramContainer,\n public containerPosition: number,\n public sliceSize: number,\n ) {\n this.file = container.file\n }\n\n // memoize\n async getHeader() {\n // fetch and parse the slice header\n const { majorVersion } = await this.file.getDefinition()\n const sectionParsers = getSectionParsers(majorVersion)\n const containerHeader = await this.container.getHeader()\n if (!containerHeader) {\n throw new Error('no container header detected')\n }\n\n const header = await this.file.readBlock(\n containerHeader._endPosition + this.containerPosition,\n )\n if (header === undefined) {\n throw new Error('block header undefined')\n }\n if (header.contentType === 'MAPPED_SLICE_HEADER') {\n const content = parseItem(\n header.content,\n sectionParsers.cramMappedSliceHeader.parser,\n 0,\n containerHeader._endPosition,\n )\n return { ...header, parsedContent: content }\n } else if (header.contentType === 'UNMAPPED_SLICE_HEADER') {\n const content = parseItem(\n header.content,\n sectionParsers.cramUnmappedSliceHeader.parser,\n 0,\n containerHeader._endPosition,\n )\n return { ...header, parsedContent: content }\n } else {\n throw new CramMalformedError(\n `error reading slice header block, invalid content type ${header.contentType}`,\n )\n }\n }\n\n // memoize\n async getBlocks() {\n const header = await this.getHeader()\n // read all the blocks into memory and store them\n let blockPosition = header._endPosition\n const blocks: CramFileBlock[] = new Array(header.parsedContent.numBlocks)\n for (let i = 0; i < blocks.length; i++) {\n const block = await this.file.readBlock(blockPosition)\n if (block === undefined) {\n throw new Error('block undefined')\n }\n blocks[i] = block\n blockPosition = blocks[i]!._endPosition\n }\n\n return blocks\n }\n\n // no memoize\n async getCoreDataBlock() {\n const blocks = await this.getBlocks()\n return blocks[0]!\n }\n\n // memoize\n async _getBlocksContentIdIndex(): Promise> {\n const blocks = await this.getBlocks()\n const blocksByContentId: Record = {}\n blocks.forEach(block => {\n if (block.contentType === 'EXTERNAL_DATA') {\n blocksByContentId[block.contentId] = block\n }\n })\n return blocksByContentId\n }\n\n async getBlockByContentId(id: number) {\n const blocksByContentId = await this._getBlocksContentIdIndex()\n return blocksByContentId[id]\n }\n\n async getReferenceRegion() {\n // read the slice header\n const sliceHeader = (await this.getHeader()).parsedContent\n if (!isMappedSliceHeader(sliceHeader)) {\n throw new Error('slice header not mapped')\n }\n\n if (sliceHeader.refSeqId < 0) {\n return undefined\n }\n\n const compressionScheme = await this.container.getCompressionScheme()\n if (compressionScheme === undefined) {\n throw new Error('compression scheme undefined')\n }\n\n if (sliceHeader.refBaseBlockId >= 0) {\n const refBlock = await this.getBlockByContentId(\n sliceHeader.refBaseBlockId,\n )\n if (!refBlock) {\n throw new CramMalformedError(\n 'embedded reference specified, but reference block does not exist',\n )\n }\n\n // TODO: we do not read anything named 'span'\n // if (sliceHeader.span > refBlock.uncompressedSize) {\n // throw new CramMalformedError('Embedded reference is too small')\n // }\n\n // TODO verify\n return {\n seq: (refBlock as any).data.toString('utf8'),\n start: sliceHeader.refSeqStart,\n end: sliceHeader.refSeqStart + sliceHeader.refSeqSpan - 1,\n span: sliceHeader.refSeqSpan,\n }\n }\n if (\n compressionScheme.referenceRequired ||\n this.file.fetchReferenceSequenceCallback\n ) {\n if (!this.file.fetchReferenceSequenceCallback) {\n throw new Error(\n 'reference sequence not embedded, and seqFetch callback not provided, cannot fetch reference sequence',\n )\n }\n\n const seq = await this.file.fetchReferenceSequenceCallback(\n sliceHeader.refSeqId,\n sliceHeader.refSeqStart,\n sliceHeader.refSeqStart + sliceHeader.refSeqSpan - 1,\n )\n\n if (seq.length !== sliceHeader.refSeqSpan) {\n throw new CramArgumentError(\n 'seqFetch callback returned a reference sequence of the wrong length',\n )\n }\n\n return {\n seq,\n start: sliceHeader.refSeqStart,\n end: sliceHeader.refSeqStart + sliceHeader.refSeqSpan - 1,\n span: sliceHeader.refSeqSpan,\n }\n }\n\n return undefined\n }\n\n getAllRecords() {\n return this.getRecords(() => true)\n }\n\n async _fetchRecords() {\n const { majorVersion } = await this.file.getDefinition()\n\n const compressionScheme = await this.container.getCompressionScheme()\n if (compressionScheme === undefined) {\n throw new Error('compression scheme undefined')\n }\n\n const sliceHeader = await this.getHeader()\n const blocksByContentId = await this._getBlocksContentIdIndex()\n\n // check MD5 of reference if available\n if (\n majorVersion > 1 &&\n this.file.options.checkSequenceMD5 &&\n isMappedSliceHeader(sliceHeader.parsedContent) &&\n sliceHeader.parsedContent.refSeqId >= 0 &&\n sliceHeader.parsedContent.md5?.join('') !== '0000000000000000'\n ) {\n const refRegion = await this.getReferenceRegion()\n if (refRegion) {\n const { seq, start, end } = refRegion\n const seqMd5 = sequenceMD5(seq)\n const storedMd5 = sliceHeader.parsedContent.md5\n ?.map(byte => (byte < 16 ? '0' : '') + byte.toString(16))\n .join('')\n if (seqMd5 !== storedMd5) {\n throw new CramMalformedError(\n `MD5 checksum reference mismatch for ref ${sliceHeader.parsedContent.refSeqId} pos ${start}..${end}. recorded MD5: ${storedMd5}, calculated MD5: ${seqMd5}`,\n )\n }\n }\n }\n\n // tracks the read position within the block. codec.decode() methods\n // advance the byte and bit positions in the cursor as they decode\n // data note that we are only decoding a single block here, the core\n // data block\n const coreDataBlock = await this.getCoreDataBlock()\n const cursors: Cursors = {\n lastAlignmentStart: isMappedSliceHeader(sliceHeader.parsedContent)\n ? sliceHeader.parsedContent.refSeqStart\n : 0,\n coreBlock: { bitPosition: 7, bytePosition: 0 },\n externalBlocks: {\n map: new Map(),\n getCursor(contentId: number) {\n let r = this.map.get(contentId)\n if (r === undefined) {\n r = { bitPosition: 7, bytePosition: 0 }\n this.map.set(contentId, r)\n }\n return r\n },\n },\n }\n\n const decodeDataSeries: DataSeriesDecoder = <\n T extends DataSeriesEncodingKey,\n >(\n dataSeriesName: T,\n ): DataTypeMapping[DataSeriesTypes[T]] => {\n const codec = compressionScheme.getCodecForDataSeries(dataSeriesName)\n if (!codec) {\n throw new CramMalformedError(\n `no codec defined for ${dataSeriesName} data series`,\n )\n }\n // console.log(dataSeriesName, Object.getPrototypeOf(codec))\n const decoded = codec.decode(\n this,\n coreDataBlock,\n blocksByContentId,\n cursors,\n )\n return decoded\n }\n const records: CramRecord[] = new Array(\n sliceHeader.parsedContent.numRecords,\n )\n for (let i = 0; i < records.length; i += 1) {\n try {\n const init = decodeRecord(\n this,\n decodeDataSeries,\n compressionScheme,\n sliceHeader,\n coreDataBlock,\n blocksByContentId,\n cursors,\n majorVersion,\n i,\n )\n records[i] = new CramRecord({\n ...init,\n uniqueId:\n sliceHeader.contentPosition +\n sliceHeader.parsedContent.recordCounter +\n i +\n 1,\n })\n } catch (e) {\n if (e instanceof CramBufferOverrunError) {\n console.warn(\n 'read attempted beyond end of buffer, file seems truncated.',\n )\n break\n } else {\n throw e\n }\n }\n }\n\n // interpret `recordsToNextFragment` attributes to make standard `mate`\n // objects Resolve mate pair cross-references between records in this slice\n for (let i = 0; i < records.length; i += 1) {\n const { mateRecordNumber } = records[i]!\n if (mateRecordNumber !== undefined && mateRecordNumber >= 0) {\n associateIntraSliceMate(\n records,\n i,\n records[i]!,\n records[mateRecordNumber]!,\n )\n }\n }\n\n return records\n }\n\n async getRecords(filterFunction: (r: CramRecord) => boolean) {\n // fetch the features if necessary, using the file-level feature cache\n const cacheKey = this.container.filePosition + this.containerPosition\n let recordsPromise = this.file.featureCache.get(cacheKey.toString())\n if (!recordsPromise) {\n recordsPromise = this._fetchRecords()\n this.file.featureCache.set(cacheKey.toString(), recordsPromise)\n }\n\n const unfiltered = await recordsPromise\n const records = unfiltered.filter(filterFunction)\n\n // if we can fetch reference sequence, add the reference sequence to the records\n if (records.length && this.file.fetchReferenceSequenceCallback) {\n const sliceHeader = await this.getHeader()\n if (\n isMappedSliceHeader(sliceHeader.parsedContent) &&\n (sliceHeader.parsedContent.refSeqId >= 0 || // single-ref slice\n sliceHeader.parsedContent.refSeqId === -2) // multi-ref slice\n ) {\n const singleRefId =\n sliceHeader.parsedContent.refSeqId >= 0\n ? sliceHeader.parsedContent.refSeqId\n : undefined\n const compressionScheme = await this.container.getCompressionScheme()\n if (compressionScheme === undefined) {\n throw new Error('compression scheme undefined')\n }\n const refRegions: Record<\n string,\n { id: number; start: number; end: number; seq: string | null }\n > = {}\n\n // iterate over the records to find the spans of the reference\n // sequences we need to fetch\n for (const record of records) {\n const seqId =\n singleRefId !== undefined ? singleRefId : record.sequenceId\n let refRegion = refRegions[seqId]\n if (!refRegion) {\n refRegion = {\n id: seqId,\n start: record.alignmentStart,\n end: Number.NEGATIVE_INFINITY,\n seq: null,\n }\n refRegions[seqId] = refRegion\n }\n\n const end =\n record.alignmentStart +\n (record.lengthOnRef || record.readLength) -\n 1\n if (end > refRegion.end) {\n refRegion.end = end\n }\n if (record.alignmentStart < refRegion.start) {\n refRegion.start = record.alignmentStart\n }\n }\n\n // fetch the `seq` for all of the ref regions\n await Promise.all(\n Object.values(refRegions).map(async refRegion => {\n if (\n refRegion.id !== -1 &&\n refRegion.start <= refRegion.end &&\n this.file.fetchReferenceSequenceCallback\n ) {\n refRegion.seq = await this.file.fetchReferenceSequenceCallback(\n refRegion.id,\n refRegion.start,\n refRegion.end,\n )\n }\n }),\n )\n\n // now decorate all the records with them\n for (const record of records) {\n const seqId =\n singleRefId !== undefined ? singleRefId : record.sequenceId\n const refRegion = refRegions[seqId]\n if (refRegion?.seq) {\n const seq = refRegion.seq\n record.addReferenceSequence(\n { ...refRegion, seq },\n compressionScheme,\n )\n }\n }\n }\n }\n\n return records\n }\n}\n\n// memoize several methods in the class for performance\n'getHeader getBlocks _getBlocksContentIdIndex'.split(' ').forEach(method => {\n tinyMemoize(CramSlice, method)\n})\n","import CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\nimport { DataType } from './dataSeriesTypes'\n\nexport interface DataTypeMapping {\n byte: number\n int: number\n long: number\n byteArray: Uint8Array\n}\n\nexport interface Cursor {\n bitPosition: 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7\n bytePosition: number\n}\n\nexport interface Cursors {\n lastAlignmentStart: number\n coreBlock: Cursor\n externalBlocks: {\n map: Map\n getCursor: (contentId: number) => Cursor\n }\n}\n\n// codec base class\nexport default abstract class CramCodec<\n TResult extends DataType = DataType,\n TParameters = unknown,\n> {\n public parameters: TParameters\n public dataType: DataType\n\n constructor(parameters: TParameters, dataType: TResult) {\n this.parameters = parameters\n this.dataType = dataType\n }\n\n abstract decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ): DataTypeMapping[TResult]\n}\n","import CramCodec, { Cursors } from './_base'\nimport { ByteArrayLengthEncoding, CramEncoding } from '../encoding'\nimport CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\nimport { DataType } from './dataSeriesTypes'\nimport { tinyMemoize } from '../util'\n\ntype CramCodecFactory = (\n encodingData: CramEncoding,\n dataType: TData | 'ignore',\n) => CramCodec\n\nexport default class ByteArrayStopCodec extends CramCodec<\n 'byteArray',\n ByteArrayLengthEncoding['parameters']\n> {\n private instantiateCodec: CramCodecFactory\n\n constructor(\n parameters: ByteArrayLengthEncoding['parameters'],\n dataType: 'byteArray',\n instantiateCodec: CramCodecFactory,\n ) {\n super(parameters, dataType)\n this.instantiateCodec = instantiateCodec\n }\n\n decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ) {\n const lengthCodec = this._getLengthCodec()\n const arrayLength = lengthCodec.decode(\n slice,\n coreDataBlock,\n blocksByContentId,\n cursors,\n )\n\n const dataCodec = this._getDataCodec()\n const data = new Uint8Array(arrayLength)\n for (let i = 0; i < arrayLength; i += 1) {\n data[i] = dataCodec.decode(\n slice,\n coreDataBlock,\n blocksByContentId,\n cursors,\n )\n }\n\n return data\n }\n\n // memoize\n _getLengthCodec() {\n const encodingParams = this.parameters.lengthsEncoding\n return this.instantiateCodec(encodingParams, 'int')\n }\n\n // memoize\n _getDataCodec() {\n const encodingParams = this.parameters.valuesEncoding\n return this.instantiateCodec(encodingParams, 'byte')\n }\n}\n\n'_getLengthCodec _getDataCodec'.split(' ').forEach(method => {\n tinyMemoize(ByteArrayStopCodec, method)\n})\n","import { CramUnimplementedError } from '../../errors'\n\nimport HuffmanIntCodec from './huffman'\nimport ExternalCodec from './external'\nimport ByteArrayStopCodec from './byteArrayStop'\nimport ByteArrayLengthCodec from './byteArrayLength'\nimport BetaCodec from './beta'\nimport GammaCodec from './gamma'\nimport SubexpCodec from './subexp'\nimport CramCodec from './_base'\nimport { CramEncoding } from '../encoding'\nimport { DataType } from './dataSeriesTypes'\n\nconst codecClasses = {\n 1: ExternalCodec,\n // 2: GolombCodec,\n 3: HuffmanIntCodec,\n 4: ByteArrayLengthCodec,\n 5: ByteArrayStopCodec,\n 6: BetaCodec,\n 7: SubexpCodec,\n // 8: GolombRiceCodec,\n 9: GammaCodec,\n}\n\nfunction getCodecClassWithId(id: number) {\n return (codecClasses as any)[id]\n}\n\nexport function instantiateCodec(\n encodingData: CramEncoding,\n dataType: DataType | 'ignore',\n): CramCodec {\n const CodecClass = getCodecClassWithId(\n dataType === 'ignore' ? 0 : encodingData.codecId,\n )\n if (!CodecClass) {\n throw new CramUnimplementedError(\n `no codec implemented for codec ID ${encodingData.codecId}`,\n )\n }\n\n return new CodecClass(encodingData.parameters, dataType, instantiateCodec)\n}\n","import { CramMalformedError, CramUnimplementedError } from '../../errors'\nimport CramCodec, { Cursor, Cursors } from './_base'\nimport { parseItf8 } from '../util'\nimport CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\nimport { CramBufferOverrunError } from './getBits'\nimport { ExternalCramEncoding } from '../encoding'\n\nexport default class ExternalCodec extends CramCodec<\n 'int' | 'byte',\n ExternalCramEncoding['parameters']\n> {\n private readonly _decodeData: (\n contentBlock: CramFileBlock,\n cursor: Cursor,\n ) => number\n\n constructor(\n parameters: ExternalCramEncoding['parameters'],\n dataType: 'int' | 'byte',\n ) {\n super(parameters, dataType)\n if (this.dataType === 'int') {\n this._decodeData = this._decodeInt\n } else if (this.dataType === 'byte') {\n this._decodeData = this._decodeByte\n } else {\n throw new CramUnimplementedError(\n `${this.dataType} decoding not yet implemented by EXTERNAL codec`,\n )\n }\n }\n\n decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ) {\n const { blockContentId } = this.parameters\n const contentBlock = blocksByContentId[blockContentId]\n if (!contentBlock) {\n throw new CramMalformedError(\n `no block found with content ID ${blockContentId}}`,\n )\n }\n const cursor = cursors.externalBlocks.getCursor(blockContentId)\n return this._decodeData(contentBlock, cursor)\n }\n\n _decodeInt(contentBlock: CramFileBlock, cursor: Cursor) {\n const [result, bytesRead] = parseItf8(\n contentBlock.content,\n cursor.bytePosition,\n )\n cursor.bytePosition = cursor.bytePosition + bytesRead\n return result\n }\n\n _decodeByte(contentBlock: CramFileBlock, cursor: Cursor) {\n if (cursor.bytePosition >= contentBlock.content.length) {\n throw new CramBufferOverrunError(\n 'attempted to read beyond end of block. this file seems truncated.',\n )\n }\n return contentBlock.content[cursor.bytePosition++]!\n }\n}\n","import { CramMalformedError } from '../../errors'\nimport CramCodec, { Cursor, Cursors } from './_base'\nimport { getBits } from './getBits'\nimport { HuffmanEncoding } from '../encoding'\n\nimport CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\n\nfunction numberOfSetBits(ii: number) {\n let i = (ii - (ii >> 1)) & 0x55555555\n i = (i & 0x33333333) + ((i >> 2) & 0x33333333)\n return (((i + (i >> 4)) & 0x0f0f0f0f) * 0x01010101) >> 24\n}\n\ninterface Code {\n bitLength: number\n value: number\n bitCode: number\n}\n\nexport default class HuffmanIntCodec extends CramCodec<\n 'byte' | 'int',\n HuffmanEncoding['parameters']\n> {\n private codes: Record = {}\n private codeBook: Record = {}\n private sortedCodes: Code[] = []\n private sortedValuesByBitCode: number[] = []\n private sortedBitCodes: number[] = []\n private sortedBitLengthsByBitCode: number[] = []\n private bitCodeToValue: number[] = []\n\n constructor(\n parameters: HuffmanEncoding['parameters'],\n dataType: 'byte' | 'int',\n ) {\n super(parameters, dataType)\n if (!['byte', 'int'].includes(this.dataType)) {\n throw new TypeError(\n `${this.dataType} decoding not yet implemented by HUFFMAN_INT codec`,\n )\n }\n\n this.buildCodeBook()\n this.buildCodes()\n this.buildCaches()\n\n // if this is a degenerate zero-length huffman code, special-case the\n // decoding\n if (this.sortedCodes[0]!.bitLength === 0) {\n this._decode = this._decodeZeroLengthCode\n }\n }\n\n buildCodeBook() {\n // parse the parameters together into a `codes` data structure\n let codes = new Array<{ symbol: number; bitLength: number }>(\n this.parameters.numCodes,\n )\n for (let i = 0; i < this.parameters.numCodes; i++) {\n codes[i] = {\n symbol: this.parameters.symbols[i]!,\n bitLength: this.parameters.bitLengths[i]!,\n }\n }\n // sort the codes by bit length and symbol value\n codes = codes.sort(\n (a, b) => a.bitLength - b.bitLength || a.symbol - b.symbol,\n )\n\n this.codeBook = {}\n codes.forEach(code => {\n if (!this.codeBook[code.bitLength]) {\n this.codeBook[code.bitLength] = []\n }\n this.codeBook[code.bitLength]!.push(code.symbol)\n })\n }\n\n buildCodes() {\n this.codes = {} /* new TreeMap(); */\n let codeLength = 0\n let codeValue = -1\n Object.entries(this.codeBook).forEach(([bitLength, symbols]) => {\n const bitLengthInt = Number.parseInt(bitLength, 10)\n symbols.forEach(symbol => {\n const code = {\n bitLength: bitLengthInt,\n value: symbol,\n bitCode: 0,\n }\n codeValue = codeValue + 1\n const delta = bitLengthInt - codeLength // new length?\n codeValue = codeValue << delta // pad with 0's\n code.bitCode = codeValue // calculated: huffman code\n codeLength = codeLength + delta // adjust current code length\n\n if (numberOfSetBits(codeValue) > bitLengthInt) {\n throw new CramMalformedError('Symbol out of range')\n }\n\n this.codes[symbol] = code\n })\n })\n }\n\n buildCaches() {\n this.sortedCodes = Object.values(this.codes).sort(\n (a, b) => a.bitLength - b.bitLength || a.bitCode - b.bitCode,\n )\n\n this.sortedValuesByBitCode = this.sortedCodes.map(c => c.value)\n this.sortedBitCodes = this.sortedCodes.map(c => c.bitCode)\n this.sortedBitLengthsByBitCode = this.sortedCodes.map(c => c.bitLength)\n const maxBitCode = Math.max(...this.sortedBitCodes)\n\n this.bitCodeToValue = new Array(maxBitCode + 1).fill(-1)\n for (let i = 0; i < this.sortedBitCodes.length; i += 1) {\n this.bitCodeToValue[this.sortedCodes[i]!.bitCode] = i\n }\n }\n\n decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ) {\n return this._decode(slice, coreDataBlock, cursors.coreBlock)\n }\n\n // _decodeNull() {\n // return -1\n // }\n\n // the special case for zero-length codes\n _decodeZeroLengthCode() {\n return this.sortedCodes[0]!.value\n }\n\n _decode(slice: CramSlice, coreDataBlock: CramFileBlock, coreCursor: Cursor) {\n const input = coreDataBlock.content\n\n let prevLen = 0\n let bits = 0\n for (let i = 0; i < this.sortedCodes.length; i += 1) {\n const length = this.sortedCodes[i]!.bitLength\n bits <<= length - prevLen\n bits |= getBits(input, coreCursor, length - prevLen)\n prevLen = length\n {\n const index = this.bitCodeToValue[bits]!\n if (index > -1 && this.sortedBitLengthsByBitCode[index] === length) {\n return this.sortedValuesByBitCode[index]!\n }\n\n for (\n let j = i;\n this.sortedCodes[j + 1]!.bitLength === length &&\n j < this.sortedCodes.length;\n j += 1\n ) {\n i += 1\n }\n }\n }\n throw new CramMalformedError('Huffman symbol not found.')\n }\n}\n","import { CramMalformedError } from '../../errors'\n\nimport CramCodec, { Cursor, Cursors } from './_base'\nimport CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\nimport { ByteArrayStopCramEncoding } from '../encoding'\nimport { CramBufferOverrunError } from './getBits'\n\nexport default class ByteArrayStopCodec extends CramCodec<\n 'byteArray',\n ByteArrayStopCramEncoding['parameters']\n> {\n decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ) {\n const { blockContentId } = this.parameters\n const contentBlock = blocksByContentId[blockContentId]\n if (!contentBlock) {\n throw new CramMalformedError(\n `no block found with content ID ${blockContentId}`,\n )\n }\n const cursor = cursors.externalBlocks.getCursor(blockContentId)\n return this._decodeByteArray(contentBlock, cursor)\n }\n\n _decodeByteArray(contentBlock: CramFileBlock, cursor: Cursor) {\n const dataBuffer = contentBlock.content\n const { stopByte } = this.parameters\n // scan to the next stop byte\n const startPosition = cursor.bytePosition\n let stopPosition = cursor.bytePosition\n while (\n dataBuffer[stopPosition] !== stopByte &&\n stopPosition < dataBuffer.length\n ) {\n if (stopPosition === dataBuffer.length) {\n throw new CramBufferOverrunError(\n 'byteArrayStop reading beyond length of data buffer?',\n )\n }\n stopPosition = stopPosition + 1\n }\n cursor.bytePosition = stopPosition + 1\n return dataBuffer.subarray(startPosition, stopPosition)\n }\n}\n","import { CramUnimplementedError } from '../../errors'\nimport CramCodec, { Cursors } from './_base'\nimport { getBits } from './getBits'\nimport CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\nimport { BetaEncoding } from '../encoding'\n\nexport default class BetaCodec extends CramCodec<\n 'int',\n BetaEncoding['parameters']\n> {\n constructor(parameters: BetaEncoding['parameters'], dataType: 'int') {\n super(parameters, dataType)\n if (this.dataType !== 'int') {\n throw new CramUnimplementedError(\n `${this.dataType} decoding not yet implemented by BETA codec`,\n )\n }\n }\n\n decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ) {\n const fromBits = getBits(\n coreDataBlock.content,\n cursors.coreBlock,\n this.parameters.length,\n )\n return fromBits - this.parameters.offset\n }\n}\n","import { CramUnimplementedError } from '../../errors'\nimport CramCodec, { Cursors } from './_base'\nimport { getBits } from './getBits'\nimport CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\nimport { SubexpEncoding } from '../encoding'\n\nexport default class SubexpCodec extends CramCodec<\n 'int',\n SubexpEncoding['parameters']\n> {\n constructor(parameters: SubexpEncoding['parameters'], dataType: 'int') {\n super(parameters, dataType)\n if (this.dataType !== 'int') {\n throw new CramUnimplementedError(\n `${this.dataType} decoding not yet implemented by SUBEXP codec`,\n )\n }\n }\n\n decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ) {\n let numLeadingOnes = 0\n while (getBits(coreDataBlock.content, cursors.coreBlock, 1)) {\n numLeadingOnes = numLeadingOnes + 1\n }\n\n let b: number\n let n: number\n if (numLeadingOnes === 0) {\n b = this.parameters.K\n n = getBits(coreDataBlock.content, cursors.coreBlock, b)\n } else {\n b = numLeadingOnes + this.parameters.K - 1\n const bits = getBits(coreDataBlock.content, cursors.coreBlock, b)\n n = (1 << b) | bits\n }\n\n return n - this.parameters.offset\n }\n}\n","import { CramUnimplementedError } from '../../errors'\nimport CramCodec, { Cursors } from './_base'\nimport { getBits } from './getBits'\nimport { GammaEncoding } from '../encoding'\nimport CramSlice from '../slice'\nimport { CramFileBlock } from '../file'\n\nexport default class GammaCodec extends CramCodec<\n 'int',\n GammaEncoding['parameters']\n> {\n constructor(parameters: GammaEncoding['parameters'], dataType: 'int') {\n super(parameters, dataType)\n if (this.dataType !== 'int') {\n throw new CramUnimplementedError(\n `${this.dataType} decoding not yet implemented by GAMMA codec`,\n )\n }\n }\n\n decode(\n slice: CramSlice,\n coreDataBlock: CramFileBlock,\n blocksByContentId: Record,\n cursors: Cursors,\n ) {\n let length = 1\n\n while (getBits(coreDataBlock.content, cursors.coreBlock, 1) === 0) {\n length = length + 1\n }\n\n const readBits = getBits(\n coreDataBlock.content,\n cursors.coreBlock,\n length - 1,\n )\n\n const value = readBits | (1 << (length - 1))\n return value - this.parameters.offset\n }\n}\n","import { instantiateCodec } from '../codecs'\nimport CramCodec from '../codecs/_base'\nimport { CramCompressionHeader } from '../sectionParsers'\nimport { CramEncoding } from '../encoding'\nimport { CramMalformedError } from '../../errors'\nimport {\n DataSeriesEncodingKey,\n DataSeriesEncodingMap,\n} from '../codecs/dataSeriesTypes'\n\n// the hardcoded data type to be decoded for each core\n// data field\nconst dataSeriesTypes = {\n BF: 'int',\n CF: 'int',\n RI: 'int',\n RL: 'int',\n AP: 'int',\n RG: 'int',\n MF: 'int',\n NS: 'int',\n NP: 'int',\n TS: 'int',\n NF: 'int',\n TC: 'byte',\n TN: 'int',\n FN: 'int',\n FC: 'byte',\n FP: 'int',\n BS: 'byte',\n IN: 'byteArray',\n SC: 'byteArray',\n DL: 'int',\n BA: 'byte',\n BB: 'byteArray',\n RS: 'int',\n PD: 'int',\n HC: 'int',\n MQ: 'int',\n RN: 'byteArray',\n QS: 'byte',\n QQ: 'byteArray',\n TL: 'int',\n // TM: 'ignore',\n // TV: 'ignore',\n} as const\n\nexport type DataSeriesTypes = typeof dataSeriesTypes\n\nfunction parseSubstitutionMatrix(byteArray: number[]) {\n const matrix: string[][] = new Array(5)\n for (let i = 0; i < 5; i += 1) {\n matrix[i] = new Array(4)\n }\n\n matrix[0]![(byteArray[0]! >> 6) & 3] = 'C'\n matrix[0]![(byteArray[0]! >> 4) & 3] = 'G'\n matrix[0]![(byteArray[0]! >> 2) & 3] = 'T'\n matrix[0]![(byteArray[0]! >> 0) & 3] = 'N'\n\n matrix[1]![(byteArray[1]! >> 6) & 3] = 'A'\n matrix[1]![(byteArray[1]! >> 4) & 3] = 'G'\n matrix[1]![(byteArray[1]! >> 2) & 3] = 'T'\n matrix[1]![(byteArray[1]! >> 0) & 3] = 'N'\n\n matrix[2]![(byteArray[2]! >> 6) & 3] = 'A'\n matrix[2]![(byteArray[2]! >> 4) & 3] = 'C'\n matrix[2]![(byteArray[2]! >> 2) & 3] = 'T'\n matrix[2]![(byteArray[2]! >> 0) & 3] = 'N'\n\n matrix[3]![(byteArray[3]! >> 6) & 3] = 'A'\n matrix[3]![(byteArray[3]! >> 4) & 3] = 'C'\n matrix[3]![(byteArray[3]! >> 2) & 3] = 'G'\n matrix[3]![(byteArray[3]! >> 0) & 3] = 'N'\n\n matrix[4]![(byteArray[4]! >> 6) & 3] = 'A'\n matrix[4]![(byteArray[4]! >> 4) & 3] = 'C'\n matrix[4]![(byteArray[4]! >> 2) & 3] = 'G'\n matrix[4]![(byteArray[4]! >> 0) & 3] = 'T'\n\n return matrix\n}\n\ntype DataSeriesCache = {\n [K in DataSeriesEncodingKey]?: CramCodec\n}\n\nexport default class CramContainerCompressionScheme {\n public readNamesIncluded: boolean\n public APdelta: boolean\n public referenceRequired: boolean\n public tagIdsDictionary: Record\n public substitutionMatrix: string[][]\n public dataSeriesCodecCache: DataSeriesCache = {}\n public tagCodecCache: Record = {}\n public tagEncoding: Record = {}\n public dataSeriesEncoding: DataSeriesEncodingMap\n\n constructor(content: CramCompressionHeader) {\n // interpret some of the preservation map tags for convenient use\n this.readNamesIncluded = content.preservation.RN\n this.APdelta = content.preservation.AP\n this.referenceRequired = !!content.preservation.RR\n this.tagIdsDictionary = content.preservation.TD\n this.substitutionMatrix = parseSubstitutionMatrix(content.preservation.SM)\n this.dataSeriesEncoding = content.dataSeriesEncoding\n this.tagEncoding = content.tagEncoding\n }\n\n /**\n * @param {string} tagName three-character tag name\n * @private\n */\n getCodecForTag(tagName: string): CramCodec {\n const test = this.tagCodecCache[tagName]\n if (!test) {\n const encodingData = this.tagEncoding[tagName]\n if (!encodingData) {\n throw new Error('Error, no tag encoding')\n }\n const ret = instantiateCodec(\n encodingData,\n 'byteArray', // all tags are byte array data\n )\n this.tagCodecCache[tagName] = ret\n return ret\n } else {\n return test\n }\n }\n\n /**\n *\n * @param {number} tagListId ID of the tag list to fetch from the tag dictionary\n * @private\n */\n getTagNames(tagListId: number) {\n return this.tagIdsDictionary[tagListId]\n }\n\n getCodecForDataSeries(\n dataSeriesName: TDataSeries,\n ): CramCodec | undefined {\n let r: CramCodec | undefined =\n this.dataSeriesCodecCache[dataSeriesName]\n if (r === undefined) {\n const encodingData = this.dataSeriesEncoding[dataSeriesName]\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n if (encodingData) {\n const dataType = dataSeriesTypes[dataSeriesName]\n // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition\n if (!dataType) {\n throw new CramMalformedError(\n `data series name ${dataSeriesName} not defined in file compression header`,\n )\n }\n r = instantiateCodec(encodingData, dataType)\n // didn't find a way to make TS understand this\n this.dataSeriesCodecCache[dataSeriesName] = r as CramCodec\n }\n }\n return r\n }\n\n toJSON() {\n const data: any = {}\n Object.keys(this).forEach(k => {\n if (k.endsWith('Cache')) {\n return\n }\n data[k] = (this as any)[k]\n })\n return data\n }\n}\n","import { Buffer } from 'buffer'\nimport { CramMalformedError } from '../../errors'\n// locals\nimport { itf8Size, parseItem, tinyMemoize } from '../util'\nimport CramSlice from '../slice'\nimport CramContainerCompressionScheme from './compressionScheme'\nimport CramFile from '../file'\nimport { getSectionParsers } from '../sectionParsers'\n\nexport default class CramContainer {\n constructor(\n public file: CramFile,\n public filePosition: number,\n ) {}\n\n getHeader() {\n return this._readContainerHeader(this.filePosition)\n }\n\n async getCompressionHeaderBlock() {\n const containerHeader = await this.getHeader()\n\n // if there are no records in the container, there will be no compression\n // header\n if (!containerHeader?.numRecords) {\n return null\n }\n const { majorVersion } = await this.file.getDefinition()\n const sectionParsers = getSectionParsers(majorVersion)\n\n const block = await this.getFirstBlock()\n if (block === undefined) {\n return undefined\n }\n if (block.contentType !== 'COMPRESSION_HEADER') {\n throw new CramMalformedError(\n `invalid content type ${block.contentType} in compression header block`,\n )\n }\n\n const content = parseItem(\n block.content,\n sectionParsers.cramCompressionHeader.parser,\n 0,\n block.contentPosition,\n )\n return {\n ...block,\n parsedContent: content,\n }\n }\n\n async getFirstBlock() {\n const containerHeader = await this.getHeader()\n if (!containerHeader) {\n return undefined\n }\n return this.file.readBlock(containerHeader._endPosition)\n }\n\n // parses the compression header data into a CramContainerCompressionScheme\n // object\n async getCompressionScheme() {\n const header = await this.getCompressionHeaderBlock()\n if (!header) {\n return undefined\n }\n\n return new CramContainerCompressionScheme(header.parsedContent)\n }\n\n getSlice(slicePosition: number, sliceSize: number) {\n // note: slicePosition is relative to the end of the container header\n // TODO: perhaps we should cache slices?\n return new CramSlice(this, slicePosition, sliceSize)\n }\n\n async _readContainerHeader(position: number) {\n const { majorVersion } = await this.file.getDefinition()\n const sectionParsers = getSectionParsers(majorVersion)\n const { cramContainerHeader1, cramContainerHeader2 } = sectionParsers\n const { size: fileSize } = await this.file.stat()\n\n if (position >= fileSize) {\n console.warn(`pos:${position}>=fileSize:${fileSize} in cram container`)\n return undefined\n }\n\n // parse the container header. do it in 2 pieces because you cannot tell\n // how much to buffer until you read numLandmarks\n const bytes1 = Buffer.allocUnsafe(cramContainerHeader1.maxLength)\n await this.file.read(bytes1, 0, cramContainerHeader1.maxLength, position)\n const header1 = parseItem(bytes1, cramContainerHeader1.parser)\n const numLandmarksSize = itf8Size(header1.numLandmarks)\n if (position + header1.length >= fileSize) {\n // header indicates container goes beyond fileSize\n console.warn(\n `container at ${position} is beyond fileSize:${fileSize}, skipping`,\n )\n return undefined\n }\n const bytes2 = Buffer.allocUnsafe(\n cramContainerHeader2.maxLength(header1.numLandmarks),\n )\n await this.file.read(\n bytes2,\n 0,\n cramContainerHeader2.maxLength(header1.numLandmarks),\n position + header1._size - numLandmarksSize,\n )\n const header2 = parseItem(bytes2, cramContainerHeader2.parser)\n\n if (this.file.validateChecksums && header2.crc32 !== undefined) {\n await this.file.checkCrc32(\n position,\n header1._size + header2._size - numLandmarksSize - 4,\n header2.crc32,\n `container header beginning at position ${position}`,\n )\n }\n\n const completeHeader = Object.assign(header1, header2, {\n _size: header1._size + header2._size - numLandmarksSize,\n _endPosition: header1._size + header2._size - numLandmarksSize + position,\n })\n\n return completeHeader\n }\n}\n\n'getHeader getCompressionHeaderBlock getCompressionScheme'\n .split(' ')\n .forEach(method => {\n tinyMemoize(CramContainer, method)\n })\n","import { Filehandle } from '../cramFile/filehandle'\nimport { LocalFile, RemoteFile } from 'generic-filehandle'\n\nfunction open(\n maybeUrl?: string,\n maybePath?: string,\n maybeFilehandle?: Filehandle,\n): Filehandle {\n if (maybeFilehandle) {\n return maybeFilehandle\n }\n if (maybeUrl) {\n return new RemoteFile(maybeUrl)\n }\n if (maybePath) {\n return new LocalFile(maybePath)\n }\n throw new Error('no url, path, or filehandle provided, cannot open')\n}\n\nexport { open }\n\nexport { LocalFile, RemoteFile } from 'generic-filehandle'\n","export function parseHeaderText(text: string) {\n const lines = text.split(/\\r?\\n/)\n const data: {\n tag: string\n data: {\n tag: string\n value: string\n }[]\n }[] = []\n for (const line of lines) {\n const [tag, ...fields] = line.split(/\\t/)\n if (tag) {\n data.push({\n tag: tag.slice(1),\n data: fields.map(f => {\n const r = f.indexOf(':')\n return r !== -1\n ? {\n tag: f.slice(0, r),\n value: f.slice(r + 1),\n }\n : // @CO lines are not comma separated.\n // See \"samtools view -H c2\\#pad.3.0.cram\"\n // so, just store value tag and value itself\n {\n tag: f,\n value: '',\n }\n }),\n })\n }\n }\n return data\n}\n","import { Buffer } from 'buffer'\nimport crc32 from 'crc/crc32'\nimport QuickLRU from 'quick-lru'\nimport htscodecs from '@jkbonfield/htscodecs'\nimport bzip2 from 'bzip2'\nimport { XzReadableStream } from 'xz-decompress'\nimport { CramMalformedError, CramUnimplementedError } from '../errors'\n// locals\nimport { unzip } from '../unzip'\nimport ransuncompress from '../rans'\nimport {\n BlockHeader,\n CompressionMethod,\n cramFileDefinition,\n getSectionParsers,\n} from './sectionParsers'\nimport CramContainer from './container'\nimport CramRecord from './record'\nimport { open } from '../io'\nimport { parseItem, tinyMemoize } from './util'\nimport { parseHeaderText } from '../sam'\nimport { Filehandle } from './filehandle'\n\nfunction bufferToStream(buf: Buffer) {\n return new ReadableStream({\n start(controller) {\n controller.enqueue(buf)\n controller.close()\n },\n })\n}\n\n// source: https://abdulapopoola.com/2019/01/20/check-endianness-with-javascript/\nfunction getEndianness() {\n const uInt32 = new Uint32Array([0x11223344])\n const uInt8 = new Uint8Array(uInt32.buffer)\n\n if (uInt8[0] === 0x44) {\n return 0 // little-endian\n } else if (uInt8[0] === 0x11) {\n return 1 // big-endian\n } else {\n return 2 // mixed-endian?\n }\n}\n\nexport interface CramFileSource {\n filehandle?: Filehandle\n url?: string\n path?: string\n}\n\nexport type SeqFetch = (\n seqId: number,\n start: number,\n end: number,\n) => Promise\n\nexport type CramFileArgs = CramFileSource & {\n checkSequenceMD5?: boolean\n cacheSize?: number\n seqFetch?: SeqFetch\n}\n\nexport type CramFileBlock = BlockHeader & {\n _endPosition: number\n contentPosition: number\n _size: number\n content: Buffer\n crc32?: number\n}\n\nexport default class CramFile {\n private file: Filehandle\n public validateChecksums: boolean\n public fetchReferenceSequenceCallback?: SeqFetch\n public options: {\n checkSequenceMD5?: boolean\n cacheSize: number\n }\n public featureCache: QuickLRU>\n private header: string | undefined\n\n constructor(args: CramFileArgs) {\n this.file = open(args.url, args.path, args.filehandle)\n this.validateChecksums = true\n this.fetchReferenceSequenceCallback = args.seqFetch\n this.options = {\n checkSequenceMD5: args.checkSequenceMD5,\n cacheSize: args.cacheSize ?? 20000,\n }\n\n // cache of features in a slice, keyed by the slice offset. caches all of\n // the features in a slice, or none. the cache is actually used by the\n // slice object, it's just kept here at the level of the file\n this.featureCache = new QuickLRU({\n maxSize: this.options.cacheSize,\n })\n if (getEndianness() > 0) {\n throw new Error('Detected big-endian machine, may be unable to run')\n }\n }\n\n // can just read this object like a filehandle\n read(buffer: Buffer, offset: number, length: number, position: number) {\n return this.file.read(buffer, offset, length, position)\n }\n\n // can just stat this object like a filehandle\n stat() {\n return this.file.stat()\n }\n\n // memoized\n async getDefinition() {\n const { maxLength, parser } = cramFileDefinition()\n const headbytes = Buffer.allocUnsafe(maxLength)\n await this.file.read(headbytes, 0, maxLength, 0)\n const definition = parser(headbytes).value\n if (definition.majorVersion !== 2 && definition.majorVersion !== 3) {\n throw new CramUnimplementedError(\n `CRAM version ${definition.majorVersion} not supported`,\n )\n }\n return definition\n }\n\n // memoize\n async getSamHeader() {\n const firstContainer = await this.getContainerById(0)\n if (!firstContainer) {\n throw new CramMalformedError('file contains no containers')\n }\n\n const firstBlock = await firstContainer.getFirstBlock()\n if (firstBlock === undefined) {\n return parseHeaderText('')\n }\n const content = firstBlock.content\n // find the end of the trailing zeros in the header text\n const headerLength = content.readInt32LE(0)\n const textStart = 4\n // let textEnd = content.length - 1\n // while (textEnd >= textStart && !content[textEnd]) textEnd -= 1\n // trim off the trailing zeros\n const text = content.toString('utf8', textStart, textStart + headerLength)\n this.header = text\n return parseHeaderText(text)\n }\n\n async getHeaderText() {\n await this.getSamHeader()\n return this.header\n }\n\n async getContainerById(containerNumber: number) {\n const { majorVersion } = await this.getDefinition()\n const sectionParsers = getSectionParsers(majorVersion)\n let position = sectionParsers.cramFileDefinition.maxLength\n const { size: fileSize } = await this.file.stat()\n const { cramContainerHeader1 } = sectionParsers\n\n // skip with a series of reads to the proper container\n let currentContainer: CramContainer | undefined\n for (let i = 0; i <= containerNumber; i++) {\n // if we are about to go off the end of the file\n // and have not found that container, it does not exist\n if (position + cramContainerHeader1.maxLength + 8 >= fileSize) {\n return undefined\n }\n\n currentContainer = this.getContainerAtPosition(position)\n const currentHeader = await currentContainer.getHeader()\n if (!currentHeader) {\n throw new CramMalformedError(\n `container ${containerNumber} not found in file`,\n )\n }\n // if this is the first container, read all the blocks in the container\n // to determine its length, because we cannot trust the container\n // header's given length due to a bug somewhere in htslib\n if (i === 0) {\n position = currentHeader._endPosition\n for (let j = 0; j < currentHeader.numBlocks; j++) {\n const block = await this.readBlock(position)\n if (block === undefined) {\n return undefined\n }\n position = block._endPosition\n }\n } else {\n // otherwise, just traverse to the next container using the container's length\n position += currentHeader._size + currentHeader.length\n }\n }\n\n return currentContainer\n }\n\n async checkCrc32(\n position: number,\n length: number,\n recordedCrc32: number,\n description: string,\n ) {\n const b = Buffer.allocUnsafe(length)\n await this.file.read(b, 0, length, position)\n const calculatedCrc32 = crc32.unsigned(b)\n if (calculatedCrc32 !== recordedCrc32) {\n throw new CramMalformedError(\n `crc mismatch in ${description}: recorded CRC32 = ${recordedCrc32}, but calculated CRC32 = ${calculatedCrc32}`,\n )\n }\n }\n\n /**\n * @returns {Promise[number]} the number of containers in the file\n */\n async containerCount(): Promise {\n const { majorVersion } = await this.getDefinition()\n const sectionParsers = getSectionParsers(majorVersion)\n const { size: fileSize } = await this.file.stat()\n const { cramContainerHeader1 } = sectionParsers\n\n let containerCount = 0\n let position = sectionParsers.cramFileDefinition.maxLength\n while (position + cramContainerHeader1.maxLength + 8 < fileSize) {\n const currentHeader =\n await this.getContainerAtPosition(position).getHeader()\n if (!currentHeader) {\n break\n }\n // if this is the first container, read all the blocks in the\n // container, because we cannot trust the container\n // header's given length due to a bug somewhere in htslib\n if (containerCount === 0) {\n position = currentHeader._endPosition\n for (let j = 0; j < currentHeader.numBlocks; j++) {\n const block = await this.readBlock(position)\n if (block === undefined) {\n return undefined\n }\n position = block._endPosition\n }\n } else {\n // otherwise, just traverse to the next container using the container's length\n position += currentHeader._size + currentHeader.length\n }\n containerCount += 1\n }\n\n return containerCount\n }\n\n getContainerAtPosition(position: number) {\n return new CramContainer(this, position)\n }\n\n async readBlockHeader(position: number) {\n const { majorVersion } = await this.getDefinition()\n const sectionParsers = getSectionParsers(majorVersion)\n const { cramBlockHeader } = sectionParsers\n const { size: fileSize } = await this.file.stat()\n\n if (position + cramBlockHeader.maxLength >= fileSize) {\n return undefined\n }\n\n const buffer = Buffer.allocUnsafe(cramBlockHeader.maxLength)\n await this.file.read(buffer, 0, cramBlockHeader.maxLength, position)\n return parseItem(buffer, cramBlockHeader.parser, 0, position)\n }\n\n async _parseSection(\n section: {\n maxLength: number\n parser: (buffer: Buffer, offset: number) => { offset: number; value: T }\n },\n position: number,\n size = section.maxLength,\n preReadBuffer?: Buffer,\n ) {\n let buffer: Buffer\n if (preReadBuffer) {\n buffer = preReadBuffer\n } else {\n const { size: fileSize } = await this.file.stat()\n if (position + size >= fileSize) {\n return undefined\n }\n buffer = Buffer.allocUnsafe(size)\n await this.file.read(buffer, 0, size, position)\n }\n const data = parseItem(buffer, section.parser, 0, position)\n if (data._size !== size) {\n throw new CramMalformedError(\n `section read error: requested size ${size} does not equal parsed size ${data._size}`,\n )\n }\n return data\n }\n\n async _uncompress(\n compressionMethod: CompressionMethod,\n inputBuffer: Buffer,\n outputBuffer: Buffer,\n ) {\n if (compressionMethod === 'gzip') {\n const result = unzip(inputBuffer)\n result.copy(outputBuffer)\n } else if (compressionMethod === 'bzip2') {\n const bits = bzip2.array(inputBuffer)\n let size = bzip2.header(bits)\n let j = 0\n let chunk: Uint8Array | -1\n do {\n chunk = bzip2.decompress(bits, size)\n if (chunk !== -1) {\n Buffer.from(chunk).copy(outputBuffer, j)\n j += chunk.length\n size -= chunk.length\n }\n } while (chunk !== -1)\n } else if (compressionMethod === 'lzma') {\n const decompressedResponse = new Response(\n new XzReadableStream(bufferToStream(inputBuffer)),\n )\n const ret = Buffer.from(await decompressedResponse.arrayBuffer())\n ret.copy(outputBuffer)\n } else if (compressionMethod === 'rans') {\n ransuncompress(inputBuffer, outputBuffer)\n // htscodecs r4x8 is slower, but compatible.\n // htscodecs.r4x8_uncompress(inputBuffer, outputBuffer);\n } else if (compressionMethod === 'rans4x16') {\n htscodecs.r4x16_uncompress(inputBuffer, outputBuffer)\n } else if (compressionMethod === 'arith') {\n htscodecs.arith_uncompress(inputBuffer, outputBuffer)\n } else if (compressionMethod === 'fqzcomp') {\n htscodecs.fqzcomp_uncompress(inputBuffer, outputBuffer)\n } else if (compressionMethod === 'tok3') {\n htscodecs.tok3_uncompress(inputBuffer, outputBuffer)\n } else {\n throw new CramUnimplementedError(\n `${compressionMethod} decompression not yet implemented`,\n )\n }\n }\n\n async readBlock(position: number) {\n const { majorVersion } = await this.getDefinition()\n const sectionParsers = getSectionParsers(majorVersion)\n const blockHeader = await this.readBlockHeader(position)\n if (blockHeader === undefined) {\n return undefined\n }\n const blockContentPosition = blockHeader._endPosition\n\n const uncompressedData = Buffer.allocUnsafe(blockHeader.uncompressedSize)\n\n const block: CramFileBlock = {\n ...blockHeader,\n _endPosition: blockContentPosition,\n contentPosition: blockContentPosition,\n content: uncompressedData,\n }\n\n if (blockHeader.compressionMethod !== 'raw') {\n const compressedData = Buffer.allocUnsafe(blockHeader.compressedSize)\n await this.read(\n compressedData,\n 0,\n blockHeader.compressedSize,\n blockContentPosition,\n )\n\n await this._uncompress(\n blockHeader.compressionMethod,\n compressedData,\n uncompressedData,\n )\n } else {\n await this.read(\n uncompressedData,\n 0,\n blockHeader.uncompressedSize,\n blockContentPosition,\n )\n }\n\n if (majorVersion >= 3) {\n // parse the crc32\n const crc = await this._parseSection(\n sectionParsers.cramBlockCrc32,\n blockContentPosition + blockHeader.compressedSize,\n )\n if (crc === undefined) {\n return undefined\n }\n block.crc32 = crc.crc32\n\n // check the block data crc32\n if (this.validateChecksums) {\n await this.checkCrc32(\n position,\n blockHeader._size + blockHeader.compressedSize,\n crc.crc32,\n 'block data',\n )\n }\n\n // make the endposition and size reflect the whole block\n block._endPosition = crc._endPosition\n block._size =\n block.compressedSize + sectionParsers.cramBlockCrc32.maxLength\n } else {\n block._endPosition = blockContentPosition + block.compressedSize\n block._size = block.compressedSize\n }\n\n return block\n }\n}\n\n'getDefinition getSectionParsers getSamHeader'.split(' ').forEach(method => {\n tinyMemoize(CramFile, method)\n})\n","// @ts-nocheck\nimport { CramMalformedError } from '../errors'\n\nimport { TF_SHIFT } from './constants'\nimport Decoding from './decoding'\n\nexport default function uncompress(\n /* ByteBuffer */ input,\n /* Decoding.AriDecoder */ D,\n /* Decoding.Symbol[] */ syms,\n /* ByteBuffer */ out,\n) {\n let rans0 = input.getInt()\n let rans1 = input.getInt()\n let rans2 = input.getInt()\n let rans3 = input.getInt()\n\n const /* int */ outputSize = out.remaining()\n const /* int */ outputEnd = outputSize & ~3\n for (let i = 0; i < outputEnd; i += 4) {\n const /* byte */ c0 = D.R[Decoding.get(rans0, TF_SHIFT)]\n const /* byte */ c1 = D.R[Decoding.get(rans1, TF_SHIFT)]\n const /* byte */ c2 = D.R[Decoding.get(rans2, TF_SHIFT)]\n const /* byte */ c3 = D.R[Decoding.get(rans3, TF_SHIFT)]\n\n out.putAt(i, c0)\n out.putAt(i + 1, c1)\n out.putAt(i + 2, c2)\n out.putAt(i + 3, c3)\n\n rans0 = Decoding.advanceSymbolStep(rans0, syms[0xff & c0], TF_SHIFT)\n rans1 = Decoding.advanceSymbolStep(rans1, syms[0xff & c1], TF_SHIFT)\n rans2 = Decoding.advanceSymbolStep(rans2, syms[0xff & c2], TF_SHIFT)\n rans3 = Decoding.advanceSymbolStep(rans3, syms[0xff & c3], TF_SHIFT)\n\n rans0 = Decoding.renormalize(rans0, input)\n rans1 = Decoding.renormalize(rans1, input)\n rans2 = Decoding.renormalize(rans2, input)\n rans3 = Decoding.renormalize(rans3, input)\n }\n\n out.setPosition(outputEnd)\n let /* byte */ c: number\n switch (outputSize & 3) {\n case 0:\n break\n case 1:\n c = D.R[Decoding.get(rans0, TF_SHIFT)]\n Decoding.advanceSymbol(rans0, input, syms[0xff & c], TF_SHIFT)\n out.put(c)\n break\n\n case 2:\n c = D.R[Decoding.get(rans0, TF_SHIFT)]\n Decoding.advanceSymbol(rans0, input, syms[0xff & c], TF_SHIFT)\n out.put(c)\n\n c = D.R[Decoding.get(rans1, TF_SHIFT)]\n Decoding.advanceSymbol(rans1, input, syms[0xff & c], TF_SHIFT)\n out.put(c)\n break\n\n case 3:\n c = D.R[Decoding.get(rans0, TF_SHIFT)]\n Decoding.advanceSymbol(rans0, input, syms[0xff & c], TF_SHIFT)\n out.put(c)\n\n c = D.R[Decoding.get(rans1, TF_SHIFT)]\n Decoding.advanceSymbol(rans1, input, syms[0xff & c], TF_SHIFT)\n out.put(c)\n\n c = D.R[Decoding.get(rans2, TF_SHIFT)]\n Decoding.advanceSymbol(rans2, input, syms[0xff & c], TF_SHIFT)\n out.put(c)\n break\n\n default:\n throw new CramMalformedError(\n 'invalid output size encountered during rANS decoding',\n )\n }\n\n out.setPosition(0)\n}\n","// @ts-nocheck\nimport { TF_SHIFT } from './constants'\nimport Decoding from './decoding'\n\nexport default function uncompress(\n /* ByteBuffer */ input,\n /* ByteBuffer */ output,\n /* Decoding.AriDecoder[] */ D,\n /* Decoding.Symbol[][] */ syms,\n) {\n const /* int */ outputSize = output.remaining()\n let rans0 = input.getInt()\n let rans1 = input.getInt()\n let rans2 = input.getInt()\n let rans7 = input.getInt()\n\n const /* int */ isz4 = outputSize >> 2\n let /* int */ i0 = 0\n let /* int */ i1 = isz4\n let /* int */ i2 = 2 * isz4\n let /* int */ i7 = 3 * isz4\n let /* int */ l0 = 0\n let /* int */ l1 = 0\n let /* int */ l2 = 0\n let /* int */ l7 = 0\n for (; i0 < isz4; i0 += 1, i1 += 1, i2 += 1, i7 += 1) {\n const /* int */ c0 = 0xff & D[l0].R[Decoding.get(rans0, TF_SHIFT)]\n const /* int */ c1 = 0xff & D[l1].R[Decoding.get(rans1, TF_SHIFT)]\n const /* int */ c2 = 0xff & D[l2].R[Decoding.get(rans2, TF_SHIFT)]\n const /* int */ c7 = 0xff & D[l7].R[Decoding.get(rans7, TF_SHIFT)]\n\n output.putAt(i0, c0)\n output.putAt(i1, c1)\n output.putAt(i2, c2)\n output.putAt(i7, c7)\n\n rans0 = Decoding.advanceSymbolStep(rans0, syms[l0][c0], TF_SHIFT)\n rans1 = Decoding.advanceSymbolStep(rans1, syms[l1][c1], TF_SHIFT)\n rans2 = Decoding.advanceSymbolStep(rans2, syms[l2][c2], TF_SHIFT)\n rans7 = Decoding.advanceSymbolStep(rans7, syms[l7][c7], TF_SHIFT)\n\n rans0 = Decoding.renormalize(rans0, input)\n rans1 = Decoding.renormalize(rans1, input)\n rans2 = Decoding.renormalize(rans2, input)\n rans7 = Decoding.renormalize(rans7, input)\n\n l0 = c0\n l1 = c1\n l2 = c2\n l7 = c7\n }\n\n // Remainder\n for (; i7 < outputSize; i7 += 1) {\n const /* int */ c7 = 0xff & D[l7].R[Decoding.get(rans7, TF_SHIFT)]\n output.putAt(i7, c7)\n rans7 = Decoding.advanceSymbol(rans7, input, syms[l7][c7], TF_SHIFT)\n l7 = c7\n }\n}\n","import { unzip } from './unzip'\nimport { open } from './io'\nimport { CramMalformedError } from './errors'\nimport { CramFileSource } from './cramFile/file'\nimport { Filehandle } from './cramFile/filehandle'\n\nconst BAI_MAGIC = 21_578_050 // BAI\\1\n\nexport interface Slice {\n start: number\n span: number\n containerStart: number\n sliceStart: number\n sliceBytes: number\n}\n\ntype ParsedIndex = Record\n\nfunction addRecordToIndex(index: ParsedIndex, record: number[]) {\n const [seqId, start, span, containerStart, sliceStart, sliceBytes] = record\n\n const s = seqId!\n if (!index[s]) {\n index[s] = []\n }\n\n index[s].push({\n start: start!,\n span: span!,\n containerStart: containerStart!,\n sliceStart: sliceStart!,\n sliceBytes: sliceBytes!,\n })\n}\n\nfunction maybeUnzip(data: Buffer) {\n if (data[0] === 31 && data[1] === 139) {\n return unzip(data)\n }\n return data\n}\n\nexport default class CraiIndex {\n // A CRAM index (.crai) is a gzipped tab delimited file containing the\n // following columns:\n //\n // 1. Sequence id\n // 2. Alignment start\n // 3. Alignment span\n // 4. Container start byte position in the file\n // 5. Slice start byte position in the container data (‘blocks’)\n // 6. Slice size in bytes\n // Each line represents a slice in the CRAM file. Please note that all slices must be listed in index file.\n private parseIndexP?: Promise\n\n private filehandle: Filehandle\n\n /**\n *\n * @param {object} args\n * @param {string} [args.path]\n * @param {string} [args.url]\n * @param {FileHandle} [args.filehandle]\n */\n constructor(args: CramFileSource) {\n this.filehandle = open(args.url, args.path, args.filehandle)\n }\n\n async parseIndex() {\n const index: ParsedIndex = {}\n const uncompressedBuffer = maybeUnzip(await this.filehandle.readFile())\n if (\n uncompressedBuffer.length > 4 &&\n uncompressedBuffer.readUInt32LE(0) === BAI_MAGIC\n ) {\n throw new CramMalformedError(\n 'invalid .crai index file. note: file appears to be a .bai index. this is technically legal but please open a github issue if you need support',\n )\n }\n // interpret the text as regular ascii, since it is\n // supposed to be only digits and whitespace characters\n // this is written in a deliberately low-level fashion for performance,\n // because some .crai files can be pretty large.\n let currentRecord: number[] = []\n let currentString = ''\n for (const charCode of uncompressedBuffer) {\n if (\n (charCode >= 48 && charCode <= 57) /* 0-9 */ ||\n (!currentString && charCode === 45) /* leading - */\n ) {\n currentString += String.fromCharCode(charCode)\n } else if (charCode === 9 /* \\t */) {\n currentRecord.push(Number.parseInt(currentString, 10))\n currentString = ''\n } else if (charCode === 10 /* \\n */) {\n currentRecord.push(Number.parseInt(currentString, 10))\n currentString = ''\n addRecordToIndex(index, currentRecord)\n currentRecord = []\n } else if (charCode !== 13 /* \\r */ && charCode !== 32 /* space */) {\n // if there are other characters in the file besides\n // space and \\r, something is wrong.\n throw new CramMalformedError('invalid .crai index file')\n }\n }\n\n // if the file ends without a \\n, we need to flush our buffers\n if (currentString) {\n currentRecord.push(Number.parseInt(currentString, 10))\n }\n if (currentRecord.length === 6) {\n addRecordToIndex(index, currentRecord)\n }\n\n // sort each of them by start\n Object.entries(index).forEach(([seqId, ent]) => {\n const e2 = ent!\n index[seqId] = e2.sort((a, b) => a.start - b.start || a.span - b.span)\n })\n return index\n }\n\n getIndex() {\n if (!this.parseIndexP) {\n this.parseIndexP = this.parseIndex().catch((e: unknown) => {\n this.parseIndexP = undefined\n throw e\n })\n }\n return this.parseIndexP\n }\n\n /**\n * @param {number} seqId\n * @returns {Promise} true if the index contains entries for\n * the given reference sequence ID, false otherwise\n */\n async hasDataForReferenceSequence(seqId: number) {\n return !!(await this.getIndex())[seqId]\n }\n\n /**\n * fetch index entries for the given range\n *\n * @param {number} seqId\n * @param {number} queryStart\n * @param {number} queryEnd\n *\n * @returns {Promise} promise for\n * an array of objects of the form\n * `{start, span, containerStart, sliceStart, sliceBytes }`\n */\n async getEntriesForRange(\n seqId: number,\n queryStart: number,\n queryEnd: number,\n ): Promise {\n const seqEntries = (await this.getIndex())[seqId]\n if (!seqEntries) {\n return []\n }\n\n const compare = (entry: Slice) => {\n const entryStart = entry.start\n const entryEnd = entry.start + entry.span\n if (entryStart > queryEnd) {\n return -1\n } // entry is ahead of query\n if (entryEnd <= queryStart) {\n return 1\n } // entry is behind query\n return 0 // entry overlaps query\n }\n const bins = [] as Slice[]\n for (const entry of seqEntries) {\n if (compare(entry) === 0) {\n bins.push(entry)\n }\n }\n return bins\n }\n}\n","import { CramUnimplementedError } from './errors'\nimport CramFile from './cramFile'\nimport CramRecord from './cramFile/record'\nimport { SeqFetch } from './cramFile/file'\nimport { Filehandle } from './cramFile/filehandle'\nimport { Slice } from './craiIndex'\n\nexport interface CramFileSource {\n cramFilehandle?: Filehandle\n cramUrl?: string\n cramPath?: string\n}\n\nexport interface CramIndexLike {\n getEntriesForRange: (\n seqId: number,\n start: number,\n end: number,\n ) => Promise\n hasDataForReferenceSequence: (seqId: number) => Promise\n}\n\nexport default class IndexedCramFile {\n public cram: CramFile\n public index: CramIndexLike\n\n /**\n *\n * @param {object} args\n * @param {CramFile} args.cram\n * @param {Index-like} args.index object that supports getEntriesForRange(seqId,start,end) -> Promise[Array[index entries]]\n * @param {number} [args.cacheSize] optional maximum number of CRAM records to cache. default 20,000\n * @param {boolean} [args.checkSequenceMD5] - default true. if false, disables verifying the MD5\n * checksum of the reference sequence underlying a slice. In some applications, this check can cause an inconvenient amount (many megabases) of sequences to be fetched.\n */\n constructor(\n args: {\n index: CramIndexLike\n } & (\n | { cram: CramFile }\n | ({\n cram?: undefined\n seqFetch?: SeqFetch\n checkSequenceMD5?: boolean\n cacheSize?: number\n } & CramFileSource)\n ),\n ) {\n // { cram, index, seqFetch /* fasta, fastaIndex */ }) {\n this.cram =\n args.cram ??\n new CramFile({\n url: args.cramUrl,\n path: args.cramPath,\n filehandle: args.cramFilehandle,\n seqFetch: args.seqFetch,\n checkSequenceMD5: args.checkSequenceMD5,\n cacheSize: args.cacheSize,\n })\n\n if (!(this.cram instanceof CramFile)) {\n throw new Error('invalid arguments: no cramfile')\n }\n\n this.index = args.index\n }\n\n /**\n *\n * @param {number} seq numeric ID of the reference sequence\n * @param {number} start start of the range of interest. 1-based closed coordinates.\n * @param {number} end end of the range of interest. 1-based closed coordinates.\n * @returns {Promise[Array[CramRecord]]}\n */\n async getRecordsForRange(\n seq: number,\n start: number,\n end: number,\n opts: {\n viewAsPairs?: boolean\n pairAcrossChr?: boolean\n maxInsertSize?: number\n } = {},\n ) {\n opts.viewAsPairs = opts.viewAsPairs || false\n opts.pairAcrossChr = opts.pairAcrossChr || false\n opts.maxInsertSize = opts.maxInsertSize || 200000\n\n if (typeof seq === 'string') {\n // TODO: support string reference sequence names somehow\n throw new CramUnimplementedError(\n 'string sequence names not yet supported',\n )\n }\n const seqId = seq\n const slices = await this.index.getEntriesForRange(seqId, start, end)\n\n // TODO: do we need to merge or de-duplicate the blocks?\n\n // fetch all the slices and parse the feature data\n const filter = (feature: CramRecord) =>\n feature.sequenceId === seq &&\n feature.alignmentStart <= end &&\n feature.lengthOnRef !== undefined &&\n feature.alignmentStart + feature.lengthOnRef - 1 >= start\n const sliceResults = await Promise.all(\n slices.map(slice => this.getRecordsInSlice(slice, filter)),\n )\n\n let ret: CramRecord[] = Array.prototype.concat(...sliceResults)\n if (opts.viewAsPairs) {\n const readNames: Record = {}\n const readIds: Record = {}\n for (const read of ret) {\n const name = read.readName\n if (name === undefined) {\n throw new Error('readName undefined')\n }\n const id = read.uniqueId\n if (!readNames[name]) {\n readNames[name] = 0\n }\n readNames[name] += 1\n readIds[id] = 1\n }\n const unmatedPairs: Record = {}\n Object.entries(readNames).forEach(([k, v]) => {\n if (v === 1) {\n unmatedPairs[k] = true\n }\n })\n const matePromises = []\n for (const cramRecord of ret) {\n const name = cramRecord.readName\n if (name === undefined) {\n throw new Error('readName undefined')\n }\n if (\n unmatedPairs[name] &&\n cramRecord.mate &&\n (cramRecord.mate.sequenceId === seqId || opts.pairAcrossChr) &&\n Math.abs(cramRecord.alignmentStart - cramRecord.mate.alignmentStart) <\n opts.maxInsertSize\n ) {\n const mateSlices = this.index.getEntriesForRange(\n cramRecord.mate.sequenceId,\n cramRecord.mate.alignmentStart,\n cramRecord.mate.alignmentStart + 1,\n )\n matePromises.push(mateSlices)\n }\n }\n const mateBlocks = await Promise.all(matePromises)\n let mateChunks = [] as Slice[]\n for (const block of mateBlocks) {\n mateChunks.push(...block)\n }\n // filter out duplicates\n mateChunks = mateChunks\n .sort((a, b) => a.toString().localeCompare(b.toString()))\n .filter(\n (item, pos, ary) =>\n !pos || item.toString() !== ary[pos - 1]!.toString(),\n )\n\n const mateRecordPromises = []\n const mateFeatPromises: Promise[] = []\n for (const c of mateChunks) {\n let recordPromise = this.cram.featureCache.get(c.toString())\n if (!recordPromise) {\n recordPromise = this.getRecordsInSlice(c, () => true)\n this.cram.featureCache.set(c.toString(), recordPromise)\n }\n mateRecordPromises.push(recordPromise)\n const featPromise = recordPromise.then(feats => {\n const mateRecs = []\n for (const feature of feats) {\n if (feature.readName === undefined) {\n throw new Error('readName undefined')\n }\n if (unmatedPairs[feature.readName] && !readIds[feature.uniqueId]) {\n mateRecs.push(feature)\n }\n }\n return mateRecs\n })\n mateFeatPromises.push(featPromise)\n }\n const newMateFeats = await Promise.all(mateFeatPromises)\n if (newMateFeats.length) {\n const newMates = newMateFeats.reduce((result, current) =>\n result.concat(current),\n )\n ret = ret.concat(newMates)\n }\n }\n return ret\n }\n\n getRecordsInSlice(\n {\n containerStart,\n sliceStart,\n sliceBytes,\n }: { containerStart: number; sliceStart: number; sliceBytes: number },\n filterFunction: (r: CramRecord) => boolean,\n ) {\n const container = this.cram.getContainerAtPosition(containerStart)\n const slice = container.getSlice(sliceStart, sliceBytes)\n return slice.getRecords(filterFunction)\n }\n\n /**\n *\n * @param {number} seqId\n * @returns {Promise} true if the CRAM file contains data for the given\n * reference sequence numerical ID\n */\n hasDataForReferenceSequence(seqId: number) {\n return this.index.hasDataForReferenceSequence(seqId)\n }\n}\n","/*\n * Copyright (c) 2019 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\nconst RangeCoder = require(\"./arith_sh\");\nconst IOStream = require(\"./iostream\");\nconst ByteModel = require(\"./byte_model\");\nconst bzip2 = require(\"bzip2\");\n\nconst ARITH_ORDER = 1\nconst ARITH_EXT = 4\nconst ARITH_STRIPE = 8\nconst ARITH_NOSIZE = 16\nconst ARITH_CAT = 32\nconst ARITH_RLE = 64\nconst ARITH_PACK = 128\n\nmodule.exports = class RangeCoderGen {\n decode(src) {\n\tthis.stream = new IOStream(src);\n\treturn this.decodeStream(this.stream)\n }\n\n decodeStream(stream, n_out=0) {\n\tvar flags = this.stream.ReadByte();\n\tif (!(flags & ARITH_NOSIZE))\n\t n_out = this.stream.ReadUint7();\n\tvar e_len = n_out;\n\n\tvar order = flags & ARITH_ORDER;\n\n\t// 4-way recursion\n\tif (flags & ARITH_STRIPE)\n\t return this.decodeStripe(this.stream, n_out)\n\n\t// Meta data\n\tif (flags & ARITH_PACK) {\n\t var P\n\t [P, e_len] = this.decodePackMeta(this.stream)\n\t}\n\n\t// NOP, useful for tiny blocks\n\tif (flags & ARITH_CAT)\n\t var data = this.decodeCat(this.stream, e_len)\n\n\t// Entropy decode\n\telse if (flags & ARITH_EXT) {\n\t var data = this.decodeExt(this.stream, e_len)\n\t} else if (flags & ARITH_RLE) {\n\t var data = order\n\t\t? this.decodeRLE1(this.stream, e_len)\n\t\t: this.decodeRLE0(this.stream, e_len)\n\t} else {\n\t var data = order\n\t\t? this.decode1(this.stream, e_len)\n\t\t: this.decode0(this.stream, e_len)\n\t}\n\n\t// Transforms\n\tif (flags & ARITH_PACK)\n\t data = this.decodePack(data, P, n_out)\n\n\treturn data\n }\n\n encode(src, flags) {\n\tthis.stream = new IOStream(\"\", 0, src.length*1.1 + 100); // guestimate worst case!\n\n\tthis.stream.WriteByte(flags);\n\tif (!(flags & ARITH_NOSIZE))\n\t this.stream.WriteUint7(src.length);\n\n\tif (flags & ARITH_STRIPE)\n\t return Buffer.concat([this.stream.buf.slice(0, this.stream.pos),\n\t\t\t\t this.encodeStripe(this.stream, src, flags>>8)])\n\n\tvar order = flags & ARITH_ORDER;\n\tvar e_len = src.length;\n\n\t// step 1: Encode meta-data\n\tvar pack_meta\n\tif (flags & ARITH_PACK)\n\t [pack_meta, src, e_len] = this.encodePack(src)\n\n\t// step 2: Write any meta data\n\tif (flags & ARITH_PACK)\n\t this.stream.WriteStream(pack_meta)\n\n\t// step 3: arith encoding below\n\tif (flags & ARITH_RLE) {\n\t return order\n\t\t? this.encodeRLE1(src, e_len, this.stream)\n\t\t: this.encodeRLE0(src, e_len, this.stream);\n\t} else {\n\t return order\n\t\t? this.encode1(src, e_len, this.stream)\n\t\t: this.encode0(src, e_len, this.stream);\n\t}\n }\n\n //----------------------------------------------------------------------\n // Order-0 codec\n decode0(stream, n_out) {\n\tvar output = new Buffer.allocUnsafe(n_out);\n\n\tvar max_sym = stream.ReadByte()\n\tif (max_sym == 0)\n\t max_sym = 256\n\n\tvar byte_model = new ByteModel(max_sym);\n\n\tvar rc = new RangeCoder(stream);\n\trc.RangeStartDecode(stream);\n\n\tfor (var i = 0; i < n_out; i++)\n\t output[i] = byte_model.ModelDecode(stream, rc);\n\n\treturn output;\n }\n\n encode0(src, n_in, out) {\n\t// Count the maximum symbol present\n\tvar max_sym = 0;\n\tfor (var i = 0; i < n_in; i++)\n\t if (max_sym < src[i])\n\t\tmax_sym = src[i]\n\tmax_sym++; // FIXME not what spec states!?\n\n\tvar byte_model = new ByteModel(max_sym);\n\tout.WriteByte(max_sym);\n\tvar rc = new RangeCoder(out);\n\n\tfor (var i = 0; i < n_in; i++)\n\t byte_model.ModelEncode(out, rc, src[i])\n\trc.RangeFinishEncode(out)\n\n\treturn out.buf.slice(0, out.pos);\n }\n\n //----------------------------------------------------------------------\n // Order-1 codec\n\n decode1(stream, n_out) {\n\tvar output = new Buffer.allocUnsafe(n_out);\n\n\tvar max_sym = stream.ReadByte()\n\tif (max_sym == 0)\n\t max_sym = 256\n\n\tvar byte_model = new Array(max_sym);\n\tfor (var i = 0; i < max_sym; i++)\n\t byte_model[i] = new ByteModel(max_sym);\n\n\tvar rc = new RangeCoder(stream);\n\trc.RangeStartDecode(stream);\n\n\tvar last = 0;\n\tfor (var i = 0; i < n_out; i++) {\n\t output[i] = byte_model[last].ModelDecode(stream, rc);\n\t last = output[i];\n\t}\n\n\treturn output;\n }\n\n encode1(src, n_in, out) {\n\t// Count the maximum symbol present\n\tvar max_sym = 0;\n\tfor (var i = 0; i < n_in; i++)\n\t if (max_sym < src[i])\n\t\tmax_sym = src[i]\n\tmax_sym++; // FIXME not what spec states!\n\n\tvar byte_model = new Array(max_sym);\n\tfor (var i = 0; i < max_sym; i++)\n\t byte_model[i] = new ByteModel(max_sym);\n\tout.WriteByte(max_sym);\n\tvar rc = new RangeCoder(out);\n\n\tvar last = 0;\n\tfor (var i = 0; i < n_in; i++) {\n\t byte_model[last].ModelEncode(out, rc, src[i])\n\t last = src[i]\n\t}\n\trc.RangeFinishEncode(out)\n\n\treturn out.buf.slice(0, out.pos);\n }\n\n //----------------------------------------------------------------------\n // External codec\n decodeExt(stream, n_out) {\n\t// Bzip2 only for now\n\tvar output = new Buffer.allocUnsafe(n_out)\n\tvar bits = bzip2.array(stream.buf.slice(stream.pos))\n\tvar size = bzip2.header(bits)\n\tvar j = 0\n\tdo {\n\t var chunk = bzip2.decompress(bits, size);\n\t if (chunk != -1) {\n\t Buffer.from(chunk).copy(output, j)\n\t j += chunk.length\n\t\tsize -= chunk.length\n\t }\n\t} while(chunk != -1);\n\n\treturn output\n }\n\n encodeExt(stream, n_out) {\n\t// We cannot compress using Bzip2 now as it's\n\t// absent from bzip2.js, but consider using\n\t// https://github.com/cscott/compressjs\n }\n\n //----------------------------------------------------------------------\n // Order-0 RLE codec\n decodeRLE0(stream, n_out) {\n\tvar output = new Buffer.allocUnsafe(n_out);\n\n\tvar max_sym = stream.ReadByte()\n\tif (max_sym == 0)\n\t max_sym = 256\n\n\tvar model_lit = new ByteModel(max_sym);\n\tvar model_run = new Array(258);\n\tfor (var i = 0; i <= 257; i++)\n\t model_run[i] = new ByteModel(4)\n\n\tvar rc = new RangeCoder(stream);\n\trc.RangeStartDecode(stream);\n\n\tvar i = 0;\n\twhile (i < n_out) {\n\t output[i] = model_lit.ModelDecode(stream, rc)\n\t var part = model_run[output[i]].ModelDecode(stream, rc)\n\t var run = part\n\t var rctx = 256\n\t while (part == 3) {\n\t\tpart = model_run[rctx].ModelDecode(stream, rc)\n\t\trctx = 257\n\t\trun += part\n\t }\n\t for (var j = 1; j <= run; j++)\n\t\toutput[i+j] = output[i]\n\t i += run+1\n\t}\n\n\treturn output;\n }\n\n encodeRLE0(src, n_in, out) {\n\t// Count the maximum symbol present\n\tvar max_sym = 0;\n\tfor (var i = 0; i < n_in; i++)\n\t if (max_sym < src[i])\n\t\tmax_sym = src[i]\n\tmax_sym++; // FIXME not what spec states!\n\n\tvar model_lit = new ByteModel(max_sym);\n\tvar model_run = new Array(258);\n\tfor (var i = 0; i <= 257; i++)\n\t model_run[i] = new ByteModel(4)\n\n\tout.WriteByte(max_sym);\n\tvar rc = new RangeCoder(out);\n\n\tvar i = 0\n\twhile (i < n_in) {\n\t model_lit.ModelEncode(out, rc, src[i])\n\t var run = 1\n\t while (i+run < n_in && src[i+run] == src[i])\n\t\trun++\n\t run--\n\n\t var rctx = src[i]\n\t var last = src[i]\n\t i += run+1\n\n\t var part = run >= 3 ? 3 : run\n\t model_run[rctx].ModelEncode(out, rc, part)\n\t run -= part\n\t rctx = 256\n\t while (part == 3) {\n\t\tpart = run >= 3 ? 3 : run\n\t\tmodel_run[rctx].ModelEncode(out, rc, part)\n\t\trctx = 257\n\t\trun -= part\n\t }\n\t}\n\trc.RangeFinishEncode(out)\n\n\treturn out.buf.slice(0, out.pos);\n }\n\n //----------------------------------------------------------------------\n // Order-1 RLE codec\n\n decodeRLE1(stream, n_out) {\n\tvar output = new Buffer.allocUnsafe(n_out);\n\n\tvar max_sym = stream.ReadByte()\n\tif (max_sym == 0)\n\t max_sym = 256\n\n\tvar model_lit = new Array(max_sym);\n\tfor (var i = 0; i < max_sym; i++)\n\t model_lit[i] = new ByteModel(max_sym);\n\n\tvar model_run = new Array(258);\n\tfor (var i = 0; i <= 257; i++)\n\t model_run[i] = new ByteModel(4)\n\n\tvar rc = new RangeCoder(stream);\n\trc.RangeStartDecode(stream);\n\n\tvar last = 0;\n\tvar i = 0;\n\twhile (i < n_out) {\n\t output[i] = model_lit[last].ModelDecode(stream, rc)\n\t last = output[i]\n\t var part = model_run[output[i]].ModelDecode(stream, rc)\n\t var run = part\n\t var rctx = 256\n\t while (part == 3) {\n\t\tpart = model_run[rctx].ModelDecode(stream, rc)\n\t\trctx = 257\n\t\trun += part\n\t }\n\t for (var j = 1; j <= run; j++)\n\t\toutput[i+j] = output[i]\n\t i += run+1\n\t}\n\n\treturn output;\n }\n\n encodeRLE1(src, n_in, out) {\n\t// Count the maximum symbol present\n\tvar max_sym = 0;\n\tfor (var i = 0; i < n_in; i++)\n\t if (max_sym < src[i])\n\t\tmax_sym = src[i]\n\tmax_sym++; // FIXME not what spec states!\n\n\tvar model_lit = new Array(max_sym)\n\tfor (var i = 0; i < max_sym; i++)\n\t model_lit[i] = new ByteModel(max_sym);\n\tvar model_run = new Array(258);\n\tfor (var i = 0; i <= 257; i++)\n\t model_run[i] = new ByteModel(4)\n\n\tout.WriteByte(max_sym);\n\tvar rc = new RangeCoder(out);\n\n\tvar i = 0\n\tvar last = 0\n\twhile (i < n_in) {\n\t model_lit[last].ModelEncode(out, rc, src[i])\n\t var run = 1\n\t while (i+run < n_in && src[i+run] == src[i])\n\t\trun++\n\t run--\n\n\t var rctx = src[i]\n\t last = src[i]\n\t i += run+1\n\n\t var part = run >= 3 ? 3 : run\n\t model_run[rctx].ModelEncode(out, rc, part)\n\t run -= part\n\t rctx = 256\n\t while (part == 3) {\n\t\tpart = run >= 3 ? 3 : run\n\t\tmodel_run[rctx].ModelEncode(out, rc, part)\n\t\trctx = 257\n\t\trun -= part\n\t }\n\t}\n\trc.RangeFinishEncode(out)\n\n\treturn out.buf.slice(0, out.pos);\n }\n\n //----------------------------------------------------------------------\n // Pack method\n decodePackMeta(stream) {\n\tthis.nsym = stream.ReadByte()\n\n\tvar M = new Array(this.nsym);\n\tfor (var i = 0; i < this.nsym; i++)\n\t M[i] = stream.ReadByte()\n\n\tvar e_len = stream.ReadUint7(); // Could be derived data from nsym and n_out\n\n\treturn [M, e_len]\n }\n\n decodePack(data, M, len) {\n\tvar out = new Buffer.allocUnsafe(len);\n\n\tif (this.nsym <= 1) {\n\t // Constant value\n\t for (var i = 0; i < len; i++)\n\t\tout[i] = M[0]\n\n\t} else if (this.nsym <= 2) {\n\t // 1 bit per value\n\t for (var i = 0, j = 0; i < len; i++) {\n\t\tif (i % 8 == 0)\n\t\t var v = data[j++]\n\t\tout[i] = M[v & 1]\n\t\tv >>= 1\n\t }\n\n\t} else if (this.nsym <= 4) {\n\t // 2 bits per value\n\t for (var i = 0, j = 0; i < len; i++) {\n\t\tif (i % 4 == 0)\n\t\t var v = data[j++]\n\t\tout[i] = M[v & 3]\n\t\tv >>= 2\n\t }\n\n\t} else if (this.nsym <= 16) {\n\t // 4 bits per value\n\t for (var i = 0, j = 0; i < len; i++) {\n\t\tif (i % 2 == 0)\n\t\t var v = data[j++]\n\t\tout[i] = M[v & 15]\n\t\tv >>= 4\n\t }\n\n\t} else {\n\t // 8 bits per value: NOP\n\t return data\n\t}\n\n\treturn out\n }\n\n // Compute M array and return meta-data stream\n packMeta(src) {\n\tvar stream = new IOStream(\"\", 0, 1024)\n\n\t// Count symbols\n\tvar M = new Array(256)\n\tfor (var i = 0; i < src.length; i++)\n\t M[src[i]] = 1\n\n\t// Write Map\n\tfor (var nsym = 0, i = 0; i < 256; i++)\n\t if (M[i])\n\t\tM[i] = ++nsym; // map to 1..N\n\tstream.WriteByte(nsym);\n\n\t// FIXME: add check for nsym > 16?\n\t// Or just accept it as an inefficient waste of time.\n\tfor (var i = 0; i < 256; i++) {\n\t if (M[i]) {\n\t\tstream.WriteByte(i) // adjust to 0..N-1\n\t\tM[i]--;\n\t }\n\t}\n\n\treturn [stream, M, nsym]\n }\n\n encodePack(data) {\n\tvar meta, M, nsym\n\t[meta, M, nsym] = this.packMeta(data)\n\n\tvar len = data.length\n\tvar i = 0;\n\tif (nsym <= 1) {\n\t // Constant values\n\t meta.WriteUint7(0)\n\t return [meta, new Buffer.allocUnsafe(0), 0];\n\t}\n\n\tif (nsym <= 2) {\n\t // 1 bit per value\n\t var out = new Buffer.allocUnsafe(Math.floor((len+7)/8));\n\t for (var i = 0, j = 0; i < (len & ~7); i+=8, j++)\n\t\tout[j] = (M[data[i+0]]<<0)\n\t\t + (M[data[i+1]]<<1)\n\t\t + (M[data[i+2]]<<2)\n\t\t + (M[data[i+3]]<<3)\n\t\t + (M[data[i+4]]<<4)\n\t\t + (M[data[i+5]]<<5)\n\t\t + (M[data[i+6]]<<6)\n\t\t + (M[data[i+7]]<<7)\n\t if (i < len) {\n\t\tout[j] = 0;\n\t\tvar v = 0;\n\t\twhile (i < len) {\n\t\t out[j] |= M[data[i++]]< s);\n\t part[s] = new Array(ulen[s])\n\t}\n\n\tfor (var x = 0, i = 0; i < src.length; i+=N, x++) {\n\t for (var j = 0; j < N; j++)\n\t\tif (x < part[j].length)\n\t\t part[j][x] = src[i+j]\n\t}\n\n\t// Compress each part\n\tvar comp = new Array(N)\n\tvar total = 0\n\tfor (var s = 0; s < N; s++) {\n\t // Example: try O0 and O1 and choose best\n\t var comp0 = this.encode(part[s], 0)\n\t var comp1 = this.encode(part[s], 1)\n\t comp[s] = (comp1.length < comp0.length) ? comp1 : comp0\n\t total += comp[s].length\n\t}\n\n\t// Serialise\n\tvar out = new IOStream(\"\", 0, total+5*N + 1)\n\tout.WriteByte(N)\n\tfor (var s = 0; s < N; s++)\n\t out.WriteUint7(comp[s].length)\n\n\tfor (var s = 0; s < N; s++)\n\t out.WriteData(comp[s], comp[s].length)\n\n\treturn out.buf.slice(0, out.buf.pos)\n }\n\n decodeStripe(stream, len) {\n\tvar N = stream.ReadByte()\n\t\n\t// Retrieve lengths\n\tvar clen = new Array(N)\n\tvar ulen = new Array(N)\n\tfor (var j = 0; j < N; j++)\n\t clen[j] = stream.ReadUint7()\n\n\t// Decode streams\n\tvar T = new Array(N);\n\tfor (var j = 0; j < N; j++) {\n\t ulen[j] = Math.floor(len / N) + ((len % N) > j)\n\t T[j] = this.decodeStream(stream, ulen[j])\n\t}\n\n\t// Transpose\n\tvar out = new Buffer.allocUnsafe(len)\n\tfor (var j = 0; j < N; j++) {\n\t for (var i = 0; i < ulen[j]; i++) {\n\t\tout[i*N + j] = T[j][i];\n\t }\n\t}\n\n\treturn out\n }\n\n //----------------------------------------------------------------------\n // Cat method\n decodeCat(stream, len) {\n\tvar out = new Buffer.allocUnsafe(len);\n\tfor (var i = 0; i < len; i++)\n\t out[i] = stream.ReadByte()\n\n\treturn out\n }\n}\n","/*\n * Copyright (c) 2019 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\n// An arithmetic coder, based on Eugene Shelwien's reimplementation of\n// Michael Schindler range coder.\n//\n// Order-0 byte stream of ~/scratch/data/q40b\n// C: 3.1s decode (approx same vs 32-bit and 64-bit)\n// Arith_sh.js 6.7s decode (32-bit with carries)\n// Arith.js 317.0s decode (64-bit no carries); int64 crippling it.\n\n//----------------------------------------------------------------------\n// Arithmetic (range) coder\nmodule.exports = class RangeCoder {\n constructor(src) {\n\tthis.low = 0;\n\tthis.range = 0xffffffff;\n\tthis.code = 0;\n\tthis.FFnum = 0;\n\tthis.carry = 0;\n\tthis.cache = 0;\n }\n\n RangeStartDecode(src) {\n\tfor (var i = 0; i < 5; i++)\n\t this.code = (this.code << 8) + src.ReadByte();\n\tthis.code &= 0xffffffff;\n\tthis.code >>>= 0; // force to be +ve int\n }\n\n RangeGetFrequency(tot_freq) {\n\tthis.range = Math.floor(this.range / tot_freq);\n\t//return this.code / this.range;\n\treturn Math.floor(this.code / this.range);\n\n\t// Conceptual scenario; return freq only and don't modify range yet\n\t//return Math.floor(this.code / (Math.floor(this.range / tot_freq)));\n }\n\n RangeDecode(src, sym_low, sym_freq, tot_freq) {\n\t// Conceptually we divide range here, but in practice we cached it earlier\n\t//this.range = Math.floor(this.range / tot_freq);\n\n\tthis.code -= sym_low * this.range;\n\tthis.range *= sym_freq;\n\n\twhile (this.range < (1<<24)) {\n\t this.range *= 256;\n\t this.code = (this.code*256 + src.ReadByte());\n\t}\n }\n\n RangeShiftLow(dst) {\n\t// We know range is < (1<<24) as we got here. We already have a\n\t// cached copy of 8 bits from low. Is this correct, or does it need\n\t// fixing? Possible scenarios.\n\t// 1. Low < 0xff000000 thus low+range < 0xffffffff and cache\n\t// cannot possibly change. Output cache and as many ffs as needed.\n\t// 2. We already detected an overflow in RangeEncode, setting carry.\n\t// In this case output cached byte + 1 and any 00s needed.\n\t// 3. Neither case - range is low but we haven't yet detected if we're\n\t// XXffffff or XY000000 scenario. Increase counter for ff/00s.\n\n\tif (this.low < 0xff000000 | this.carry) {\n\t // cached byte if no overflow, byte+1 otherwise\n\t dst.WriteByte(this.cache + this.carry);\n\n\t // Flush any tracked FFs (no carry) or 00s (carry).\n\t while (this.FFnum) {\n\t\tdst.WriteByte(this.carry-1);\n\t\tthis.FFnum--;\n\t }\n\n\t // Take a copy of top byte ready for next flush\n\t this.cache = this.low >>> 24;\n\t this.carry = 0;\n\t} else {\n\t this.FFnum++; // keep track of number of trailing ff/00 bytes to write\n\t}\n\tthis.low <<= 8;\n\tthis.low >>>= 0; // force to be +ve int\n }\n\n RangeEncode(dst, sym_low, sym_freq, tot_freq) {\n\tvar old_low = this.low\n\tthis.range = Math.floor(this.range / tot_freq)\n\tthis.low += sym_low * this.range;\n\tthis.low >>>= 0; // Truncate to +ve int so we can spot overflow\n\tthis.range *= sym_freq;\n\n\t// \"low + sym*range < old_low\" means we overflow; set carry.\n\t// NB: can this.low < old_low occur twice before range < (1<<24)?\n\t// We claim not, but prove it!\n\tif (this.low < old_low) {\n\t if (this.carry != 0) console.log(\"ERROR: Multiple carry\")\n\t this.carry = 1\n\t}\n\n\t// Renormalise if range gets too small\n\twhile (this.range < (1<<24)) {\n\t this.range *= 256;\n\t this.RangeShiftLow(dst);\n\t}\n }\n\n RangeFinishEncode(dst) {\n\tfor (var i = 0; i < 5; i++)\n\t this.RangeShiftLow(dst)\n }\n};\n","/*\n * Copyright (c) 2019 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\n// An adaptive probability model for encoding and decoding of symbols\n// within a given alphabet, using the range coder to get/put the\n// compressed data.\n\nconst MAX_FREQ = ((1<<16)-17)\nconst STEP = 16\n\nmodule.exports = class ByteModel {\n constructor(max_sym = 256) {\n\tthis.total_freq = max_sym;\n\tthis.max_sym = max_sym-1;\n\tthis.S = new Array\n\tthis.F = new Array\n\n\tfor (var i = 0; i <= this.max_sym; i++) {\n\t this.S[i] = i;\n\t this.F[i] = 1;\n\t}\n }\n\n ModelDecode(src, rc) {\n\t// Find symbol\n\tvar freq = rc.RangeGetFrequency(this.total_freq);\n\n\t// Linear scan to find cumulative frequency 'freq'\n\tvar acc = 0;\n\tvar x = 0;\n\twhile (acc + this.F[x] <= freq)\n\t acc += this.F[x++];\n\n//\tfor (var acc = 0; (acc += this.F[x]) <= freq; x++)\n//\t ;\n//\tacc -= this.F[x];\n\n\t// Update range coder\n\trc.RangeDecode(src, acc, this.F[x], this.total_freq);\n\n\t// Update model\n\tthis.F[x] += STEP;\n\tthis.total_freq += STEP;\n\tif (this.total_freq > MAX_FREQ)\n\t this.ModelRenormalise();\n\t\n\n\t// Keep symbols approximately frequency sorted\n\tvar sym = this.S[x];\n\tif (x > 0 && this.F[x] > this.F[x-1]) {\n\t var tmp = this.F[x];\n\t this.F[x] = this.F[x-1];\n\t this.F[x-1] = tmp;\n\n\t tmp = this.S[x];\n\t this.S[x] = this.S[x-1];\n\t this.S[x-1] = tmp;\n\t}\n\n\treturn sym;\n }\n\n ModelRenormalise() {\n\t// Halve all the frequencies, being careful not to hit zero\n\tthis.total_freq = 0;\n\tfor (var i = 0; i <= this.max_sym; i++) {\n\t this.F[i] -= Math.floor(this.F[i] / 2);\n\t this.total_freq += this.F[i];\n\t}\n }\n\n ModelEncode(dst, rc, sym) {\n\t// Find cumulative frequency\n\tvar acc = 0;\n\tfor (var x = 0; this.S[x] != sym; x++)\n\t acc += this.F[x];\n\n\t// Encode\n\trc.RangeEncode(dst, acc, this.F[x], this.total_freq);\n\n\t// Update model\n\tthis.F[x] += STEP;\n\tthis.total_freq += STEP;\n\tif (this.total_freq > MAX_FREQ) // FIXME x2\n\t this.ModelRenormalise();\n\n\t// Keep symbols approximately frequency sorted\n\tvar sym = this.S[x];\n\tif (x > 0 && this.F[x] > this.F[x-1]) {\n\t var tmp = this.F[x];\n\t this.F[x] = this.F[x-1];\n\t this.F[x-1] = tmp;\n\n\t tmp = this.S[x];\n\t this.S[x] = this.S[x-1];\n\t this.S[x-1] = tmp;\n\t}\n }\n};\n","/*\n * Copyright (c) 2019 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\nconst IOStream = require(\"./iostream\");\nconst ByteModel = require(\"./byte_model\");\nconst RangeCoder = require(\"./arith_sh\");\n\n\n//----------------------------------------------------------------------\n// Main arithmetic entry function: decodes a compressed src and\n// returns the uncompressed buffer.\n\nfunction read_array(src, tab, size) {\n var j = 0; // array value\n var z = 0; // array index: tab[j]\n var last = -1;\n\n // Remove first level of run-length encoding\n var R = new Array(1024) // runs\n while (z < size) {\n\tvar run = src.ReadByte()\n\tR[j++] = run\n\tz += run\n\n\tif (run == last) {\n\t var copy = src.ReadByte()\n\t z += run * copy\n\t while (copy--)\n\t\tR[j++] = run\n\t}\n\tlast = run\n }\n\n // Now expand runs in R to tab, noting 255 is max run\n var i = 0\n j = 0\n z = 0\n while (z < size) {\n\tvar run_len = 0\n\tdo {\n\t var part = R[j++]\n\t run_len += part\n\t} while (part == 255)\n\t\n\twhile (run_len--)\n\t tab[z++] = i;\n\ti++\n }\n}\n\nconst QMAX = 256\n\nconst FLAG_DEDUP = 2\nconst FLAG_FLEN = 4\nconst FLAG_SEL = 8 // whether selector is used in context\nconst FLAG_QMAP = 16\nconst FLAG_PTAB = 32\nconst FLAG_DTAB = 64\nconst FLAG_QTAB = 128\n\nconst GFLAG_MULTI_PARAM = 1\nconst GFLAG_HAVE_STAB = 2\nconst GFLAG_DO_REV = 4\n\n// Compute a new context from our current state and qual q\nfunction fqz_update_ctx(params, state, q) {\n var last = params.context\n state.qctx = ((state.qctx << params.qshift) + params.qtab[q]); // >>> 0\n last += ((state.qctx & ((1<>> 0\n\n if (params.do_pos)\n\tlast += params.ptab[Math.min(state.p, 1023)] << params.ploc\n\n if (params.do_delta) {\n\tlast += params.dtab[Math.min(state.delta, 255)] << params.dloc\n\t// Is it better to use q here or qtab[q]?\n\t// If qtab[q] we can map eg [a-z0-9A-Z]->0 ,->1 and have\n\t// delta being a token number count into comma separated lists?\n\tstate.delta += (state.prevq != q) ? 1 : 0\n\tstate.prevq = q\n }\n\n if (params.do_sel)\n\tlast += state.s << params.sloc\n\n state.p--\n\n return last & 0xffff\n}\n\nfunction decode_fqz_single_param(src) {\n var p = {} // params\n \n // Load FQZ parameters\n p.context = src.ReadUint16()\n p.pflags = src.ReadByte()\n\n p.do_dedup = p.pflags & FLAG_DEDUP\n p.fixed_len = p.pflags & FLAG_FLEN\n p.do_sel = p.pflags & FLAG_SEL\n p.do_qmap = p.pflags & FLAG_QMAP\n p.do_pos = p.pflags & FLAG_PTAB\n p.do_delta = p.pflags & FLAG_DTAB\n p.do_qtab = p.pflags & FLAG_QTAB\n\n p.max_sym = src.ReadByte()\n\n var x = src.ReadByte()\n p.qbits = x>>4\n p.qshift = x&15\n x = src.ReadByte()\n p.qloc = x>>4\n p.sloc = x&15\n x = src.ReadByte()\n p.ploc = x>>4\n p.dloc = x&15\n\n // Qual map, eg to \"unbin\" Illumina qualities\n p.qmap = new Array(256);\n if (p.pflags & FLAG_QMAP) {\n\tfor (var i = 0; i < p.max_sym; i++)\n\t p.qmap[i] = src.ReadByte()\n } else {\n\t// Useful optimisation to speed up main loop\n\tfor (var i = 0; i < 256; i++)\n\t p.qmap[i] = i; // NOP\n }\n\n // Read tables\n p.qtab = new Array(1024);\n if (p.qbits > 0 && (p.pflags & FLAG_QTAB)) {\n\tread_array(src, p.qtab, 256)\n } else {\n\t// Useful optimisation to speed up main loop\n\tfor (var i = 0; i < 256; i++)\n\t p.qtab[i] = i; // NOP\n }\n\n p.ptab = new Array(1024);\n if (p.pflags & FLAG_PTAB)\n\tread_array(src, p.ptab, 1024);\n\n p.dtab = new Array(256);\n if (p.pflags & FLAG_DTAB)\n\tread_array(src, p.dtab, 256);\n\n return p\n}\n\nfunction decode_fqz_params(src) {\n var gparams = {\n\tmax_sym: 0\n }\n\n // Check fqz format version\n var vers = src.ReadByte()\n if (vers != 5) {\n\tconsole.error(\"Invalid FQZComp version number\");\n\treturn;\n }\n\n var gflags = src.ReadByte()\n var nparam = (gflags & GFLAG_MULTI_PARAM) ? src.ReadByte() : 1\n var max_sel = gflags.nparam > 1 ? gflags.nparam-1 : 0 // Note max_sel, not num_sel\n\n var stab = new Array(256);\n if (gflags & GFLAG_HAVE_STAB) {\n\tmax_sel = src.ReadByte()\n\tread_array(src, stab, 256);\n } else {\n\tfor (var i = 0; i < nparam; i++)\n\t stab[i] = i;\n\tfor (; i < 256; i++)\n\t stab[i] = nparam-1;\n }\n gparams.do_rev = (gflags & GFLAG_DO_REV)\n gparams.stab = stab\n gparams.max_sel = max_sel\n\n gparams.params = new Array(gparams.nparam)\n for (var p = 0; p < nparam; p++) {\n\tgparams.params[p] = decode_fqz_single_param(src)\n\tif (gparams.max_sym < gparams.params[p].max_sym)\n\t gparams.max_sym = gparams.params[p].max_sym\n }\n\n return gparams\n}\n\nfunction fqz_create_models(gparams) {\n var model = {}\n\n model.qual = new Array(1<<16)\n for (var i = 0; i < (1<<16); i++)\n\tmodel.qual[i] = new ByteModel(gparams.max_sym+1) // +1 as max value not num. values\n\n model.len = new Array(4)\n for (var i = 0; i < 4; i++)\n\tmodel.len[i] = new ByteModel(256)\n\n model.rev = new ByteModel(2)\n model.dup = new ByteModel(2)\n\n if (gparams.max_sel > 0)\n\tmodel.sel = new ByteModel(gparams.max_sel+1) // +1 as max value not num. values\n\n return model\n}\n\n// Initialise a new record, updating state.\n// Returns 1 if dup, otherwise 0\nfunction decode_fqz_new_record(src, rc, gparams, model, state, rev) {\n // Parameter selector\n if (gparams.max_sel > 0) {\n\tstate.s = model.sel.ModelDecode(src, rc)\n } else {\n\tstate.s = 0;\n }\n state.x = gparams.stab[state.s]\n\n var params = gparams.params[state.x]\n\n // Reset contexts at the start of each new record\n if (params.fixed_len >= 0) {\n\t// Not fixed or fixed but first record\n\tvar len = model.len[0].ModelDecode(src, rc)\n\tlen |= model.len[1].ModelDecode(src, rc) << 8\n\tlen |= model.len[2].ModelDecode(src, rc) << 16\n\tlen |= model.len[3].ModelDecode(src, rc) << 24\n\tif (params.fixed_len > 0)\n\t params.fixed_len = -len\n } else {\n\tlen = -params.fixed_len\n }\n state.len = len\n\n if (gparams.do_rev)\n\trev[state.rec] = model.rev.ModelDecode(src, rc)\n\n state.is_dup = 0\n if (params.pflags & FLAG_DEDUP) {\n\tif (model.dup.ModelDecode(src, rc))\n\t state.is_dup = 1\n }\n\n state.p = len; // number of remaining bytes in this record\n state.delta = 0\n state.qctx = 0\n state.prevq = 0\n state.rec++\n}\n\nfunction decode_fqz(src, q_lens) {\n // Decode parameter block\n var n_out = src.ReadUint7()\n var gparams = decode_fqz_params(src)\n if (!gparams) return\n var params = gparams.params\n var rev = new Array(q_lens.length)\n\n // Create initial models\n var model = fqz_create_models(gparams)\n\n // Create our entropy encoder and output buffers\n var rc = new RangeCoder(src)\n rc.RangeStartDecode(src)\n var output = new Buffer.allocUnsafe(n_out)\n\n // Internal FQZ state\n var state = {\n\tqctx:0, // Qual-only sub-context\n\tprevq:0, // Previous quality value\n\tdelta:0, // Running delta (q vs prevq)\n\tp:0, // Number of bases left in current record\n\ts:0, // Current parameter selector value (0 if unused)\n\tx:0, // \"stab\" tabulated copy of s\n\tlen:0, // Length of current string\n\tis_dup:0, // This string is a duplicate of last\n\trec:0 // Record number\n }\n\n // The main decode loop itself\n var i = 0 // position in output buffer\n while (i < n_out) {\n\tif (state.p == 0) {\n\t decode_fqz_new_record(src, rc, gparams, model, state, rev)\n\t if (state.is_dup > 0) {\n\t\tif (model.dup.ModelDecode(src, rc)) {\n\t\t // Duplicate of last line\n\t\t for (var x = 0; x < len; x++)\n\t\t\toutput[i+x] = output[i+x-state.len]\n\t\t i += state.len\n\t\t state.p = 0\n\t\t continue\n\t\t}\n\t }\n\t q_lens.push(state.len)\n\n\t var params = gparams.params[state.x]\n\t var last = params.context\n\t}\n\n\t// Decode the current quality (possibly mapped via qmap)\n\tvar Q = model.qual[last].ModelDecode(src, rc)\n\n\t//if (params.do_qmap)\n\t// output[i++] = params.qmap[Q];\n\t//else\n\t// output[i++] = Q\n\toutput[i++] = params.qmap[Q]; // optimised version of above\n\tlast = fqz_update_ctx(params, state, Q)\n }\n\n if (gparams.do_rev)\n\treverse_qualities(output, n_out, rev, q_lens)\n\n return output;\n}\n\nfunction reverse_qualities(qual, qual_len, rev, len) {\n var rec = 0\n var i = 0\n while (i < qual_len) {\n\tif (rev[rec]) {\n\t var j = 0\n\t var k = len[rec]-1\n\t while (j < k) {\n\t\tvar tmp = qual[i+j]\n\t\tqual[i+j] = qual[i+k]\n\t\tqual[i+k] = tmp\n\t\tj++\n\t\tk--\n\t }\n\t}\n\n\ti += len[rec++];\n }\n}\n\nfunction decode(src, q_lens) {\n var stream = new IOStream(src);\n\n //var n_out = stream.ReadUint32(); stream.ReadUint32(); // move to main\n\n return decode_fqz(stream, q_lens);\n}\n \n//----------------------------------------------------------------------\n// FQZComp encoder.\n\nfunction pick_fqz_params(src, q_lens, q_dirs, qhist) {\n // Find cardinality of q_dirs\n var qd_last = q_dirs[0];\n for (var i = 0; i < q_dirs.length; i++)\n\tif (q_dirs[i] != qd_last)\n\t break;\n var qd_fixed = (i == q_dirs.length) ? 1 : 0\n\n // Scan input to find number of symbols and max symbol\n var nsym = 0\n var max_sym = 0\n\n // selector == 0: Assume one single input dataset\n for (var i = 0; i < 256; i++)\n\tqhist[0][i] = 0;\n\n var rec = 0;\n var len = 0\n for (var i = 0; i < src.length; i++) {\n\tif (len == 0) {\n\t len = q_lens[rec < q_lens.length-1 ? rec++ : rec]\n\t}\n\tqhist[0][src[i]]++;\n\tlen--;\n }\n for (var i = 0; i < 256; i++) {\n\tif (!qhist[0][i])\n\t continue;\n\tif (max_sym < i)\n\t max_sym = i;\n\tnsym++;\n }\n\n var qshift = 5\n var do_qmap = 0\n // Reduced symbol frequencies implies lower qshift and\n // a lookup table to go from qual to Q\n if (nsym <= 16) {\n\tdo_qmap = 1 // based on qhist\n\tif (nsym <= 2)\n\t qshift = 1\n\telse if (nsym <= 4)\n\t qshift = 2\n\telse if (nsym <= 8)\n\t qshift = 3\n\telse\n\t qshift = 4\n }\n\n// // Two params and a 1-bit selector.\n// // This is 1% overhead vs two data sets compressed independently.\n// // It's 6.9% smaller than compressing both together with 1 param.\n// if (0) return [{\n//\t// q4\n//\tqbits: 8,\n//\tqshift: 2,\n//\tqloc: 7,\n//\n//\tpbits: 7,\n//\tpshift: 1,\n//\tploc: 0,\n//\n//\tdbits: 0,\n//\tdshift: 0,\n//\tdloc: 0,\n//\n// sbits: 0,\n// sloc: 0,\n//\n//\t//sbits: 2,\n//\t//do_stab: 1,\n//\tsbits: 1,\n//\tdo_stab: 0,\n//\tcontext: (0<<15),\n//\n//\tmax_sym: 36,\n//\tnsym: 4,\n//\n//\tdo_qmap: 1,\n//\tdo_dedup: 0,\n//\tfixed_len: 1,\n//\tdo_sel: 0,\n//\tdo_rev: 0,\n//\tdo_pos: 1,\n//\tdo_delta: 0,\n//\tdo_qtab: 0\n// }, {\n//\t//q40\n//\tqbits: 9,\n//\tqshift: 5,\n//\tqloc: 7,\n//\n//\tpbits: 7,\n//\tpshift: 0,\n//\tploc: 0,\n//\n//\tdbits: 0,\n//\tdshift: 0,\n//\tdloc: 0,\n//\n// sbits: 0,\n// sloc: 0,\n//\n//\t//sbits: 2,\n//\t//do_stab: 1,\n//\tsbits: 1,\n//\tdo_stab: 0,\n//\tcontext: (1<<15),\n//\n//\tmax_sym: 44,\n//\tnsym: 45,\n//\n//\tdo_qmap: 0,\n//\tdo_dedup: 0,\n//\tfixed_len: 1,\n//\tdo_sel: 0,\n//\tdo_rev: 0,\n//\tdo_pos: 1,\n//\tdo_delta: 0,\n//\tdo_qtab: 0\n// }]\n\n return [{qbits: 8+(qshift>4),\n\t qshift: qshift,\n\t qloc: 7,\n\n\t pbits: 7,\n\t pshift: q_lens[0] > 128 ? 1 : 0,\n\t ploc: 0,\n\n\t dbits: qshift>4 ? 0 : 1,\n\t dshift: 3,\n\t dloc: 15,\n\n\n\t // NB: Also useful as a way of embedding sel and doing sel\n\t // specific contexts. Identical bar context. Eg 0<<15 or 1<<15.\n\t sbits: 0,\n\t sloc: 15,\n\t do_stab: 0,\n\t context: (0<<15),\n\n\t max_sym: max_sym,\n\t nsym: nsym,\n\n\t do_qmap: do_qmap,\n\t do_dedup: 0,\n\t fixed_len: (q_lens.length == 1) ? 1 : 0,\n\t do_sel: 0,\n\t do_rev: 0,\n\t do_pos: 1,\n\t do_delta: (qshift <= 4) ? 1 : 0,\n\t do_qtab: 0,\n\n\t // Override above with some attempt at using selectors\n\t // when the q_dirs are specific and non-fixed.\n\t qbits: 8+(qshift>4)-(qd_fixed==0),\n\t sbits: 1,\n\t sloc: 15-(qshift<=4), // read1 vs read2\n\t do_stab: 1,\n\t do_sel: 1,\n\t \n//\t // q4+dir: 7245769 with, 7353962 without. 1.5% saving\n//\t qbits: 6,\n//\t dbits: 2,\n//\t dshift: 2,\n//\t dloc: 13,\n//\t sbits: 1,\n//\t sloc: 15,\n//\t do_stab: 1,\n//\t do_sel: 1,\n\n\t // with 20 bits of context, q40 = 31741545\n\t // qbits 10, dbits 2, pbits 7, sbits 1\n\t }]\n}\n\nfunction store_array(out, tab, size) {\n var i = 0; // index into tab\n var j = 0; // current value in tab[i]\n\n var tmp1 = new Array(size*2);\n var sz1 = 0;\n\n // First level of RLE. Replace all runs of 'j' values\n // with run-lengths, including zeros for missing values.\n // Eg 0 1 2 2 2 3 3 3 4 4 4 5 5 5 5 7 7\n // to 1 1 3 3 3 4 0 2\n while (i < size) {\n\t// Length of j^{th} element\n\tvar i_start = i\n\twhile (i < size && tab[i] == j)\n\t i++;\n\tvar run_len = i - i_start\n\n\t// Encode run length to tmp array\n\tdo {\n\t var r = Math.min(255, run_len)\n\t tmp1[sz1++] = r\n\t run_len -= r\n\t} while (r == 255)\n\tj++;\n }\n\n // Second round of RLE on our tmp array, using a different\n // RLE algorithm.\n // Eg 1 1 3 3 3 4 0 2\n // to 1 1 +0 3 3 +1 4 0 2\n var last = -1\n var tmp2 = new Array(size*2)\n var sz2 = 0\n i = 0 // index into tmp1]\n // k is used size of tmp1[]\n while (i < sz1) {\n\tvar curr = tmp1[i++];\n\ttmp2[sz2++] = curr\n\tif (curr == last) {\n\t var i_start = i;\n\t while (i < sz1 && tmp1[i] == last && i - i_start < 255)\n\t\ti++;\n\t tmp2[sz2++] = i - i_start;\n\t} else {\n\t last = curr\n\t}\n }\n\n // Append 2nd RLE, tmp2, to out.\n out.WriteData(tmp2, sz2)\n}\n\n\t\t\t\t \n\n// q_lens is an array of quality lengths per record.\n// (If they're all the same, just set one value.)\nfunction encode_fqz_params(out, params, qhist, qtab, ptab, dtab, stab) {\n var dsqr = [\n 0, 1, 1, 1, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3,\n 4, 4, 4, 4, 4, 4, 4, 4, 4, 5, 5, 5, 5, 5, 5, 5,\n 5, 5, 5, 5, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6,\n 6, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7\n ]\n\n for (var i = 0; i < params.length; i++)\n\tstab[i] = i; // 1 parameter set per selector value\n for (; i < 256; i++)\n\tstab[i] = params.length-1;\n\n // Store global meta-data\n out.WriteByte(5); // FQZ format number\n var gflags = ((params.length > 1) ? GFLAG_MULTI_PARAM : 0)\n\t | ((params[0].do_stab) ? GFLAG_HAVE_STAB : 0)\n out.WriteByte(gflags)\n\n if (gflags & GFLAG_MULTI_PARAM)\n\tout.WriteByte(params.length) // Number of parameter blocks.\n\n if (gflags & GFLAG_HAVE_STAB) {\n\tvar max_sel = 1< 0) max_sel--;\n\tout.WriteByte(max_sel)\n\tstore_array(out, stab, 256)\n }\n\n // Store per-param meta-data\n for (var p = 0; p < params.length; p++) {\n\tout.WriteUint16(params[p].context)\n\tout.WriteByte((params[p].do_qtab ? FLAG_QTAB : 0) | // FLAG\n\t\t (params[p].do_delta ? FLAG_DTAB : 0) |\n\t\t (params[p].do_pos ? FLAG_PTAB : 0) |\n\t\t (params[p].do_qmap ? FLAG_QMAP : 0) |\n\t\t (params[p].do_sel ? FLAG_SEL : 0) |\n\t\t (params[p].fixed_len? FLAG_FLEN : 0) |\n\t\t (params[p].do_dedup ? FLAG_DEDUP : 0))\n\tif (params[p].do_qmap)\n\t out.WriteByte(params[p].nsym)\n\telse\n\t out.WriteByte(params[p].max_sym)\n\tout.WriteByte((params[p].qbits << 4) | (params[p].qshift))\n\tout.WriteByte((params[p].qloc << 4) | (params[p].sloc))\n\tout.WriteByte((params[p].ploc << 4) | (params[p].dloc))\n\n\tif (params[p].do_qmap) {\n\t params[p].max_sym = params[p].nsym\n\t var n = 0;\n\t for (var i = 0; i < 256; i++) {\n\t\tif (qhist[p][i]) {\n\t\t out.WriteByte(i)\n\t\t qhist[p][i] = n++;\n\t\t}\n\t }\n\t // Ensure we have all matched input params\n\t for (; n < params[p].nsym; n++)\n\t\tout.WriteByte(0)\n\t} else {\n\t //params[p].nsym = 255;\n\t for (var i = 0; i < 256; i++)\n\t\tqhist[p][i] = i; // NOP\n\t}\n\n\tif (params[p].qbits > 0) {\n\t //\t// Eg map 0-44 to a smaller range, to improve context usage.\n\t //\t// Makes q40 test set go from 33596471 to 33450075 (-0.4%)\n\t //\tparams[p].do_qtab = 1;\n\t //\tfor (var j = i = 0; i < params[p].max_sym; i++) {\n\t //\t qtab[i]=j;\n\t //\t if ((i%3)!=0 | i >= 28) j++\n\t //\t console.log(\"qtab[\",i,\"]=\",qtab[i]);\n\t //\t}\n\t //\tfor (; i < 256; i++)\n\t //\t qtab[i] = qtab[params[p].max_sym-1]\n\n\t for (var i = 0; i < 256; i++)\n\t\tqtab[p][i] = i; // NOP for now\n\n\t if (params[p].do_qtab)\n\t\tstore_array(out, qtab[p], 256)\n\t}\n\n\tif (params[p].pbits > 0) {\n\t for (var i = 0; i < 1024; i++)\n\t\tptab[p][i] = Math.min((1<> params[p].pshift)\n\n\t store_array(out, ptab[p], 1024)\n\t}\n\n\tif (params[p].dbits > 0) {\n\t for (var i = 0; i < 256; i++)\n\t\tif (dsqr[i] > (1<> params[p].dshift)]\n\n\t store_array(out, dtab[p], 256)\n\t}\n }\n\n return out\n}\n\nfunction encode_fqz(out, src, q_lens, q_dirs, params, qhist, qtab, ptab, dtab, stab) {\n //console.error(\"0:\",params[0])\n //console.error(\"1:\",params[1])\n\n var max_sel = 1< 0) max_sel--\n var n_in = src.length\n\n // Create the models\n var max_sym = 0;\n for (var p = 0; p < params.length; p++)\n\tif (max_sym < params[p].max_sym)\n\t max_sym = params[p].max_sym;\n\n var model_qual = new Array(1<<16)\n for (var i = 0; i < (1<<16); i++)\n\tmodel_qual[i] = new ByteModel(max_sym+1)\n\n var model_len = new Array(4)\n for (var i = 0; i < 4; i++)\n\tmodel_len[i] = new ByteModel(256)\n\n var model_rev = new ByteModel(2)\n var model_dup = new ByteModel(2)\n var model_sel = new ByteModel(max_sel+1)\n\n // Note: our JavaScript encoder doesn't have a way for reversing\n // some quality strings, so we ignore do_rev for now.\n var rc = new RangeCoder(src)\n\n // The main encoding loop\n var p = 0; // remaining position along current record\n var i = 0; // index in src data\n var rec = 0;\n\n while (i < n_in) {\n\tif (p == 0) {\n\t //var s = 0 // single non-mixed sample\n\t var s = q_dirs[rec]\n\t if (params[0].sbits > 0) {// FIXME: check All params[].do_stab / sbits must be identical\n\t\t//console.log(\"Ssel\", s)\n\t model_sel.ModelEncode(out, rc, s)\n\t }\n\t var x = stab[s]\n\n\t // Reset contexts at the statr of each new record\n\t var len = q_lens[Math.min(q_lens.length-1, rec++)]\n\t if (params[x].fixed_len) {\n\t\tif (params[x].fixed_len > 0) { // First length\n\t\t //console.log(\"Len\", len)\n\t\t model_len[0].ModelEncode(out, rc, len & 0xff)\n\t\t model_len[1].ModelEncode(out, rc, (len>>8) & 0xff)\n\t\t model_len[2].ModelEncode(out, rc, (len>>16) & 0xff)\n\t\t model_len[3].ModelEncode(out, rc, (len>>24) & 0xff)\n\t\t params[x].fixed_len = -1; // indicate we've stored it once\n\t\t}\n\t } else {\n\t\t//console.log(\"len\", len)\n\t\tmodel_len[0].ModelEncode(out, rc, len & 0xff)\n\t\tmodel_len[1].ModelEncode(out, rc, (len>>8) & 0xff)\n\t\tmodel_len[2].ModelEncode(out, rc, (len>>16) & 0xff)\n\t\tmodel_len[3].ModelEncode(out, rc, (len>>24) & 0xff)\n\t }\n\n\t if (params[x].do_dedup)\n\t\tprocess.exit(1) // FIXME\n\n\t p = len\n\t var delta = 0\n\t //var last = 0\n\t var last = params[x].context\n\t var qlast = 0\n\t var q1 = 0\n\t}\n\n\t// Encode current quality\n\tvar q = src[i++]\n\tvar Q = qhist[x][q]\n\tmodel_qual[last].ModelEncode(out, rc, Q)\n\t//console.log(\"Ctx\",last,qhist[x][q])\n\n\t// Update contexts for next quality\n\tqlast = (qlast << params[x].qshift) + qtab[x][Q]\n\tlast = params[x].context\n\tlast += (qlast & ((1< 0)\n\t last += ptab[x][Math.min(p, 1023)] << params[x].ploc\n\n\tif (params[x].dbits > 0) {\n\t last += dtab[x][Math.min(delta, 255)] << params[x].dloc\n\t delta += (q1 != Q) ? 1 : 0\n\t q1 = Q\n\t}\n\n\tif (params[x].do_sel)\n\t last += s << params[x].sloc\n\n\tlast = (last & 0xffff)\n\tp--\n }\n\n rc.RangeFinishEncode(out)\n return out.buf.slice(0, out.pos)\n}\n\nfunction encode(src, q_lens, q_dirs) {\n var qhist = new Array(2)\n var qtab = new Array(2)\n var ptab = new Array(2)\n var dtab = new Array(2)\n var stab = new Array(256)\n\n for (var s = 0; s < 2; s++) {\n qhist[s] = new Array(256)\n qtab[s] = new Array(256)\n ptab[s] = new Array(1024) \n dtab[s] = new Array(256)\n }\n\n var out = new IOStream(\"\", 0, src.length*1.1 + 100); // FIXME: guestimate worst case\n\n out.WriteUint7(src.length);\n var params = pick_fqz_params(src, q_lens, q_dirs, qhist)\n var out = encode_fqz_params(out, params, qhist, qtab, ptab, dtab, stab)\n return encode_fqz(out, src, q_lens, q_dirs, params, qhist, qtab, ptab, dtab, stab)\n}\n\nmodule.exports = { decode, encode }\n","/*\n * Copyright (c) 2020 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\n// This is an interface to the htscodecs reference implementation of\n// the CRAM 3.1 codecs.\n\n// This JavaScript file is not part of the reference implementation\n// and is simply and interface to get a consistent interface for cram-js.\n\n\"use strict\";\n\nvar r4x8 = require('./rans');\nvar r4x16 = require('./rans4x16');\nvar arith = require('./arith_gen');\nvar fqzcomp = require('./fqzcomp');\nvar tok3 = require('./tok3');\n\nfunction r4x8_uncompress(inputBuffer, outputBuffer) {\n r4x8.decode(inputBuffer).copy(outputBuffer, 0, 0);\n}\n\nfunction r4x16_uncompress(inputBuffer, outputBuffer) {\n r4x16.decode(inputBuffer).copy(outputBuffer, 0, 0);\n}\n\nfunction arith_uncompress(inputBuffer, outputBuffer) {\n arith.decode(inputBuffer).copy(outputBuffer, 0, 0);\n}\n\nfunction fqzcomp_uncompress(inputBuffer, outputBuffer) {\n var q_lens = new Array\n fqzcomp.decode(inputBuffer, q_lens).copy(outputBuffer, 0, 0);\n}\n\nfunction tok3_uncompress(inputBuffer, outputBuffer) {\n // Returns in string form instead of buffer\n var out = tok3.decode(inputBuffer, 0, '\\0');\n Buffer.from(out, 'binary').copy(outputBuffer, 0, 0);\n}\n\nmodule.exports = {\n r4x8_uncompress: r4x8_uncompress,\n r4x16_uncompress: r4x16_uncompress,\n arith_uncompress: arith_uncompress,\n fqzcomp_uncompress: fqzcomp_uncompress,\n tok3_uncompress: tok3_uncompress,\n};\n","/*\n * Copyright (c) 2019 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\n// Turn a buffer into a fake stream with get / put commands.\n// This enables up to closely match the published pseudocode.\nmodule.exports = class IOStream {\n constructor(buf, start_pos = 0, size = 0) {\n\tif (size != 0) {\n\t this.buf = Buffer.allocUnsafe(size)\n\t this.length = size\n\t} else {\n\t this.buf = buf\n\t this.length = buf.length\n\t}\n\tthis.pos = start_pos\n }\n\n // ----------\n // Reading\n EOF() {\n\treturn this.pos >= this.length\n }\n\n ReadData(len) {\n\tvar A = this.buf.slice(this.pos, this.pos+len)\n\tthis.pos += len;\n\treturn A\n }\n\n ReadByte() {\n\tconst b = this.buf[this.pos]\n\tthis.pos++\n\treturn b\n }\n\n ReadChar() {\n\tconst b = this.buf[this.pos]\n\tthis.pos++\n\treturn String.fromCharCode(b)\n }\n\n ReadUint16() {\n\tvar i = this.ReadByte()\n\ti |= this.ReadByte()<<8\n\treturn i\n }\n\n ReadUint32() {\n\tconst i = this.buf.readInt32LE(this.pos)\n\tthis.pos += 4\n\treturn i\n }\n\n // nul terminated string\n ReadString() {\n\tvar s = \"\"\n\tdo {\n\t var b = this.buf[this.pos++]\n\t if (b)\n\t\ts += String.fromCharCode(b)\n\t} while (b)\n\treturn s\n }\n\n// ReadUint7() {\n//\t// Variable sized unsigned integers\n//\tvar i = 0;\n//\tvar s = 0;\n//\tdo {\n//\t var c = this.ReadByte();\n//\t i = i | ((c & 0x7f)<= 0xf0) {\n\t // 1111xxxx => +4 bytes\n\t i = (i & 0x0f) << 28;\n\t i += (this.buf[this.pos+0] << 20)\n\t + (this.buf[this.pos+1] << 12)\n\t + (this.buf[this.pos+2] << 4)\n\t + (this.buf[this.pos+3] >> 4);\n\t this.pos += 4;\n\t //process.stderr.write(\" 4i=\"+i+\"\\n\");\n\t} else if (i >= 0xe0) {\n\t // 1110xxxx => +3 bytes\n\t i = (i & 0x0f) << 24;\n\t i += (this.buf[this.pos+0] << 16)\n\t + (this.buf[this.pos+1] << 8)\n\t + (this.buf[this.pos+2] << 0);\n\t this.pos += 3;\n\t //process.stderr.write(\" 3i=\"+i+\"\\n\");\n\t} else if (i >= 0xc0) {\n\t // 110xxxxx => +2 bytes\n\t i = (i & 0x1f) << 16;\n\t i += (this.buf[this.pos+0] << 8)\n\t + (this.buf[this.pos+1] << 0);\n\t this.pos += 2;\n\t //process.stderr.write(\" 2i=\"+i+\"\\n\");\n\t} else if (i >= 0x80) {\n\t // 10xxxxxx => +1 bytes\n\t i = (i & 0x3f) << 8;\n\t i += this.buf[this.pos];\n\t this.pos++;;\n\t //process.stderr.write(\" 1i=\"+i+\"\\n\");\n\t} else {\n\t // 0xxxxxxx => +0 bytes\n\t}\n\n\treturn i;\n }\n\n // ----------\n // Writing\n WriteByte(b) {\n\tthis.buf[this.pos++] = b\n }\n\n WriteChar(b) {\n\tthis.buf[this.pos++] = b.charCodeAt(0)\n }\n\n WriteString(str) {\n\tfor (var i = 0; i < str.length; i++)\n\t this.buf[this.pos++] = str.charCodeAt(i)\n\tthis.buf[this.pos++] = 0\n }\n\n WriteData(buf, len) {\n\tfor (var i = 0; i < len; i++)\n\t this.buf[this.pos++] = buf[i]\n }\n\n WriteStream(stream) {\n\tthis.WriteData(stream.buf, stream.pos)\n }\n\n WriteUint16(u) {\n\t//this.buf.writeInt16LE(u, this.pos);\n\tthis.WriteByte(u&0xff)\n\tthis.WriteByte((u>>8)&0xff)\n }\n\n WriteUint32(u) {\n\tthis.buf.writeInt32LE(u, this.pos);\n\tthis.pos += 4;\n }\n\n// WriteUint7(i) {\n//\tdo {\n//\t this.WriteByte((i & 0x7f) | ((i > 0x80) << 7));\n//\t i >>= 7;\n//\t} while (i > 0);\n// }\n\n WriteUint7(i) {\n\tvar s = 0;\n\tvar X = i;\n\tdo {\n\t s += 7;\n\t X >>= 7;\n\t} while (X > 0);\n\n\tdo {\n\t s -= 7;\n\t this.WriteByte(((i >> s) & 0x7f) + ((s > 0) << 7))\n\t} while (s > 0);\n }\n\n WriteITF8(i) {\n\t// Horrid, ITF8 is unsigned, but we still write signed into it\n\tif (i < 0)\n\t i = (1<<32) + i\n\n\tif (i <= 0x0000007f) {\n\t // 1 byte\n\t this.buf[this.pos++] = i\n\t} else if (i <= 0x00003fff) {\n\t // 2 bytes\n\t this.buf[this.pos++] = 0x80 | Math.floor(i / 256)\n\t this.buf[this.pos++] = i & 0xff;\n\t} else if (i < 0x0001ffff) {\n\t // 3 bytes\n\t this.buf[this.pos++] = 0xc0 | Math.floor(i / 65536)\n\t this.buf[this.pos++] = Math.floor(i / 256) & 0xff\n\t this.buf[this.pos++] = i & 0xff;\n\t} else if (i < 0x0fffffff) {\n\t // 4 bytes\n\t this.buf[this.pos++] = 0xe0 | Math.floor(i / 16777216)\n\t this.buf[this.pos++] = Math.floor(i / 65536) & 0xff\n\t this.buf[this.pos++] = Math.floor(i / 256) & 0xff\n\t this.buf[this.pos++] = i & 0xff;\n\t} else {\n\t // 5 bytes; oddly using 4.5 bytes\n\t this.buf[this.pos++] = 0xf0 | Math.floor(i / 268435456)\n\t this.buf[this.pos++] = Math.floor(i / 1048576) & 0xff\n\t this.buf[this.pos++] = Math.floor(i / 4096) & 0xff\n\t this.buf[this.pos++] = Math.floor(i / 4) & 0xff\n\t this.buf[this.pos++] = i & 0x0f;\n\t}\n }\n\n // ----------\n // Writing from end of buffer going backwards.\n // Needed by rANS codec.\n WriteByteNeg(b) {\n\tthis.buf[--this.pos] = b;\n }\n};\n","/*\n * Copyright (c) 2019-2020 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\nconst IOStream = require(\"./iostream\");\n\n//----------------------------------------------------------------------\n// rANS primitives itself\n//\n// RansGet* is decoder side\n\nfunction RansGetCumulativeFreq(R) {\n return R & 0xfff;\n}\n\nfunction RansGetSymbolFromFreq(C, f) {\n // NOTE: Inefficient.\n // In practice we would implement this via a precomputed\n // lookup table C2S[f]; see RansBuildC2S below.\n var s = 0;\n while (f >= C[s+1])\n\ts++;\n\n return s;\n}\n\nfunction RansBuildC2S(C) {\n var C2S = new Array(0x1000);\n var s = 0;\n for (var f = 0; f < 0x1000; f++) {\n\twhile (f >= C[s+1])\n\t s++;\n\tC2S[f] = s;\n }\n return C2S;\n}\n\nfunction RansAdvanceStep(R, c, f) {\n return f * (R >> 12) + (R & 0xfff) - c;\n}\n\nfunction RansRenorm(src, R) {\n while (R < (1<<23))\n\tR = (R << 8) + src.ReadByte();\n\n return R;\n}\n\n\n// RanEnc* is for encoder\nfunction RansEncInit() {\n return 1<<23;\n}\n\nfunction RansEncFlush(R, dst) {\n dst.WriteByteNeg((R >> 24) & 0xff);\n dst.WriteByteNeg((R >> 16) & 0xff);\n dst.WriteByteNeg((R >> 8) & 0xff);\n dst.WriteByteNeg((R >> 0) & 0xff);\n}\n\nfunction RansEncRenorm(R, dst, freq, scale_bits) {\n var R_max = (((1 << 23) >> scale_bits) << 8) * freq;\n\n while (R >= R_max) {\n\tdst.WriteByteNeg(R & 0xff);\n\tR >>= 8;\n }\n return R;\n}\n\n// Puts a symbol with frequency freq, cumulative freq start\n// and total freq 1< 0) {\n\t rle--;\n\t sym++;\n\t} else {\n\t sym = src.ReadByte();\n\t if (sym == last_sym+1)\n\t\trle = src.ReadByte();\n\t}\n\tlast_sym = sym;\n } while (sym != 0);\n\n // Compute C[] from F[]\n C[0] = 0;\n for (var i = 0; i <= 255; i++)\n\tC[i+1] = C[i] + F[i];\n}\n\nfunction RansDecode0(src, nbytes) {\n // Decode frequencies\n var F = new Array(256);\n var C = new Array(256);\n ReadFrequencies0(src, F, C);\n\n // Fast lookup to avoid slow RansGetSymbolFromFreq\n var C2S = RansBuildC2S(C);\n\n // Initialise rANS state\n var R = new Array(4);\n for (var i = 0; i < 4; i++)\n\tR[i] = src.ReadUint32();\n\n // Main decode loop\n var output = new Buffer.allocUnsafe(nbytes);\n for (var i = 0; i < nbytes; i++) {\n\tvar i4 = i%4;\n\tvar f = RansGetCumulativeFreq(R[i4]);\n\tvar s = C2S[f]; // Equiv to RansGetSymbolFromFreq(C, f);\n\n\toutput[i] = s;\n\tR[i4] = RansAdvanceStep(R[i4], C[s], F[s]);\n\tR[i4] = RansRenorm(src, R[i4]);\n }\n\n return output;\n}\n\n//----------------------------------------------------------------------\n// Order-0 encoder\n\nfunction BuildFrequencies0(src, F) {\n for (var i = 0; i < 256; i++)\n\tF[i] = 0;\n\n for (var i = 0; i < src.length; i++)\n\tF[src[i]]++;\n}\n\nfunction NormaliseFrequencies0(F) {\n // Compute total\n var tot = 0;\n for (var i = 0; i < 256; i++)\n\ttot += F[i];\n\n // Scale total of frequencies to max\n const max = (1<<12);\n var scale = max / tot;\n do {\n\tvar max_val = 0;\n\tvar max_idx = 0;\n\tvar renorm = 0;\n\ttot = 0;\n\tfor (var i = 0; i < 256; i++) {\n\t if (F[i] == 0)\n\t\tcontinue\n\n\t if (max_val < F[i]) {\n\t\tmax_val = F[i]\n\t\tmax_idx = i\n\t }\n\n\t F[i] = Math.floor(F[i] * scale);\n\t if (F[i] == 0)\n\t\tF[i] = 1;\n\n\t tot += F[i];\n\t}\n\n\t// Adjust new tot to ensure it matches.\n\tif (tot < max) {\n\t // Too low, boost the most common symbol\n\t F[max_idx] += max-tot;\n\t} else if (tot-max < F[max_idx]/2 && F[max_idx] > 2) {\n\t // Too high, reduce the common symbol\n\t F[max_idx] -= tot-max;\n\t} else if (tot != max) {\n\t // Much too high, fudge scale and try again.\n\t scale = scale * 0.99\n\t renorm = 1;\n\t}\n } while (renorm)\n}\n\nfunction WriteFrequencies0(out, F) {\n var rle = 0;\n for (var i = 0; i < 256; i++) {\n\tif (!F[i])\n\t continue\n\n\t// Output Symbol if needed and Frequency\n\tif (rle > 0)\n\t rle--\n\telse {\n\t out.WriteByte(i)\n\n\t if (i > 0 && F[i-1] > 0) {\n\t\t// We've encoded two symbol frequencies in a row.\n\t\t// How many more are there? Store that count so\n\t\t// we can avoid writing consecutive symbols.\n\t\tfor (rle = i+1; rle<256 && F[rle]; rle++)\n\t\t ;\n\t\trle -= i+1;\n\n\t\tout.WriteByte(rle);\n\t }\n\t}\n\n\tout.WriteITF8(F[i])\n }\n out.WriteByte(0);\n}\n\nfunction RansEncode0(src) {\n const nbytes = src.length\n var output = new IOStream(\"\", 0, 257*3+9);\n\n output.WriteByte(0); // Order 0\n output.WriteUint32(0); // compressed size: correct later\n output.WriteUint32(0); // uncompressed size: correct later\n\n // Compute frequencies\n var F = new Array(256)\n BuildFrequencies0(src, F)\n NormaliseFrequencies0(F);\n WriteFrequencies0(output, F);\n\n // Compute cumulative frequencies\n var C = new Array(256)\n C[0] = 0;\n for (var i = 1; i < 256; i++)\n\tC[i] = C[i-1] + F[i-1];\n\n // Initialise rANS state\n var R = new Array(4);\n for (var i = 0; i < 4; i++)\n\tR[i] = RansEncInit();\n\n var alloc = Math.floor(nbytes*1.05+100)\n var rans_out = new IOStream(\"\", alloc, alloc)\n\n // Main encode loop\n for (var i = nbytes-1; i >= 0; i--)\n\tR[i%4] = RansEncPut(R[i%4], rans_out, C[src[i]], F[src[i]], 12);\n\n for (var i = 3; i >= 0; i--)\n\tRansEncFlush(R[i], rans_out);\n\n // Stitch blocks together into final output buffer\n var freq_tab = output.pos\n output.buf.writeInt32LE(freq_tab-9 + (rans_out.length - rans_out.pos), 1);\n output.buf.writeInt32LE(nbytes, 5);\n\n return Buffer.concat([output.buf.slice(0, output.pos),\n\t\t\t rans_out.buf.slice(rans_out.pos, rans_out.length)],\n\t\t\t output.pos + rans_out.length - rans_out.pos);\n}\n\n//----------------------------------------------------------------------\n// Order-1 decoder\n\n// Decode a table of order-1 frequences,\n// filling out the F and C arrays.\nfunction ReadFrequencies1(src, F, C) {\n // Initialise; not in the specification - implicit?\n for (var i = 0; i < 256; i++) {\n\tF[i] = new Array(256);\n\tC[i] = new Array(256);\n\tfor (var j = 0; j < 256; j++)\n\t F[i][j] = 0;\n }\n\n var sym = src.ReadByte();\n var last_sym = sym;\n var rle = 0;\n\n // Read F[]\n do {\n\tReadFrequencies0(src, F[sym], C[sym]);\n\n\tif (rle > 0) {\n\t rle--;\n\t sym++;\n\t} else {\n\t sym = src.ReadByte();\n\t if (sym == last_sym+1)\n\t\trle = src.ReadByte();\n\t}\n\tlast_sym = sym;\n } while (sym != 0);\n}\n\nfunction RansDecode1(src, nbytes) {\n // Decode frequencies\n var F = new Array(256);\n var C = new Array(256);\n ReadFrequencies1(src, F, C);\n\n // Fast lookup to avoid slow RansGetSymbolFromFreq\n var C2S = new Array(256);\n for (var i = 0; i < 256; i++)\n\tC2S[i] = RansBuildC2S(C[i]);\n\n // Initialise rANS state\n var R = new Array(4);\n var L = new Array(4);\n for (var j = 0; j < 4; j++) {\n\tR[j] = src.ReadUint32();\n\tL[j] = 0;\n }\n\n // Main decode loop\n var output = new Buffer.allocUnsafe(nbytes);\n var nbytes4 = Math.floor(nbytes/4);\n for (var i = 0; i < nbytes4; i++) {\n\tfor (var j = 0; j < 4; j++) {\n\t var f = RansGetCumulativeFreq(R[j]);\n\n\t //var s = RansGetSymbolFromFreq(C[L[j]], f);\n\t var s = C2S[L[j]][f]; // Precomputed version of above\n\n\t output[i+j*nbytes4] = s;\n\t R[j] = RansAdvanceStep(R[j], C[L[j]][s], F[L[j]][s]);\n\t R[j] = RansRenorm(src, R[j]);\n\t L[j] = s;\n\t}\n }\n\n // Now deal with the remainder if buffer size is not a multiple of 4,\n // using rANS state 3 exclusively. (It'd have been nice to have\n // designed this to just act as if we kept going with a bail out.)\n i = 4*i;\n while (i < nbytes) {\n\tvar f = RansGetCumulativeFreq(R[3]);\n\tvar s = RansGetSymbolFromFreq(C[L[3]], f);\n\toutput[i++] = s;\n\tR[3] = RansAdvanceStep(R[3], C[L[3]][s], F[L[3]][s]);\n\tR[3] = RansRenorm(src, R[3]);\n\tL[3] = s;\n }\n\n return output;\n}\n\n//----------------------------------------------------------------------\n// Order-1 encoder\n\nfunction BuildFrequencies1(src, F, F0) {\n for (var i = 0; i < 256; i++) {\n\tF0[i] = 0;\n\tfor (var j = 0; j < 256; j++)\n\t F[i][j] = 0;\n }\n\n var last = 0;\n for (var i = 0; i < src.length; i++) {\n\tF0[src[i]]++;\n\tF[last][src[i]]++;\n\t//F[last][src[i]]++;\n\tlast = src[i];\n }\n\n // Also accept we'll be starting at 4 points, not just byte 0\n F[0][src[1*(src.length >> 2)]]++;\n F[0][src[2*(src.length >> 2)]]++;\n F[0][src[3*(src.length >> 2)]]++;\n F0[0] += 3;\n}\n\nfunction NormaliseFrequencies1(F, F0) {\n for (var i = 0; i < 256; i++)\n\tif (F0[i])\n\t NormaliseFrequencies0(F[i])\n}\n\nfunction WriteFrequencies1(out, F, F0) {\n var rle = 0;\n var last_sym = 0;\n\n for (var i = 0; i < 256; i++) {\n\tif (!F0[i])\n\t continue\n\n\t// Output Symbol if needed and Frequency\n\tif (rle > 0)\n\t rle--\n\telse {\n\t out.WriteByte(i)\n\n\t if (i > 0 && F0[i-1] > 0) {\n\t\tfor (rle = i+1; rle<256 && F0[rle]; rle++)\n\t\t ;\n\t\trle -= i+1;\n\t\tout.WriteByte(rle);\n\t }\n\t}\n\n\tWriteFrequencies0(out, F[i]);\n }\n out.WriteByte(0);\n}\n\nfunction RansEncode1(src) {\n const nbytes = src.length;\n var output = new IOStream(\"\", 0, 257*257*3+9);\n\n output.WriteByte(1); // Order 0\n output.WriteUint32(0); // compressed size: correct later\n output.WriteUint32(0); // uncompressed size: correct later\n\n // Compute frequencies\n var F0 = new Array(256)\n var F = new Array(256)\n var C = new Array(256)\n for (var i = 0; i < 256; i++) {\n\tF[i] = new Array(256);\n\tC[i] = new Array(256);\n }\n\n BuildFrequencies1(src, F, F0)\n NormaliseFrequencies1(F, F0);\n WriteFrequencies1(output, F, F0);\n\n // Compute cumulative frequencies\n for (var i = 0; i < 256; i++) {\n\tif (!F0[i])\n\t continue;\n\n\tC[i][0] = 0;\n\tfor (var j = 1; j < 256; j++)\n\t C[i][j] = C[i][j-1] + F[i][j-1];\n }\n\n // Initialise rANS state\n var R = new Array(4);\n var L = new Array(4);\n for (var j = 0; j < 4; j++) {\n\tR[j] = RansEncInit();\n\tL[j] = 0;\n }\n var rans_out = new IOStream(\"\", nbytes, nbytes);\n\n // We have 4 rans codecs running in parallel on its own 1/4tr of buffer\n var nbytes4 = Math.floor(nbytes/4);\n var idx = new Array(4);\n var last = new Array(4)\n for (var j = 0; j < 4; j++) {\n\tidx[j] = (j+1)*nbytes4 - 2;\n\tlast[j] = src[idx[j]+1]\n }\n\n // Deal with the remainder if not a multiple of 4\n last[3] = src[nbytes-1];\n for (var i = nbytes-2; i > 4*nbytes4-2; i--) {\n\tR[3] = RansEncPut(R[3], rans_out, C[src[i]][last[3]], F[src[i]][last[3]], 12);\n\tlast[3] = src[i];\n }\n\n // Main encode loop\n while (idx[0] >= 0) {\n\tfor (var j = 3; j >= 0; j--) {\n\t var s = src[idx[j]]\n\t R[j] = RansEncPut(R[j], rans_out, C[s][last[j]], F[s][last[j]], 12);\n\t last[j] = s;\n\t idx[j]--;\n\t}\n }\n\n for (var j = 3; j >= 0; j--) {\n R[j] = RansEncPut(R[j], rans_out, C[0][last[j]], F[0][last[j]], 12)\n }\n\n for (var i = 3; i >= 0; i--)\n\tRansEncFlush(R[i], rans_out);\n\n // Stitch blocks together into final output buffer\n var freq_tab = output.pos;\n output.buf.writeInt32LE(freq_tab-9 + (rans_out.length - rans_out.pos), 1);\n output.buf.writeInt32LE(nbytes, 5);\n\n return Buffer.concat([output.buf.slice(0, output.pos),\n\t\t\t rans_out.buf.slice(rans_out.pos, rans_out.length)],\n\t\t\t output.pos + rans_out.length - rans_out.pos);\n}\n\nmodule.exports = { decode, encode }\n","/*\n * Copyright (c) 2019 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\nconst IOStream = require(\"./iostream\");\n\n//----------------------------------------------------------------------\n// rANS primitives itself\n//\n// RansGet* is decoder side\n\nfunction RansGetCumulativeFreq(R, bits) {\n return R & ((1<= C[s+1])\n\ts++;\n\n //console.error(f, C, s)\n\n return s;\n}\n\nfunction RansBuildC2S(C, bits) {\n var max = 1<= C[s+1])\n\t s++;\n\tC2S[f] = s;\n }\n return C2S;\n}\n\nfunction RansAdvanceStep(R, c, f, bits) {\n return f * (R >> bits) + (R & ((1<> 24) & 0xff);\n dst.WriteByteNeg((R >> 16) & 0xff);\n dst.WriteByteNeg((R >> 8) & 0xff);\n dst.WriteByteNeg((R >> 0) & 0xff);\n}\n\nfunction RansEncRenorm(R, dst, freq, scale_bits) {\n //var R_max = (((1 << 15) >> scale_bits) << 16) * freq;\n var R_max = (1 << (31-scale_bits)) * freq\n\n while (R >= R_max) {\n\tdst.WriteByteNeg((R>>8) & 0xff);\n\tdst.WriteByteNeg(R & 0xff);\n\tR >>= 16;\n }\n return R;\n}\n\n// Puts a symbol with frequency freq, cumulative freq start\n// and total freq 1< 0)\n\t nrle++\n\n if (!nrle) {\n\t// Format cannot cope with zero RLE symbols, so pick one!\n\tnrle = 1;\n\tL[0] = 1;\n }\n\n // Start meta-data as list of symbols to RLE\n var meta = new IOStream(\"\", 0, nrle+1 + src.length)\n meta.WriteByte(nrle)\n for (var i = 0; i < 256; i++)\n\tif (L[i] > 0)\n\t meta.WriteByte(i)\n\n // Step 2: Now apply RLE itself\n var data = new Buffer.allocUnsafe(src.length)\n var dpos = 0\n for (var i = 0; i < src.length; i++) {\n\tdata[dpos++] = src[i]\n\tif (L[src[i]] > 0) {\n\t last = src[i];\n\t var run = 0;\n\t while (i+run+1 < src.length && src[i+run+1] == last)\n\t\trun++;\n\t meta.WriteUint7(run)\n\t i += run\n\t}\n }\n\n // Compress the meta-data\n var cmeta = RansEncode0(meta.buf.slice(0, meta.pos))\n var hdr = new IOStream(\"\", 0, 16)\n hdr.WriteUint7(meta.pos*2) // Uncompressed meta-data length + compressed-bit-flag(0)\n hdr.WriteUint7(dpos) // Length of RLE encoded data\n hdr.WriteUint7(cmeta.length) // Compressed meta-data length\n var meta = Buffer.concat([hdr.buf.slice(0,hdr.pos), cmeta])\n\n return [meta, data.slice(0, dpos)]\n}\n\nfunction DecodeRLEMeta(src) {\n var u_meta_len = src.ReadUint7()\n var rle_len = src.ReadUint7()\n\n // Decode RLE lengths\n if (u_meta_len & 1) {\n\tvar rle_meta = src.ReadData((u_meta_len-1)/2)\n } else {\n\tvar comp_meta_len = src.ReadUint7()\n\tvar rle_meta = src.ReadData(comp_meta_len)\n\trle_meta = RansDecode0(new IOStream(rle_meta), u_meta_len/2)\n }\n\n // Decode list of symbols for which RLE lengths are applied\n var rle_meta = new IOStream(rle_meta)\n var L = new Array(256)\n var n = rle_meta.ReadByte()\n if (n == 0)\n\tn = 256;\n for (var i = 0; i < n; i++)\n\tL[rle_meta.ReadByte()] = 1\n\n return [L, rle_meta, rle_len]\n}\n\nfunction DecodeRLE(buf, L, rle_meta, len) {\n var src = new IOStream(buf);\n\n var out = new Buffer.allocUnsafe(len)\n\n // Expand up buf+meta to out; i = buf index, j = out index\n var j = 0;\n for (var i = 0; j < len; i++) {\n\tvar sym = buf[i];\n\tif (L[sym]) {\n\t var run = rle_meta.ReadUint7()\n\t for (var r = 0; r <= run; r++)\n\t\tout[j++] = sym\n\t} else {\n\t out[j++] = sym\n\t}\n }\n\n return out\n}\n\n//----------------------------------------------------------------------\n// Bit packing\n\nfunction EncodePack(src) {\n // Step 1: identify number of distinct symbols\n var F = new Array(256)\n for (var i = 0; i < 256; i++)\n\tF[i] = 0\n\n for (var i = 0; i < src.length; i++)\n\tF[src[i]]++\n\n var P = new Array(256)\n var nsym = 0;\n for (var i = 0; i < 256; i++)\n\tif (F[i] > 0)\n\t P[i] = nsym++\n\n if (nsym > 16) {\n\t//console.error(\"Too many symbols to pack:\",nsym)\n\treturn\n }\n\n\n // Pack data\n if (nsym <= 1) {\n\t// Constant\n\tvar data = new Buffer.allocUnsafe(0)\n }\n\n else if (nsym <= 2) {\n\t// 1 bit per value\n\tvar data = new Buffer.allocUnsafe(Math.ceil(src.length/8))\n\tvar j = -1\n\tfor (i = 0; i < src.length; i++) {\n\t if (i % 8 == 0)\n\t\tdata[++j] = 0\n\t data[j] += P[src[i]] << (i % 8)\n\t}\n }\n\n else if (nsym <= 4) {\n\t// 2 bits per value\n\tvar data = new Buffer.allocUnsafe(Math.ceil(src.length/4))\n\tvar j = -1\n\tfor (i = 0; i < src.length; i++) {\n\t if (i % 4 == 0)\n\t\tdata[++j] = 0\n\t data[j] += P[src[i]] << ((i % 4) * 2)\n\t}\n }\n\n else {\n\t// 4 bits per value\n\tvar data = new Buffer.allocUnsafe(Math.ceil(src.length/2))\n\tvar j = -1\n\tfor (i = 0; i < src.length; i++) {\n\t if (i % 2 == 0)\n\t\tdata[++j] = 0\n\t data[j] += P[src[i]] << ((i % 2) * 4)\n\t}\n }\n\n\n // Produce pack meta-data\n var meta = new IOStream(\"\", 0, nsym+5)\n meta.WriteByte(nsym)\n var j = 0\n for (var i = 0; i < 256; i++) {\n\tif (F[i] > 0) {\n\t F[i] = j++;\n\t meta.WriteByte(i)\n\t}\n }\n meta.WriteUint7(data.length)\n\n return [meta.buf.slice(0, meta.pos), data]\n}\n\n\n// Pack meta data is the number and value of distinct symbols plus\n// the length of the packed byte stream.\nfunction DecodePackMeta(src) {\n var nsym = src.ReadByte()\n var P = new Array(nsym)\n\n for (var i = 0; i < nsym; i++)\n\tP[i] = src.ReadByte()\n\n var len = src.ReadUint7()\n\n return [P, nsym, len]\n}\n\n// Extract bits from src producing output of length len.\n// Nsym is number of distinct symbols used.\nfunction DecodePack(data, P, nsym, len) {\n var out = new Buffer.allocUnsafe(len)\n var j = 0;\n\n // Constant value\n if (nsym <= 1) {\n\tfor (var i = 0; i < len; i++)\n\t out[i] = P[0]\n }\n\n // 1 bit per value\n else if (nsym <= 2) {\n\tfor (i = 0; i < len; i++) {\n\t if (i % 8 == 0)\n\t\tvar v = data[j++];\n\n\t out[i] = P[v & 1]\n\t v >>= 1\n\t}\n }\n\n // 2 bits per value\n else if (nsym <= 4) {\n\tfor (i = 0; i < len; i++) {\n\t if (i % 4 == 0)\n\t\tvar v = data[j++];\n\n\t out[i] = P[v & 3]\n\t v >>= 2\n\t}\n }\n\n // 4 bits per value\n else if (nsym <= 16) {\n\tfor (i = 0; i < len; i++) {\n\t if (i % 2 == 0)\n\t\tvar v = data[j++];\n\n\t out[i] = P[v & 15]\n\t v >>= 4\n\t}\n }\n\n return out\n}\n\n\n//----------------------------------------------------------------------\n// 4 way interleaving.\n// This is simply 4 rANS streams interleaved to form bytes 0,4,8...,\n// 1,5,9..., 2,6,10... and 3,7,11...\n//\n// It works well when the distributions differ for each of the 4 bytes,\n// for example when compressing a series of 32-bit integers.\n//\n// Maybe make this more general purpose of X* where we specify the stripe\n// size instead of fixing it at 4?\nfunction RansEncodeStripe(hdr, src, N) {\n if (N == 0)\n\tN = 4; // old default\n\n // Split into multiple streams\n var part = new Array(N)\n var ulen = new Array(N)\n for (var s = 0; s < N; s++) {\n\tulen[s] = Math.floor(src.length / N) + ((src.length % N) > s);\n\tpart[s] = new Array(ulen[s])\n }\n\n for (var x = 0, i = 0; i < src.length; i+=N, x++) {\n\tfor (var j = 0; j < N; j++)\n\t if (x < part[j].length)\n\t\tpart[j][x] = src[i+j]\n }\n\n // Compress each part\n var comp = new Array(N)\n var total = 0\n for (var s = 0; s < N; s++) {\n\t// Example: try O0 and O1 and choose best\n\tvar comp0 = encode(part[s], 0)\n\tvar comp1 = encode(part[s], 1)\n\tcomp[s] = (comp1.length < comp0.length) ? comp1 : comp0\n\ttotal += comp[s].length\n }\n\n // Serialise\n var out = new IOStream(\"\", 0, total+5*N+1)\n out.WriteByte(N)\n for (var s = 0; s < N; s++)\n\tout.WriteUint7(comp[s].length)\n\n for (var s = 0; s < N; s++)\n\tout.WriteData(comp[s], comp[s].length)\n\n return out.buf.slice(0, out.buf.pos)\n}\n\nfunction RansDecodeStripe(src, len) {\n var N = src.ReadByte()\n\n // Retrieve lengths\n var clen = new Array(N)\n var ulen = new Array(N)\n for (var j = 0; j < N; j++)\n\tclen[j] = src.ReadUint7()\n\n // Decode streams\n var T = new Array(N);\n for (var j = 0; j < N; j++) {\n\tulen[j] = Math.floor(len / N) + ((len % N) > j)\n\tT[j] = RansDecodeStream(src, ulen[j])\n }\n\n // Transpose\n var out = new Buffer.allocUnsafe(len)\n for (var j = 0; j < N; j++) {\n\tfor (var i = 0; i < ulen[j]; i++) {\n\t out[i*N + j] = T[j][i];\n\t}\n }\n\n return out;\n}\n\n\n//----------------------------------------------------------------------\n// Main rANS entry function: decodes a compressed src and\n// returns the uncompressed buffer.\nfunction decode(src) {\n var stream = new IOStream(src)\n return RansDecodeStream(stream, 0)\n}\n\nfunction RansDecodeStream(stream, n_out) {\n var format = stream.ReadByte();\n var order = format & 1\n var stripe = format & 8\n var nosz = format & 16\n var cat = format & 32\n var rle = format & 64\n var pack = format & 128\n\n if (!nosz)\n\tn_out = stream.ReadUint7();\n\n // N-way interleaving\n if (stripe)\n\treturn RansDecodeStripe(stream, n_out)\n\n // Bit packing\n if (pack) {\n\tvar pack_len = n_out\n\tvar [P, nsym, n_out] = DecodePackMeta(stream)\n }\n\n // Run length encoding\n if (rle) {\n\tvar rle_len = n_out\n\tvar [L, rle_meta, n_out] = DecodeRLEMeta(stream)\n }\n\n // Uncompress data (all, packed or run literals)\n if (cat)\n\tvar buf = stream.ReadData(n_out)\n else if (order == 0)\n\tvar buf = RansDecode0(stream, n_out)\n else\n\tvar buf = RansDecode1(stream, n_out)\n\n // Apply expansion transforms\n if (rle)\n\tbuf = DecodeRLE(buf, L, rle_meta, rle_len)\n\n if (pack)\n\tbuf = DecodePack(buf, P, nsym, pack_len)\n\n return buf\n}\n\nfunction encode(src, format) {\n var hdr = new IOStream(\"\", 0, 10);\n hdr.WriteByte(format);\n\n var order = format & 1\n var stripe= format & 8\n var nosz = format & 16\n var cat = format & 32\n var rle = format & 64\n var pack = format & 128\n\n var N = format>>8\n\n if (!nosz)\n\thdr.WriteUint7(src.length);\n\n if (stripe)\n\treturn Buffer.concat([hdr.buf.slice(0, hdr.pos), RansEncodeStripe(hdr, src, N)])\n\n var pack_meta = new Buffer.alloc(0)\n if (pack)\n\t[pack_meta, src] = EncodePack(src)\n\n var rle_meta = new Buffer.alloc(0)\n if (rle)\n\t[rle_meta, src] = EncodeRLE(src)\n\n if (src.length < 4 && order == 1) {\n\t// Protect against short order-1 data due to RLE/Pack\n\torder = 0\n\thdr.buf[0] &= ~1\n }\n\n if (cat)\n\tvar comp = src\n else if (order == 0)\n\tvar comp = RansEncode0(src)\n else\n\tvar comp = RansEncode1(src)\n\n return Buffer.concat([hdr.buf.slice(0,hdr.pos), pack_meta, rle_meta, comp])\n}\n\n//----------------------------------------------------------------------\n// Order-0 decoder\n\nfunction ReadAlphabet(src) {\n var A = new Array(256)\n for (var i = 0; i < 256; i++)\n\tA[i] = 0;\n\n var rle = 0\n var sym = src.ReadByte()\n var last_sym = sym\n\n do {\n\tA[sym] = 1;\n\tif (rle > 0) {\n\t rle--\n\t sym++\n\t} else {\n\t sym = src.ReadByte()\n\t if (sym == last_sym+1)\n\t\trle = src.ReadByte()\n\t}\n\tlast_sym = sym\n } while (sym != 0)\n\n return A\n}\n\n// Decode a single table of order-0 frequences,\n// filling out the F and C arrays.\nfunction ReadFrequencies0(src, F, C) {\n // Initialise; not in the specification - implicit?\n for (var i = 0; i < 256; i++)\n\tF[i] = 0;\n\n // Fetch alphabet\n var A = ReadAlphabet(src);\n\n // Fetch frequencies for the symbols listed in our alphabet\n for (var i = 0; i < 256; i++) {\n\tif (A[i] > 0)\n\t F[i] = src.ReadUint7()\n }\n\n NormaliseFrequencies0_Shift(F, 12)\n\n // Compute C[] from F[]\n C[0] = 0;\n for (var i = 0; i <= 255; i++)\n\tC[i+1] = C[i] + F[i];\n}\n\nfunction RansDecode0(src, nbytes) {\n // Decode frequencies\n var F = new Array(256);\n var C = new Array(256);\n ReadFrequencies0(src, F, C);\n\n // Fast lookup to avoid slow RansGetSymbolFromFreq\n var C2S = RansBuildC2S(C, 12);\n\n // Initialise rANS state\n var R = new Array(4);\n for (var i = 0; i < 4; i++)\n\tR[i] = src.ReadUint32();\n\n // Main decode loop\n var output = new Buffer.allocUnsafe(nbytes);\n for (var i = 0; i < nbytes; i++) {\n\tvar i4 = i%4;\n\tvar f = RansGetCumulativeFreq(R[i4], 12);\n\tvar s = C2S[f]; // Equiv to RansGetSymbolFromFreq(C, f);\n\n\toutput[i] = s;\n\tR[i4] = RansAdvanceStep(R[i4], C[s], F[s], 12);\n\tR[i4] = RansRenorm(src, R[i4]);\n }\n\n return output;\n}\n\n//----------------------------------------------------------------------\n// Order-0 encoder\n\nfunction BuildFrequencies0(src, F) {\n for (var i = 0; i < 256; i++)\n\tF[i] = 0;\n\n for (var i = 0; i < src.length; i++)\n\tF[src[i]]++;\n}\n\nfunction NormaliseFrequencies0(F, bits) {\n // Compute total\n var tot = 0;\n for (var i = 0; i < 256; i++)\n\ttot += F[i];\n\n // Scale total of frequencies to max\n const max = (1< 2) {\n\t // Too high, reduce the common symbol\n\t F[max_idx] -= tot-max;\n\t} else if (tot != max) {\n\t // Much too high, fudge scale and try again.\n\t scale = max / tot;\n\t renorm = 1;\n\t}\n } while (renorm)\n}\n\nfunction NormaliseFrequencies0_Shift(F, bits) {\n // Compute total and number of bits to shift by\n var tot = 0;\n for (var i = 0; i < 256; i++)\n\ttot += F[i];\n\n if (tot == 0 || tot == (1< 0)\n\t rle--\n\telse {\n\t out.WriteByte(i)\n\n\t if (i > 0 && F[i-1] > 0) {\n\t\t// We've encoded two symbol frequencies in a row.\n\t\t// How many more are there? Store that count so\n\t\t// we can avoid writing consecutive symbols.\n\t\tfor (rle = i+1; rle<256 && F[rle]; rle++)\n\t\t ;\n\t\trle -= i+1;\n\n\t\tout.WriteByte(rle);\n\t }\n\t}\n }\n out.WriteByte(0)\n}\n\nfunction WriteFrequencies0(out, F) {\n WriteAlphabet(out, F)\n\n for (var i = 0; i < 256; i++) {\n\tif (F[i])\n\t out.WriteUint7(F[i])\n }\n}\n\nfunction RansEncode0(src) {\n const nbytes = src.length;\n var output = new IOStream(\"\", 0, 257*3+9);\n\n // Compute frequencies\n var F = new Array(256)\n BuildFrequencies0(src, F)\n var bit_size = Math.ceil(Math.log2(nbytes));\n if (bit_size > 12)\n\tbit_size = 12;\n NormaliseFrequencies0(F, bit_size);\n WriteFrequencies0(output, F);\n NormaliseFrequencies0(F, 12);\n\n // Compute cumulative frequencies\n var C = new Array(256)\n C[0] = 0;\n for (var i = 1; i < 256; i++)\n\tC[i] = C[i-1] + F[i-1];\n\n // Initialise rANS state\n var R = new Array(4);\n for (var i = 0; i < 4; i++)\n\tR[i] = RansEncInit();\n\n // Allow expansion room if trying to compress random data.\n var rans_out = new IOStream(\"\", (nbytes*1.05+100)>>0, (nbytes*1.05+100)>>0);\n\n // Main encode loop\n for (var i = nbytes-1; i >= 0; i--)\n\tR[i%4] = RansEncPut(R[i%4], rans_out, C[src[i]], F[src[i]], 12);\n\n for (var i = 3; i >= 0; i--)\n\tRansEncFlush(R[i], rans_out);\n\n // Stitch blocks together into final output buffer\n //console.error(\"pos=\",rans_out.pos, \" len=\",rans_out.length)\n //console.error(rans_out.buf.slice(rans_out.pos, rans_out.length))\n return Buffer.concat([output.buf.slice(0, output.pos),\n\t\t\t rans_out.buf.slice(rans_out.pos, rans_out.length)],\n\t\t\t output.pos + rans_out.length - rans_out.pos);\n}\n\n//----------------------------------------------------------------------\n// Order-1 decoder\n\n// Decode a table of order-1 frequences,\n// filling out the F and C arrays.\nfunction ReadFrequencies1(src, F, C, shift) {\n // Initialise; not in the specification - implicit?\n for (var i = 0; i < 256; i++) {\n\tF[i] = new Array(256);\n\tC[i] = new Array(256);\n\tfor (var j = 0; j < 256; j++)\n\t F[i][j] = 0;\n }\n\n // Fetch alphabet\n var A = ReadAlphabet(src);\n\n // Read F[]\n for (var i = 0; i < 256; i++) {\n\tif (!A[i])\n\t continue\n\n\tvar run = 0;\n\tfor (var j = 0; j < 256; j++) {\n\t if (!A[j])\n\t\tcontinue\n\n\t if (run > 0) {\n\t\trun--\n\t } else {\n\t\tF[i][j] = src.ReadUint7();\n\t\tif (F[i][j] == 0)\n\t\t run = src.ReadByte();\n\t }\n\t}\n\n\tNormaliseFrequencies0_Shift(F[i], shift)\n\n\t// Compute C[] from F[]\n\tC[i][0] = 0;\n\tfor (var j = 0; j < 256; j++)\n\t C[i][j+1] = C[i][j] + F[i][j];\n }\n}\n\nfunction RansDecode1(src, nbytes) {\n // FIXME: this bit is missing from the RansDecode0 pseudocode.\n\n var comp = src.ReadByte();\n var shift = comp >> 4;\n\n var freq_src = src\n if (comp & 1) {\n\tvar ulen = src.ReadUint7()\n\tvar clen = src.ReadUint7()\n\tvar comp = new IOStream(src.ReadData(clen))\n\tvar freq_src = new IOStream(RansDecode0(comp, ulen));\n }\n\n // Decode frequencies\n var F = new Array(256);\n var C = new Array(256);\n ReadFrequencies1(freq_src, F, C, shift);\n\n // Fast lookup to avoid slow RansGetSymbolFromFreq\n var C2S = new Array(256);\n for (var i = 0; i < 256; i++)\n\t// Could do only for symbols in alphabet?\n\tC2S[i] = RansBuildC2S(C[i], shift);\n\n // Initialise rANS state\n var R = new Array(4);\n var L = new Array(4);\n for (var j = 0; j < 4; j++) {\n\tR[j] = src.ReadUint32();\n\tL[j] = 0;\n }\n\n // Main decode loop\n var output = new Buffer.allocUnsafe(nbytes);\n var nbytes4 = Math.floor(nbytes/4);\n for (var i = 0; i < nbytes4; i++) {\n\tfor (var j = 0; j < 4; j++) {\n\t var f = RansGetCumulativeFreq(R[j], shift);\n\n\t //var s = RansGetSymbolFromFreq(C[L[j]], f);\n\t var s = C2S[L[j]][f]; // Precomputed version of above\n\n\t output[i+j*nbytes4] = s;\n\t R[j] = RansAdvanceStep(R[j], C[L[j]][s], F[L[j]][s], shift);\n\t R[j] = RansRenorm(src, R[j]);\n\t L[j] = s;\n\t}\n }\n\n // Now deal with the remainder if buffer size is not a multiple of 4,\n // using rANS state 3 exclusively. (It'd have been nice to have\n // designed this to just act as if we kept going with a bail out.)\n i = 4*i;\n while (i < nbytes) {\n\tvar f = RansGetCumulativeFreq(R[3], shift);\n\tvar s = RansGetSymbolFromFreq(C[L[3]], f);\n\toutput[i++] = s;\n\tR[3] = RansAdvanceStep(R[3], C[L[3]][s], F[L[3]][s], shift);\n\tR[3] = RansRenorm(src, R[3]);\n\tL[3] = s;\n }\n\n return output;\n}\n\n//----------------------------------------------------------------------\n// Order-1 encoder\n\nfunction BuildFrequencies1(src, F, F0) {\n for (var i = 0; i < 256; i++) {\n\tF0[i] = 0;\n\tfor (var j = 0; j < 256; j++)\n\t F[i][j] = 0;\n }\n\n var last = 0;\n for (var i = 0; i < src.length; i++) {\n\tF0[last]++;\n\tF[last][src[i]]++;\n\tlast = src[i];\n }\n F0[last]++;\n\n // Also accept we'll be starting at 4 points, not just byte 0\n F[0][src[1*(src.length >> 2)]]++;\n F[0][src[2*(src.length >> 2)]]++;\n F[0][src[3*(src.length >> 2)]]++;\n F0[0] += 3;\n}\n\nfunction NormaliseFrequencies1(F, F0, shift) {\n\n for (var i = 0; i < 256; i++) {\n\tif (!F0[i])\n\t continue;\n\n\tvar bit_size = Math.ceil(Math.log2(F0[i]));\n\tif (bit_size > shift)\n\t bit_size = shift;\n\n\tNormaliseFrequencies0(F[i], bit_size)\n }\n}\n\nfunction NormaliseFrequencies1_Shift(F, F0, shift) {\n for (var i = 0; i < 256; i++)\n\tif (F0[i])\n\t NormaliseFrequencies0_Shift(F[i], shift)\n}\n\nfunction WriteFrequencies1(out, F, F0) {\n WriteAlphabet(out, F0)\n\n for (var i = 0; i < 256; i++) {\n\tif (!F0[i])\n\t continue\n\n\tvar run = 0\n\tfor (var j = 0; j < 256; j++) {\n\t if (!F0[j])\n\t\tcontinue\n\n\t if (run) {\n\t\trun--\n\t } else {\n\t\tout.WriteUint7(F[i][j])\n\n\t\tif (!F[i][j]) {\n\t\t // Count how many more zero-freqs we have\n\t\t for (var k = j+1; k < 256; k++) {\n\t\t\tif (!F0[k])\n\t\t\t continue\n\n\t\t\tif (F[i][k] == 0)\n\t\t\t run++\n\t\t\telse\n\t\t\t break\n\t\t }\n\t\t out.WriteByte(run)\n\t\t}\n\t }\n\t}\n }\n}\n\nfunction RansEncode1(src) {\n const nbytes = src.length;\n var output = new IOStream(\"\", 0, 257*257*3+9);\n\n // Compute frequencies\n var F0 = new Array(256)\n var F = new Array(256)\n var C = new Array(256)\n for (var i = 0; i < 256; i++) {\n\tF[i] = new Array(256);\n\tC[i] = new Array(256);\n }\n\n // Frequency precision\n var shift = 12;\n\n BuildFrequencies1(src, F, F0)\n NormaliseFrequencies1(F, F0, shift);\n\n // Store frequencies, possibly compressed\n var freq = new IOStream(\"\", 0, 257*257*3+9);\n\n WriteFrequencies1(freq, F, F0);\n\n var cfreq = RansEncode0(freq.buf.slice(0, freq.pos))\n if (cfreq.length < freq.pos) {\n\toutput.WriteByte(1 | (shift<<4));\n\toutput.WriteUint7(freq.pos)\n\toutput.WriteUint7(cfreq.length)\n\toutput.WriteData(cfreq, cfreq.length);\n } else {\n\toutput.WriteByte(0 | (shift<<4));\n\toutput.WriteData(freq.buf, freq.pos);\n }\n\n // Normalise and compute cumulative frequencies\n NormaliseFrequencies1_Shift(F, F0, shift);\n for (var i = 0; i < 256; i++) {\n\tif (!F0[i])\n\t continue;\n\n\tC[i][0] = 0;\n\tfor (var j = 1; j < 256; j++)\n\t C[i][j] = C[i][j-1] + F[i][j-1];\n }\n\n // Initialise rANS state\n var R = new Array(4);\n var L = new Array(4);\n for (var j = 0; j < 4; j++) {\n\tR[j] = RansEncInit();\n\tL[j] = 0;\n }\n var rans_out = new IOStream(\"\", (nbytes*1.05+100)>>0, (nbytes*1.05+100)>>0);\n\n // We have 4 rans codecs running in parallel on its own 1/4tr of buffer\n var nbytes4 = Math.floor(nbytes/4);\n var idx = new Array(4);\n var last = new Array(4)\n for (var j = 0; j < 4; j++) {\n\tidx[j] = (j+1)*nbytes4 - 2;\n\tlast[j] = src[idx[j]+1]\n }\n\n // Deal with the remainder if not a multiple of 4\n last[3] = src[nbytes-1];\n for (var i = nbytes-2; i > 4*nbytes4-2; i--) {\n\tR[3] = RansEncPut(R[3], rans_out, C[src[i]][last[3]], F[src[i]][last[3]], shift);\n\tlast[3] = src[i];\n }\n\n // Main encode loop\n while (idx[0] >= 0) {\n\tfor (var j = 3; j >= 0; j--) {\n\t var s = src[idx[j]]\n\t R[j] = RansEncPut(R[j], rans_out, C[s][last[j]], F[s][last[j]], shift);\n\t last[j] = s;\n\t idx[j]--;\n\t}\n }\n\n for (var j = 3; j >= 0; j--) {\n R[j] = RansEncPut(R[j], rans_out, C[0][last[j]], F[0][last[j]], shift)\n }\n\n for (var i = 3; i >= 0; i--)\n\tRansEncFlush(R[i], rans_out);\n\n // Stitch blocks together into final output buffer\n return Buffer.concat([output.buf.slice(0, output.pos),\n\t\t\t rans_out.buf.slice(rans_out.pos, rans_out.length)],\n\t\t\t output.pos + rans_out.length - rans_out.pos);\n}\n\nmodule.exports = { decode, encode }\n","/*\n * Copyright (c) 2019 Genome Research Ltd.\n * Author(s): James Bonfield\n *\n * Redistribution and use in source and binary forms, with or without\n * modification, are permitted provided that the following conditions are met:\n *\n * 1. Redistributions of source code must retain the above copyright notice,\n * this list of conditions and the following disclaimer.\n *\n * 2. Redistributions in binary form must reproduce the above\n * copyright notice, this list of conditions and the following\n * disclaimer in the documentation and/or other materials provided\n * with the distribution.\n *\n * 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger\n * Institute nor the names of its contributors may be used to endorse\n * or promote products derived from this software without specific\n * prior written permission.\n *\n * THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS \"AS\n * IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED\n * TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A\n * PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH\n * LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,\n * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT\n * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,\n * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY\n * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT\n * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\n * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n */\n\n// Name tokeniser\n//\n// This is a reference implementation designed to match the\n// written specification as closely as possible. It is *NOT*\n// an efficient implementation, but see comments below.\n\nconst IOStream = require(\"./iostream\");\nconst rans = require(\"./rans4x16\");\nconst arith_gen = require(\"./arith_gen\");\n\nvar arith = new arith_gen()\n\nconst TOK_TYPE = 0\nconst TOK_STRING = 1\nconst TOK_CHAR = 2\nconst TOK_DIGITS0 = 3\nconst TOK_DZLEN = 4\nconst TOK_DUP = 5\nconst TOK_DIFF = 6\nconst TOK_DIGITS = 7\nconst TOK_DELTA = 8\nconst TOK_DELTA0 = 9\nconst TOK_MATCH = 10\nconst TOK_NOP = 11\nconst TOK_END = 12\n\n//----------------------------------------------------------------------\n// Token byte streams\nfunction DecodeTokenByteStreams(src, in_size, use_arith, nnames) {\n var t = -1\n\n var B = new Array(256)\n\n while (!src.EOF()) {\n\tvar ttype = src.ReadByte()\n\tvar tok_new = ttype & 128\n\tvar tok_dup = ttype & 64\n\tvar type = ttype & 63\n\n\tif (tok_new) {\n\t t++\n\t B[t] = new Array(13)\n\t}\n\n\tif (type != TOK_TYPE && tok_new) {\n\t var M = new Array(nnames-1).fill(TOK_MATCH)\n\t B[t][TOK_TYPE] = new IOStream(Buffer.from([type].concat(M)))\n }\n\n\tif (tok_dup) {\n\t var dup_pos = src.ReadByte()\n\t var dup_type = src.ReadByte()\n\t B[t][type] = new IOStream(B[dup_pos][dup_type].buf)\n\t} else {\n\t var clen = src.ReadUint7()\n\t var data = src.ReadData(clen)\n\n\t if (use_arith)\n\t\tB[t][type] = arith.decode(data)\n\t else\n\t\tB[t][type] = rans.decode(data)\n\t B[t][type] = new IOStream(B[t][type])\n\t}\n }\n\n return B\n}\n\n//----------------------------------------------------------------------\n// Token decode\nfunction LeftPadNumber(val, len) {\n var str = val+\"\"\n while (str.length < len)\n\tstr = \"0\" + str\n\n return str\n}\n\nfunction DecodeSingleName(B, N, T, n) {\n var type = B[0][TOK_TYPE].ReadByte()\n var dist = B[0][type].ReadUint32()\n var m = n - dist\n\n if (type == TOK_DUP) {\n\tN[n] = N[m]\n\tT[n] = T[m]\n\treturn N[n]\n }\n \n var t = 1\n N[n] = \"\"\n T[n] = new Array(256)\n do {\n\ttype = B[t][TOK_TYPE].ReadByte()\n\n\tswitch(type) {\n\tcase TOK_CHAR:\n\t T[n][t] = B[t][TOK_CHAR].ReadChar()\n\t break\n\n\tcase TOK_STRING:\n\t T[n][t] = B[t][TOK_STRING].ReadString()\n\t break\n\t\n\tcase TOK_DIGITS:\n\t T[n][t] = B[t][TOK_DIGITS].ReadUint32()\n\t break\n\n\tcase TOK_DIGITS0:\n\t var d = B[t][TOK_DIGITS0].ReadUint32()\n\t var l = B[t][TOK_DZLEN].ReadByte()\n\t T[n][t] = LeftPadNumber(d, l)\n\t break\n\n\tcase TOK_DELTA:\n\t T[n][t] = (T[m][t]>>0) + B[t][TOK_DELTA].ReadByte()\n\t break\n\n\tcase TOK_DELTA0:\n\t var d = (T[m][t]>>0) + B[t][TOK_DELTA0].ReadByte()\n\t var l = T[m][t].length\n\t T[n][t] = LeftPadNumber(d, l)\n\t break\n\n\tcase TOK_MATCH:\n\t T[n][t] = T[m][t]\n\t break\n\n\tdefault:\n\t T[n][t] = \"\"\n\t break\n\t}\n\n\tN[n] += T[n][t++]\n } while (type != TOK_END)\n\n return N[n]\n}\n\n//----------------------------------------------------------------------\n// Main tokeniser decode entry function: decodes a compressed src and\n// returns the uncompressed buffer.\nfunction decode(src, len, separator) {\n var src = new IOStream(src)\n var ulen = src.ReadUint32()\n var nnames = src.ReadUint32()\n var use_arith = src.ReadByte()\n\n var B = DecodeTokenByteStreams(src, len, use_arith, nnames)\n var N = new Array(nnames)\n var T = new Array(nnames)\n\n var str = \"\"\n if (typeof separator === 'undefined')\n\tseparator = '\\n'\n for (var i = 0; i < nnames; i++)\n\tstr += DecodeSingleName(B, N, T, i) + separator\n\n return str\n}\n\n//----------------------------------------------------------------------\n// Main tokeniser encode function\n\n// Encoder is trickier than decode as we have a lot of decisions to make.\n// However here we just make a simple guess without anything complex,\n// to demonstrate the basic idea. See the C implementation for further\n// expansion on this.\nfunction encode(src, use_arith) {\n // Convert buffer to array of names\n var str = src.toString()\n if (str[str.length-1] == '\\n')\n\tstr = str.substring(0,str.length-1)\n var names = str.split(\"\\n\")\n\n var out = new IOStream(\"\", 0, str.length*2 + 10000) // guess max size\n out.WriteUint32(str.length)\n out.WriteUint32(names.length)\n out.WriteByte(use_arith)\n\n // Tokenise names\n var T = new Array(names.length)\n var H = {}\n var F = new Array(256).fill(0) // DELTA vs DIGIT frequency\n var max_tok = 0\n var max_len = 0\n for (var i = 0; i < names.length; i++) {\n\tvar [ntok,len] = TokeniseName(T, H, F, names[i], i)\n\tif (max_tok < ntok)\n\t max_tok = ntok\n\tif (max_len < len)\n\t max_len = len\n }\n\n // Convert tokens to byte streams and serialise\n for (var tnum = 0; tnum < max_tok; tnum++) {\n\tvar B = new Array(TOK_END+1)\n\tfor (var type = 0; type <= TOK_END; type++)\n\t B[type] = new IOStream(\"\", 0, names.length * max_len)\n\n\tFillByteStreams(B, T, tnum, names, max_tok, max_len)\n\tSerialiseByteStreams(B, tnum, use_arith, out)\n }\n\n return out.buf.slice(0, out.pos)\n}\n\nfunction FillByteStreams(B, T, tnum, names, max_tok, max_len) {\n // Create byte streams B[]\n for (var n = 0; n < names.length; n++) {\n\tif (tnum > 0 && T[n][0].type == TOK_DUP)\n\t continue\n\n\tif (!T[n][tnum])\n\t continue\n\n\tB[TOK_TYPE].WriteByte(T[n][tnum].type)\n\n\tswitch (T[n][tnum].type) {\n\tcase TOK_DIFF:\n\t B[TOK_DIFF].WriteUint32(T[n][tnum].val)\n\t break\n\n\tcase TOK_DUP:\n\t B[TOK_DUP].WriteUint32(T[n][tnum].val)\n\t break\n\n\tcase TOK_STRING:\n\t B[TOK_STRING].WriteString(T[n][tnum].val)\n\t break\n\n\tcase TOK_CHAR:\n\t B[TOK_CHAR].WriteChar(T[n][tnum].val)\n\t break\n\n\tcase TOK_DIGITS:\n\t B[TOK_DIGITS].WriteUint32(T[n][tnum].val)\n\t break\n\n\tcase TOK_DIGITS0:\n\t B[TOK_DIGITS0].WriteUint32(T[n][tnum].val)\n\t B[TOK_DZLEN].WriteByte(T[n][tnum].val.length)\n\t break\n\n\tcase TOK_DELTA:\n\t B[T[n][tnum].type].WriteByte(T[n][tnum].val)\n\t break\n\n\tcase TOK_DELTA0:\n\t B[T[n][tnum].type].WriteByte(T[n][tnum].val)\n\t break\n\t}\n }\n}\n\nfunction SerialiseByteStreams(B, tnum, use_arith, out) {\n // Compress and serialise byte streams B[]\n for (var type = 0; type <= TOK_END; type++) {\n\tif (B[type].pos <= 0)\n\t continue\n\n\tout.WriteByte(type + ((type == 0) ? 128 : 0))\n\n\t// IOStream to sized buffer\n\tB[type] = B[type].buf.slice(0, B[type].pos)\n\tvar comp = try_compress(B[type], use_arith)\n\n\tout.WriteUint7(comp.length)\n\tout.WriteData(comp, comp.length)\n }\n}\n\nfunction try_compress(src, use_arith) {\n var best = 1<<30\n var comp\n\n var methods = [0, 1, 64, 65, 128, 129, 193+8]\n for (var i in methods) {\n\tvar lvl = methods[i]\n\tif ((lvl & 1) && src.length < 100)\n\t continue\n\n\tif ((lvl & 8) && (src.length % 4) != 0)\n\t continue\n\n\ttry {\n\t var tmp = use_arith\n\t\t? arith.encode(src, lvl)\n\t\t: rans.encode(src, lvl)\n\t} catch (e) {\n\t var tmp = 0\n\t}\n\tif (tmp && best > tmp.length) {\n\t best = tmp.length\n\t comp = tmp\n\t}\n }\n\n return comp\n}\n\nfunction TokeniseName(T, H, F, name, n) {\n var max_len = 0\n\n // Always compare against last name only\n var p = n-1\n T[n] = new Array(256)\n\n if (H[name]) {\n\t//console.error(name,H[name],n)\n\tT[n][0] = {\n\t type: TOK_DUP,\n\t val: n - H[name]\n\t}\n } else {\n\tT[n][0] = {\n\t type: TOK_DIFF,\n\t val: n == 0 ? 0 : 1\n\t}\n }\n\n H[name] = n\n\n // Splits on alphanumerics, punctuation\n var tok = name.match(/([a-zA-Z0-9]{1,9})|([^a-zA-Z0-9]+)/g)\n for (var i = 0; i < tok.length; i++) {\n\tvar t = i+1 // token 0 = DIFF vs DUP\n\tvar type = TOK_STRING\n\tvar val = tok[i]\n\tif (tok[i].match(/^0+[0-9]*$/g))\n\t type = TOK_DIGITS0\n\telse if (tok[i].match(/^[0-9]+$/g))\n\t type = TOK_DIGITS\n\telse if (tok[i].length == 1)\n\t type = TOK_CHAR\n\n\tif (p >= 0 && T[p][t]) {\n\t if (T[p][t].str == tok[i]) {\n\t\ttype = TOK_MATCH\n\t\tval = \"\"\n\t } else if (T[p][t].type == TOK_DIGITS || T[p][t].type == TOK_DELTA) {\n\t\tvar d = val - T[p][t].str;\n\t\tF[t]++\n\t\tif (d >= 0 && d < 256 && F[t] > n/2) {\n\t\t type = TOK_DELTA\n\t\t val = d\n\t\t}\n\t } else if ((T[p][t].type == TOK_DIGITS0 || T[p][t].type == TOK_DELTA0)\n\t\t && T[p][t].str.length == val.length) {\n\t\tvar d = val - T[p][t].str;\n\t\tF[t]++\n\t\tif (d >= 0 && d < 256 && F[t] > n/2) {\n\t\t type = TOK_DELTA0\n\t\t val = d\n\t\t}\n\t }\n\t}\n\n\tT[n][t] = {\n\t str: tok[i],\n\t val: val,\n\t type: type\n\t}\n\n\tif (max_len < T[n][t].val.length+3) // +3 for integers; 5 -> (Uint32)5\n\t max_len = T[n][t].val.length+3\n\n\t//console.error(t,T[n][t])\n }\n T[n][++t] = {\n\ttype: TOK_END\n }\n\n return [t+1, max_len]\n}\n\nmodule.exports = { encode, decode }\n","/*\nbzip2.js - a small bzip2 decompression implementation\n\nCopyright 2011 by antimatter15 (antimatter15@gmail.com)\n\nBased on micro-bunzip by Rob Landley (rob@landley.net).\n\nBased on bzip2 decompression code by Julian R Seward (jseward@acm.org),\nwhich also acknowledges contributions by Mike Burrows, David Wheeler,\nPeter Fenwick, Alistair Moffat, Radford Neal, Ian H. Witten,\nRobert Sedgewick, and Jon L. Bentley.\n\nI hereby release this code under the GNU Library General Public License\n(LGPL) version 2, available at http://www.gnu.org/copyleft/lgpl.html\n*/\n\nvar bzip2 = {};\n\nbzip2.array = function (bytes) {\n var bit = 0,\n byte = 0;\n var BITMASK = [0, 0x01, 0x03, 0x07, 0x0F, 0x1F, 0x3F, 0x7F, 0xFF];\n return function (n) {\n var result = 0;\n while (n > 0) {\n var left = 8 - bit;\n if (n >= left) {\n result <<= left;\n result |= (BITMASK[left] & bytes[byte++]);\n bit = 0;\n n -= left;\n } else {\n result <<= n;\n result |= ((bytes[byte] & (BITMASK[n] << (8 - n - bit))) >> (8 - n - bit));\n bit += n;\n n = 0;\n }\n }\n return result\n }\n}\n\nbzip2.simple = function (bits) {\n var size = bzip2.header(bits);\n var all, chunk, chunks = [];\n var index = 0;\n do {\n //all += chunk;\n chunk = bzip2.decompress(bits, size);\n //all.set(chunk, index);\n if (chunk != -1) {\n chunks.push(chunk);\n index += chunk.byteLength;\n }\n } while (chunk != -1);\n all = new Uint8Array(index);\n index = 0;\n for (var i = 0; i < chunks.length; ++i) {\n chunk = chunks[i];\n all.set(chunk, index);\n index += chunk.byteLength;\n }\n return all;\n}\n\nbzip2.header = function (bits) {\n if (bits(8 * 3) != 4348520)\n throw \"No magic number found\";\n var i = bits(8) - 48;\n if (i < 1 || i > 9)\n throw \"Not a BZIP archive\";\n return i;\n};\n\n//takes a function for reading the block data (starting with 0x314159265359)\n//a block size (0-9) (optional, defaults to 9)\n//a length at which to stop decompressing and return the output\nbzip2.decompress = function (bits, size, len) {\n var MAX_HUFCODE_BITS = 20;\n var MAX_SYMBOLS = 258;\n var SYMBOL_RUNA = 0;\n var SYMBOL_RUNB = 1;\n var GROUP_SIZE = 50;\n\n var bufsize = 100000 * 9;\n for (var h = '', i = 0; i < 6; i++)\n h += bits(8).toString(16);\n if (h == \"177245385090\")\n return -1; //last block\n if (h != \"314159265359\")\n throw \"eek not valid bzip data\";\n bits(32); //ignore CRC codes\n if (bits(1))\n throw \"unsupported obsolete version\";\n var origPtr = bits(24);\n if (origPtr > bufsize)\n throw \"Initial position larger than buffer size\";\n var t = bits(16);\n var symToByte = new Uint8Array(256),\n symTotal = 0;\n for (i = 0; i < 16; i++) {\n if (t & (1 << (15 - i))) {\n var k = bits(16);\n for (j = 0; j < 16; j++) {\n if (k & (1 << (15 - j))) {\n symToByte[symTotal++] = (16 * i) + j;\n }\n }\n }\n }\n\n var groupCount = bits(3);\n if (groupCount < 2 || groupCount > 6)\n throw \"another error\";\n var nSelectors = bits(15);\n if (nSelectors == 0)\n throw \"meh\";\n var mtfSymbol = []; //TODO: possibly replace JS array with typed arrays\n for (var i = 0; i < groupCount; i++)\n mtfSymbol[i] = i;\n var selectors = new Uint8Array(32768);\n\n for (var i = 0; i < nSelectors; i++) {\n for (var j = 0; bits(1); j++)\n if (j >= groupCount)\n throw \"whoops another error\";\n var uc = mtfSymbol[j];\n mtfSymbol.splice(j, 1); //this is a probably inefficient MTF transform\n mtfSymbol.splice(0, 0, uc);\n selectors[i] = uc;\n }\n\n var symCount = symTotal + 2;\n var groups = [];\n for (var j = 0; j < groupCount; j++) {\n var length = new Uint8Array(MAX_SYMBOLS),\n temp = new Uint8Array(MAX_HUFCODE_BITS + 1);\n t = bits(5); //lengths\n for (var i = 0; i < symCount; i++) {\n while (true) {\n if (t < 1 || t > MAX_HUFCODE_BITS)\n throw \"I gave up a while ago on writing error messages\";\n if (!bits(1))\n break;\n if (!bits(1))\n t++;\n else\n t--;\n }\n length[i] = t;\n }\n var minLen, maxLen;\n minLen = maxLen = length[0];\n for (var i = 1; i < symCount; i++) {\n if (length[i] > maxLen)\n maxLen = length[i];\n else if (length[i] < minLen)\n minLen = length[i];\n }\n var hufGroup;\n hufGroup = groups[j] = {};\n hufGroup.permute = new Uint32Array(MAX_SYMBOLS);\n hufGroup.limit = new Uint32Array(MAX_HUFCODE_BITS + 1);\n hufGroup.base = new Uint32Array(MAX_HUFCODE_BITS + 1);\n hufGroup.minLen = minLen;\n hufGroup.maxLen = maxLen;\n var base = hufGroup.base.subarray(1);\n var limit = hufGroup.limit.subarray(1);\n var pp = 0;\n for (var i = minLen; i <= maxLen; i++)\n for (var t = 0; t < symCount; t++)\n if (length[t] == i)\n hufGroup.permute[pp++] = t;\n for (i = minLen; i <= maxLen; i++)\n temp[i] = limit[i] = 0;\n for (i = 0; i < symCount; i++)\n temp[length[i]]++;\n pp = t = 0;\n for (i = minLen; i < maxLen; i++) {\n pp += temp[i];\n limit[i] = pp - 1;\n pp <<= 1;\n base[i + 1] = pp - (t += temp[i]);\n }\n limit[maxLen] = pp + temp[maxLen] - 1;\n base[minLen] = 0;\n }\n var byteCount = new Uint32Array(256);\n for (var i = 0; i < 256; i++)\n mtfSymbol[i] = i;\n var runPos, count, symCount, selector;\n runPos = count = symCount = selector = 0;\n var buf = new Uint32Array(bufsize);\n while (true) {\n if (!(symCount--)) {\n symCount = GROUP_SIZE - 1;\n if (selector >= nSelectors)\n throw \"meow i'm a kitty, that's an error\";\n hufGroup = groups[selectors[selector++]];\n base = hufGroup.base.subarray(1);\n limit = hufGroup.limit.subarray(1);\n }\n i = hufGroup.minLen;\n j = bits(i);\n while (true) {\n if (i > hufGroup.maxLen)\n throw \"rawr i'm a dinosaur\";\n if (j <= limit[i])\n break;\n i++;\n j = (j << 1) | bits(1);\n }\n j -= base[i];\n if (j < 0 || j >= MAX_SYMBOLS)\n throw \"moo i'm a cow\";\n var nextSym = hufGroup.permute[j];\n if (nextSym == SYMBOL_RUNA || nextSym == SYMBOL_RUNB) {\n if (!runPos) {\n runPos = 1;\n t = 0;\n }\n if (nextSym == SYMBOL_RUNA)\n t += runPos;\n else\n t += 2 * runPos;\n runPos <<= 1;\n continue;\n }\n if (runPos) {\n runPos = 0;\n if (count + t >= bufsize)\n throw \"Boom.\";\n uc = symToByte[mtfSymbol[0]];\n byteCount[uc] += t;\n while (t--)\n buf[count++] = uc;\n }\n if (nextSym > symTotal)\n break;\n if (count >= bufsize)\n throw \"I can't think of anything. Error\";\n i = nextSym - 1;\n uc = mtfSymbol[i];\n mtfSymbol.splice(i, 1);\n mtfSymbol.splice(0, 0, uc);\n uc = symToByte[uc];\n byteCount[uc]++;\n buf[count++] = uc;\n }\n if (origPtr < 0 || origPtr >= count)\n throw \"I'm a monkey and I'm throwing something at someone, namely you\";\n var j = 0;\n for (var i = 0; i < 256; i++) {\n k = j + byteCount[i];\n byteCount[i] = j;\n j = k;\n }\n for (var i = 0; i < count; i++) {\n uc = buf[i] & 0xff;\n buf[byteCount[uc]] |= (i << 8);\n byteCount[uc]++;\n }\n var pos = 0,\n current = 0,\n run = 0;\n if (count) {\n pos = buf[origPtr];\n current = (pos & 0xff);\n pos >>= 8;\n run = -1;\n }\n count = count;\n var output = new Uint8Array(bufsize);\n var copies, previous, outbyte;\n var index = 0;\n if (!len)\n len = Infinity;\n while (count) {\n count--;\n previous = current;\n pos = buf[pos];\n current = pos & 0xff;\n pos >>= 8;\n if (run++ == 3) {\n copies = current;\n outbyte = previous;\n current = -1;\n } else {\n copies = 1;\n outbyte = current;\n }\n while (copies--) {\n //output += (String.fromCharCode(outbyte));\n output[index++] = outbyte;\n //index++;\n if (!--len)\n return output;\n }\n if (current != previous)\n run = 0;\n }\n //return output;\n //return output.subarray(0,index-1);\n return output.subarray(0, index);\n}\n\nmodule.exports = bzip2;\n","var charenc = {\n // UTF-8 encoding\n utf8: {\n // Convert a string to a byte array\n stringToBytes: function(str) {\n return charenc.bin.stringToBytes(unescape(encodeURIComponent(str)));\n },\n\n // Convert a byte array to a string\n bytesToString: function(bytes) {\n return decodeURIComponent(escape(charenc.bin.bytesToString(bytes)));\n }\n },\n\n // Binary encoding\n bin: {\n // Convert a string to a byte array\n stringToBytes: function(str) {\n for (var bytes = [], i = 0; i < str.length; i++)\n bytes.push(str.charCodeAt(i) & 0xFF);\n return bytes;\n },\n\n // Convert a byte array to a string\n bytesToString: function(bytes) {\n for (var str = [], i = 0; i < bytes.length; i++)\n str.push(String.fromCharCode(bytes[i]));\n return str.join('');\n }\n }\n};\n\nmodule.exports = charenc;\n","(function() {\n var base64map\n = 'ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/',\n\n crypt = {\n // Bit-wise rotation left\n rotl: function(n, b) {\n return (n << b) | (n >>> (32 - b));\n },\n\n // Bit-wise rotation right\n rotr: function(n, b) {\n return (n << (32 - b)) | (n >>> b);\n },\n\n // Swap big-endian to little-endian and vice versa\n endian: function(n) {\n // If number given, swap endian\n if (n.constructor == Number) {\n return crypt.rotl(n, 8) & 0x00FF00FF | crypt.rotl(n, 24) & 0xFF00FF00;\n }\n\n // Else, assume array and swap all items\n for (var i = 0; i < n.length; i++)\n n[i] = crypt.endian(n[i]);\n return n;\n },\n\n // Generate an array of any length of random bytes\n randomBytes: function(n) {\n for (var bytes = []; n > 0; n--)\n bytes.push(Math.floor(Math.random() * 256));\n return bytes;\n },\n\n // Convert a byte array to big-endian 32-bit words\n bytesToWords: function(bytes) {\n for (var words = [], i = 0, b = 0; i < bytes.length; i++, b += 8)\n words[b >>> 5] |= bytes[i] << (24 - b % 32);\n return words;\n },\n\n // Convert big-endian 32-bit words to a byte array\n wordsToBytes: function(words) {\n for (var bytes = [], b = 0; b < words.length * 32; b += 8)\n bytes.push((words[b >>> 5] >>> (24 - b % 32)) & 0xFF);\n return bytes;\n },\n\n // Convert a byte array to a hex string\n bytesToHex: function(bytes) {\n for (var hex = [], i = 0; i < bytes.length; i++) {\n hex.push((bytes[i] >>> 4).toString(16));\n hex.push((bytes[i] & 0xF).toString(16));\n }\n return hex.join('');\n },\n\n // Convert a hex string to a byte array\n hexToBytes: function(hex) {\n for (var bytes = [], c = 0; c < hex.length; c += 2)\n bytes.push(parseInt(hex.substr(c, 2), 16));\n return bytes;\n },\n\n // Convert a byte array to a base-64 string\n bytesToBase64: function(bytes) {\n for (var base64 = [], i = 0; i < bytes.length; i += 3) {\n var triplet = (bytes[i] << 16) | (bytes[i + 1] << 8) | bytes[i + 2];\n for (var j = 0; j < 4; j++)\n if (i * 8 + j * 6 <= bytes.length * 8)\n base64.push(base64map.charAt((triplet >>> 6 * (3 - j)) & 0x3F));\n else\n base64.push('=');\n }\n return base64.join('');\n },\n\n // Convert a base-64 string to a byte array\n base64ToBytes: function(base64) {\n // Remove non-base-64 characters\n base64 = base64.replace(/[^A-Z0-9+\\/]/ig, '');\n\n for (var bytes = [], i = 0, imod4 = 0; i < base64.length;\n imod4 = ++i % 4) {\n if (imod4 == 0) continue;\n bytes.push(((base64map.indexOf(base64.charAt(i - 1))\n & (Math.pow(2, -2 * imod4 + 8) - 1)) << (imod4 * 2))\n | (base64map.indexOf(base64.charAt(i)) >>> (6 - imod4 * 2)));\n }\n return bytes;\n }\n };\n\n module.exports = crypt;\n})();\n","/*!\n * Determine if an object is a Buffer\n *\n * @author Feross Aboukhadijeh \n * @license MIT\n */\n\n// The _isBuffer check is for Safari 5-7 support, because it's missing\n// Object.prototype.constructor. Remove this eventually\nmodule.exports = function (obj) {\n return obj != null && (isBuffer(obj) || isSlowBuffer(obj) || !!obj._isBuffer)\n}\n\nfunction isBuffer (obj) {\n return !!obj.constructor && typeof obj.constructor.isBuffer === 'function' && obj.constructor.isBuffer(obj)\n}\n\n// For Node v0.10 support. Remove this eventually.\nfunction isSlowBuffer (obj) {\n return typeof obj.readFloatLE === 'function' && typeof obj.slice === 'function' && isBuffer(obj.slice(0, 0))\n}\n","(function(){\r\n var crypt = require('crypt'),\r\n utf8 = require('charenc').utf8,\r\n isBuffer = require('is-buffer'),\r\n bin = require('charenc').bin,\r\n\r\n // The core\r\n md5 = function (message, options) {\r\n // Convert to byte array\r\n if (message.constructor == String)\r\n if (options && options.encoding === 'binary')\r\n message = bin.stringToBytes(message);\r\n else\r\n message = utf8.stringToBytes(message);\r\n else if (isBuffer(message))\r\n message = Array.prototype.slice.call(message, 0);\r\n else if (!Array.isArray(message) && message.constructor !== Uint8Array)\r\n message = message.toString();\r\n // else, assume byte array already\r\n\r\n var m = crypt.bytesToWords(message),\r\n l = message.length * 8,\r\n a = 1732584193,\r\n b = -271733879,\r\n c = -1732584194,\r\n d = 271733878;\r\n\r\n // Swap endian\r\n for (var i = 0; i < m.length; i++) {\r\n m[i] = ((m[i] << 8) | (m[i] >>> 24)) & 0x00FF00FF |\r\n ((m[i] << 24) | (m[i] >>> 8)) & 0xFF00FF00;\r\n }\r\n\r\n // Padding\r\n m[l >>> 5] |= 0x80 << (l % 32);\r\n m[(((l + 64) >>> 9) << 4) + 14] = l;\r\n\r\n // Method shortcuts\r\n var FF = md5._ff,\r\n GG = md5._gg,\r\n HH = md5._hh,\r\n II = md5._ii;\r\n\r\n for (var i = 0; i < m.length; i += 16) {\r\n\r\n var aa = a,\r\n bb = b,\r\n cc = c,\r\n dd = d;\r\n\r\n a = FF(a, b, c, d, m[i+ 0], 7, -680876936);\r\n d = FF(d, a, b, c, m[i+ 1], 12, -389564586);\r\n c = FF(c, d, a, b, m[i+ 2], 17, 606105819);\r\n b = FF(b, c, d, a, m[i+ 3], 22, -1044525330);\r\n a = FF(a, b, c, d, m[i+ 4], 7, -176418897);\r\n d = FF(d, a, b, c, m[i+ 5], 12, 1200080426);\r\n c = FF(c, d, a, b, m[i+ 6], 17, -1473231341);\r\n b = FF(b, c, d, a, m[i+ 7], 22, -45705983);\r\n a = FF(a, b, c, d, m[i+ 8], 7, 1770035416);\r\n d = FF(d, a, b, c, m[i+ 9], 12, -1958414417);\r\n c = FF(c, d, a, b, m[i+10], 17, -42063);\r\n b = FF(b, c, d, a, m[i+11], 22, -1990404162);\r\n a = FF(a, b, c, d, m[i+12], 7, 1804603682);\r\n d = FF(d, a, b, c, m[i+13], 12, -40341101);\r\n c = FF(c, d, a, b, m[i+14], 17, -1502002290);\r\n b = FF(b, c, d, a, m[i+15], 22, 1236535329);\r\n\r\n a = GG(a, b, c, d, m[i+ 1], 5, -165796510);\r\n d = GG(d, a, b, c, m[i+ 6], 9, -1069501632);\r\n c = GG(c, d, a, b, m[i+11], 14, 643717713);\r\n b = GG(b, c, d, a, m[i+ 0], 20, -373897302);\r\n a = GG(a, b, c, d, m[i+ 5], 5, -701558691);\r\n d = GG(d, a, b, c, m[i+10], 9, 38016083);\r\n c = GG(c, d, a, b, m[i+15], 14, -660478335);\r\n b = GG(b, c, d, a, m[i+ 4], 20, -405537848);\r\n a = GG(a, b, c, d, m[i+ 9], 5, 568446438);\r\n d = GG(d, a, b, c, m[i+14], 9, -1019803690);\r\n c = GG(c, d, a, b, m[i+ 3], 14, -187363961);\r\n b = GG(b, c, d, a, m[i+ 8], 20, 1163531501);\r\n a = GG(a, b, c, d, m[i+13], 5, -1444681467);\r\n d = GG(d, a, b, c, m[i+ 2], 9, -51403784);\r\n c = GG(c, d, a, b, m[i+ 7], 14, 1735328473);\r\n b = GG(b, c, d, a, m[i+12], 20, -1926607734);\r\n\r\n a = HH(a, b, c, d, m[i+ 5], 4, -378558);\r\n d = HH(d, a, b, c, m[i+ 8], 11, -2022574463);\r\n c = HH(c, d, a, b, m[i+11], 16, 1839030562);\r\n b = HH(b, c, d, a, m[i+14], 23, -35309556);\r\n a = HH(a, b, c, d, m[i+ 1], 4, -1530992060);\r\n d = HH(d, a, b, c, m[i+ 4], 11, 1272893353);\r\n c = HH(c, d, a, b, m[i+ 7], 16, -155497632);\r\n b = HH(b, c, d, a, m[i+10], 23, -1094730640);\r\n a = HH(a, b, c, d, m[i+13], 4, 681279174);\r\n d = HH(d, a, b, c, m[i+ 0], 11, -358537222);\r\n c = HH(c, d, a, b, m[i+ 3], 16, -722521979);\r\n b = HH(b, c, d, a, m[i+ 6], 23, 76029189);\r\n a = HH(a, b, c, d, m[i+ 9], 4, -640364487);\r\n d = HH(d, a, b, c, m[i+12], 11, -421815835);\r\n c = HH(c, d, a, b, m[i+15], 16, 530742520);\r\n b = HH(b, c, d, a, m[i+ 2], 23, -995338651);\r\n\r\n a = II(a, b, c, d, m[i+ 0], 6, -198630844);\r\n d = II(d, a, b, c, m[i+ 7], 10, 1126891415);\r\n c = II(c, d, a, b, m[i+14], 15, -1416354905);\r\n b = II(b, c, d, a, m[i+ 5], 21, -57434055);\r\n a = II(a, b, c, d, m[i+12], 6, 1700485571);\r\n d = II(d, a, b, c, m[i+ 3], 10, -1894986606);\r\n c = II(c, d, a, b, m[i+10], 15, -1051523);\r\n b = II(b, c, d, a, m[i+ 1], 21, -2054922799);\r\n a = II(a, b, c, d, m[i+ 8], 6, 1873313359);\r\n d = II(d, a, b, c, m[i+15], 10, -30611744);\r\n c = II(c, d, a, b, m[i+ 6], 15, -1560198380);\r\n b = II(b, c, d, a, m[i+13], 21, 1309151649);\r\n a = II(a, b, c, d, m[i+ 4], 6, -145523070);\r\n d = II(d, a, b, c, m[i+11], 10, -1120210379);\r\n c = II(c, d, a, b, m[i+ 2], 15, 718787259);\r\n b = II(b, c, d, a, m[i+ 9], 21, -343485551);\r\n\r\n a = (a + aa) >>> 0;\r\n b = (b + bb) >>> 0;\r\n c = (c + cc) >>> 0;\r\n d = (d + dd) >>> 0;\r\n }\r\n\r\n return crypt.endian([a, b, c, d]);\r\n };\r\n\r\n // Auxiliary functions\r\n md5._ff = function (a, b, c, d, x, s, t) {\r\n var n = a + (b & c | ~b & d) + (x >>> 0) + t;\r\n return ((n << s) | (n >>> (32 - s))) + b;\r\n };\r\n md5._gg = function (a, b, c, d, x, s, t) {\r\n var n = a + (b & d | c & ~d) + (x >>> 0) + t;\r\n return ((n << s) | (n >>> (32 - s))) + b;\r\n };\r\n md5._hh = function (a, b, c, d, x, s, t) {\r\n var n = a + (b ^ c ^ d) + (x >>> 0) + t;\r\n return ((n << s) | (n >>> (32 - s))) + b;\r\n };\r\n md5._ii = function (a, b, c, d, x, s, t) {\r\n var n = a + (c ^ (b | ~d)) + (x >>> 0) + t;\r\n return ((n << s) | (n >>> (32 - s))) + b;\r\n };\r\n\r\n // Package private blocksize\r\n md5._blocksize = 16;\r\n md5._digestsize = 16;\r\n\r\n module.exports = function (message, options) {\r\n if (message === undefined || message === null)\r\n throw new Error('Illegal argument ' + message);\r\n\r\n var digestbytes = crypt.wordsToBytes(md5(message, options));\r\n return options && options.asBytes ? digestbytes :\r\n options && options.asString ? bin.bytesToString(digestbytes) :\r\n crypt.bytesToHex(digestbytes);\r\n };\r\n\r\n})();\r\n","/*!\n * Based on xzwasm (c) Steve Sanderson. License: MIT - https://github.com/SteveSanderson/xzwasm\n * Contains xz-embedded by Lasse Collin and Igor Pavlov. License: Public domain - https://tukaani.org/xz/embedded.html\n * and walloc (c) 2020 Igalia, S.L. 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__webpack_require__);\n/******/ \t\n/******/ \t\t// Return the exports of the module\n/******/ \t\treturn module.exports;\n/******/ \t}\n/******/ \t\n/************************************************************************/\n/******/ \t/* webpack/runtime/define property getters */\n/******/ \t(() => {\n/******/ \t\t// define getter functions for harmony exports\n/******/ \t\t__webpack_require__.d = (exports, definition) => {\n/******/ \t\t\tfor(var key in definition) {\n/******/ \t\t\t\tif(__webpack_require__.o(definition, key) && !__webpack_require__.o(exports, key)) {\n/******/ \t\t\t\t\tObject.defineProperty(exports, key, { enumerable: true, get: definition[key] });\n/******/ \t\t\t\t}\n/******/ \t\t\t}\n/******/ \t\t};\n/******/ \t})();\n/******/ \t\n/******/ \t/* webpack/runtime/hasOwnProperty shorthand */\n/******/ \t(() => {\n/******/ \t\t__webpack_require__.o = (obj, prop) => (Object.prototype.hasOwnProperty.call(obj, prop))\n/******/ \t})();\n/******/ \t\n/******/ \t/* webpack/runtime/make namespace object */\n/******/ \t(() => {\n/******/ \t\t// define __esModule on exports\n/******/ \t\t__webpack_require__.r = (exports) => {\n/******/ \t\t\tif(typeof Symbol !== 'undefined' && Symbol.toStringTag) {\n/******/ \t\t\t\tObject.defineProperty(exports, Symbol.toStringTag, { value: 'Module' });\n/******/ \t\t\t}\n/******/ \t\t\tObject.defineProperty(exports, '__esModule', { value: true });\n/******/ \t\t};\n/******/ \t})();\n/******/ \t\n/************************************************************************/\nvar __webpack_exports__ = {};\n// This entry need to be wrapped in an IIFE because it need to be isolated against other modules in the chunk.\n(() => {\n__webpack_require__.r(__webpack_exports__);\n/* harmony export */ __webpack_require__.d(__webpack_exports__, {\n/* harmony export */ XzReadableStream: () => (/* binding */ XzReadableStream)\n/* harmony export */ });\n/* harmony import */ var _dist_native_xz_decompress_wasm__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(1);\n\n\nconst ReadableStream = globalThis.ReadableStream\n // Node < 18 support web streams, but it's not available as a global, so we need to require it.\n // This won't be reached in modern browsers, and bundlers will ignore due to 'browser' field in package.json:\n || (__webpack_require__(2).ReadableStream);\n\nconst XZ_OK = 0;\nconst XZ_STREAM_END = 1;\n\nclass XzContext {\n constructor(moduleInstance) {\n this.exports = moduleInstance.exports;\n this.memory = this.exports.memory;\n this.ptr = this.exports.create_context();\n this._refresh();\n this.bufSize = this.mem32[0];\n this.inStart = this.mem32[1] - this.ptr;\n this.inEnd = this.inStart + this.bufSize;\n this.outStart = this.mem32[4] - this.ptr;\n }\n\n supplyInput(sourceDataUint8Array) {\n this._refresh();\n const inBuffer = this.mem8.subarray(this.inStart, this.inEnd);\n inBuffer.set(sourceDataUint8Array, 0);\n 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}\n }\n}\n\nclass XzReadableStream extends ReadableStream {\n static _moduleInstancePromise;\n static _moduleInstance;\n static async _getModuleInstance() {\n const base64Wasm = _dist_native_xz_decompress_wasm__WEBPACK_IMPORTED_MODULE_0__.replace('data:application/wasm;base64,', '');\n const wasmBytes = Uint8Array.from(atob(base64Wasm), c => c.charCodeAt(0)).buffer;\n const wasmOptions = {};\n const module = await WebAssembly.instantiate(wasmBytes, wasmOptions);\n XzReadableStream._moduleInstance = module.instance;\n }\n\n constructor(compressedStream) {\n let xzContext;\n let unconsumedInput = null;\n const compressedReader = compressedStream.getReader();\n\n super({\n async start(controller) {\n if (!XzReadableStream._moduleInstance) {\n await (XzReadableStream._moduleInstancePromise || (XzReadableStream._moduleInstancePromise = XzReadableStream._getModuleInstance()));\n }\n xzContext = new XzContext(XzReadableStream._moduleInstance);\n },\n\n async pull(controller) {\n if 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0x00000000, 0x77073096, 0xee0e612c, 0x990951ba, 0x076dc419, 0x706af48f, 0xe963a535, 0x9e6495a3,\n 0x0edb8832, 0x79dcb8a4, 0xe0d5e91e, 0x97d2d988, 0x09b64c2b, 0x7eb17cbd, 0xe7b82d07, 0x90bf1d91,\n 0x1db71064, 0x6ab020f2, 0xf3b97148, 0x84be41de, 0x1adad47d, 0x6ddde4eb, 0xf4d4b551, 0x83d385c7,\n 0x136c9856, 0x646ba8c0, 0xfd62f97a, 0x8a65c9ec, 0x14015c4f, 0x63066cd9, 0xfa0f3d63, 0x8d080df5,\n 0x3b6e20c8, 0x4c69105e, 0xd56041e4, 0xa2677172, 0x3c03e4d1, 0x4b04d447, 0xd20d85fd, 0xa50ab56b,\n 0x35b5a8fa, 0x42b2986c, 0xdbbbc9d6, 0xacbcf940, 0x32d86ce3, 0x45df5c75, 0xdcd60dcf, 0xabd13d59,\n 0x26d930ac, 0x51de003a, 0xc8d75180, 0xbfd06116, 0x21b4f4b5, 0x56b3c423, 0xcfba9599, 0xb8bda50f,\n 0x2802b89e, 0x5f058808, 0xc60cd9b2, 0xb10be924, 0x2f6f7c87, 0x58684c11, 0xc1611dab, 0xb6662d3d,\n 0x76dc4190, 0x01db7106, 0x98d220bc, 0xefd5102a, 0x71b18589, 0x06b6b51f, 0x9fbfe4a5, 0xe8b8d433,\n 0x7807c9a2, 0x0f00f934, 0x9609a88e, 0xe10e9818, 0x7f6a0dbb, 0x086d3d2d, 0x91646c97, 0xe6635c01,\n 0x6b6b51f4, 0x1c6c6162, 0x856530d8, 0xf262004e, 0x6c0695ed, 0x1b01a57b, 0x8208f4c1, 0xf50fc457,\n 0x65b0d9c6, 0x12b7e950, 0x8bbeb8ea, 0xfcb9887c, 0x62dd1ddf, 0x15da2d49, 0x8cd37cf3, 0xfbd44c65,\n 0x4db26158, 0x3ab551ce, 0xa3bc0074, 0xd4bb30e2, 0x4adfa541, 0x3dd895d7, 0xa4d1c46d, 0xd3d6f4fb,\n 0x4369e96a, 0x346ed9fc, 0xad678846, 0xda60b8d0, 0x44042d73, 0x33031de5, 0xaa0a4c5f, 0xdd0d7cc9,\n 0x5005713c, 0x270241aa, 0xbe0b1010, 0xc90c2086, 0x5768b525, 0x206f85b3, 0xb966d409, 0xce61e49f,\n 0x5edef90e, 0x29d9c998, 0xb0d09822, 0xc7d7a8b4, 0x59b33d17, 0x2eb40d81, 0xb7bd5c3b, 0xc0ba6cad,\n 0xedb88320, 0x9abfb3b6, 0x03b6e20c, 0x74b1d29a, 0xead54739, 0x9dd277af, 0x04db2615, 0x73dc1683,\n 0xe3630b12, 0x94643b84, 0x0d6d6a3e, 0x7a6a5aa8, 0xe40ecf0b, 0x9309ff9d, 0x0a00ae27, 0x7d079eb1,\n 0xf00f9344, 0x8708a3d2, 0x1e01f268, 0x6906c2fe, 0xf762575d, 0x806567cb, 0x196c3671, 0x6e6b06e7,\n 0xfed41b76, 0x89d32be0, 0x10da7a5a, 0x67dd4acc, 0xf9b9df6f, 0x8ebeeff9, 0x17b7be43, 0x60b08ed5,\n 0xd6d6a3e8, 0xa1d1937e, 0x38d8c2c4, 0x4fdff252, 0xd1bb67f1, 0xa6bc5767, 0x3fb506dd, 0x48b2364b,\n 0xd80d2bda, 0xaf0a1b4c, 0x36034af6, 0x41047a60, 0xdf60efc3, 0xa867df55, 0x316e8eef, 0x4669be79,\n 0xcb61b38c, 0xbc66831a, 0x256fd2a0, 0x5268e236, 0xcc0c7795, 0xbb0b4703, 0x220216b9, 0x5505262f,\n 0xc5ba3bbe, 0xb2bd0b28, 0x2bb45a92, 0x5cb36a04, 0xc2d7ffa7, 0xb5d0cf31, 0x2cd99e8b, 0x5bdeae1d,\n 0x9b64c2b0, 0xec63f226, 0x756aa39c, 0x026d930a, 0x9c0906a9, 0xeb0e363f, 0x72076785, 0x05005713,\n 0x95bf4a82, 0xe2b87a14, 0x7bb12bae, 0x0cb61b38, 0x92d28e9b, 0xe5d5be0d, 0x7cdcefb7, 0x0bdbdf21,\n 0x86d3d2d4, 0xf1d4e242, 0x68ddb3f8, 0x1fda836e, 0x81be16cd, 0xf6b9265b, 0x6fb077e1, 0x18b74777,\n 0x88085ae6, 0xff0f6a70, 0x66063bca, 0x11010b5c, 0x8f659eff, 0xf862ae69, 0x616bffd3, 0x166ccf45,\n 0xa00ae278, 0xd70dd2ee, 0x4e048354, 0x3903b3c2, 0xa7672661, 0xd06016f7, 0x4969474d, 0x3e6e77db,\n 0xaed16a4a, 0xd9d65adc, 0x40df0b66, 0x37d83bf0, 0xa9bcae53, 0xdebb9ec5, 0x47b2cf7f, 0x30b5ffe9,\n 0xbdbdf21c, 0xcabac28a, 0x53b39330, 0x24b4a3a6, 0xbad03605, 0xcdd70693, 0x54de5729, 0x23d967bf,\n 0xb3667a2e, 0xc4614ab8, 0x5d681b02, 0x2a6f2b94, 0xb40bbe37, 0xc30c8ea1, 0x5a05df1b, 0x2d02ef8d,\n];\nif (typeof Int32Array !== 'undefined') {\n TABLE = new Int32Array(TABLE);\n}\nconst crc32 = (current, previous) => {\n // eslint-disable-next-line @typescript-eslint/no-non-null-assertion\n let crc = previous === 0 ? 0 : ~~previous ^ -1;\n for (let index = 0; index < current.length; index++) {\n crc = TABLE[(crc ^ current[index]) & 0xff] ^ (crc >>> 8);\n }\n return crc ^ -1;\n};\nexport default crc32;\n","/* eslint-disable @typescript-eslint/no-explicit-any */\n/* eslint-disable no-prototype-builtins */\nimport { Buffer } from 'buffer';\nconst createBuffer = (value, encoding) => Buffer.from(value, encoding);\nexport default createBuffer;\n","import crc32 from './calculators/crc32.js';\nimport defineCrc from './define_crc.js';\nexport default defineCrc('crc-32', crc32);\n","import createBuffer from 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const tags = {\n AM: 'The smallest template-independent mapping quality in the template',\n AS: 'Alignment score generated by aligner',\n BC: 'Barcode sequence identifying the sample',\n BQ: 'Offset to base alignment quality (BAQ)',\n BZ: 'Phred quality of the unique molecular barcode bases in the {OX} tag',\n CB: 'Cell identifier',\n CC: 'Reference name of the next hit',\n CM: 'Edit distance between the color sequence and the color reference (see also {NM})',\n CO: 'Free-text comments',\n CP: 'Leftmost coordinate of the next hit',\n CQ: 'Color read base qualities',\n CR: 'Cellular barcode sequence bases (uncorrected)',\n CS: 'Color read sequence',\n CT: 'Complete read annotation tag, used for consensus annotation dummy features',\n CY: 'Phred quality of the cellular barcode sequence in the {CR} tag',\n E2: 'The 2nd most likely base calls',\n FI: 'The index of segment in the template',\n FS: 'Segment suffix',\n FZ: 'Flow signal intensities',\n GC: 'Reserved for backwards compatibility reasons',\n GQ: 'Reserved for backwards compatibility reasons',\n GS: 'Reserved for backwards compatibility reasons',\n H0: 'Number of perfect hits',\n H1: 'Number of 1-difference hits (see also {NM})',\n H2: 'Number of 2-difference hits',\n HI: 'Query hit index',\n IH: 'Query hit total count',\n LB: 'Library',\n MC: 'CIGAR string for mate/next segment',\n MD: 'String encoding mismatched and deleted reference bases',\n MF: 'Reserved for backwards compatibility reasons',\n MI: 'Molecular identifier; a string that uniquely identifies the molecule from which the record was derived',\n ML: 'Base modification probabilities',\n MM: 'Base modifications / methylation ',\n MQ: 'Mapping quality of the mate/next segment',\n NH: 'Number of reported alignments that contain the query in the current record',\n NM: 'Edit distance to the reference',\n OA: 'Original alignment',\n OC: 'Original CIGAR (deprecated; use {OA} instead)',\n OP: 'Original mapping position (deprecated; use {OA} instead)',\n OQ: 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conditional on the best being wrong',\n UQ: 'Phred likelihood of the segment, conditional on the mapping being correct',\n}\n","import React from 'react'\nimport { Checkbox, FormControlLabel, FormGroup } from '@mui/material'\nimport { makeStyles } from 'tss-react/mui'\nimport { BaseCard } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail'\nimport SimpleField from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/SimpleField'\n\nconst useStyles = makeStyles()({\n compact: {\n paddingRight: 0,\n paddingTop: 0,\n paddingBottom: 0,\n },\n})\n\nconst flagNames = [\n 'read paired',\n 'read mapped in proper pair',\n 'read unmapped',\n 'mate unmapped',\n 'read reverse strand',\n 'mate reverse strand',\n 'first in pair',\n 'second in pair',\n 'not primary alignment',\n 'read fails platform/vendor quality checks',\n 'read is PCR or optical duplicate',\n 'supplementary alignment',\n]\n\nexport default function AlignmentFlags(props: { feature: { flags: number } }) {\n const { classes } = useStyles()\n const { feature } = props\n const { flags } = feature\n\n return (\n \n \n \n \n )\n}\n","import React from 'react'\nimport { Link } from '@mui/material'\n\n// locals\nimport { AlignmentFeatureWidgetModel } from './stateModelFactory'\nimport { navToLoc } from './util'\n\nexport default function PairLink({\n locString,\n model,\n}: {\n locString: string\n model: AlignmentFeatureWidgetModel\n}) {\n return (\n {\n event.preventDefault()\n // eslint-disable-next-line @typescript-eslint/no-floating-promises\n navToLoc(locString, model)\n }}\n href=\"#\"\n >\n {locString}\n \n )\n}\n","import React, { useState } from 'react'\nimport copy from 'copy-to-clipboard'\n\n// this 'show more...' used specifically as a formatter on alignments feature\n// details because long SEQ or CRAM files, even a single div full of a ton of\n// data from a long read, can slow down the rest of the app\nexport default function Formatter({ value }: { value: unknown }) {\n const [show, setShow] = useState(false)\n const [copied, setCopied] = useState(false)\n const display = String(value)\n return display.length > 100 ? (\n <>\n {\n copy(display)\n setCopied(true)\n setTimeout(() => {\n setCopied(false)\n }, 700)\n }}\n >\n {copied ? 'Copied to clipboard' : 'Copy'}\n \n

It worked!

JBrowse Error