changeset 111:0a532764dcfa draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 9de1453a009c254ab11b16ae8a56cb5c22b131bf-dirty

--- a/configbedscore.sample	Sat Jun 29 09:10:04 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,183 +0,0 @@
-{
-  "configuration": {
-    "rpc": {
-      "defaultDriver": "WebWorkerRpcDriver",
-      "drivers": {
-        "MainThreadRpcDriver": {},
-        "WebWorkerRpcDriver": {}
-      }
-    },
-    "logoPath": {
-      "locationType": "UriLocation",
-      "uri": ""
-    }
-  },
-  "plugins": [ {"name": "BedScorePlugin", "umdLoc": { "uri": "bedscoreplugin.js" } } ],
-  "assemblies": [
-    {
-      "name": "Merlin",
-      "sequence": {
-        "type": "ReferenceSequenceTrack",
-        "trackId": "Merlin-ReferenceSequenceTrack",
-        "adapter": {
-          "type": "BgzipFastaAdapter",
-          "fastaLocation": {
-            "locationType": "UriLocation",
-            "uri": "Merlin.fa.gz"
-          },
-          "faiLocation": {
-            "locationType": "UriLocation",
-            "uri": "Merlin.fa.gz.fai"
-          },
-          "metadataLocation": {
-            "locationType": "UriLocation",
-            "uri": "/path/to/fa.metadata.yaml"
-          },
-          "gziLocation": {
-            "locationType": "UriLocation",
-            "uri": "Merlin.fa.gz.gzi"
-          }
-        },
-        "displays": [
-          {
-            "type": "LinearReferenceSequenceDisplay",
-            "displayId": "Merlin-ReferenceSequenceTrack-LinearReferenceSequenceDisplay"
-          },
-          {
-            "type": "LinearGCContentDisplay",
-            "displayId": "Merlin-ReferenceSequenceTrack-LinearGCContentDisplay"
-          }
-        ]
-      }
-    }
-  ],
-  "tracks": [
-    {
-      "type": "FeatureTrack",
-      "trackId": "test-6.bed_2.bed",
-      "name": "test-6.bed_2.bed",
-      "assemblyNames": [
-        "Merlin"
-      ],
-      "adapter": {
-        "type": "BedTabixAdapter",
-        "bedGzLocation": {
-          "locationType": "UriLocation",
-          "uri": "test-6.bed_2.bed.gz"
-        },
-        "index": {
-          "location": {
-            "locationType": "UriLocation",
-            "uri": "test-6.bed_2.bed.gz.tbi"
-          }
-        },
-        "columnNames": [
-          "chr",
-          "start",
-          "end",
-          "name",
-          "score"
-        ],
-        "scoreColumn": "score"
-      },
-      "displays": [
-        {
-          "type": "LinearBasicDisplay",
-          "displayId": "test-6.bed_2.bed-LinearBasicDisplay",
-                    "renderer": {
-                        "type": "SvgFeatureRenderer",
-                        "color1": "jexl:customColor(feature)"
-                        }
-        },
-        {
-          "type": "LinearArcDisplay",
-          "displayId": "test-6.bed_2.bed-LinearArcDisplay"
-        }
-      ]
-    }
-  ],
-  "internetAccounts": [],
-  "aggregateTextSearchAdapters": [],
-  "connections": [],
-  "defaultSession": {
-    "drawerPosition": "right",
-    "drawerWidth": 384,
-    "widgets": {
-      "GridBookmark": {
-        "id": "GridBookmark",
-        "type": "GridBookmarkWidget"
-      },
-      "hierarchicalTrackSelector": {
-        "id": "hierarchicalTrackSelector",
-        "type": "HierarchicalTrackSelectorWidget",
-        "initialized": true,
-        "collapsed": {},
-        "view": "hzDuu9vlddMGFqOsaKwGq",
-        "faceted": {
-          "filterText": "",
-          "showSparse": false,
-          "showFilters": true,
-          "showOptions": false,
-          "panelWidth": 400
-        }
-      }
-    },
-    "activeWidgets": {
-      "hierarchicalTrackSelector": "hierarchicalTrackSelector"
-    },
-    "minimized": false,
-    "id": "E6V-suQtYj1PSAnmq6-jz",
-    "name": "New session 6/29/2024, 2:40:30 PM",
-    "margin": 0,
-    "views": [
-      {
-        "id": "hzDuu9vlddMGFqOsaKwGq",
-        "minimized": false,
-        "type": "LinearGenomeView",
-        "offsetPx": 0,
-        "bpPerPx": 88.97425334706489,
-        "displayedRegions": [
-          {
-            "refName": "Merlin",
-            "start": 0,
-            "end": 172788,
-            "reversed": false,
-            "assemblyName": "Merlin"
-          }
-        ],
-        "tracks": [
-          {
-            "id": "sZaD_oFrn0S3MqLdbNEZI",
-            "type": "FeatureTrack",
-            "configuration": "test-6.bed_2.bed",
-            "minimized": false,
-            "displays": [
-              {
-                "id": "JmJklY1ylJY0_SB-IDkNm",
-                "type": "LinearBasicDisplay",
-                "configuration": "test-6.bed_2.bed-LinearBasicDisplay"
-              }
-            ]
-          }
-        ],
-        "hideHeader": false,
-        "hideHeaderOverview": false,
-        "hideNoTracksActive": false,
-        "trackSelectorType": "hierarchical",
-        "showCenterLine": false,
-        "showCytobandsSetting": true,
-        "trackLabels": "",
-        "showGridlines": true,
-        "showBookmarkHighlights": true,
-        "showBookmarkLabels": true
-      }
-    ],
-    "sessionTracks": [],
-    "sessionAssemblies": [],
-    "temporaryAssemblies": [],
-    "connectionInstances": [],
-    "sessionConnections": [],
-    "focusedViewId": "hzDuu9vlddMGFqOsaKwGq",
-    "sessionPlugins": []
-  }
-}